Query         gi|254780602|ref|YP_003065015.1| aspartate aminotransferase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 400
No_of_seqs    182 out of 14719
Neff          8.3 
Searched_HMMs 39220
Date          Sun May 29 22:29:33 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780602.hhm -d /home/congqian_1/database/cdd/Cdd.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 PRK06507 consensus             100.0       0       0  716.5  20.7  400    1-400     1-400 (400)
  2 PRK07543 consensus             100.0       0       0  718.0  19.2  400    1-400     1-400 (400)
  3 PRK06107 aspartate aminotransf 100.0       0       0  709.3  20.5  397    4-400     6-402 (402)
  4 PRK05764 aspartate aminotransf 100.0       0       0  704.1  19.9  389    1-400     1-389 (389)
  5 PRK06575 consensus             100.0       0       0  702.2  21.4  399    1-399     1-399 (399)
  6 PRK05794 consensus             100.0       0       0  690.1  19.7  396    2-399     1-396 (397)
  7 PRK06056 consensus             100.0       0       0  686.5  19.8  397    2-400     5-402 (402)
  8 PRK08069 consensus             100.0       0       0  682.8  18.8  390    2-397     1-390 (390)
  9 PRK07310 consensus             100.0       0       0  680.4  20.5  393    2-400     1-394 (395)
 10 PRK07367 consensus             100.0       0       0  680.9  18.9  385    4-399     1-385 (385)
 11 PRK08443 consensus             100.0       0       0  671.0  20.4  386    3-400     1-388 (388)
 12 PRK09148 aminotransferase; Val 100.0       0       0  669.7  18.4  388    1-399     1-392 (406)
 13 PRK05942 aspartate aminotransf 100.0       0       0  666.8  19.9  385    2-400     6-394 (394)
 14 PRK08068 transaminase; Reviewe 100.0       0       0  659.7  19.3  381    1-395     1-386 (389)
 15 PRK07212 consensus             100.0       0       0  659.1  19.7  377    1-396     1-377 (378)
 16 PRK09276 aspartate aminotransf 100.0       0       0  658.4  19.2  380    1-394     1-384 (385)
 17 PRK08960 hypothetical protein; 100.0       0       0  656.1  19.6  382    1-398     1-387 (387)
 18 PRK07366 succinyldiaminopimela 100.0       0       0  656.5  19.1  383    2-396     1-388 (388)
 19 PRK07568 aspartate aminotransf 100.0       0       0  656.2  19.0  382    2-400     1-394 (396)
 20 PRK09265 aminotransferase AlaT 100.0       0       0  652.1  18.4  385    4-400     6-403 (404)
 21 PRK07681 aspartate aminotransf 100.0       0       0  650.9  18.8  380    1-395     1-385 (399)
 22 PRK08363 alanine aminotransfer 100.0       0       0  650.6  17.4  384    1-398     1-394 (398)
 23 PRK06290 aspartate aminotransf 100.0       0       0  648.2  18.9  386    4-400     9-404 (411)
 24 PRK08175 aminotransferase; Val 100.0       0       0  647.2  19.2  383    6-399     4-390 (395)
 25 TIGR03540 DapC_direct LL-diami 100.0       0       0  644.4  21.1  378    3-394     1-382 (383)
 26 PRK07337 aminotransferase; Val 100.0       0       0  645.6  20.1  382    2-396     1-387 (388)
 27 PRK06375 consensus             100.0       0       0  645.9  19.5  379    3-399     1-381 (381)
 28 PRK08636 aspartate aminotransf 100.0       0       0  646.0  18.9  385    5-400     7-402 (403)
 29 PRK06220 consensus             100.0       0       0  641.0  20.1  376    2-398     2-380 (384)
 30 PRK08361 aspartate aminotransf 100.0       0       0  642.4  18.6  379    3-399     8-390 (390)
 31 PRK07778 consensus             100.0       0       0  641.4  18.5  379    3-398     3-386 (386)
 32 PRK07683 aminotransferase A; V 100.0       0       0  638.0  20.3  380    1-399     1-384 (387)
 33 PRK08912 hypothetical protein; 100.0       0       0  641.4  17.5  381    1-398     1-386 (387)
 34 PRK06108 aspartate aminotransf 100.0       0       0  640.5  17.6  377    5-398     2-382 (382)
 35 PRK06207 aspartate aminotransf 100.0       0       0  638.7  18.1  388    1-400     1-405 (406)
 36 PRK06836 aspartate aminotransf 100.0       0       0  638.3  18.4  375    2-400     1-394 (396)
 37 PRK06348 aspartate aminotransf 100.0       0       0  637.1  19.3  376    3-395     5-382 (383)
 38 PRK08362 consensus             100.0       0       0  634.6  19.1  382    2-400     1-387 (389)
 39 PRK05957 aspartate aminotransf 100.0       0       0  631.1  19.0  380    1-399     1-386 (389)
 40 PRK09082 putative aminotransfe 100.0       0       0  632.4  16.8  373    4-394     8-385 (386)
 41 PRK07777 aminotransferase; Val 100.0       0       0  631.2  16.6  377    8-398     3-386 (386)
 42 PRK07550 hypothetical protein; 100.0       0       0  630.8  16.4  380    4-396     2-386 (387)
 43 PRK09147 aminotransferase; Pro 100.0       0       0  627.5  18.1  378    4-398     1-397 (397)
 44 PRK07682 hypothetical protein; 100.0       0       0  625.9  17.6  374    9-400     2-378 (378)
 45 TIGR03538 DapC_gpp succinyldia 100.0       0       0  620.0  17.5  375    4-396     1-394 (394)
 46 COG0436 Aspartate/tyrosine/aro 100.0       0       0  617.3  19.2  380    8-400     3-393 (393)
 47 PRK12414 putative aminotransfe 100.0       0       0  619.8  16.7  372    4-394     7-383 (384)
 48 PRK07309 aromatic amino acid a 100.0       0       0  617.5  18.2  378    3-399     6-389 (390)
 49 PRK07590 L,L-diaminopimelate a 100.0       0       0  616.6  16.8  375    1-396     1-409 (409)
 50 PRK06855 aminotransferase; Val 100.0       0       0  612.2  17.6  388    7-399     9-430 (433)
 51 PRK13355 bifunctional HTH-doma 100.0       0       0  602.0  18.0  370   18-400   133-516 (518)
 52 TIGR03542 DAPAT_plant LL-diami 100.0       0       0  582.6  15.9  372    2-396     1-402 (402)
 53 PRK05839 hypothetical protein; 100.0       0       0  580.6  17.1  363   10-399     2-375 (376)
 54 TIGR01265 tyr_nico_aTase tyros 100.0       0       0  575.2  13.1  374   15-398    20-422 (424)
 55 PRK07865 N-succinyldiaminopime 100.0       0       0  563.6  16.0  357    6-394     2-364 (364)
 56 TIGR03539 DapC_actino succinyl 100.0       0       0  556.9  17.2  351   11-392     1-356 (357)
 57 PRK06225 aspartate aminotransf 100.0       0       0  552.5  16.2  366    9-400     1-373 (375)
 58 TIGR03537 DapC succinyldiamino 100.0       0       0  547.1  15.5  343   32-394     1-349 (350)
 59 pfam00155 Aminotran_1_2 Aminot 100.0       0       0  536.3  13.2  345   31-392     1-351 (351)
 60 KOG0257 consensus              100.0       0       0  540.1   9.3  384    4-395     8-416 (420)
 61 PRK07324 transaminase; Validat 100.0       0       0  532.3  13.1  328   51-400    45-372 (373)
 62 TIGR01264 tyr_amTase_E tyrosin 100.0       0       0  526.3  15.2  381    8-398     9-413 (415)
 63 PRK09440 avtA valine--pyruvate 100.0       0       0  503.2  16.6  352   30-400    29-413 (416)
 64 cd00609 AAT_like Aspartate ami 100.0       0       0  495.0  13.3  346   34-394     1-350 (350)
 65 COG1168 MalY Bifunctional PLP- 100.0       0       0  489.5  12.9  381    1-400     1-388 (388)
 66 PRK00950 histidinol-phosphate  100.0       0       0  483.6  13.8  362    1-397     4-369 (369)
 67 KOG0259 consensus              100.0       0       0  474.1  16.2  359   30-398    60-433 (447)
 68 PRK03566 consensus             100.0       0       0  472.7  11.9  356    5-397     7-363 (365)
 69 PRK02731 histidinol-phosphate  100.0       0       0  465.2  12.0  357    6-398     8-366 (367)
 70 PRK03158 histidinol-phosphate  100.0       0       0  446.5  12.4  356    2-395     1-358 (359)
 71 PRK05166 histidinol-phosphate  100.0       0       0  444.6  13.0  360    3-397    11-372 (374)
 72 PRK03321 putative aminotransfe 100.0       0       0  439.1  12.6  348    4-399     5-352 (352)
 73 COG1167 ARO8 Transcriptional r 100.0       0       0  430.2  15.5  350   31-399    89-456 (459)
 74 PRK06358 threonine-phosphate d 100.0       0       0  426.4  12.4  344   19-396     7-353 (354)
 75 TIGR01141 hisC histidinol-phos 100.0       0       0  427.7  10.3  363    6-392     2-374 (377)
 76 PRK05387 histidinol-phosphate  100.0       0       0  422.6  11.0  349    3-398     4-353 (353)
 77 PRK04152 consensus             100.0       0       0  419.2  11.9  359    2-395     1-363 (364)
 78 PRK07392 threonine-phosphate d 100.0       0       0  417.4  12.1  346   19-398    10-357 (358)
 79 PRK02610 histidinol-phosphate  100.0       0       0  409.4  11.6  359    1-399     2-369 (369)
 80 PRK03317 histidinol-phosphate  100.0       0       0  404.7  11.8  335   31-397    26-364 (369)
 81 PRK01533 histidinol-phosphate  100.0       0       0  398.3  12.2  355    2-399     1-356 (366)
 82 PRK07908 hypothetical protein; 100.0       0       0  396.8  12.5  323   29-397    19-345 (346)
 83 PRK04870 histidinol-phosphate  100.0       0       0  388.2  13.2  340    4-394    10-354 (356)
 84 PRK08153 histidinol-phosphate  100.0       0       0  386.9  13.0  359    4-400     7-368 (370)
 85 PRK08056 threonine-phosphate d 100.0       0       0  388.4  11.1  345   19-398     8-355 (356)
 86 PRK08637 hypothetical protein; 100.0       0       0  385.0  11.7  349   34-400     6-386 (386)
 87 PRK09105 putative aminotransfe 100.0       0       0  384.1  11.4  326   31-397    46-372 (374)
 88 PRK03967 histidinol-phosphate  100.0       0       0  383.2  12.0  332    5-399     3-335 (337)
 89 KOG0256 consensus              100.0       0       0  374.7  10.1  328   62-398   115-461 (471)
 90 PRK03262 consensus             100.0       0       0  366.7   9.8  341    5-400    10-354 (355)
 91 PRK04781 histidinol-phosphate  100.0       0       0  366.0  10.0  344    4-394    10-360 (362)
 92 COG0079 HisC Histidinol-phosph 100.0       0       0  363.3  12.0  331   31-398    22-354 (356)
 93 PRK01688 histidinol-phosphate  100.0       0       0  362.6   9.8  331    4-384     9-343 (355)
 94 PRK04635 histidinol-phosphate  100.0       0       0  363.0   9.5  339    4-397     5-346 (346)
 95 KOG0258 consensus              100.0       0       0  336.5  11.8  389    4-398    13-469 (475)
 96 PRK08354 putative aminotransfe 100.0       0       0  336.7   9.0  304   31-397     8-311 (312)
 97 KOG0634 consensus              100.0       0       0  333.7  11.2  361   28-398    33-466 (472)
 98 PRK06425 histidinol-phosphate  100.0       0       0  332.2   9.8  314   31-396    16-331 (332)
 99 PRK05664 threonine-phosphate d 100.0       0       0  304.1  10.9  302   31-392    20-325 (330)
100 PRK06959 putative threonine-ph 100.0 4.2E-45       0  294.5  10.3  323   19-399    12-334 (339)
101 TIGR01140 CobD L-threonine-O-3 100.0   7E-45       0  293.3   7.9  332   31-390     5-347 (349)
102 COG3977 Alanine-alpha-ketoisov 100.0 5.4E-42       0  275.8  18.2  359   15-399    15-412 (417)
103 PRK09275 aspartate aminotransf 100.0 3.7E-41 1.4E-45  270.7  14.3  329   63-399   133-522 (531)
104 KOG0633 consensus              100.0 2.4E-35 6.2E-40  235.3   9.7  331   28-396    38-375 (375)
105 PRK09257 aromatic amino acid a 100.0 2.3E-34   6E-39  229.3   8.4  356    7-394     4-394 (397)
106 COG1448 TyrB Aspartate/tyrosin 100.0 5.3E-32 1.4E-36  215.0   7.2  357    6-393     3-393 (396)
107 pfam04864 Alliinase_C Allinase 100.0 1.5E-28 3.9E-33  193.9   9.8  287   70-396    45-363 (363)
108 TIGR01979 sufS cysteine desulf  99.9 1.4E-27 3.6E-32  188.0   3.8  329   29-396    15-408 (409)
109 PRK10874 cysteine sulfinate de  99.9 1.2E-25 3.1E-30  176.2  10.9  333   32-400    19-400 (401)
110 TIGR03392 FeS_syn_CsdA cystein  99.9 2.4E-25   6E-30  174.5  11.8  333   32-400    16-397 (398)
111 PRK09295 selenocysteine lyase;  99.9 4.9E-25 1.3E-29  172.5  11.7  333   29-398    20-404 (406)
112 cd06453 SufS_like Cysteine des  99.9   9E-24 2.3E-28  164.9   7.4  312   43-391     9-372 (373)
113 TIGR03403 nifS_epsilon cystein  99.9   8E-24 2.1E-28  165.2   7.0  317   43-400     9-377 (382)
114 pfam00266 Aminotran_5 Aminotra  99.9 2.9E-23 7.4E-28  161.7   9.7  310   44-386    10-369 (371)
115 TIGR03402 FeS_nifS cysteine de  99.9 4.8E-23 1.2E-27  160.4   7.8  324   44-400    10-374 (379)
116 COG0520 csdA Selenocysteine ly  99.9   3E-22 7.5E-27  155.6  11.5  329   30-396    20-403 (405)
117 PRK02948 cysteine desulfurase;  99.9 7.3E-23 1.9E-27  159.3   7.4  324   43-399    10-375 (381)
118 PRK05958 8-amino-7-oxononanoat  99.9 7.7E-22   2E-26  153.1  12.0  334   28-398    36-386 (387)
119 cd06454 KBL_like KBL_like; thi  99.9 8.9E-21 2.3E-25  146.6  13.2  326   31-394     1-347 (349)
120 TIGR01977 am_tr_V_EF2568 cyste  99.8 1.1E-20 2.8E-25  146.1   9.7  314   38-393     5-382 (384)
121 PRK07179 hypothetical protein;  99.8   2E-20 5.1E-25  144.5  10.4  330   28-399    51-400 (408)
122 PRK13392 5-aminolevulinate syn  99.8 5.3E-20 1.4E-24  141.9  12.0  330   29-399    44-398 (410)
123 PRK10534 L-threonine aldolase;  99.8 1.5E-20 3.8E-25  145.2   8.6  317   33-398     1-333 (333)
124 PRK13393 5-aminolevulinate syn  99.8 7.4E-20 1.9E-24  141.0  11.4  328   31-399    45-397 (404)
125 PRK09064 5-aminolevulinate syn  99.8 2.9E-19 7.3E-24  137.4  12.7  328   30-399    44-397 (406)
126 PRK06939 2-amino-3-ketobutyrat  99.8 2.9E-19 7.5E-24  137.4  11.4  329   29-399    40-394 (395)
127 PRK08249 cystathionine gamma-s  99.8 6.1E-19 1.5E-23  135.4  11.0  226   62-316    54-284 (398)
128 cd06502 TA_like Low-specificit  99.8 4.4E-19 1.1E-23  136.3   9.0  312   44-394     9-337 (338)
129 COG1104 NifS Cysteine sulfinat  99.8   8E-20   2E-24  140.8   5.0  322   43-400    11-379 (386)
130 PRK07503 methionine gamma-lyas  99.8 1.9E-18 4.8E-23  132.4  11.8  234   53-316    46-287 (403)
131 cd06452 SepCysS Sep-tRNA:Cys-t  99.8 8.9E-19 2.3E-23  134.4   9.7  318   45-396    13-360 (361)
132 TIGR01825 gly_Cac_T_rel pyrido  99.8   8E-18   2E-22  128.6  13.6  324   29-400    31-390 (392)
133 PRK06767 methionine gamma-lyas  99.8   5E-18 1.3E-22  129.9  12.4  230   61-320    50-287 (386)
134 TIGR03235 DNA_S_dndA cysteine   99.8 1.7E-19 4.3E-24  138.8   4.7  289   43-368     8-325 (354)
135 PRK06234 methionine gamma-lyas  99.8 5.5E-18 1.4E-22  129.6  12.1  226   62-316    54-287 (399)
136 TIGR03576 pyridox_MJ0158 pyrid  99.8 5.7E-18 1.5E-22  129.5  12.1  305   26-385    18-332 (346)
137 PRK07504 O-succinylhomoserine   99.8 3.5E-18 8.9E-23  130.8  10.8  226   61-316    54-286 (397)
138 PRK05937 8-amino-7-oxononanoat  99.8 4.6E-18 1.2E-22  130.1  11.4  322   30-400     3-352 (370)
139 TIGR00858 bioF 8-amino-7-oxono  99.8   2E-18 5.1E-23  132.3   8.9  326   25-392    15-377 (378)
140 cd06451 AGAT_like Alanine-glyo  99.8 4.3E-18 1.1E-22  130.2  10.1  323   43-397     8-356 (356)
141 PRK08133 O-succinylhomoserine   99.8 9.1E-18 2.3E-22  128.3  11.4  224   63-316    52-282 (391)
142 cd01494 AAT_I Aspartate aminot  99.8 2.5E-19 6.5E-24  137.8   3.0  166   70-253     2-169 (170)
143 cd00614 CGS_like CGS_like: Cys  99.8 9.8E-18 2.5E-22  128.1  10.7  224   62-316    32-261 (369)
144 COG0156 BioF 7-keto-8-aminopel  99.8 1.4E-17 3.5E-22  127.2  11.2  324   28-394    36-386 (388)
145 pfam01053 Cys_Met_Meta_PP Cys/  99.7 7.4E-18 1.9E-22  128.8   8.9  223   63-316    45-274 (381)
146 PRK06460 hypothetical protein;  99.7 1.4E-17 3.6E-22  127.1  10.2  223   62-315    37-264 (375)
147 PRK07810 O-succinylhomoserine   99.7 1.8E-17 4.7E-22  126.4  10.7  234   53-316    54-294 (406)
148 PRK11658 UDP-4-amino-4-deoxy-L  99.7   4E-18   1E-22  130.4   7.3  202   32-267     3-209 (379)
149 COG0399 WecE Predicted pyridox  99.7 2.7E-17   7E-22  125.4  10.8  318   46-398    14-373 (374)
150 PRK06176 cystathionine gamma-s  99.7 2.1E-17 5.3E-22  126.1  10.0  222   63-316    43-270 (379)
151 TIGR03588 PseC UDP-4-keto-6-de  99.7 9.1E-18 2.3E-22  128.3   7.3  201   39-268     4-213 (380)
152 PRK07505 hypothetical protein;  99.7 6.8E-17 1.7E-21  123.0  11.8  329   28-399    46-403 (405)
153 PRK08247 cystathionine gamma-s  99.7 3.6E-17 9.2E-22  124.6  10.3  287   63-400    45-366 (366)
154 KOG1412 consensus               99.7 2.5E-18 6.4E-23  131.7   4.3  356    9-395    10-405 (410)
155 PRK09028 cystathionine beta-ly  99.7 4.3E-17 1.1E-21  124.2  10.4  223   63-316    54-281 (394)
156 PRK07050 cystathionine beta-ly  99.7 1.8E-17 4.5E-22  126.5   8.2  223   63-316    58-286 (394)
157 PRK08064 cystathionine beta-ly  99.7 3.5E-17   9E-22  124.7   9.6  223   62-316    46-274 (390)
158 PRK07811 cystathionine gamma-s  99.7 3.2E-17 8.1E-22  125.0   9.2  223   63-316    51-279 (386)
159 PRK05967 cystathionine beta-ly  99.7 9.5E-17 2.4E-21  122.1  11.5  224   63-316    55-284 (392)
160 pfam01041 DegT_DnrJ_EryC1 DegT  99.7 9.1E-18 2.3E-22  128.3   5.9  193   47-268     5-203 (363)
161 PRK11706 TDP-4-oxo-6-deoxy-D-g  99.7 2.7E-17 6.9E-22  125.4   7.9  200   34-266     2-207 (375)
162 PRK05968 hypothetical protein;  99.7 9.1E-17 2.3E-21  122.2  10.6  233   53-316    44-283 (389)
163 PRK08045 cystathionine gamma-s  99.7   8E-17   2E-21  122.5  10.2  223   63-316    45-273 (386)
164 PRK08861 cystathionine gamma-s  99.7 9.8E-17 2.5E-21  122.0  10.5  223   63-316    46-274 (388)
165 pfam01212 Beta_elim_lyase Beta  99.7 2.6E-18 6.7E-23  131.6   2.5  261   44-328     9-285 (288)
166 KOG1549 consensus               99.7 1.6E-17   4E-22  126.9   6.4  204   28-255    39-257 (428)
167 KOG1368 consensus               99.7 8.2E-17 2.1E-21  122.5  10.0  312   46-398    35-369 (384)
168 cd00616 AHBA_syn 3-amino-5-hyd  99.7 6.4E-18 1.6E-22  129.2   4.0  190   50-268     2-196 (352)
169 PRK06084 O-acetylhomoserine am  99.7 2.6E-16 6.6E-21  119.4  11.8  163   64-253    52-219 (424)
170 PRK08776 cystathionine gamma-s  99.7 8.5E-17 2.2E-21  122.4   8.7  223   63-316    53-281 (405)
171 TIGR01976 am_tr_V_VC1184 cyste  99.7 5.9E-17 1.5E-21  123.3   7.8  330   29-388    18-406 (410)
172 KOG1411 consensus               99.7 2.9E-17 7.4E-22  125.2   5.9  340   11-379    34-405 (427)
173 PRK05939 hypothetical protein;  99.7   2E-16 5.1E-21  120.1  10.1  180   43-252    21-205 (396)
174 PRK08134 O-acetylhomoserine am  99.7   3E-16 7.6E-21  119.0  10.8  174   53-252    45-224 (433)
175 PRK08114 cystathionine beta-ly  99.7 1.9E-16 4.9E-21  120.2   9.6  223   63-316    55-284 (395)
176 COG2008 GLY1 Threonine aldolas  99.7 1.5E-16 3.7E-21  121.0   8.3  313   44-396    11-341 (342)
177 PRK05613 O-acetylhomoserine am  99.7 8.6E-16 2.2E-20  116.2  11.0  165   63-253    62-231 (437)
178 PRK08248 O-acetylhomoserine am  99.7 9.2E-16 2.3E-20  116.1  11.1  155   63-243    55-214 (431)
179 PRK08574 cystathionine gamma-s  99.7 5.1E-16 1.3E-20  117.6   9.5  223   63-316    46-273 (384)
180 PRK07582 cystathionine gamma-l  99.7 2.3E-16 5.8E-21  119.8   7.6  219   63-316    46-271 (370)
181 PRK02936 argD acetylornithine   99.7 1.6E-15 4.2E-20  114.5  11.6  330   28-396    26-377 (377)
182 PRK12381 bifunctional succinyl  99.7   4E-15   1E-19  112.2  12.9  339   28-399    36-400 (406)
183 cd00610 OAT_like Acetyl ornith  99.6 4.7E-15 1.2E-19  111.7  13.2  345   28-396    33-413 (413)
184 PRK09331 Sep-tRNA:Cys-tRNA syn  99.6 5.8E-16 1.5E-20  117.3   8.4  334   31-399    17-381 (386)
185 PRK06702 O-acetylhomoserine am  99.6 2.1E-15 5.4E-20  113.9  10.9  158   61-243    50-212 (432)
186 PRK05093 argD bifunctional N-s  99.6 4.3E-15 1.1E-19  112.0  12.4  339   28-399    37-401 (403)
187 PRK02627 acetylornithine amino  99.6 7.4E-15 1.9E-19  110.5  13.5  333   28-399    36-397 (398)
188 TIGR03246 arg_catab_astC succi  99.6 5.3E-15 1.4E-19  111.4  12.5  337   28-399    32-396 (397)
189 PRK07812 O-acetylhomoserine am  99.6 2.4E-15   6E-20  113.6  10.3  164   63-252    62-230 (436)
190 PRK07671 cystathionine beta-ly  99.6 1.7E-15 4.2E-20  114.5   9.3  222   63-316    43-270 (377)
191 PRK13479 2-aminoethylphosphona  99.6 1.9E-15 4.7E-20  114.2   9.6  325   43-399    14-364 (368)
192 PRK07049 methionine gamma-lyas  99.6 1.7E-15 4.2E-20  114.5   9.3  229   63-317    74-316 (427)
193 PRK03244 argD acetylornithine   99.6 1.1E-14 2.8E-19  109.5  13.3  336   29-399    41-395 (398)
194 PRK01278 argD bifunctional N-s  99.6 9.2E-15 2.3E-19  110.0  12.7  335   28-399    28-389 (389)
195 PRK05994 O-acetylhomoserine am  99.6 1.8E-15 4.6E-20  114.3   9.0  165   62-252    53-223 (426)
196 COG0075 Serine-pyruvate aminot  99.6 2.4E-15 6.2E-20  113.5   9.4  324   43-399    14-364 (383)
197 PRK13034 serine hydroxymethylt  99.6   3E-14 7.7E-19  106.8  14.0  360    1-399     5-396 (422)
198 TIGR03301 PhnW-AepZ 2-aminoeth  99.6 6.7E-15 1.7E-19  110.8   9.6  319   43-396     8-355 (355)
199 PRK04073 rocD ornithine--oxo-a  99.6 6.1E-14 1.5E-18  105.0  13.2  333   29-397    38-396 (396)
200 PRK00011 glyA serine hydroxyme  99.6 9.6E-14 2.5E-18  103.8  14.0  343   16-397    13-387 (415)
201 PRK07269 cystathionine gamma-s  99.6 1.2E-14   3E-19  109.3   9.3  231   63-327    47-285 (364)
202 PRK07480 putative aminotransfe  99.6 1.1E-13 2.8E-18  103.4  13.8  345   29-399    51-452 (459)
203 PRK05964 adenosylmethionine--8  99.6 1.1E-13 2.9E-18  103.3  13.7  338   29-399    40-421 (421)
204 PRK06917 hypothetical protein;  99.6 6.9E-14 1.8E-18  104.6  12.6  353   28-399    28-438 (447)
205 PRK13520 L-tyrosine decarboxyl  99.6 4.7E-14 1.2E-18  105.7  11.5  345   17-397     9-374 (375)
206 PRK12389 glutamate-1-semialdeh  99.6 1.7E-14 4.2E-19  108.4   9.1  344   29-399    51-428 (429)
207 PRK00854 rocD ornithine--oxo-a  99.6 4.4E-14 1.1E-18  105.9  11.1  333   29-397    42-403 (404)
208 PRK00062 glutamate-1-semialdeh  99.6 2.5E-14 6.4E-19  107.3   9.4  341   29-400    50-428 (429)
209 PRK04260 acetylornithine amino  99.6   4E-14   1E-18  106.1  10.3  333   28-396    26-375 (375)
210 PRK07678 aminotransferase; Val  99.5 1.2E-13 3.2E-18  103.1  12.3  352   29-400    45-451 (451)
211 PRK06434 cystathionine gamma-l  99.5 6.9E-14 1.8E-18  104.6  10.9  221   63-316    55-282 (384)
212 PRK08593 4-aminobutyrate amino  99.5 1.4E-13 3.5E-18  102.8  12.3  347   29-400    43-434 (448)
213 PTZ00125 ornithine aminotransf  99.5 1.5E-13 3.9E-18  102.5  12.2  336   29-399    47-414 (415)
214 PRK06942 glutamate-1-semialdeh  99.5 6.2E-14 1.6E-18  104.9  10.2  347   29-399    48-425 (425)
215 COG4992 ArgD Ornithine/acetylo  99.5   1E-13 2.6E-18  103.6  11.2  332   29-399    40-399 (404)
216 COG0626 MetC Cystathionine bet  99.5 4.6E-14 1.2E-18  105.7   9.2  228   62-320    55-291 (396)
217 PRK09044 consensus              99.5 1.9E-13 4.8E-18  102.0  12.2  334   29-398    40-417 (418)
218 PRK08360 4-aminobutyrate amino  99.5 2.1E-13 5.3E-18  101.7  12.4  347   28-400    38-428 (443)
219 TIGR01822 2am3keto_CoA 2-amino  99.5 8.7E-14 2.2E-18  104.0  10.3  327   28-397    35-390 (395)
220 PRK07323 consensus              99.5 1.5E-13 3.9E-18  102.5  11.1  345   29-399    56-443 (443)
221 cd00378 SHMT Serine-glycine hy  99.5 6.4E-13 1.6E-17   98.8  14.1  345   16-397     7-384 (402)
222 PRK06105 aminotransferase; Pro  99.5 4.5E-13 1.2E-17   99.7  13.3  348   29-399    46-450 (460)
223 PRK04612 argD bifunctional N-s  99.5   5E-13 1.3E-17   99.4  13.3  337   28-398    37-403 (408)
224 PRK06916 adenosylmethionine--8  99.5 3.9E-13   1E-17  100.1  12.6  346   29-399    56-458 (462)
225 PRK06777 4-aminobutyrate amino  99.5 2.4E-13 6.2E-18  101.3  11.2  344   29-398    38-421 (421)
226 PRK07036 hypothetical protein;  99.5 3.1E-13 7.8E-18  100.7  11.7  345   28-399    48-453 (466)
227 PRK13360 omega amino acid--pyr  99.5 5.5E-13 1.4E-17   99.2  12.8  341   28-399    42-440 (441)
228 PRK07483 hypothetical protein;  99.5 4.5E-13 1.1E-17   99.7  11.8  354   28-398    27-437 (443)
229 PRK07046 aminotransferase; Val  99.5 3.2E-13 8.2E-18  100.6  11.0  339   30-399    73-450 (452)
230 PRK07482 hypothetical protein;  99.5 8.3E-13 2.1E-17   98.1  12.8  349   28-399    47-455 (461)
231 PRK00451 glycine dehydrogenase  99.5 3.1E-13 7.8E-18  100.7  10.5  343   16-396    49-448 (449)
232 PRK07481 hypothetical protein;  99.5   4E-13   1E-17  100.0  11.1  349   29-400    40-446 (448)
233 PRK11522 putrescine--2-oxoglut  99.5 8.4E-13 2.1E-17   98.0  12.6  322   46-400   109-462 (468)
234 PRK05965 hypothetical protein;  99.5 5.8E-13 1.5E-17   99.0  11.7  347   29-399    44-448 (459)
235 PRK08088 4-aminobutyrate amino  99.5 7.2E-13 1.8E-17   98.4  12.1  350   28-400    39-426 (426)
236 PRK09792 PLP-dependent GABA am  99.5 9.3E-13 2.4E-17   97.8  12.5  341   29-397    38-420 (421)
237 PRK00615 glutamate-1-semialdeh  99.5 1.1E-13 2.8E-18  103.5   7.7  347   29-399    51-429 (433)
238 PRK05630 adenosylmethionine--8  99.5 8.1E-13 2.1E-17   98.1  12.1  334   29-398    40-422 (423)
239 PRK08117 4-aminobutyrate amino  99.5 1.7E-12 4.3E-17   96.2  13.6  345   28-399    38-428 (429)
240 PRK09221 beta alanine--pyruvat  99.5 1.7E-12 4.4E-17   96.1  13.3  342   29-399    47-444 (445)
241 PRK06173 adenosylmethionine--8  99.5 2.1E-12 5.4E-17   95.6  13.0  335   28-398    41-425 (429)
242 PRK06058 4-aminobutyrate amino  99.5 3.3E-12 8.4E-17   94.4  13.9  345   30-399    55-446 (446)
243 PRK06082 4-aminobutyrate amino  99.5 1.8E-12 4.5E-17   96.1  12.5  344   28-399    70-453 (460)
244 PRK07495 4-aminobutyrate amino  99.5 2.6E-12 6.6E-17   95.1  13.0  349   29-400    36-421 (422)
245 TIGR00713 hemL glutamate-1-sem  99.5 1.5E-13 3.7E-18  102.7   6.6  345   28-399    45-434 (434)
246 PRK03715 argD bifunctional N-s  99.5   1E-12 2.6E-17   97.6  10.8  335   28-399    33-394 (395)
247 PRK07986 adenosylmethionine--8  99.5 3.4E-12 8.7E-17   94.3  13.4  336   28-399    40-424 (428)
248 KOG0053 consensus               99.5 1.2E-13 3.1E-18  103.1   5.9  186   72-282    77-268 (409)
249 PRK06943 adenosylmethionine--8  99.4 2.4E-12   6E-17   95.3  12.4  342   29-398    51-445 (452)
250 PRK07030 adenosylmethionine--8  99.4 2.9E-12 7.4E-17   94.8  12.7  345   28-398    44-446 (467)
251 PTZ00094 serine hydroxymethylt  99.4 4.4E-12 1.1E-16   93.6  13.5  351    8-396    12-403 (450)
252 PRK08466 consensus              99.4 3.9E-12 9.9E-17   94.0  12.9  339   28-400    43-430 (430)
253 TIGR01325 O_suc_HS_sulf O-succ  99.4 1.2E-14 3.1E-19  109.2   0.2  202   91-317    69-276 (386)
254 PRK07894 consensus              99.4 4.4E-12 1.1E-16   93.6  12.6  338   28-399    48-429 (430)
255 cd00615 Orn_deC_like Ornithine  99.4 7.1E-15 1.8E-19  110.7  -2.1  168   70-256    61-236 (294)
256 COG0112 GlyA Glycine/serine hy  99.4 1.6E-11   4E-16   90.3  14.6  345   15-399    13-391 (413)
257 PRK06918 4-aminobutyrate amino  99.4 2.3E-12 5.9E-17   95.4  10.3  347   29-399    53-445 (454)
258 pfam00464 SHMT Serine hydroxym  99.4 2.2E-12 5.6E-17   95.5  10.1  325   16-378     8-360 (380)
259 PRK06938 diaminobutyrate--2-ox  99.4 5.7E-12 1.5E-16   93.0  12.2  352   29-398    61-460 (464)
260 pfam01276 OKR_DC_1 Orn/Lys/Arg  99.4 3.1E-14 7.9E-19  106.8   0.4  168   70-253    68-253 (417)
261 TIGR01328 met_gam_lyase methio  99.4 2.5E-13 6.5E-18  101.2   4.8  202   91-316    74-282 (392)
262 PRK04013 argD acetylornithine/  99.4 1.4E-11 3.6E-16   90.6  13.6  322   29-399    22-361 (364)
263 PRK05769 4-aminobutyrate amino  99.4 3.5E-12   9E-17   94.2  10.3  344   29-399    53-441 (442)
264 PRK06062 hypothetical protein;  99.4 8.4E-12 2.1E-16   91.9  12.1  347   29-399    34-429 (434)
265 cd06450 DOPA_deC_like DOPA dec  99.4 3.7E-13 9.3E-18  100.2   4.8  310   45-394    10-344 (345)
266 PRK06541 hypothetical protein;  99.4 9.1E-12 2.3E-16   91.7  11.6  351   29-399    50-456 (460)
267 TIGR03372 putres_am_tran putre  99.4 5.8E-12 1.5E-16   92.9  10.5  336   29-396    73-442 (442)
268 PRK08742 adenosylmethionine--8  99.4   1E-11 2.6E-16   91.5  11.7  345   29-398    62-467 (472)
269 PRK12403 putative aminotransfe  99.4 1.4E-11 3.5E-16   90.6  12.3  348   29-399    52-453 (460)
270 TIGR02379 ECA_wecE TDP-4-keto-  99.4 7.4E-13 1.9E-17   98.4   4.7  190   50-266    14-208 (376)
271 TIGR00707 argD acetylornithine  99.3 6.2E-12 1.6E-16   92.8   9.1  338   29-397    27-402 (402)
272 PRK06931 diaminobutyrate--2-ox  99.3 3.8E-11 9.8E-16   87.9  12.7  348   29-398    51-449 (454)
273 COG0001 HemL Glutamate-1-semia  99.3 5.3E-12 1.4E-16   93.2   8.3  341   30-400    52-430 (432)
274 TIGR01326 OAH_OAS_sulfhy O-ace  99.3   9E-13 2.3E-17   97.9   4.3  267   95-385    76-425 (434)
275 PRK08555 consensus              99.3 2.6E-11 6.6E-16   89.0  11.4  346   29-399    50-443 (443)
276 PRK05639 4-aminobutyrate amino  99.3   7E-11 1.8E-15   86.3  13.2  343   29-398    51-443 (457)
277 cd00613 GDC-P Glycine cleavage  99.3 3.7E-12 9.4E-17   94.1   6.2  288   19-325     4-338 (398)
278 TIGR01821 5aminolev_synth 5-am  99.3 2.7E-12 6.8E-17   95.0   4.7  347    3-392     6-418 (427)
279 COG0076 GadB Glutamate decarbo  99.3 8.7E-12 2.2E-16   91.9   6.5  271   44-327    73-377 (460)
280 PRK06209 glutamate-1-semialdeh  99.3 8.3E-12 2.1E-16   92.0   5.7  329   29-400    46-407 (431)
281 TIGR02539 SepCysS Sep-tRNA:Cys  99.3 2.9E-11 7.4E-16   88.6   8.1  295   73-400    57-381 (381)
282 COG0160 GabT 4-aminobutyrate a  99.2 5.6E-11 1.4E-15   86.9   9.3  350   29-399    54-446 (447)
283 cd00617 Tnase_like Tryptophana  99.2 7.6E-11 1.9E-15   86.1  10.0  350   22-396     2-409 (431)
284 COG2873 MET17 O-acetylhomoseri  99.2 1.1E-11 2.8E-16   91.2   5.0  141   95-256    81-225 (426)
285 KOG1358 consensus               99.2 2.5E-10 6.5E-15   82.9  11.9  340   28-399    91-466 (467)
286 PRK13237 tyrosine phenol-lyase  99.2 1.1E-10 2.8E-15   85.2   8.5  365    9-397    14-435 (459)
287 TIGR02080 O_succ_thio_ly O-suc  99.2 1.3E-11 3.4E-16   90.7   3.5  241   34-316    26-273 (383)
288 PRK13580 serine hydroxymethylt  99.2 1.7E-09 4.4E-14   77.8  13.8  330   34-398    54-447 (493)
289 PRK09264 diaminobutyrate--2-ox  99.2 9.3E-10 2.4E-14   79.5  12.3  340   28-399    36-417 (426)
290 TIGR02407 ectoine_ectB diamino  99.1 4.6E-10 1.2E-14   81.4   8.0  213  153-398   177-413 (413)
291 PRK13238 tnaA tryptophanase; P  99.1 3.2E-10 8.1E-15   82.3   7.0  361    9-395    14-434 (461)
292 PRK06149 hypothetical protein;  99.1 2.5E-09 6.5E-14   76.8  10.8  326   46-398   601-970 (972)
293 pfam06838 Alum_res Aluminium r  99.0   2E-10 5.1E-15   83.5   3.5  198   47-264    28-249 (405)
294 COG1982 LdcC Arginine/lysine/o  99.0 2.1E-10 5.4E-15   83.4   3.5  149   93-254    88-246 (557)
295 COG1103 Archaea-specific pyrid  99.0 2.3E-09 5.8E-14   77.1   8.7  335   31-400    15-382 (382)
296 PRK06148 hypothetical protein;  99.0 1.3E-08 3.4E-13   72.4  12.1  328   45-398   641-1012(1015)
297 TIGR03251 LAT_fam L-lysine 6-t  99.0 1.8E-09 4.6E-14   77.7   7.2  331   29-394    36-430 (431)
298 PRK02769 histidine decarboxyla  99.0 1.5E-09 3.8E-14   78.2   6.8  285   70-394    63-368 (380)
299 pfam00202 Aminotran_3 Aminotra  99.0 1.4E-09 3.6E-14   78.4   6.1  269   29-312    14-316 (338)
300 KOG2862 consensus               99.0 4.9E-09 1.2E-13   75.1   8.7  321   52-398    31-382 (385)
301 KOG1359 consensus               98.9 2.2E-08 5.7E-13   71.1  10.8  320   32-396    68-410 (417)
302 KOG1357 consensus               98.9 2.1E-08 5.3E-13   71.3  10.3  316   33-394   138-498 (519)
303 PRK04311 selenocysteine syntha  98.9 1.8E-08 4.5E-13   71.7   9.6  332   44-397    99-464 (465)
304 pfam03841 SelA L-seryl-tRNA se  98.8 1.4E-09 3.7E-14   78.3   2.9  263   33-312     8-296 (367)
305 PRK08297 L-lysine aminotransfe  98.8 1.9E-08 4.9E-13   71.5   8.6  275   90-399   118-448 (449)
306 COG0161 BioA Adenosylmethionin  98.8 1.5E-07 3.9E-12   66.0  11.6  328   46-399    62-444 (449)
307 PRK04366 glycine dehydrogenase  98.8   4E-08   1E-12   69.6   8.3  346   18-396    55-449 (490)
308 COG1921 SelA Selenocysteine sy  98.7 1.1E-08 2.7E-13   73.0   4.4  229   33-284    29-266 (395)
309 COG3033 TnaA Tryptophanase [Am  98.7 8.8E-08 2.2E-12   67.4   9.1  358   19-397    25-446 (471)
310 TIGR01885 Orn_aminotrans ornit  98.7 4.5E-08 1.1E-12   69.2   7.0  337   29-396    40-426 (426)
311 PRK13578 ornithine decarboxyla  98.7 3.4E-08 8.8E-13   69.9   6.3  151   94-253   193-368 (720)
312 TIGR02326 transamin_PhnW 2-ami  98.7 1.2E-07   3E-12   66.7   8.5  321   43-397    12-364 (366)
313 TIGR00700 GABAtrnsam 4-aminobu  98.7 6.2E-08 1.6E-12   68.4   6.6  346   29-397    31-426 (427)
314 TIGR01324 cysta_beta_ly_B cyst  98.7 2.1E-08 5.3E-13   71.3   3.9  179   57-262    42-228 (389)
315 TIGR01329 cysta_beta_ly_E cyst  98.6 1.4E-08 3.7E-13   72.2   2.7  198   62-284    41-256 (415)
316 COG1003 GcvP Glycine cleavage   98.5 3.4E-08 8.6E-13   70.0   1.9  194   32-244    67-272 (496)
317 KOG1401 consensus               98.5   5E-07 1.3E-11   62.9   7.3  344   28-399    53-431 (433)
318 KOG1360 consensus               98.5 3.6E-07 9.2E-12   63.7   5.9  220  152-395   287-521 (570)
319 pfam00282 Pyridoxal_deC Pyrido  98.5   9E-08 2.3E-12   67.4   2.7  233   12-258    15-280 (370)
320 COG4100 Cystathionine beta-lya  98.5 1.8E-07 4.7E-12   65.5   4.3  194   48-262    39-257 (416)
321 TIGR01788 Glu-decarb-GAD gluta  98.5 7.7E-08   2E-12   67.8   2.3  359   25-399    42-492 (493)
322 PRK12566 glycine dehydrogenase  98.4 5.8E-07 1.5E-11   62.5   6.3  208   31-257   500-726 (954)
323 KOG1404 consensus               98.4   2E-06   5E-11   59.3   8.2  339   29-392    48-432 (442)
324 PRK05367 glycine dehydrogenase  98.3   1E-06 2.6E-11   60.9   5.6  194   31-244   499-708 (955)
325 pfam02347 GDC-P Glycine cleava  98.3   1E-05 2.6E-10   54.9   9.8  274   16-319    49-371 (429)
326 KOG1383 consensus               98.2 1.2E-06 3.1E-11   60.5   3.8  240   70-326   118-388 (491)
327 KOG2467 consensus               98.2   6E-05 1.5E-09   50.2  11.8  319   16-377    28-399 (477)
328 KOG1402 consensus               98.2 2.3E-06 5.9E-11   58.8   4.2  221  153-397   195-426 (427)
329 TIGR02006 IscS cysteine desulf  98.1 5.8E-07 1.5E-11   62.4   1.0  320   43-400    13-381 (404)
330 cd00611 PSAT_like Phosphoserin  98.1 3.3E-05 8.4E-10   51.8   9.4  318   34-395     1-353 (355)
331 TIGR01437 selA_rel pyridoxal p  98.1 5.6E-06 1.4E-10   56.5   5.5  328   31-398     9-389 (391)
332 TIGR02617 tnaA_trp_ase tryptop  98.0   6E-05 1.5E-09   50.2   8.5  327   49-400    55-447 (468)
333 PRK12462 phosphoserine aminotr  98.0  0.0001 2.7E-09   48.7   9.5  324   31-398     3-362 (364)
334 TIGR00474 selA L-seryl-tRNA se  97.8 3.5E-05 8.8E-10   51.7   4.8  262   33-314    69-360 (448)
335 TIGR00709 dat 2,4-diaminobutyr  97.8  0.0011 2.9E-08   42.4  12.4  319   47-398    85-438 (445)
336 PRK05355 phosphoserine aminotr  97.8 0.00047 1.2E-08   44.7  10.3  324   32-398     3-358 (360)
337 COG0403 GcvP Glycine cleavage   97.8 8.1E-05 2.1E-09   49.4   6.2  275   18-318    61-385 (450)
338 PRK12566 glycine dehydrogenase  97.7 0.00048 1.2E-08   44.7  10.0  328   16-392    63-438 (954)
339 COG3844 Kynureninase [Amino ac  97.7  0.0014 3.5E-08   41.9  12.3  333   24-399    23-403 (407)
340 PRK03080 phosphoserine aminotr  97.5 0.00095 2.4E-08   42.9   9.2  325   35-399    15-377 (381)
341 COG1932 SerC Phosphoserine ami  97.4  0.0022 5.6E-08   40.7   9.7  326   32-399     5-364 (365)
342 PRK05367 glycine dehydrogenase  97.2  0.0018 4.5E-08   41.3   7.2  324   17-392    65-440 (955)
343 KOG0628 consensus               97.1   0.014 3.5E-07   35.8  11.0   81  128-212   195-279 (511)
344 TIGR00461 gcvP glycine dehydro  97.0 0.00048 1.2E-08   44.7   2.7  160   62-244   538-717 (965)
345 pfam05889 SLA_LP_auto_ag Solub  96.8  0.0004   1E-08   45.2   1.1  301   73-397    57-389 (389)
346 TIGR03531 selenium_SpcS O-phos  96.6 0.00027 6.9E-09   46.2  -1.1  298   74-395   107-443 (444)
347 KOG0629 consensus               95.4   0.032 8.1E-07   33.6   4.9  195  131-335   213-439 (510)
348 TIGR01364 serC_1 phosphoserine  95.1    0.18 4.6E-06   29.0   7.9  332   33-397     1-389 (391)
349 KOG3843 consensus               95.0  0.0048 1.2E-07   38.6  -0.2  348   31-398     6-402 (432)
350 KOG2790 consensus               94.7    0.35 8.9E-06   27.3  10.4  328   31-397     6-367 (370)
351 KOG2040 consensus               94.0    0.39   1E-05   26.9   7.7  163   61-244   568-748 (1001)
352 TIGR02618 tyr_phenol_ly tyrosi  93.9   0.017 4.4E-07   35.2   0.5  336   19-379    17-404 (450)
353 TIGR02104 pulA_typeI pullulana  93.5   0.029 7.3E-07   33.9   1.1  142   96-256   158-314 (655)
354 TIGR02418 acolac_catab acetola  92.0    0.71 1.8E-05   25.4   6.5  110   41-155   181-315 (553)
355 KOG1403 consensus               90.8     1.3 3.3E-05   23.8   6.8  298   45-364    62-403 (452)
356 KOG1405 consensus               86.6    0.55 1.4E-05   26.0   2.6  211  154-399   255-484 (484)
357 TIGR01393 lepA GTP-binding pro  84.6     2.4 6.1E-05   22.2   5.1   77  170-260   276-355 (598)
358 PRK13118 consensus              81.9     1.6   4E-05   23.3   3.2   83  164-267   147-229 (269)
359 pfam00290 Trp_syntA Tryptophan  81.2     1.4 3.6E-05   23.5   2.8   47   14-61     19-68  (258)
360 PRK13116 consensus              81.1     1.6   4E-05   23.3   2.9   38   23-61     37-76  (278)
361 PRK13117 consensus              80.3     1.6   4E-05   23.3   2.8   37   23-60     37-75  (268)
362 CHL00200 trpA tryptophan synth  78.3     3.3 8.4E-05   21.3   3.9   61    1-61      1-74  (263)
363 PRK13119 consensus              78.0     3.6 9.1E-05   21.1   4.0   41   20-60     32-73  (261)
364 PRK13140 consensus              77.0     4.5 0.00012   20.5   4.3   60    1-61      1-73  (257)
365 TIGR02262 benz_CoA_lig benzoat  75.1     2.7 6.8E-05   21.9   2.7   72  314-398   400-487 (520)
366 TIGR02493 PFLA pyruvate format  71.1     8.3 0.00021   18.9   5.3   48  338-400   142-194 (243)
367 PRK13121 consensus              70.8     4.9 0.00012   20.3   3.2   83  164-267   147-229 (265)
368 PRK13137 consensus              69.0     4.1 0.00011   20.7   2.5   37   17-53     10-48  (266)
369 PRK13120 consensus              66.3     6.9 0.00018   19.4   3.2   87  164-271   151-237 (285)
370 PRK13111 trpA tryptophan synth  65.9       6 0.00015   19.7   2.8   48   14-61     19-68  (256)
371 PRK13114 consensus              65.7     5.2 0.00013   20.1   2.5   46   15-61     24-72  (266)
372 PRK13131 consensus              65.6     6.7 0.00017   19.4   3.0   44   15-59     22-68  (257)
373 PRK13139 consensus              65.0     6.6 0.00017   19.5   2.9   38   23-60     36-74  (254)
374 PRK13127 consensus              64.8     6.1 0.00015   19.7   2.7   46   15-61     22-70  (262)
375 PRK13138 consensus              61.3     7.8  0.0002   19.0   2.7  197   20-270    30-230 (264)
376 TIGR01136 cysKM cysteine synth  60.7     3.6 9.2E-05   21.1   0.9  107   67-177    37-151 (315)
377 TIGR02402 trehalose_TreZ malto  59.4     2.1 5.3E-05   22.5  -0.5   44  168-215   157-200 (564)
378 PRK13112 consensus              58.9     7.9  0.0002   19.0   2.4   84  163-267   147-230 (279)
379 TIGR01132 pgm phosphoglucomuta  58.3     3.2 8.1E-05   21.4   0.3   81   15-101    60-152 (553)
380 COG2875 CobM Precorrin-4 methy  57.8      15 0.00038   17.3   6.0   58   18-78     63-120 (254)
381 TIGR01138 cysM cysteine syntha  57.7     4.9 0.00013   20.3   1.2  115   63-182    34-156 (300)
382 TIGR01428 HAD_type_II haloacid  57.6     2.5 6.5E-05   22.0  -0.3  113   45-176    83-206 (207)
383 PRK03619 phosphoribosylformylg  57.5     6.3 0.00016   19.6   1.7   58  138-201   133-191 (223)
384 pfam06406 StbA StbA protein. T  57.5     3.7 9.4E-05   21.0   0.5   27  235-263   186-212 (318)
385 COG0329 DapA Dihydrodipicolina  55.5      16 0.00042   17.1   3.8  107   72-206    57-167 (299)
386 COG4050 Uncharacterized protei  55.0      17 0.00042   17.0   4.8   42  348-400   107-148 (152)
387 pfam09885 DUF2112 Uncharacteri  54.6      17 0.00043   17.0   5.0   42  347-399   102-143 (143)
388 TIGR01814 kynureninase kynuren  53.6     2.9 7.5E-05   21.6  -0.5  164   31-208    37-233 (444)
389 TIGR02311 HpaI 2,4-dihydroxyhe  53.4      11 0.00029   18.0   2.5   20  376-395   228-247 (249)
390 TIGR03271 methan_mark_5 putati  53.1      18 0.00045   16.9   5.0   42  347-399   101-142 (142)
391 TIGR00674 dapA dihydrodipicoli  51.7     2.9 7.5E-05   21.6  -0.8  115   61-204    41-160 (288)
392 cd06562 GH20_HexA_HexB-like Be  50.2     3.4 8.8E-05   21.2  -0.6   26   15-40     16-41  (348)
393 PRK13129 consensus              48.3      21 0.00054   16.4   5.7   38   22-60     38-77  (267)
394 pfam08885 GSCFA GSCFA family.   46.6      16  0.0004   17.2   2.3   82   23-106    15-117 (251)
395 PRK11057 ATP-dependent DNA hel  46.0     8.6 0.00022   18.8   0.9   11  183-193   246-256 (607)
396 TIGR01214 rmlD dTDP-4-dehydror  45.2     6.1 0.00015   19.7   0.0  130  108-265    16-185 (317)
397 cd06563 GH20_chitobiase-like T  44.5     5.4 0.00014   20.0  -0.3   25   16-40     17-41  (357)
398 KOG1256 consensus               44.2      25 0.00063   16.0   3.6   93  167-275   259-358 (691)
399 cd04913 ACT_AKii-LysC-BS-like_  44.1      25 0.00063   16.0   4.5   50  349-399    18-68  (75)
400 TIGR01591 Fdh-alpha formate de  43.9      12  0.0003   18.0   1.3   56  143-204   378-433 (694)
401 TIGR02397 dnaX_nterm DNA polym  42.6     9.9 0.00025   18.4   0.8   39   47-87     20-62  (363)
402 TIGR01991 HscA Fe-S protein as  40.9      28 0.00071   15.7   3.0   26   70-95    352-377 (628)
403 PRK09375 quinolinate synthetas  40.7      28 0.00071   15.7   3.7   50   71-124    46-100 (323)
404 cd06570 GH20_chitobiase-like_1  40.2     6.2 0.00016   19.6  -0.6   26   15-40     16-41  (311)
405 cd02742 GH20_hexosaminidase Be  39.1     6.6 0.00017   19.5  -0.6   26   14-39     13-38  (303)
406 TIGR02727 MTHFS_bact 5,10-meth  39.0      21 0.00054   16.4   2.0   10  244-253   129-138 (183)
407 PRK04210 phosphoenolpyruvate c  38.8      26 0.00066   15.9   2.4   22  378-399   568-589 (610)
408 PRK08265 short chain dehydroge  37.9    0.72 1.8E-05   25.3  -5.6  143   92-257     6-157 (261)
409 cd06564 GH20_DspB_LnbB-like Gl  37.8     8.6 0.00022   18.8  -0.1   26   15-40     15-40  (326)
410 smart00732 YqgFc Likely ribonu  37.3      11 0.00029   18.1   0.4   57  150-207    36-94  (99)
411 PRK05340 UDP-2,3-diacylglucosa  37.2      27  0.0007   15.7   2.4   91   31-132    40-132 (240)
412 PRK13113 consensus              36.8      32 0.00082   15.3   5.7   82  164-266   147-228 (263)
413 PRK11761 cysM cysteine synthas  36.6      24  0.0006   16.1   1.9  111   63-178    34-151 (296)
414 TIGR02102 pullulan_Gpos pullul  36.4      17 0.00044   17.0   1.2   36  168-207   561-596 (1164)
415 COG0031 CysK Cysteine synthase  35.8      18 0.00047   16.8   1.3  112   66-180    36-155 (300)
416 PRK05872 short chain dehydroge  34.4     1.1 2.7E-05   24.3  -5.3  140   92-253     9-157 (296)
417 TIGR00289 TIGR00289 conserved   34.0      17 0.00044   17.0   0.9   97  153-270    74-177 (227)
418 PRK10481 hypothetical protein;  32.3      38 0.00097   14.9   5.5   28  233-261   117-144 (224)
419 cd06569 GH20_Sm-chitobiase-lik  32.2      10 0.00027   18.3  -0.5   27   14-40     19-45  (445)
420 cd02071 MM_CoA_mut_B12_BD meth  31.5      39   0.001   14.8   4.8   70   21-100    18-88  (122)
421 cd06409 PB1_MUG70 The MUG70 pr  31.4      39   0.001   14.8   2.4   43   65-122    18-60  (86)
422 KOG0604 consensus               30.4      29 0.00073   15.6   1.5   17  118-134   218-234 (400)
423 cd01563 Thr-synth_1 Threonine   29.9      29 0.00075   15.5   1.5  135   29-177    11-151 (324)
424 COG5016 Pyruvate/oxaloacetate   29.6      42  0.0011   14.6   4.3   21   19-39     30-50  (472)
425 COG1875 NYN ribonuclease and A  29.4      17 0.00043   17.0   0.2   11  245-255   289-299 (436)
426 KOG0736 consensus               29.3      43  0.0011   14.5   2.8   20  189-208   447-466 (953)
427 PRK10333 putative ligase; Prov  29.2      32 0.00081   15.3   1.6   13  241-253   136-148 (198)
428 cd01561 CBS_like CBS_like: Thi  29.1      30 0.00076   15.5   1.4   80   67-148    28-111 (291)
429 cd06306 PBP1_TorT-like TorT-li  28.9      11 0.00029   18.0  -0.7   73  121-203    10-86  (268)
430 cd06568 GH20_SpHex_like A subg  28.8      13 0.00034   17.6  -0.4   25   16-40     17-41  (329)
431 pfam04704 Zfx_Zfy_act Zfx / Zf  28.7      27  0.0007   15.7   1.2   54  198-262   239-292 (330)
432 cd01539 PBP1_GGBP Periplasmic   28.7     9.5 0.00024   18.5  -1.2   40  154-202    47-86  (303)
433 PRK05717 oxidoreductase; Valid  28.5     5.1 0.00013   20.2  -2.6  141   93-256    11-163 (255)
434 cd01740 GATase1_FGAR_AT Type 1  28.4      37 0.00095   14.9   1.8   60  137-202   140-208 (238)
435 TIGR01368 CPSaseIIsmall carbam  28.1      16 0.00041   17.2  -0.1   24  374-397   241-266 (383)
436 cd00640 Trp-synth-beta_II Tryp  27.9      39 0.00098   14.8   1.8   77   67-145    26-105 (244)
437 PRK09701 D-allose transporter   27.6      12  0.0003   17.9  -0.8   24  154-178    72-95  (311)
438 KOG2192 consensus               27.4      42  0.0011   14.6   2.0   23  154-176   145-167 (390)
439 cd04751 Commd3 COMM_Domain con  27.4      46  0.0012   14.3   3.1   26  375-400    66-91  (95)
440 TIGR02176 pyruv_ox_red pyruvat  27.1      47  0.0012   14.3   3.3  116   31-164   208-347 (1194)
441 cd07564 nitrilases_CHs Nitrila  26.5      29 0.00074   15.6   1.0   19   18-36     21-39  (297)
442 COG2057 AtoA Acyl CoA:acetate/  26.5      48  0.0012   14.2   2.7   13   30-42     21-33  (225)
443 cd04909 ACT_PDH-BS C-terminal   26.3      48  0.0012   14.2   6.4   57  326-394     4-64  (69)
444 COG1453 Predicted oxidoreducta  26.2      49  0.0012   14.2   3.7   60   25-84      5-77  (391)
445 pfam04002 DUF2466 Protein of u  25.8      18 0.00045   16.9  -0.2   58  156-220    56-117 (123)
446 COG0061 nadF NAD kinase [Coenz  25.7      17 0.00044   16.9  -0.3   26   90-115    54-79  (281)
447 PRK09525 lacZ beta-D-galactosi  25.6      44  0.0011   14.5   1.8   25   16-40    434-461 (1027)
448 TIGR02440 FadJ fatty oxidation  25.3      50  0.0013   14.1   2.3   29   93-122   273-305 (732)
449 TIGR01873 cas_CT1978 CRISPR-as  24.0      53  0.0014   14.0   4.5   69   45-114     9-79  (91)
450 KOG1252 consensus               23.9      11 0.00029   18.0  -1.5   99   97-201   111-217 (362)
451 pfam07302 AroM AroM protein. T  23.8      54  0.0014   13.9   5.7   28  233-261   114-141 (221)
452 TIGR02204 MsbA_rel ABC transpo  23.3      45  0.0011   14.4   1.5   10  152-161   407-416 (576)
453 PRK10717 cysteine synthase A;   23.2      53  0.0014   14.0   1.9   80   64-145    36-119 (334)
454 PRK12809 putative oxidoreducta  23.1      55  0.0014   13.8   4.3   49   70-120   283-338 (639)
455 TIGR02315 ABC_phnC phosphonate  23.0      25 0.00065   15.9   0.2   25   99-124    13-37  (253)
456 TIGR00715 precor6x_red precorr  22.8      28 0.00071   15.7   0.3   13  388-400   247-259 (260)
457 cd05213 NAD_bind_Glutamyl_tRNA  22.6      28 0.00071   15.7   0.3   40   72-112    62-101 (311)
458 TIGR00877 purD phosphoribosyla  22.4      57  0.0015   13.8   3.9   26  375-400   417-443 (459)
459 COG3458 Acetyl esterase (deace  22.1      35  0.0009   15.0   0.8   10  229-239   176-185 (321)
460 TIGR02177 PorB_KorB 2-oxoacid:  21.7      59  0.0015   13.7   3.0   60   63-142     2-61  (302)
461 PRK12564 carbamoyl phosphate s  21.6      28 0.00071   15.7   0.1   11  167-177   215-226 (355)
462 KOG3220 consensus               21.5     6.5 0.00017   19.5  -3.1   79  120-214    38-120 (225)
463 TIGR01737 FGAM_synth_I phospho  21.5      60  0.0015   13.6   1.9  136  178-326    10-176 (264)
464 KOG2928 consensus               21.1      36 0.00091   15.0   0.6   53  165-219   327-381 (518)
465 COG0296 GlgB 1,4-alpha-glucan   20.9      22 0.00055   16.3  -0.5   31  182-213   212-242 (628)
466 pfam02662 FlpD Methyl-viologen  20.8      19 0.00048   16.7  -0.9   40  152-191    40-84  (124)
467 PRK10748 flavin mononucleotide  20.5      39   0.001   14.8   0.7   12  161-172   125-136 (238)
468 COG0159 TrpA Tryptophan syntha  20.4      63  0.0016   13.5   5.7   83  163-266   146-228 (265)
469 pfam00728 Glyco_hydro_20 Glyco  20.3      23 0.00058   16.2  -0.5   25   15-39     16-40  (335)
470 TIGR00699 GABAtrns_euk 4-amino  20.1      20  0.0005   16.6  -0.9  176  140-332   221-419 (469)

No 1  
>PRK06507 consensus
Probab=100.00  E-value=0  Score=716.50  Aligned_cols=400  Identities=49%  Similarity=0.853  Sum_probs=384.9

Q ss_pred             CHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             93678898738975899999999999986997266565897498899999999999838875699877898999999998
Q gi|254780602|r    1 MVFISNILRRVQPSATLVAAQRVRDLRSKGIDVLCLTAGEPDFDMPENVKYAVVRAMERGETKYTAVAGISPLREAIVEK   80 (400)
Q Consensus         1 m~~~s~~~~~l~~s~~~~~~~~~~~~~~~g~~ii~l~~G~p~~~~p~~i~~a~~~al~~~~~~Y~~~~G~~~lR~aia~~   80 (400)
                      |+.+|+|++.+++|+++.+.+++++++++|+|||+|++|+||||+|+.+++++.+++.++.++|+++.|.|+||++||+|
T Consensus         1 m~~~~~r~~~~~~s~~~~i~~~a~~l~~~G~~vi~L~iG~pd~~~p~~i~~a~~~~~~~~~~~Y~~~~G~~~LReaia~~   80 (400)
T PRK06507          1 MPSIADRLKNVDISASAAMTQRARELRAEGIKVVSLSSGEPDFPTPAHAIEAAHAAALAGDTKYPPMDGTPALKAAIQRK   80 (400)
T ss_pred             CHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH
T ss_conf             91688998618968899999999999977997377789388998889999999999745899879987849999999999


Q ss_pred             HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCC
Q ss_conf             64210133332233233454333322222223322322223333232222222222222222222223222103331000
Q gi|254780602|r   81 FRRDNDLHYTSDQIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQA  160 (400)
Q Consensus        81 ~~~~~g~~~~~e~I~it~G~~~~l~~~~~~~~~~Gd~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~  160 (400)
                      |++++|++++||+|++|+|++++|+++++++++|||+|++++|+|+.|...++.+|++++++++.++++|.+|+++|+++
T Consensus        81 ~~~~~g~~~~p~~I~vt~G~~~al~~~~~~l~~pGD~Vli~~P~y~~y~~~~~~~g~~~v~v~l~~~~g~~~d~~~le~~  160 (400)
T PRK06507         81 FKRENNLDYDPSEIVVSNGGKQVIFNAMMATCNPGDEVVIPAPSWVSYADIVKLAGGVPVAVPCREETGFKLRPEDLEAA  160 (400)
T ss_pred             HHHHHCCCCCCCEEEECCCHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHH
T ss_conf             99984899982438981782999999999966999989990587740579999819915997567011764169999974


Q ss_pred             CCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCC
Q ss_conf             12212201211354210000123333211122333332011101221100000122332221112333225741465443
Q gi|254780602|r  161 ITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKA  240 (400)
Q Consensus       161 i~~~~k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~  240 (400)
                      +++++|+|++||||||||.+|+++++++|+++|.++.+++||+||+|++++|++.++.|+.++.+++.+++|+++||||+
T Consensus       161 ~~~~tk~iil~~P~NPTG~v~s~~~l~~i~~~a~~~~~v~visDEiY~~l~~~~~~~~s~~~~~p~~~~~~i~~~S~SK~  240 (400)
T PRK06507        161 ITPRTKWLFLNFPNNPTGAACTRAEMAAIAEVMLRHPHVWIMTDDIYEHLVYDGFEFCTIAEVEPRLYDRVLTMNGVSKA  240 (400)
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCHHHHEECCCCCCCHHHHCCCCCCCEEEEECCCCC
T ss_conf             67566499974992931288647799999986653168214056642441208977887888585645535898335444


Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEC
Q ss_conf             22344544422110122687531001222332222222222223467643222222110000000245530477603302
Q gi|254780602|r  241 YAMTGLRIGYAAGALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQGVPGIRYMIP  320 (400)
Q Consensus       241 ~~~~G~RiG~~v~~~~li~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~~~~~L~~~~g~~~~~p  320 (400)
                      |++||||+||+++|+++++.+.+++++..++++++.|.+++.+|+.+++|++++++.|++||+++.+.|++++|+++..|
T Consensus       241 ~~~~G~RiG~~~~~~~~i~~~~~~~~~~~~~~~~~~Q~aa~~al~~~~~~~~~~~~~~~~rrd~l~~~L~~~~g~~~~~P  320 (400)
T PRK06507        241 YAMTGWRLGFCGGPKELIKAMSNVNGQATGGIATLAQAAAAAALDGPQDLLKERAAIYRERRDFVVEKLAEIPGLTCHKP  320 (400)
T ss_pred             CCCCCCCEEEEECCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf             46765104877487999999999986524765439999999998497777789999999999999999984789956789


Q ss_pred             CCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHCC
Q ss_conf             74089986264102332113322489899999999873979983502289972899962999999999999999998609
Q gi|254780602|r  321 DGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGHGPSIRISYAVSDAILEEACVRIKRFCHSLQ  400 (400)
Q Consensus       321 ~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~iRis~~~~~e~l~~al~rl~~~l~~l~  400 (400)
                      +||||+|+++++.............+|++|+.+|++++||+++||+.||.++||||+|+.++++|++|++||++|+++||
T Consensus       321 ~G~fy~~~~~~~~~~~~~~~~~~~~~d~~f~~~Ll~e~gV~v~PG~~FG~~~~vRis~a~~~~~l~eal~Rl~~f~~~lR  400 (400)
T PRK06507        321 EGAFYIYPNIAGLIGKTSKGGRRLETDEDFVMALLEEQHVATVQGAAYGMSPYFRLSYATDMESLGEGCARIAQFCEDLR  400 (400)
T ss_pred             CEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCC
T ss_conf             81479977540102334534566788899999999858999977874489983999964999999999999999999649


No 2  
>PRK07543 consensus
Probab=100.00  E-value=0  Score=717.99  Aligned_cols=400  Identities=61%  Similarity=1.044  Sum_probs=386.4

Q ss_pred             CHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             93678898738975899999999999986997266565897498899999999999838875699877898999999998
Q gi|254780602|r    1 MVFISNILRRVQPSATLVAAQRVRDLRSKGIDVLCLTAGEPDFDMPENVKYAVVRAMERGETKYTAVAGISPLREAIVEK   80 (400)
Q Consensus         1 m~~~s~~~~~l~~s~~~~~~~~~~~~~~~g~~ii~l~~G~p~~~~p~~i~~a~~~al~~~~~~Y~~~~G~~~lR~aia~~   80 (400)
                      |+++|+|+.+++||.+++|.+++++++++|+|||+||+|+||||+|+.|++|+.++++++.++|+++.|.++||++||+|
T Consensus         1 m~~~~~r~~~~~~~~~~~i~~~~~~~~~~G~dii~l~~G~pdf~~p~~i~~a~~~al~~~~~~Y~~~~G~~eLR~aia~~   80 (400)
T PRK07543          1 MAFLADALSRVKPSATIAVTQKARELKAAGRDVIGLGAGEPDFDTPDNIKQAAIAAINAGKTKYTAVDGIPELKQAICAK   80 (400)
T ss_pred             CCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH
T ss_conf             94688998748945999999999999977998078999799999799999999999845999898998809999999999


Q ss_pred             HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCC
Q ss_conf             64210133332233233454333322222223322322223333232222222222222222222223222103331000
Q gi|254780602|r   81 FRRDNDLHYTSDQIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQA  160 (400)
Q Consensus        81 ~~~~~g~~~~~e~I~it~G~~~~l~~~~~~~~~~Gd~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~  160 (400)
                      |++++|++++||+|++|+|++++|++++.++++|||+|++++|+|+.|...+.+.|+++++++++.+++|.+|+|+|+++
T Consensus        81 ~~~~~g~~~~pd~V~vt~G~~~al~~~~~al~~pGD~Vlv~~P~Y~~y~~~~~~~g~~~v~v~~~~e~~~~~d~~~le~~  160 (400)
T PRK07543         81 FKRENGLDYKPEQVIVGTGGKQILYNALMATLNPGDEVIIPAPYWVSYPEMVALAGGTPVFVETTAEFGFKLTPEALEAA  160 (400)
T ss_pred             HHHHHCCCCCCCEEEEECCCHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHCCEEEEEECCCCCCCCCCHHHHHHH
T ss_conf             99984899880428992782699999999857999989982786655368999808835995246333754384778974


Q ss_pred             CCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCC
Q ss_conf             12212201211354210000123333211122333332011101221100000122332221112333225741465443
Q gi|254780602|r  161 ITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKA  240 (400)
Q Consensus       161 i~~~~k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~  240 (400)
                      +++++|++++||||||||.++|++++++|+++|+++.+++||+||+|++++|++.++.++.++.+++++++|+++||||+
T Consensus       161 i~~~~k~iil~~P~NPTG~v~s~~~l~~l~~~~~~~~~v~iisDEiY~~l~~~~~~~~~~~~~~p~~~~~~i~~~s~SK~  240 (400)
T PRK07543        161 ITPKTKWFIFNSPSNPTGAAYTRAELKALTDVLVKHPHVWVLTDDMYEHLVYDDFVFTTPAQVEPSLYDRTLTMNGVSKA  240 (400)
T ss_pred             CCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCEECCHHHHHHHHCCCCCCCCHHHCCHHHHCCCCCCCCCCHH
T ss_conf             78667199987998988837641678999998887538603131245664148978899678290221034203774052


Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEC
Q ss_conf             22344544422110122687531001222332222222222223467643222222110000000245530477603302
Q gi|254780602|r  241 YAMTGLRIGYAAGALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQGVPGIRYMIP  320 (400)
Q Consensus       241 ~~~~G~RiG~~v~~~~li~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~~~~~L~~~~g~~~~~p  320 (400)
                      |++||||+||+++|+++++.+.++++...++++++.|.+++++|+++++|+++.++.|++||+.+.+.|++++|+++..|
T Consensus       241 ~~~~G~RiG~~~~p~~li~~~~~~~~~~~~~~~~~~Q~aa~~al~~~~~~~~~~~~~~~~rrd~~~~~L~~~~g~~~~~P  320 (400)
T PRK07543        241 YAMTGWRIGYAAGPAELIKAMDTIQSQSTSNPCSIAQWAAVEALNGPQDFIPANKKIFQERRDLVVSMLNQAKGIDCPTP  320 (400)
T ss_pred             CCCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf             06834304888678999999999997504676609999999998585999999999999999999999986779846799


Q ss_pred             CCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHCC
Q ss_conf             74089986264102332113322489899999999873979983502289972899962999999999999999998609
Q gi|254780602|r  321 DGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGHGPSIRISYAVSDAILEEACVRIKRFCHSLQ  400 (400)
Q Consensus       321 ~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~iRis~~~~~e~l~~al~rl~~~l~~l~  400 (400)
                      +||||+|++++++.....+.+....++++|+.+|++++||+++||+.||.++++||||+.++++|++|++||++|+++||
T Consensus       321 ~g~fy~~~~~~~~~~~~~p~~~~~~~~~~f~~~ll~~~gV~v~PG~~FG~~~~~Ri~~a~~~e~l~ea~~Rl~~f~~~lr  400 (400)
T PRK07543        321 EGAFYVYPSCAGLIGKTTPSGKVIETDEDFVTELLETEGVAVVHGSAFGLGPNFRISYATSDELLEEACKRIQRFCASLR  400 (400)
T ss_pred             CEEEEEEECCHHHHHCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCC
T ss_conf             86689821103232003755676799999999999849999984701089999899975989999999999999999658


No 3  
>PRK06107 aspartate aminotransferase; Provisional
Probab=100.00  E-value=0  Score=709.34  Aligned_cols=397  Identities=51%  Similarity=0.859  Sum_probs=382.9

Q ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             78898738975899999999999986997266565897498899999999999838875699877898999999998642
Q gi|254780602|r    4 ISNILRRVQPSATLVAAQRVRDLRSKGIDVLCLTAGEPDFDMPENVKYAVVRAMERGETKYTAVAGISPLREAIVEKFRR   83 (400)
Q Consensus         4 ~s~~~~~l~~s~~~~~~~~~~~~~~~g~~ii~l~~G~p~~~~p~~i~~a~~~al~~~~~~Y~~~~G~~~lR~aia~~~~~   83 (400)
                      .|+|+++++||++.++.+++++++++|+|||+||+|+|||++|+.|++|+.++++++.++|+++.|.++||+|||+||++
T Consensus         6 ~~~r~~~~~~~~~~~~~~~a~~l~~~G~dvi~L~iG~pdf~~p~~i~~a~~~al~~~~~~Y~~~~G~~eLReAia~~~~~   85 (402)
T PRK06107          6 PAARVSRIKPSPSTAAAARARELRAAGRSIVDLTVGEPDFDTPDHIKAAAVAAIERGETKYTLVNGTPALRKAIIAKMER   85 (402)
T ss_pred             HHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf             57898509978999999999999977997277889898999789999999999855999996998889999999999999


Q ss_pred             HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCC
Q ss_conf             10133332233233454333322222223322322223333232222222222222222222223222103331000122
Q gi|254780602|r   84 DNDLHYTSDQIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQAITP  163 (400)
Q Consensus        84 ~~g~~~~~e~I~it~G~~~~l~~~~~~~~~~Gd~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~  163 (400)
                      ++|++++||+|++|+|+++||+++++++++|||+|++++|+|+.|...+...|++++.+|++++++|.+|+|+|++++++
T Consensus        86 ~~g~~v~p~~I~vt~G~~~al~~~~~al~~pGD~Vlv~~P~Y~~y~~~~~~~g~~~~~~p~~~~~~~~~d~d~le~~~~~  165 (402)
T PRK06107         86 RNGLHYADNEICVGGGAKQAIFLALMATLEEGDEVIIPAPYWVSYPDMVLANDGTPVIVPCPEEDGFKLTAEALEAAITP  165 (402)
T ss_pred             HHCCCCCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHCCCCEEECCCCCCCCCCCCHHHHHHHCCC
T ss_conf             86899982049986888999999999957999989981686653799999839956736878234875899999974564


Q ss_pred             CCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCC
Q ss_conf             12201211354210000123333211122333332011101221100000122332221112333225741465443223
Q gi|254780602|r  164 KTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAM  243 (400)
Q Consensus       164 ~~k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~~  243 (400)
                      ++|++++||||||||.+++++++++|+++|+++.+++||+||+|++++|++.+++++.+..+++.+++|+++||||+|++
T Consensus       166 ~tk~iil~~P~NPTG~v~s~~~l~~i~~i~~~~~~i~iisDEiY~~l~~~~~~~~~~~~~~p~~~~~~i~i~s~SK~~~~  245 (402)
T PRK06107        166 RTRWLILNAPSNPTGAAYSRDELRALADVLLRHPHVLVLTDDIYDHIRFDDEPVTHLLTAAPELRDRVLLTNGVSKTYAM  245 (402)
T ss_pred             CCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEHHHHHHEECCCCCCCHHHHCHHHHCCCEEECCCCCCCCC
T ss_conf             76699988998989966534899999887752489328622202552218988886898582442254474245345677


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEECCCC
Q ss_conf             44544422110122687531001222332222222222223467643222222110000000245530477603302740
Q gi|254780602|r  244 TGLRIGYAAGALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQGVPGIRYMIPDGA  323 (400)
Q Consensus       244 ~G~RiG~~v~~~~li~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~~~~~L~~~~g~~~~~p~g~  323 (400)
                      ||||+||+++|+++++++.+++++..+|++++.|.+++.+|+.+++|+.+.++.|++||+.+.+.|++++|+++..|+||
T Consensus       246 ~G~RiG~~v~~~~li~~l~~~~~~~~~~~~~~~Q~aa~~aL~~~~~~~~~~~~~y~~rrd~~~~~l~~~~g~~~~~P~g~  325 (402)
T PRK06107        246 TGWRIGYAAGPADLIAAINKLQSQSSSCPSSISQAAAAAALNGDQSFVAESVKVYKQRRDYALERLNAIPGLSCLVPDGA  325 (402)
T ss_pred             CCCEEEEEEECHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCEE
T ss_conf             66226899858999999999962434689899999999999688478999999999999999998875799676279812


Q ss_pred             EEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHCC
Q ss_conf             89986264102332113322489899999999873979983502289972899962999999999999999998609
Q gi|254780602|r  324 FYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGHGPSIRISYAVSDAILEEACVRIKRFCHSLQ  400 (400)
Q Consensus       324 ~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~iRis~~~~~e~l~~al~rl~~~l~~l~  400 (400)
                      ||+|++++++.....+.+....++.+|+.+|++++||+++||+.||.++||||||+.++|.|++|++||+++|++||
T Consensus       326 ~y~~~d~~~~~~~~~p~~~~~~~~~~f~~~ll~~~gV~v~PG~~FG~~~~~Ri~fa~~~e~L~ea~~Rl~~al~~lr  402 (402)
T PRK06107        326 FYLYVNCAGLIGKTTPEGKVLETDTDVVLYLLDSVGVAVVQGTAYGLSPYFRMSIATSLETLEAGCDRIERAVAALR  402 (402)
T ss_pred             EEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCC
T ss_conf             79813051003445866566568899999999858999977853389982999971999999999999999999649


No 4  
>PRK05764 aspartate aminotransferase; Provisional
Probab=100.00  E-value=0  Score=704.15  Aligned_cols=389  Identities=54%  Similarity=0.867  Sum_probs=375.3

Q ss_pred             CHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             93678898738975899999999999986997266565897498899999999999838875699877898999999998
Q gi|254780602|r    1 MVFISNILRRVQPSATLVAAQRVRDLRSKGIDVLCLTAGEPDFDMPENVKYAVVRAMERGETKYTAVAGISPLREAIVEK   80 (400)
Q Consensus         1 m~~~s~~~~~l~~s~~~~~~~~~~~~~~~g~~ii~l~~G~p~~~~p~~i~~a~~~al~~~~~~Y~~~~G~~~lR~aia~~   80 (400)
                      ||.+|+|+..++||+++++.+++++++++|+|||+||+|+|||++|+.|++++.++++++.++|++++|.++||++||+|
T Consensus         1 ~~~~s~r~~~~~~s~~~~~~~~a~~~~~~G~dvi~l~~g~pd~~~p~~i~~a~~~~~~~~~~~Y~~~~G~~~LR~aia~~   80 (389)
T PRK05764          1 MMKLSKRVARVKPSATLAVTAKAKELKAAGRDVISLGAGEPDFDTPEHIKEAAIAALDEGKTKYTPAAGIPELREAIAEK   80 (389)
T ss_pred             CCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH
T ss_conf             94077898518946999999999999977998278889789999889999999999847999998998879999999999


Q ss_pred             HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCC
Q ss_conf             64210133332233233454333322222223322322223333232222222222222222222223222103331000
Q gi|254780602|r   81 FRRDNDLHYTSDQIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQA  160 (400)
Q Consensus        81 ~~~~~g~~~~~e~I~it~G~~~~l~~~~~~~~~~Gd~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~  160 (400)
                      |++++|++++||||++|+|++++|.++++++++|||+|++++|+|+.|...+..+|++++++|++++++|.+|+++|+++
T Consensus        81 ~~~~~g~~v~~d~I~it~G~~~al~~~~~~l~~pGD~Vlv~~P~Y~~y~~~~~~~g~~~v~vp~~~~~~~~~d~~~l~~~  160 (389)
T PRK05764         81 LKRDNGLDYEPDQIIVTTGAKQALYNAFMALLNPGDEVIIPAPYWVSYPEMVKLAGGKPVFVPTGEENGFKLTPEQLEAA  160 (389)
T ss_pred             HHHHHCCCCCHHHEEECCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHCCCEEEEECCCHHHCCCCCHHHHHHH
T ss_conf             99986899857978988887999999999958999989985786245899999649865550436220876899999986


Q ss_pred             CCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCC
Q ss_conf             12212201211354210000123333211122333332011101221100000122332221112333225741465443
Q gi|254780602|r  161 ITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKA  240 (400)
Q Consensus       161 i~~~~k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~  240 (400)
                      +++++|++++||||||||.++|++++++|+++|. ++|++||+||+|++++|++.++.|+.++.++..+++|+++||||+
T Consensus       161 ~~~~~k~i~l~~P~NPtG~v~s~~~l~~l~~~a~-~~~i~ii~DEiY~~l~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~  239 (389)
T PRK05764        161 ITPKTKALILNSPSNPTGAVYSKEELEAIADVAV-EHDIWVLSDEIYEKLVYDGFEFTSIASLSPELFDRTITVNGFSKA  239 (389)
T ss_pred             CCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHH-HCCCEEEEECCCCCCCCCCCCCCCHHHHCCHHHCCCEEECCCCCC
T ss_conf             3846649998899899886757799999999988-635327510134355568988888778490121143143144302


Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEC
Q ss_conf             22344544422110122687531001222332222222222223467643222222110000000245530477603302
Q gi|254780602|r  241 YAMTGLRIGYAAGALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQGVPGIRYMIP  320 (400)
Q Consensus       241 ~~~~G~RiG~~v~~~~li~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~~~~~L~~~~g~~~~~p  320 (400)
                      |++||||+||+++|+++++.+.+++++..++++++.|.+++.+|++.++|++++++.|++||+.+.+.|++++|+++..|
T Consensus       240 ~~lpGlRiG~~i~~~~li~~~~~~~~~~~~~~~~~~Q~aa~~al~~~~~~~~~~~~~~~~rr~~l~~~l~~~~g~~~~~P  319 (389)
T PRK05764        240 YAMTGWRLGYAAGPKELIKAMSKLQSQSTSNPTSIAQYAAIAALTGPQDAVEEMRKAFEERRDLMVDGLNEIPGLECPKP  319 (389)
T ss_pred             CCCCCCCEEEEEECHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCC
T ss_conf             47866036999829999999999985414789869999999998597878999999999999999999984899886478


Q ss_pred             CCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHCC
Q ss_conf             74089986264102332113322489899999999873979983502289972899962999999999999999998609
Q gi|254780602|r  321 DGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGHGPSIRISYAVSDAILEEACVRIKRFCHSLQ  400 (400)
Q Consensus       321 ~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~iRis~~~~~e~l~~al~rl~~~l~~l~  400 (400)
                      +||||+|++++..          ..++.+|+++|++++||+++||+.||.++|+||+|+.++++|++|++||++|+++||
T Consensus       320 ~G~~~~~~~~~~~----------~~~~~~~~~~ll~~~gV~~~PG~~Fg~~g~~Rl~fa~~~e~l~ea~~RL~~~l~~lk  389 (389)
T PRK05764        320 EGAFYVFPNVSKG----------ITDSEDFAEALLEEAGVAVVPGIAFGAPGYVRLSYATSLEDIEEALERIERFLKSLK  389 (389)
T ss_pred             CCCEEEEEECCCC----------CCCHHHHHHHHHHHCCEEEEECCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHCC
T ss_conf             8107995888888----------999999999999819999980732489984999983889999999999999999758


No 5  
>PRK06575 consensus
Probab=100.00  E-value=0  Score=702.20  Aligned_cols=399  Identities=51%  Similarity=0.872  Sum_probs=382.8

Q ss_pred             CHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             93678898738975899999999999986997266565897498899999999999838875699877898999999998
Q gi|254780602|r    1 MVFISNILRRVQPSATLVAAQRVRDLRSKGIDVLCLTAGEPDFDMPENVKYAVVRAMERGETKYTAVAGISPLREAIVEK   80 (400)
Q Consensus         1 m~~~s~~~~~l~~s~~~~~~~~~~~~~~~g~~ii~l~~G~p~~~~p~~i~~a~~~al~~~~~~Y~~~~G~~~lR~aia~~   80 (400)
                      |++||+|+.+++||+++++.+++++++++|+|||+||+|+|||++|++|++++.++++++.++|+++.|.++||++||+|
T Consensus         1 m~~~~~r~~~~~~s~~~~i~~~a~~l~~~G~dvi~L~iG~pdf~~p~~i~~a~~~a~~~g~~~Y~~~~G~~~Lr~aia~~   80 (399)
T PRK06575          1 MSIISTRLNSIKPSPTLAVVKKTLELKKAGVDIIALGAGEPDFDTPDNIKEAAIKAIKDGFTKYTNVEGMPLLKQAIKDK   80 (399)
T ss_pred             CHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH
T ss_conf             90789998728948999999999999977998377889589999699999999999855999889987839999999999


Q ss_pred             HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCC
Q ss_conf             64210133332233233454333322222223322322223333232222222222222222222223222103331000
Q gi|254780602|r   81 FRRDNDLHYTSDQIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQA  160 (400)
Q Consensus        81 ~~~~~g~~~~~e~I~it~G~~~~l~~~~~~~~~~Gd~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~  160 (400)
                      |++++|+++++|+|++|+|++++++.+++++++|||+|++++|+|+.|...+.+.|++++.+++..+++|.+|+|+|+++
T Consensus        81 ~~~~~~~~~~~d~i~vt~G~~~al~~~~~~l~~pGD~Vli~~P~y~~y~~~~~~~~~~~v~~~~~~e~~~~~d~e~l~~~  160 (399)
T PRK06575         81 FKRENNIDYELDEIIVSTGGKQVIYNLFMASLDKGDEVIIPAPYWVSYPDMVALSTGTPVFVNCGIENNFKLSAEALERS  160 (399)
T ss_pred             HHHHHCCCCCHHEEEEECCCCHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHCCEEEEECCCCCCCCCCCHHHHHHH
T ss_conf             99985899984319994895289999999865899989974785323589999828856994157554655589999864


Q ss_pred             CCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCC
Q ss_conf             12212201211354210000123333211122333332011101221100000122332221112333225741465443
Q gi|254780602|r  161 ITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKA  240 (400)
Q Consensus       161 i~~~~k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~  240 (400)
                      +++++|++++||||||||.+|+++++++|+++|.++.+++||+||+|++++|++.+++|+.++.+++.+++|+++|+||+
T Consensus       161 ~~~~~k~iil~nP~NPTG~v~~~eel~~i~~~~~k~~~v~iisDEiY~~~~~~~~~~~s~~~~~~~~~~~~i~~~s~SK~  240 (399)
T PRK06575        161 ITDKTKWLIINSPSNPTGASYNFEELENIAKVLRKYPHVNVMSDDIYEHITFDDFKFYTLAQIAPDLKERIFTVNGVSKA  240 (399)
T ss_pred             CCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECHHHHHHHCCCCCCCCCHHHHCCCCCCCEEEECCCCCC
T ss_conf             44476799989999998887889999999999874587378421356664168987741133076542232574142101


Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEC
Q ss_conf             22344544422110122687531001222332222222222223467643222222110000000245530477603302
Q gi|254780602|r  241 YAMTGLRIGYAAGALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQGVPGIRYMIP  320 (400)
Q Consensus       241 ~~~~G~RiG~~v~~~~li~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~~~~~L~~~~g~~~~~p  320 (400)
                      |++||||+||+++++++++.+..++++...+++.+.|.+++.+|+..++|+++.+..|++||+++.+.|++++++++..|
T Consensus       241 ~~~~G~RiG~~~~~~~~i~~~~~~~~~~~~~~~~~~q~aa~~al~~~~~~~~~~~~~~~~~r~~~~~~l~~~~~~~~~~P  320 (399)
T PRK06575        241 YSMTGWRIGYGAGSKALIKAMTIIQSQSTSNPCSISQMAAIEALNGPQDYIKPNALNFQKKRDLALSILKRVKYFECYKP  320 (399)
T ss_pred             CCCCCCCEEEEECCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECC
T ss_conf             47877233753087999999999996156786689999999998584778999999999999999999864798446179


Q ss_pred             CCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHC
Q ss_conf             7408998626410233211332248989999999987397998350228997289996299999999999999999860
Q gi|254780602|r  321 DGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGHGPSIRISYAVSDAILEEACVRIKRFCHSL  399 (400)
Q Consensus       321 ~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~iRis~~~~~e~l~~al~rl~~~l~~l  399 (400)
                      +||||+|++++.........+....++.+|+++|++++||+++||+.||.+||||++|+.+.++|+||++||+++|++|
T Consensus       321 ~G~~yl~~~~~~~~~~~~~~~~~~~~~~~f~~~Ll~e~~V~v~PG~~FG~~g~~Rl~~a~~~e~l~ea~~Rl~~a~~~L  399 (399)
T PRK06575        321 EGAFYLFVKCDKIFGHKTKSGKIIANSNDFAEYLLEEAKVAVVPGIAFGLEGYFRISYATSMEELEEACIRIERACNVL  399 (399)
T ss_pred             CCEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHC
T ss_conf             9237995777300154443467678999999999972999998485558998399997398999999999999999749


No 6  
>PRK05794 consensus
Probab=100.00  E-value=0  Score=690.11  Aligned_cols=396  Identities=45%  Similarity=0.755  Sum_probs=377.4

Q ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             36788987389758999999999999869972665658974988999999999998388756998778989999999986
Q gi|254780602|r    2 VFISNILRRVQPSATLVAAQRVRDLRSKGIDVLCLTAGEPDFDMPENVKYAVVRAMERGETKYTAVAGISPLREAIVEKF   81 (400)
Q Consensus         2 ~~~s~~~~~l~~s~~~~~~~~~~~~~~~g~~ii~l~~G~p~~~~p~~i~~a~~~al~~~~~~Y~~~~G~~~lR~aia~~~   81 (400)
                      |.+|+|+..++||.++++.+++++++++|+|||+||+|+|||++|+.|++++.++++++.++|+++.|+++||++||+||
T Consensus         1 m~~s~r~~~~~~~~~~~i~~~a~~~~~~G~dvi~l~iG~pd~~~p~~i~~a~~~~~~~~~~~Y~~~~G~~~lReaia~~~   80 (397)
T PRK05794          1 MNLSKKALQIQPSLTLEITAKAKKMKAEGIDVIGFGAGEPDFNTPENIKEAAIDAIEEGYTKYTPASGILELKQAICDKF   80 (397)
T ss_pred             CCHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf             92515856299379999999999999779982789897999997899999999998558998989977299999999999


Q ss_pred             HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCC
Q ss_conf             42101333322332334543333222222233223222233332322222222222222222222232221033310001
Q gi|254780602|r   82 RRDNDLHYTSDQIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQAI  161 (400)
Q Consensus        82 ~~~~g~~~~~e~I~it~G~~~~l~~~~~~~~~~Gd~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i  161 (400)
                      ++++|++++||+|++|+|+++||.++++++++|||+|++++|+|+.|...++..|++++++++.++++|.+|++++++++
T Consensus        81 ~~~~g~~v~~~~I~it~G~~~al~~~~~~l~~pGD~Vlv~~P~Y~~y~~~~~~~g~~~v~~~~~~~~~~~~d~~~l~~~~  160 (397)
T PRK05794         81 KKDNGLNYEPSNIIVSNGAKQSLSNAFEAILNPGDEVIIPVPYWVSYPELVKLADGVPVFVDTKEENDFKYTIEELENAI  160 (397)
T ss_pred             HHHHCCCCCHHEEEECCCHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHC
T ss_conf             99858999800189878859999999999669989899826876434999997188029965673237777999999753


Q ss_pred             CCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCC
Q ss_conf             22122012113542100001233332111223333320111012211000001223322211123332257414654432
Q gi|254780602|r  162 TPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAY  241 (400)
Q Consensus       162 ~~~~k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~  241 (400)
                      ++++|++++||||||||.+||++++++|+++|. ++|++||+||+|++++|++.+++|+.++.++..+++|+++|+||+|
T Consensus       161 ~~~~k~iil~~P~NPtG~v~s~~~l~~l~~la~-~~~i~visDEiY~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~  239 (397)
T PRK05794        161 TSKTKAIIINSPNNPTGTVYSKEELEEIAKFAK-EHDLFIISDEIYEKLIYGEEEHISIASLSEDAFKRTVVINGMSKAY  239 (397)
T ss_pred             CCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHH-HCEEEEECHHHHHHHHCCCCCCCCHHHHCHHHHCCCEECCCCCCCC
T ss_conf             335718997899898782435067999997654-1036884333457762589888788995614320332026764444


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEECC
Q ss_conf             23445444221101226875310012223322222222222234676432222221100000002455304776033027
Q gi|254780602|r  242 AMTGLRIGYAAGALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQGVPGIRYMIPD  321 (400)
Q Consensus       242 ~~~G~RiG~~v~~~~li~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~~~~~L~~~~g~~~~~p~  321 (400)
                      ++||||+||+++++++++.+..++++..++++++.|.+++.+|+.+++|+.+.+..|++||+.+.+.|++++|+++..|+
T Consensus       240 ~~~G~RvG~~~~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~al~~~~~~~~~~~~~~~~rr~~l~~~l~~~~g~~~~~P~  319 (397)
T PRK05794        240 AMTGWRIGYAASSLEIIKVMSNIQSHTTSNPNSIAQYASLEALNGDQEQIKNMVEEFKKRRDYMVERINSIKGLSCIKPK  319 (397)
T ss_pred             CCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCC
T ss_conf             77652258775589999999999986668976999999999985879999999999999999999998607996760688


Q ss_pred             CCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHC
Q ss_conf             408998626410233211332248989999999987397998350228997289996299999999999999999860
Q gi|254780602|r  322 GAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGHGPSIRISYAVSDAILEEACVRIKRFCHSL  399 (400)
Q Consensus       322 g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~iRis~~~~~e~l~~al~rl~~~l~~l  399 (400)
                      ||||+|++++...... ..+....++.+|+.+|++++||+++||+.||.++||||+|+.++++|++|++||++|+++|
T Consensus       320 g~~y~~~~~~~~~~~~-~~~~~~~~~~~f~~~ll~~~gV~v~PG~~Fg~~~~vRl~f~~~~e~l~eal~RL~~~l~~L  396 (397)
T PRK05794        320 GAFYVMVNISKVIGKE-IKGNTIKGSIDFANLLLEEENVAVVPGIAFGMDNYIRLSYATSMENIEKGLDRIENFLNKL  396 (397)
T ss_pred             EEEEEEEECHHHHCCC-CCCCCCCCHHHHHHHHHHHCCEEEEECCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHC
T ss_conf             1369958783442533-4688778999999999984999998185358998399998299999999999999999857


No 7  
>PRK06056 consensus
Probab=100.00  E-value=0  Score=686.53  Aligned_cols=397  Identities=38%  Similarity=0.652  Sum_probs=375.0

Q ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCC-CCCCCCCCCHHHHHHHHHH
Q ss_conf             367889873897589999999999998699726656589749889999999999983887-5699877898999999998
Q gi|254780602|r    2 VFISNILRRVQPSATLVAAQRVRDLRSKGIDVLCLTAGEPDFDMPENVKYAVVRAMERGE-TKYTAVAGISPLREAIVEK   80 (400)
Q Consensus         2 ~~~s~~~~~l~~s~~~~~~~~~~~~~~~g~~ii~l~~G~p~~~~p~~i~~a~~~al~~~~-~~Y~~~~G~~~lR~aia~~   80 (400)
                      +.+|+|+..+++|.+++|.+++++++++|+|||+|++|+|||++|+.+++++.+++.++. ++|+++.|+|+||++||+|
T Consensus         5 ~~~s~r~~~~~~s~~~~i~~~a~~l~~~G~~vi~l~~G~Pd~~~p~~~~~a~~~a~~~~~~~~Y~~~~G~~eLR~aia~~   84 (402)
T PRK06056          5 SRISARIGGIAESATLAVDAKAKALKAAGRPVIGFGAGEPDFPTPDHIVEAAVAACRDPKNHRYTPAAGLPELREAIAAK   84 (402)
T ss_pred             HHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf             89999986499379999999999999779982788896999998899999999997599888579986819999999999


Q ss_pred             HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCC
Q ss_conf             64210133332233233454333322222223322322223333232222222222222222222223222103331000
Q gi|254780602|r   81 FRRDNDLHYTSDQIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQA  160 (400)
Q Consensus        81 ~~~~~g~~~~~e~I~it~G~~~~l~~~~~~~~~~Gd~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~  160 (400)
                      |++++|+++++|+|++|+|+++||++++.++++|||+|++++|+|+.|...++.+|+++++++++++++|.+|+|+|+++
T Consensus        85 ~~~~~g~~~~~d~I~iT~G~~~al~~~~~~l~~pGD~Vlv~~P~y~~y~~~~~~~g~~~v~v~~~~~~~~~~d~~~le~~  164 (402)
T PRK06056         85 TLRDSGYEVSPSQVLVTNGGKQAVYEAFATLLDPGDEVILPAPYWTTYPEAIRLAGGVPVEVVAGADQGYLVTVEQLEAA  164 (402)
T ss_pred             HHHHHCCCCCHHHEEEECCCHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHH
T ss_conf             99983899880237980681499999999857999989981798756199999728970782237333778799999963


Q ss_pred             CCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCC
Q ss_conf             12212201211354210000123333211122333332011101221100000122332221112333225741465443
Q gi|254780602|r  161 ITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKA  240 (400)
Q Consensus       161 i~~~~k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~  240 (400)
                      +++++|+|++||||||||.+||.+++++|+++|. ++|++||+||+|++++|++.+++++....+++.+++|+++||||+
T Consensus       165 ~~~~tk~iil~~P~NPtG~v~s~e~l~~l~~la~-~~~i~ii~DEiY~~l~~~~~~~~s~~~~~p~~~~~~i~~~S~SK~  243 (402)
T PRK06056        165 RTERTKVLLFVSPSNPTGAVYSPEQVRAIGRWAA-EHGIWVISDEIYEHLVYDGAVFTSIPAAVPELADRCIVVNGVAKT  243 (402)
T ss_pred             CCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHH-HHCCCEECCHHHHHCCCCCCCCCCHHHHHHHHHCCCEEEECCCCC
T ss_conf             6668739998489798888742788999999999-714615510443211358988888888654541464475201133


Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEC
Q ss_conf             22344544422110122687531001222332222222222223467643222222110000000245530477603302
Q gi|254780602|r  241 YAMTGLRIGYAAGALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQGVPGIRYMIP  320 (400)
Q Consensus       241 ~~~~G~RiG~~v~~~~li~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~~~~~L~~~~g~~~~~p  320 (400)
                      |++||||+||+++++++++.+.+++++..++++.+.|.+++.+|..+++++.++++.|++||+.+.+.|++++|+++..|
T Consensus       244 ~~~~G~R~G~~v~~~~~i~~~~~~~~~~~~~~~~~~q~~a~~al~~~~~~~~~~~~~~~~rr~~~~~~L~~~~~~~~~~P  323 (402)
T PRK06056        244 YAMTGWRVGWMIGPADVIKAATNLQSHATSNVSNVSQRAALAAVSGPLDAVAEMREAFDRRRRTIVRMLNAIPGVSCPTP  323 (402)
T ss_pred             CCCCCCEEEEEEECHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCC
T ss_conf             55765307999708999999999986545774229999999998588999999987899999999999986799273588


Q ss_pred             CCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHCC
Q ss_conf             74089986264102332113322489899999999873979983502289972899962999999999999999998609
Q gi|254780602|r  321 DGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGHGPSIRISYAVSDAILEEACVRIKRFCHSLQ  400 (400)
Q Consensus       321 ~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~iRis~~~~~e~l~~al~rl~~~l~~l~  400 (400)
                      +||||+|+++++..... .......++.+|+.+|++++||+++||+.||.++|+||||+.++|+|++|++||++||+++|
T Consensus       324 ~G~~y~~~~~~~~~~~~-~~~~~~~~~~~~~~~ll~e~gV~v~PG~~Fg~~g~~Risfa~~~e~l~eal~RL~~~l~e~k  402 (402)
T PRK06056        324 DGAFYAYPDVKALLGRE-IRGRRPQTSAELAALILEEAEVAVVPGEAFGTPGYLRLSYALGDDDLVEGVRRLQELLSEAK  402 (402)
T ss_pred             CEEEEEEEECHHHCCCC-CCCCCCCCHHHHHHHHHHHCCEEEECCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHCC
T ss_conf             84469977554533632-25899899999999999709899974844489983999970899999999999999999568


No 8  
>PRK08069 consensus
Probab=100.00  E-value=0  Score=682.76  Aligned_cols=390  Identities=44%  Similarity=0.751  Sum_probs=371.5

Q ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             36788987389758999999999999869972665658974988999999999998388756998778989999999986
Q gi|254780602|r    2 VFISNILRRVQPSATLVAAQRVRDLRSKGIDVLCLTAGEPDFDMPENVKYAVVRAMERGETKYTAVAGISPLREAIVEKF   81 (400)
Q Consensus         2 ~~~s~~~~~l~~s~~~~~~~~~~~~~~~g~~ii~l~~G~p~~~~p~~i~~a~~~al~~~~~~Y~~~~G~~~lR~aia~~~   81 (400)
                      |.+|+|+.+|+||++++|.+++++++++|+|||+||+|+|||++|+.+++++.++++++.++|+++.|+++||++||+||
T Consensus         1 m~~s~r~~~~~~s~~~~i~~~a~~~~~~g~~vi~l~~G~pdf~~p~~i~~a~~~~~~~~~~~Y~~~~G~~~lreaia~~~   80 (390)
T PRK08069          1 MKLAKRVAALTPSATLAITAKAKELKAEGHDVIGLGAGEPDFNTPEHIIDAAHKAMNEGHTKYTPSGGLQALKQEIVKKF   80 (390)
T ss_pred             CCHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf             92515846499379999999999999769984789997899998899999999998548998989967299999999999


Q ss_pred             HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCC
Q ss_conf             42101333322332334543333222222233223222233332322222222222222222222232221033310001
Q gi|254780602|r   82 RRDNDLHYTSDQIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQAI  161 (400)
Q Consensus        82 ~~~~g~~~~~e~I~it~G~~~~l~~~~~~~~~~Gd~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i  161 (400)
                      ++++|++++|++|++|+|+++||+++++++++|||+|++++|+|+.|...++++|++++.+++.++++|.+|++++++++
T Consensus        81 ~~~~g~~~~p~~V~it~G~~~al~~~~~~l~~pGD~Vlv~~P~Y~~y~~~~~~~g~~~v~v~~~~~~~~~~d~~~l~~~i  160 (390)
T PRK08069         81 KRDQGLAYDPSEIIVCTGAKHALYTLFQVLLDEGDEVIIPTPYWVSYPEQVKLAGGKPVYVEGLEDNDFKITAEQLEEAI  160 (390)
T ss_pred             HHHHCCCCCHHEEEECCCHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHCCEEEEECCCCCCCCCCCHHHHHHHC
T ss_conf             99868998811189878889999999997279989899806866427999998188048714566678767999999854


Q ss_pred             CCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCC
Q ss_conf             22122012113542100001233332111223333320111012211000001223322211123332257414654432
Q gi|254780602|r  162 TPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAY  241 (400)
Q Consensus       162 ~~~~k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~  241 (400)
                      ++++|++++||||||||+++|++++++|+++|.+ ||++||+||+|++++|++.+++|++++.+++.+++|+++|+||+|
T Consensus       161 ~~~~k~iil~~P~NPTG~v~s~e~l~~i~~la~~-~~~~vi~DEiY~~l~~~~~~~~s~~~~~~~~~~~~i~~~s~SK~~  239 (390)
T PRK08069        161 TEKTKAVIINSPSNPTGMIYTKEELAALGEVCLE-HDILIVSDEIYEKLIYGGAEHVSIAQLSNELKEQTIIINGVSKSH  239 (390)
T ss_pred             CCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHH-CCEEEEEEHHHHHHCCCCCCCCCHHHHCCCCCCCCCEECCCHHHC
T ss_conf             4368589988996986816550689999999875-630598533236540699898898994954345641003530203


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEECC
Q ss_conf             23445444221101226875310012223322222222222234676432222221100000002455304776033027
Q gi|254780602|r  242 AMTGLRIGYAAGALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQGVPGIRYMIPD  321 (400)
Q Consensus       242 ~~~G~RiG~~v~~~~li~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~~~~~L~~~~g~~~~~p~  321 (400)
                      ++||||+||+++|+++++.+.+++++..++++.+.|.+++.+++..++|++++++.|++||+.+.+.|++++|+++..|+
T Consensus       240 ~~~G~RiG~~~~~~~li~~~~~~~~~~~~~~~~~~q~aa~~a~~~~~~~~~~~~~~~~~r~~~~~~~l~~~~g~~~~~P~  319 (390)
T PRK08069        240 SMTGWRIGYAAGNKQIIKAMTNLASHSTSNPTSIAQYGAIAAYAGSQEPVETMRQAFEERLNIIYDKLIQIPGFTCIKPQ  319 (390)
T ss_pred             CCCCCCEEEEECCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf             77632358876699999999999865357776399999999986886879999999999999999998506688514798


Q ss_pred             CCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHH
Q ss_conf             4089986264102332113322489899999999873979983502289972899962999999999999999998
Q gi|254780602|r  322 GAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGHGPSIRISYAVSDAILEEACVRIKRFCH  397 (400)
Q Consensus       322 g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~iRis~~~~~e~l~~al~rl~~~l~  397 (400)
                      ||||+|+++++....     ....+..+|+.+|++++||+++||+.||.++|+||||+.++++|++|++||++|++
T Consensus       320 Gg~ylw~~~~~~~~~-----~~~~~~~~~~~~ll~~~gV~v~PG~~Fg~~~~~Rl~fa~~~~~l~eal~RL~~~l~  390 (390)
T PRK08069        320 GAFYLFPNVKEAAAL-----SGFETVDEFVKALLEEEKVALVPGSGFGAPDNVRLSYATSLELLEEAIERIHRFMK  390 (390)
T ss_pred             EEEEEEEECCHHHCC-----CCCCCHHHHHHHHHHHCCEEEECCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHC
T ss_conf             038997877311122-----67888999999999859999981876799983899984999999999999999859


No 9  
>PRK07310 consensus
Probab=100.00  E-value=0  Score=680.38  Aligned_cols=393  Identities=40%  Similarity=0.691  Sum_probs=371.2

Q ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCC-CCCCCCCCHHHHHHHHHH
Q ss_conf             3678898738975899999999999986997266565897498899999999999838875-699877898999999998
Q gi|254780602|r    2 VFISNILRRVQPSATLVAAQRVRDLRSKGIDVLCLTAGEPDFDMPENVKYAVVRAMERGET-KYTAVAGISPLREAIVEK   80 (400)
Q Consensus         2 ~~~s~~~~~l~~s~~~~~~~~~~~~~~~g~~ii~l~~G~p~~~~p~~i~~a~~~al~~~~~-~Y~~~~G~~~lR~aia~~   80 (400)
                      ..||+|+.+++||.++.|.+++++++++|+|||+||+|+|||++|+.|++|++++++++.+ +|+++.|.++||++|++|
T Consensus         1 ~~~~~r~~~~~~s~~~~i~~~a~~l~~~G~dvi~L~iG~pdf~~p~~i~~a~~~a~~~~~~~~Y~~~~G~~~lR~Aia~~   80 (395)
T PRK07310          1 PKLSKRVLEMEESVTLAAGARAKALKAQGRDILSLTLGEPDFVTPKNIQDAAIESIENGRASFYTVASGLPELKAAIATY   80 (395)
T ss_pred             CCHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf             92406867099689999999999999779973776895899998999999999998289888789974739999999999


Q ss_pred             HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCC
Q ss_conf             64210133332233233454333322222223322322223333232222222222222222222223222103331000
Q gi|254780602|r   81 FRRDNDLHYTSDQIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQA  160 (400)
Q Consensus        81 ~~~~~g~~~~~e~I~it~G~~~~l~~~~~~~~~~Gd~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~  160 (400)
                      |++++|++++||+|++|+|+++||+++++++++|||+|++++|+|+.|...++++|++++.+++.++++|.+|+|+|+++
T Consensus        81 ~~~~~g~~v~pd~I~vt~G~~~al~~~~~~l~~pGD~Vlv~~P~Y~~y~~~~~~~g~~~v~~~~~~~~~~~~d~~~l~~~  160 (395)
T PRK07310         81 FENFYGYHLSPNQIVVGTGAKFILYAFFMAVLNPGDEVIIPTPYWVSYSDQVKMAEGVPVFVQAKEENHFKVTVEQLEAA  160 (395)
T ss_pred             HHHHHCCCCCHHHEEECCCHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHH
T ss_conf             89987899883209987788999999999974999989983787754699999759989997567445745049999974


Q ss_pred             CCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCC
Q ss_conf             12212201211354210000123333211122333332011101221100000122332221112333225741465443
Q gi|254780602|r  161 ITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKA  240 (400)
Q Consensus       161 i~~~~k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~  240 (400)
                      +++++|++++||||||||.+|+++++++|+++|. +||++||+||+|++++|++.+++|+.++.+...+++|+++|+||+
T Consensus       161 ~~~~~k~iil~~P~NPTG~v~s~~~l~~l~~~a~-~~~i~visDEiY~~l~~~g~~~~p~~~~~~~~~~~~i~~~s~SK~  239 (395)
T PRK07310        161 RTSKTKVVLLNSPSNPTGMIYSAEELRAIGEWAV-EHDILILADDIYGRLVYNGNQFTPISSLSEAIRKQTIVINGVSKT  239 (395)
T ss_pred             CCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHH-HCCEEEEECCCCEEEECCCCCCCCHHHHHHHHCCCCEEEECCCCC
T ss_conf             6589749998999798562663541467765565-268799943652100148988888888412432573588401235


Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEC
Q ss_conf             22344544422110122687531001222332222222222223467643222222110000000245530477603302
Q gi|254780602|r  241 YAMTGLRIGYAAGALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQGVPGIRYMIP  320 (400)
Q Consensus       241 ~~~~G~RiG~~v~~~~li~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~~~~~L~~~~g~~~~~p  320 (400)
                      |++||||+||+++++++++.+.+++++..++++++.|.+++.+|+..++|++++++.|++|++.+.+.|++++|+++..|
T Consensus       240 f~~~G~RiG~~v~~~~~i~~~~~~~~~~~~~~~~~~q~aa~~al~~~~~~~~~~~~~~~~r~~~~~~~l~~~~g~~~~~P  319 (395)
T PRK07310        240 YAMTGWRVGFAVGEPEIISAMSKIAGQTTSNLTAVSQYAAIEAFTGSQSSVEEMRLAFEERLNIIYPLLAQVPGFEVVKP  319 (395)
T ss_pred             CCCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECC
T ss_conf             67766548999779999999999986504781389999999999688899999999999999999998730899687269


Q ss_pred             CCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHCC
Q ss_conf             74089986264102332113322489899999999873979983502289972899962999999999999999998609
Q gi|254780602|r  321 DGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGHGPSIRISYAVSDAILEEACVRIKRFCHSLQ  400 (400)
Q Consensus       321 ~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~iRis~~~~~e~l~~al~rl~~~l~~l~  400 (400)
                      +||||+|+++++....     ....++.+|+.+|++++||+++||+.||.++||||+|+.+.++|++|++||++|+++-|
T Consensus       320 ~g~~~~w~~~~~~~~~-----~g~~d~~~~~~~ll~~~gV~v~PG~~FG~~~~vRl~~a~~~~~l~eal~RL~~~l~s~~  394 (395)
T PRK07310        320 QGAFYLFPNVKKAMEM-----KGYTDVTDFTTAILEEVGVALVTGAGFGAPENVRLSYATDLETLKEAVRRLHVFMESNE  394 (395)
T ss_pred             CEEEEEEEECCCHHCC-----CCCCCHHHHHHHHHHHCCEEEECCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCC
T ss_conf             8668981666511124-----78898999999999849999988976699998899980999999999999999998777


No 10 
>PRK07367 consensus
Probab=100.00  E-value=0  Score=680.93  Aligned_cols=385  Identities=43%  Similarity=0.787  Sum_probs=370.0

Q ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             78898738975899999999999986997266565897498899999999999838875699877898999999998642
Q gi|254780602|r    4 ISNILRRVQPSATLVAAQRVRDLRSKGIDVLCLTAGEPDFDMPENVKYAVVRAMERGETKYTAVAGISPLREAIVEKFRR   83 (400)
Q Consensus         4 ~s~~~~~l~~s~~~~~~~~~~~~~~~g~~ii~l~~G~p~~~~p~~i~~a~~~al~~~~~~Y~~~~G~~~lR~aia~~~~~   83 (400)
                      +|+|+++++||++++|.+++++++++|+|||+||+|+|||++|+.|++|+.++++++.++|+++.|.|+||++||+||++
T Consensus         1 ~a~r~~~~~~s~~~~i~~~a~~~~~~G~dvi~l~~G~pd~~~p~~i~~a~~~~~~~~~~~Y~~~~G~~~lR~aia~~~~~   80 (385)
T PRK07367          1 LAQRVGQVTPSLTLAIAAKAKAMKAEGLDVCSFSAGEPDFDTPAHIKAAAKKALDEGKTRYGPAAGEPALREAIAHKLRR   80 (385)
T ss_pred             CCHHHHHCCCCHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf             93556508936999999999999977998178989999998789999999999865887779999989999999999999


Q ss_pred             HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCC
Q ss_conf             10133332233233454333322222223322322223333232222222222222222222223222103331000122
Q gi|254780602|r   84 DNDLHYTSDQIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQAITP  163 (400)
Q Consensus        84 ~~g~~~~~e~I~it~G~~~~l~~~~~~~~~~Gd~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~  163 (400)
                      ++|+++++|||++|+|+++||.++++++++|||+|++++|+|+.|...++.+|++++.+|++++++|.+|++++++++++
T Consensus        81 ~~g~~~~~d~I~it~G~~~al~~~~~~l~~pGD~Vlv~~P~y~~y~~~~~~~g~~~v~v~~~~~~~~~~d~~~l~~~~~~  160 (385)
T PRK07367         81 ENGLDYQAENILVTNGGKQSLYNLMMALIDPGDEVIIPAPYWLSYPEMVKLAGGTPVIVPTDAATGFKITPEQLRQAITP  160 (385)
T ss_pred             HHCCCCCHHEEEECCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHCCCEEEEECCCCCCCCCCCHHHHHHHCCC
T ss_conf             85899985049990898999999999974899989990698777199999809857992136212767799999973786


Q ss_pred             CCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCC
Q ss_conf             12201211354210000123333211122333332011101221100000122332221112333225741465443223
Q gi|254780602|r  164 KTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAM  243 (400)
Q Consensus       164 ~~k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~~  243 (400)
                      ++|++++||||||||.+++++++++|+++|. ++|++||+||+|+++.|++.++.|+.++.++..+++|+++||||+|++
T Consensus       161 ~~k~~il~~P~NPTG~v~s~~~l~~l~~~a~-~~~~~iIsDEiY~~l~f~~~~~~s~~~~~~~~~~~~i~~~s~SK~~~~  239 (385)
T PRK07367        161 KTKLLVLNSPSNPTGMVYTPEEIAALAEVIV-EHDLYVVSDEIYEKILYDGAEHLSIGSLGPEIFQRTIISNGFAKAYSM  239 (385)
T ss_pred             CCEEEEECCCCCCCCCCCCHHHHHHHHHHHH-HCCEEEEECCCCHHHCCCCCCCCCHHHHCCCCCCCCHHHCCCCCCCCC
T ss_conf             7749997899798785665788889988887-558699711321121058977778888594202464010010003677


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEECCCC
Q ss_conf             44544422110122687531001222332222222222223467643222222110000000245530477603302740
Q gi|254780602|r  244 TGLRIGYAAGALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQGVPGIRYMIPDGA  323 (400)
Q Consensus       244 ~G~RiG~~v~~~~li~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~~~~~L~~~~g~~~~~p~g~  323 (400)
                      ||||+||+++++++++.+.+++++..++++++.|.+++.+|++.++|++++++.|++||+.+.+.|++++|+++..|+||
T Consensus       240 ~G~RiG~~~~~~~~i~~~~~~~~~~~~~~~~~~q~aa~~al~~~~~~~~~~~~~~~~rr~~l~~~l~~~~~~~~~~P~G~  319 (385)
T PRK07367        240 TGWRVGYLAGPVELIKAASSIQSHSTSNVCTFAQYGAIAALESPQDCVEEMRQAFAERRQLMLDGLNAIPGLSCPKPEGA  319 (385)
T ss_pred             CCCEEEEEECCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCEE
T ss_conf             61248878568999999998542055545789999999999584989999999999999999999983799675588847


Q ss_pred             EEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHC
Q ss_conf             8998626410233211332248989999999987397998350228997289996299999999999999999860
Q gi|254780602|r  324 FYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGHGPSIRISYAVSDAILEEACVRIKRFCHSL  399 (400)
Q Consensus       324 ~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~iRis~~~~~e~l~~al~rl~~~l~~l  399 (400)
                      ||+|+++++.          ..++.+|+++|++++||+++||+.||.++||||+|+.++++|++|++||++|+++|
T Consensus       320 ~~~w~~l~~~----------~~~~~~~~~~ll~~~gV~v~PG~~Fg~~~~~Rl~~a~~~~~l~ea~~RL~~~l~~l  385 (385)
T PRK07367        320 FYVFVDISKT----------GLGSLEFCRQLLEEHHVAAIPGIAFGADDHIRLSYATDLATIEKGLERLERFVRSL  385 (385)
T ss_pred             EEEEEECCCC----------CCCHHHHHHHHHHHCCEEEECCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHC
T ss_conf             9997888998----------99999999999996999997587469999399997098999999999999999849


No 11 
>PRK08443 consensus
Probab=100.00  E-value=0  Score=671.01  Aligned_cols=386  Identities=44%  Similarity=0.769  Sum_probs=364.8

Q ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             67889873897589999999999998699726656589749889999999999983887569987789899999999864
Q gi|254780602|r    3 FISNILRRVQPSATLVAAQRVRDLRSKGIDVLCLTAGEPDFDMPENVKYAVVRAMERGETKYTAVAGISPLREAIVEKFR   82 (400)
Q Consensus         3 ~~s~~~~~l~~s~~~~~~~~~~~~~~~g~~ii~l~~G~p~~~~p~~i~~a~~~al~~~~~~Y~~~~G~~~lR~aia~~~~   82 (400)
                      |+|+|++.+++|.++++.+++++++++|+|||+||+|+|||++|+.+++++.++++++.++|+++.|.++||++||+||+
T Consensus         1 ~~s~r~~~l~~s~~~~i~~~a~~~~~~g~dvi~l~~G~pd~~~p~~i~~a~~~a~~~~~~~Y~~~~G~~~lr~aia~~~~   80 (388)
T PRK08443          1 MLSKRIQVLSESITIAISTLAKELKAKGKDILSFSAGEPDFDTPQAIKDAAIKAIEKGFTKYTAVAGIPELLKAIATKLK   80 (388)
T ss_pred             CHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf             95577524896899999999999985699848898998999879999999999985599988999887999999999999


Q ss_pred             HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCC
Q ss_conf             21013333223323345433332222222332232222333323222222222222222222222322210333100012
Q gi|254780602|r   83 RDNDLHYTSDQIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQAIT  162 (400)
Q Consensus        83 ~~~g~~~~~e~I~it~G~~~~l~~~~~~~~~~Gd~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~  162 (400)
                      +++|++++||+|++|+|+++||.++++++++|||+|++++|+|+.|...+..+|+++++++++++++|.+|+++++++++
T Consensus        81 ~~~g~~~~pe~I~it~G~~~al~~~~~al~~pGD~Vlv~~P~Y~~y~~~~~~~g~~~v~v~~~~~~~~~~d~~~l~~~i~  160 (388)
T PRK08443         81 KDNNLDYETNEIITSNGAKHSLFNVFQALIEKGDEVIIPSPYWVTYPELVKYSGGVPVFIETDEENGFKITAEQLKKAIT  160 (388)
T ss_pred             HHHCCCCCHHEEEECCCHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHCCEEEEEEECCCCCCCCCHHHHHHHCC
T ss_conf             98589988312998688799999999998099998998268744239999980884799865543486779999997478


Q ss_pred             CCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCC
Q ss_conf             21220121135421000012333321112233333201110122110000012233222111233322574146544322
Q gi|254780602|r  163 PKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYA  242 (400)
Q Consensus       163 ~~~k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~  242 (400)
                      +++|++++||||||||++++++++++|+++| +++|++||+||+|++++|++. +.++..+.++..+++|+++||||+|+
T Consensus       161 ~~~k~iil~~P~NPTG~v~s~~~l~~l~~~a-~~~~~~ii~DE~Y~~l~~~~~-~~~~~~~~~~~~~~~I~i~S~SK~~~  238 (388)
T PRK08443        161 PKTKVLVLNTPSNPTGSVYSKEELEAIAKVL-KGTDIWVLSDEMYEKLVYDGE-FVSVASVSEDMFKRTITINGLSKSVA  238 (388)
T ss_pred             CCCEEEEECCCCCCCCCCCCHHHHHHHHHHH-HCCCCEEECCHHHHHHCCCCC-CCCHHHHHCCCCCCEEEECCCCHHCC
T ss_conf             7873999868989988476447899999986-235756742201243226998-78889972224467899803432005


Q ss_pred             CCCCCCCCCCCH-HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEC
Q ss_conf             344544422110-12268753100122233222222222222346-7643222222110000000245530477603302
Q gi|254780602|r  243 MTGLRIGYAAGA-LSLIKSMIVLQGQQTSGACSIAQWAAVEALNG-PQDFVVNNRKIFEYRRDLCVAQLQGVPGIRYMIP  320 (400)
Q Consensus       243 ~~G~RiG~~v~~-~~li~~l~~~~~~~~~~~~~~~q~a~~~~l~~-~~~~~~~~~~~~~~~r~~~~~~L~~~~g~~~~~p  320 (400)
                      +||||+||++++ +++++.+.++++...++++++.|.+++.+++. .+.|++++++.|++||+.+.+.|++++|+++..|
T Consensus       239 ~~G~RiG~~~~p~~~l~~~~~~~~~~~~~~~~~~~q~aa~~al~~~~~~~~~~~~~~~~~~r~~~~~~l~~~~g~~~~~P  318 (388)
T PRK08443        239 MTGWRFGYMASKNKKLIKAMKKLQSQSTSNINSITQKAAIPALNGECDKDIEKMRQAFEKRRDLAVDAINAIPGLSVYKP  318 (388)
T ss_pred             CCCCCEEEEEECCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECC
T ss_conf             86514699981869999999999744678701799999999985452478999999999999999999874789676168


Q ss_pred             CCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHCC
Q ss_conf             74089986264102332113322489899999999873979983502289972899962999999999999999998609
Q gi|254780602|r  321 DGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGHGPSIRISYAVSDAILEEACVRIKRFCHSLQ  400 (400)
Q Consensus       321 ~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~iRis~~~~~e~l~~al~rl~~~l~~l~  400 (400)
                      +||||+|+++++.          ..++.+|+.+|++++||+++||+.||.++||||||++++++|+||++||++|++++|
T Consensus       319 ~g~~~~w~~~~~~----------~~d~~~f~~~ll~~~gV~v~PG~~Fg~~g~vRl~~~~~~e~l~ea~~RL~~~l~~~r  388 (388)
T PRK08443        319 DGAFYLFVNIKKI----------EKDSMKFCKKLLEQEGVAVVPGIGFGMEGYFRLSFATSIESIKKGIERIANFVKSYK  388 (388)
T ss_pred             CEEEEEEEECCCC----------CCCHHHHHHHHHHHCCEEEECCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHCC
T ss_conf             8347997888888----------999999999999819999972743588985999982889999999999999999649


No 12 
>PRK09148 aminotransferase; Validated
Probab=100.00  E-value=0  Score=669.71  Aligned_cols=388  Identities=27%  Similarity=0.405  Sum_probs=365.4

Q ss_pred             CHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCC-CCCCCCCCCHHHHHHHHH
Q ss_conf             9367889873897589999999999998699726656589749889999999999983887-569987789899999999
Q gi|254780602|r    1 MVFISNILRRVQPSATLVAAQRVRDLRSKGIDVLCLTAGEPDFDMPENVKYAVVRAMERGE-TKYTAVAGISPLREAIVE   79 (400)
Q Consensus         1 m~~~s~~~~~l~~s~~~~~~~~~~~~~~~g~~ii~l~~G~p~~~~p~~i~~a~~~al~~~~-~~Y~~~~G~~~lR~aia~   79 (400)
                      ||..++|+++|+||++.++.+++++++++|+|||+||+|+|||++|+.|++++.+++.++. ++|++++|.|+||++||+
T Consensus         1 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~~G~~Vi~L~iG~Pd~~~P~~i~~a~~~a~~~~~~~~Y~~~~G~p~LReaia~   80 (406)
T PRK09148          1 MMEEFHRIRRLPPYVFEQVNRAKAAARAAGADIIDLGMGNPDLPTPQHIVDKLCETAGKPRTHRYSASKGIPGLRRAQAA   80 (406)
T ss_pred             CCCHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf             97445678638998899999999999867998288989899999789999999999749988878997585999999999


Q ss_pred             HHHHHCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf             8642101333322-332334543333222222233223222233332322222222222222222222232221033310
Q gi|254780602|r   80 KFRRDNDLHYTSD-QIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNFQVSPEKLE  158 (400)
Q Consensus        80 ~~~~~~g~~~~~e-~I~it~G~~~~l~~~~~~~~~~Gd~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~  158 (400)
                      ||++++|++++|| +|++|+|++++|.++++++++|||+|++++|+|+.|...+...|++++.++++++++|.+|++++.
T Consensus        81 ~~~~r~g~~~~p~~~Iivt~Ga~~al~~~~~al~~pGD~Vli~~P~Yp~y~~~~~~~g~~~~~v~~~~~~~~~~~le~~~  160 (406)
T PRK09148         81 YYARRFGVKLNPDTQVVATLGSKEGFANMAQAITAPGDVVLCPNPSYPIHAFGFIMAGGVIRSVPAEPDEEFFPALERAV  160 (406)
T ss_pred             HHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHCCCEEECCCCCCCCCCCCHHHHH
T ss_conf             99998589889887399887989999999999669999999807765878999998179158605776433330299999


Q ss_pred             CCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCC
Q ss_conf             00122122012113542100001233332111223333320111012211000001223322211123332257414654
Q gi|254780602|r  159 QAITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVS  238 (400)
Q Consensus       159 ~~i~~~~k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~S  238 (400)
                      +...+|+|+|++||||||||.+++++++++|+++| +++|++||+||+|++++|++.+++++..+ ++..+++|+++|||
T Consensus       161 ~~~~~ktk~iil~~P~NPTG~v~~~~~l~~l~~~a-~~~~i~visDEiY~~l~~~~~~~~s~~~~-~~~~~~~I~~~s~S  238 (406)
T PRK09148        161 RHSIPKPIALIVNYPSNPTAYVADLDFYKDLVAFA-KKHDIWILSDLAYSEIYFDGNPPPSVLQV-PGAKDVTVEFTSMS  238 (406)
T ss_pred             HHCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHH-HCCEEEEECCCCHHHHEECCCCCCCHHHC-CCHHHHHHHHCCCC
T ss_conf             74587644999778999888768999999999875-40548996342253513788767554317-43032211111420


Q ss_pred             CCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEE
Q ss_conf             43223445444221101226875310012223322222222222234676432222221100000002455304776033
Q gi|254780602|r  239 KAYAMTGLRIGYAAGALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQGVPGIRYM  318 (400)
Q Consensus       239 K~~~~~G~RiG~~v~~~~li~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~~~~~L~~~~g~~~~  318 (400)
                      |+|+|||||+||+++++++++.+.+++++..+|++++.|.++..+|+++++|++++++.|++||+.+.+.|++. |+++.
T Consensus       239 K~~~m~G~RiG~~v~~~~li~~l~~~~~~~~~~~~~~~Q~aa~~aL~~~~~~~~~~~~~y~~rrd~l~~~L~~~-g~~~~  317 (406)
T PRK09148        239 KTFSMAGWRMGFAVGNERLIAALTRVKSYLDYGAFTPIQVAATAALNGPQDCIAEMREVYKKRRDVLVESFGRA-GWDIP  317 (406)
T ss_pred             HHCCCCCCCEEEEECCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHC-CCEEC
T ss_conf             30367553359997599999999999976437887899999999975967899999999999999999988866-97643


Q ss_pred             ECCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCC--CCEEEEEEECCHHHHHHHHHHHHHHH
Q ss_conf             0274089986264102332113322489899999999873979983502289--97289996299999999999999999
Q gi|254780602|r  319 IPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGH--GPSIRISYAVSDAILEEACVRIKRFC  396 (400)
Q Consensus       319 ~p~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~--~~~iRis~~~~~e~l~~al~rl~~~l  396 (400)
                      .|+||||+|+++++...        ..++.+|+.+|++++||+++||+.||.  ++||||+|+.++++|++|++||++|+
T Consensus       318 ~P~G~~y~w~~l~~~~~--------~~~~~~f~~~Ll~~~gV~v~PG~~Fg~~g~~~iRlsfa~~~~~L~eal~Rl~~~l  389 (406)
T PRK09148        318 PPAASMFAWAPIPEAFR--------HLGSLEFSKLLVEKADVAVAPGVGFGEHGEGYVRIALVENEQRIRQAARNIKRFL  389 (406)
T ss_pred             CCCEEEEEEEECCCCCC--------CCCHHHHHHHHHHCCCEEEECCHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHH
T ss_conf             79836999988864347--------8999999999997399999897321889988599997388999999999999999


Q ss_pred             HHC
Q ss_conf             860
Q gi|254780602|r  397 HSL  399 (400)
Q Consensus       397 ~~l  399 (400)
                      +++
T Consensus       390 ~~~  392 (406)
T PRK09148        390 SSA  392 (406)
T ss_pred             HCC
T ss_conf             760


No 13 
>PRK05942 aspartate aminotransferase; Provisional
Probab=100.00  E-value=0  Score=666.84  Aligned_cols=385  Identities=23%  Similarity=0.367  Sum_probs=363.9

Q ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCC-CCCCCCCCHHHHHHHHHH
Q ss_conf             3678898738975899999999999986997266565897498899999999999838875-699877898999999998
Q gi|254780602|r    2 VFISNILRRVQPSATLVAAQRVRDLRSKGIDVLCLTAGEPDFDMPENVKYAVVRAMERGET-KYTAVAGISPLREAIVEK   80 (400)
Q Consensus         2 ~~~s~~~~~l~~s~~~~~~~~~~~~~~~g~~ii~l~~G~p~~~~p~~i~~a~~~al~~~~~-~Y~~~~G~~~lR~aia~~   80 (400)
                      |..|+|+++++||++..+.+++++++++|+|||+|++|+|||++|+.+++++.++++++.+ +|++++|.++||++||+|
T Consensus         6 ~~~~~r~~~~~~~~~~~~~~~a~~~~~~G~~vi~L~iG~Pd~~~P~~v~~a~~~al~~~~~~~Y~~~~G~~~LReaia~~   85 (394)
T PRK05942          6 ISPADRLQALPPYVFARLDELKARAREQGLDLIDLGMGNPDGAAPQPVIEAAIAALEDPQNHGYPPFEGTASFRQAITDW   85 (394)
T ss_pred             CCHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf             78889975299998999999999998659981888598999988899999999998388888989976859999999999


Q ss_pred             HHHHCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHC
Q ss_conf             642101333322-3323345433332222222332232222333323222222222222222222222322210333100
Q gi|254780602|r   81 FRRDNDLHYTSD-QIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQ  159 (400)
Q Consensus        81 ~~~~~g~~~~~e-~I~it~G~~~~l~~~~~~~~~~Gd~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~  159 (400)
                      |++++|++++|| +|++|+|++++|.++++++++|||+|++++|+|+.|...+...|+++++++++++++|.+|++++++
T Consensus        86 ~~~~~g~~~~p~~~v~vt~Ga~~al~~~~~al~~pGD~Vlv~~P~Yp~y~~~~~~~g~~~~~v~l~~~~~~~~d~~~l~~  165 (394)
T PRK05942         86 YHRRYGVELDPDSEALPLLGSKEGLTHLALAYVNPGDVVLVPSPAYPAHFRGPLIAGAQIYPIILKPENDWLIDLSSIPE  165 (394)
T ss_pred             HHHHHCCCCCCCCEEEECCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHH
T ss_conf             99986898898875998888899999999995799898997888867689999985998999970587688779999998


Q ss_pred             CCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCC
Q ss_conf             01221220121135421000012333321112233333201110122110000012233222111233322574146544
Q gi|254780602|r  160 AITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSK  239 (400)
Q Consensus       160 ~i~~~~k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK  239 (400)
                      ++++++|+|++||||||||.+++++++++|+++| ++||++||+||+|++++|++.++.++.++ ++..+++++++||||
T Consensus       166 ~i~~~tk~iil~~P~NPTG~v~~~e~l~~i~~~a-~~~~i~vIsDEiY~~l~~dg~~~~s~~~~-~~~~~~~i~~~S~SK  243 (394)
T PRK05942        166 EVAQQAKILYFNYPSNPTTATAPREFFEEIVAFA-RKYEILLVHDLCYAELAFDGYQPTSLLEI-PGAKDIGVEFHTLSK  243 (394)
T ss_pred             HHHCCCCEEEEECCCCCCCHHCCHHHHHHHHHHH-HCCCCEEEECCCCCCEEECCCCCCCHHHC-CCCCCCCEEECCCCC
T ss_conf             6112670899938988101220199999999988-51786797037410025568766557655-465344216603334


Q ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEE
Q ss_conf             32234454442211012268753100122233222222222222346764322222211000000024553047760330
Q gi|254780602|r  240 AYAMTGLRIGYAAGALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQGVPGIRYMI  319 (400)
Q Consensus       240 ~~~~~G~RiG~~v~~~~li~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~~~~~L~~~~g~~~~~  319 (400)
                      +|++||||+||+++++++++.+..+++....+++++.|.++..+|+.+++|++++++.|++||+++.+.|+++ |+++.+
T Consensus       244 ~~~~~G~RiG~ii~~~~~i~~l~~~~~~~~~~~~~~~q~aa~~al~~~~~~~~~~~~~~~~rrd~l~~~L~~~-g~~~~~  322 (394)
T PRK05942        244 TYNMAGWRVGFVVGNRDIIQGLRTLKTNLDYGIFSALQKAAETALQLPDSYLQQVQERYRQRRDFLIQGLGEL-GWDIPP  322 (394)
T ss_pred             CCCCCCCCEEEEECCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHC-CCEECC
T ss_conf             5678774259986799999999999985345767699999999985847789999999999999999989876-967537


Q ss_pred             CCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCC--CCEEEEEEECCHHHHHHHHHHHHHHHH
Q ss_conf             274089986264102332113322489899999999873979983502289--972899962999999999999999998
Q gi|254780602|r  320 PDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGH--GPSIRISYAVSDAILEEACVRIKRFCH  397 (400)
Q Consensus       320 p~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~--~~~iRis~~~~~e~l~~al~rl~~~l~  397 (400)
                      |+||||+|++++.           ..++.+|+.+|++++||+++||+.||.  ++||||||+.++++|+||++||++++.
T Consensus       323 p~g~~y~w~~~~~-----------~~~~~~f~~~ll~~~gV~v~PG~~Fg~~g~~~iRlsf~~~~~~l~ea~~Rl~~a~~  391 (394)
T PRK05942        323 TKATMYLWVPCPV-----------GMGSTDFALNVLQKTGVVVTPGNAFGEGGEGYVRISLIADCDRLGEALHRIKQAGI  391 (394)
T ss_pred             CCEEEEEEEECCC-----------CCCHHHHHHHHHHHCCEEEECCHHHCCCCCCEEEEEEECCHHHHHHHHHHHHHHHH
T ss_conf             8858899886899-----------97989999999984999998873117899987999971889999999999999998


Q ss_pred             HCC
Q ss_conf             609
Q gi|254780602|r  398 SLQ  400 (400)
Q Consensus       398 ~l~  400 (400)
                      ++|
T Consensus       392 ry~  394 (394)
T PRK05942        392 RYQ  394 (394)
T ss_pred             HHC
T ss_conf             529


No 14 
>PRK08068 transaminase; Reviewed
Probab=100.00  E-value=0  Score=659.70  Aligned_cols=381  Identities=25%  Similarity=0.388  Sum_probs=357.2

Q ss_pred             CHH-HHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCC-CCCCCCCCCHHHHHHHH
Q ss_conf             936-7889873897589999999999998699726656589749889999999999983887-56998778989999999
Q gi|254780602|r    1 MVF-ISNILRRVQPSATLVAAQRVRDLRSKGIDVLCLTAGEPDFDMPENVKYAVVRAMERGE-TKYTAVAGISPLREAIV   78 (400)
Q Consensus         1 m~~-~s~~~~~l~~s~~~~~~~~~~~~~~~g~~ii~l~~G~p~~~~p~~i~~a~~~al~~~~-~~Y~~~~G~~~lR~aia   78 (400)
                      |.+ +|+|++++++|.+.++.+++++++++|+|||+|++|+||||+|++|++|++++++++. ++|++++|+++||++||
T Consensus         1 m~~~~s~r~~~~~~~~~~~i~~~~~~~~~~G~~vi~l~~G~Pd~~~p~~i~~a~~~~~~~~~~~~Y~~~~G~~~LR~aia   80 (389)
T PRK08068          1 MEFEPSKLLKQLPKQFFASLVAKVNKKVAEGHDVINLGQGNPDQPTPEHIVEALQEAAENPANHKYSPFRGYPFLKEAAA   80 (389)
T ss_pred             CCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH
T ss_conf             99706789764896789999999999996799918999988999989999999999973876788899858099999999


Q ss_pred             HHHHHHCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf             98642101333322-33233454333322222223322322223333232222222222222222222223222103331
Q gi|254780602|r   79 EKFRRDNDLHYTSD-QIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNFQVSPEKL  157 (400)
Q Consensus        79 ~~~~~~~g~~~~~e-~I~it~G~~~~l~~~~~~~~~~Gd~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~~~~~~~d~~~l  157 (400)
                      +||++++|++++|| +|++|+|+++||+++++++++|||+|++++|+|+.|...++++|++++.+|++++++|.+|+++|
T Consensus        81 ~~~~~~~g~~~~p~~eI~vt~Ga~~al~~~~~al~~pGD~Vlv~~P~Yp~y~~~~~~~g~~~~~vpl~~~~~~~~d~e~l  160 (389)
T PRK08068         81 DFYKREYGVTLDPETEVAILFGGKAGLVELPQCLLNPGDTALVPDPGYPDYLSGVALARAQFETMPLIAENNFLPDYEKI  160 (389)
T ss_pred             HHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHCCCEEEEEECCCCCCCCCCHHHH
T ss_conf             99999868998988809982788999999999966999989980788986499999718756899636667986899999


Q ss_pred             HCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCC
Q ss_conf             00012212201211354210000123333211122333332011101221100000122332221112333225741465
Q gi|254780602|r  158 EQAITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGV  237 (400)
Q Consensus       158 ~~~i~~~~k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~  237 (400)
                      +++++++||+|++||||||||.+++.+++++|+++| ++||++||+||+|++++|++.++.++++. ++..+++|+++||
T Consensus       161 ~~~i~~~tk~iil~~P~NPTG~v~~~~~l~~l~~la-~~~~i~visDEiY~~l~~~~~~p~s~l~~-~~~~~~~I~~~S~  238 (389)
T PRK08068        161 PESVAEKAKLMYLNYPNNPTGAVATKAFFEETVAFA-KKHNIGVVHDFAYGAIGFDGQKPVSFLQT-PGAKDVGIEIYTL  238 (389)
T ss_pred             HHHCHHCCEEEEECCCCCCCCHHCCHHHHHHHHHHH-HCCCEEEEECCCCCCEEECCCCCCCCCCC-CCCCCCCEEEECC
T ss_conf             874310465999889979846120599999999987-10777999626521114678766411036-5320134066103


Q ss_pred             CCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEE
Q ss_conf             44322344544422110122687531001222332222222222223467643222222110000000245530477603
Q gi|254780602|r  238 SKAYAMTGLRIGYAAGALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQGVPGIRY  317 (400)
Q Consensus       238 SK~~~~~G~RiG~~v~~~~li~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~~~~~L~~~~g~~~  317 (400)
                      ||+|++||||+||+++++++++.+..++++..++++.+.|.+++.+|...++|+.++++.|++||+.+.+.|+++ |+++
T Consensus       239 SK~~~~~G~RiG~~v~~~~~i~~l~~~~~~~~~~~~~~~q~aa~~al~~~~~~~~~~~~~~~~rr~~~~~~l~~~-g~~~  317 (389)
T PRK08068        239 SKTFNMAGWRVAFAVGNESVIEAINLLQDHLFVSLFGAIQDAAIEALLSDQSCVQELVARYESRRNAFISACREI-GWEV  317 (389)
T ss_pred             CCCCCCCCCEEEEEECCHHHHHHHHHHCCCCEECCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHC-CCEE
T ss_conf             565578631179997799999999973025300478499999999986888899999999999999999999975-9760


Q ss_pred             EECCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCC--CCEEEEEEECCHHHHHHHHHHHHHH
Q ss_conf             30274089986264102332113322489899999999873979983502289--9728999629999999999999999
Q gi|254780602|r  318 MIPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGH--GPSIRISYAVSDAILEEACVRIKRF  395 (400)
Q Consensus       318 ~~p~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~--~~~iRis~~~~~e~l~~al~rl~~~  395 (400)
                      ..|+||||+|+++++           ..++.+|+.+|++++||+++||+.||.  ++||||||+.++++|++|++||++.
T Consensus       318 ~~P~G~~y~w~~~~~-----------~~~~~~~~~~ll~~~gV~v~PG~~Fg~~g~~~vRl~fa~~~e~l~ea~~RL~~l  386 (389)
T PRK08068        318 DAPKGSFFAWMPVPK-----------GYTSEQFADLLLEKAHVAVAPGNGFGEHGEGYVRVGLLIDEERLREAINRIAKL  386 (389)
T ss_pred             CCCCEEEEEEEECCC-----------CCCHHHHHHHHHHCCCEEEECCHHHCCCCCCEEEEEEECCHHHHHHHHHHHHHC
T ss_conf             588813599786899-----------989899999999709999987854378996969999838999999999999724


No 15 
>PRK07212 consensus
Probab=100.00  E-value=0  Score=659.12  Aligned_cols=377  Identities=42%  Similarity=0.713  Sum_probs=356.5

Q ss_pred             CHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             93678898738975899999999999986997266565897498899999999999838875699877898999999998
Q gi|254780602|r    1 MVFISNILRRVQPSATLVAAQRVRDLRSKGIDVLCLTAGEPDFDMPENVKYAVVRAMERGETKYTAVAGISPLREAIVEK   80 (400)
Q Consensus         1 m~~~s~~~~~l~~s~~~~~~~~~~~~~~~g~~ii~l~~G~p~~~~p~~i~~a~~~al~~~~~~Y~~~~G~~~lR~aia~~   80 (400)
                      ||++|+|+.+++||+++++.+++++++++|+|||+||+|+|||++|+.+++|+.++++++.++|+++.|.++||++||+|
T Consensus         1 m~~~s~r~~~~~~s~~~~i~~~a~~~~~~G~dvi~l~~g~pdf~~p~~i~ea~~~~~~~~~~~Y~~~~G~~~lr~aia~~   80 (378)
T PRK07212          1 MMMLSSRLARVEPSATLAISNKAKELEAEGVDVISLSVGEPDFDTPKHICDAAIDAMDRGKTHYAPSNGIPELREAIAEK   80 (378)
T ss_pred             CCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH
T ss_conf             90578888538946999999999999866998379989889999889999999999857999889999999999999999


Q ss_pred             HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCC
Q ss_conf             64210133332233233454333322222223322322223333232222222222222222222223222103331000
Q gi|254780602|r   81 FRRDNDLHYTSDQIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQA  160 (400)
Q Consensus        81 ~~~~~g~~~~~e~I~it~G~~~~l~~~~~~~~~~Gd~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~  160 (400)
                      |++++|++++||+|++|+|+++||.++++++++|||+|++++|+|+.|...++.+|++++.+|++.++++.  .++++++
T Consensus        81 ~~~~~g~~v~p~~I~vt~G~~~al~~~~~~l~~pGD~Vlv~~P~Y~~y~~~~~~~g~~~v~vpl~~~~~~~--~~~l~~~  158 (378)
T PRK07212         81 LRTENHIDVTPDDVIVTPGAKQAIYEAMMAVLDDGDEVILLDPAWVSYEACIKFAGGKPVWVPLNPEDFQL--PDDLAEA  158 (378)
T ss_pred             HHHHHCCCCCHHEEEEECCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHCCCEEEEEECCCCCCCC--HHHHHHH
T ss_conf             99984899873319994789999999999847998989981796342568999719969998355567852--8999985


Q ss_pred             CCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCC
Q ss_conf             12212201211354210000123333211122333332011101221100000122332221112333225741465443
Q gi|254780602|r  161 ITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKA  240 (400)
Q Consensus       161 i~~~~k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~  240 (400)
                      +++++|++++||||||||.+||++++++|+++| ++||++||+||+|.+++|++ +++++.++. +..+++|+++||||+
T Consensus       159 i~~~~k~i~l~~P~NPtG~v~s~~~l~~l~~la-~~~~~~ii~DEiY~~l~~~~-~~~~~~~l~-~~~~~~i~~~S~SK~  235 (378)
T PRK07212        159 ITDKTKLIVVNSPSNPTGAVFGKESLQGVADLA-VDHDLYVLSDEIYEKIIYGK-EHISLGSLD-GMADRTITINGFSKA  235 (378)
T ss_pred             CCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHH-HHHCCEECCCCCHHHHHCCC-CCCCHHHCC-CCCCCCCEECCCCCC
T ss_conf             665782999889979989884717688999977-74245013300115440488-777743344-545554033354213


Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEC
Q ss_conf             22344544422110122687531001222332222222222223467643222222110000000245530477603302
Q gi|254780602|r  241 YAMTGLRIGYAAGALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQGVPGIRYMIP  320 (400)
Q Consensus       241 ~~~~G~RiG~~v~~~~li~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~~~~~L~~~~g~~~~~p  320 (400)
                      |++||||+||+++|+++++.+.+++++..++++++.|.+++.++++.++|++++++.|++||+.+.+.|+++ |+++..|
T Consensus       236 ~~l~GlRvG~~~~~~~~i~~~~~~~~~~~~~~~~~~q~aa~~al~~~~~~l~~~~~~~~~~r~~l~~~L~~~-g~~~~~p  314 (378)
T PRK07212        236 YAMTGWRLGYLTAPEEIIKQMGKVQSHSVSSATTFVQYGGVAALKGPQDCVEEMRDEFEARRDILIDGLADM-GLECAPP  314 (378)
T ss_pred             CCCCCEEEEEEECCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHC-CCEECCC
T ss_conf             677760489897399999999999864557887699999999996877889999999999999999999976-9866268


Q ss_pred             CCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHH
Q ss_conf             7408998626410233211332248989999999987397998350228997289996299999999999999999
Q gi|254780602|r  321 DGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGHGPSIRISYAVSDAILEEACVRIKRFC  396 (400)
Q Consensus       321 ~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~iRis~~~~~e~l~~al~rl~~~l  396 (400)
                      +||||+|++++             .++.+|++++++++||+++||+.||.+||+||||+.++++|++|++||+++|
T Consensus       315 ~g~~~~~~~~~-------------~~~~~~~~~ll~~~gV~v~pG~~Fg~~g~iRl~~a~~~e~l~eal~RL~~~L  377 (378)
T PRK07212        315 DGAFYAFPNVD-------------GDDTAVAERLLKDAHVAVTPGSAFGAPGWIRISYATSMERLKEALERLEKVL  377 (378)
T ss_pred             CEEEEEEEECC-------------CCHHHHHHHHHHHCCEEEEECCCCCCCCEEEEEEECCHHHHHHHHHHHHHHH
T ss_conf             81699999789-------------9999999999970989998174459999399998089999999999999985


No 16 
>PRK09276 aspartate aminotransferase; Provisional
Probab=100.00  E-value=0  Score=658.41  Aligned_cols=380  Identities=28%  Similarity=0.493  Sum_probs=359.7

Q ss_pred             CHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCC-CCCCCCCCCHHHHHHHHH
Q ss_conf             9367889873897589999999999998699726656589749889999999999983887-569987789899999999
Q gi|254780602|r    1 MVFISNILRRVQPSATLVAAQRVRDLRSKGIDVLCLTAGEPDFDMPENVKYAVVRAMERGE-TKYTAVAGISPLREAIVE   79 (400)
Q Consensus         1 m~~~s~~~~~l~~s~~~~~~~~~~~~~~~g~~ii~l~~G~p~~~~p~~i~~a~~~al~~~~-~~Y~~~~G~~~lR~aia~   79 (400)
                      ||.+|+|+.+++||++++|.+++++++++|+|||+||+|+|||++|+.|++|+.++++++. ++|+++.|.++||++||+
T Consensus         1 m~~~s~r~~~~~~~~~~~i~~~a~~~~~~G~dvi~l~~G~pd~~~p~~i~~al~~a~~~~~~~~Y~~~~G~~~LReaia~   80 (385)
T PRK09276          1 MFKLADRIENLPPYLFAEIDKKKAEKIARGVDVISLGIGDPDMPTPKHIVEAMKKAAEDPANHQYPSYEGMLEFRKAVAD   80 (385)
T ss_pred             CCCHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH
T ss_conf             97567897508988999999999999847998188979989999899999999999808777665997271999999999


Q ss_pred             HHHHHCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf             8642101333322-332334543333222222233223222233332322222222222222222222232221033310
Q gi|254780602|r   80 KFRRDNDLHYTSD-QIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNFQVSPEKLE  158 (400)
Q Consensus        80 ~~~~~~g~~~~~e-~I~it~G~~~~l~~~~~~~~~~Gd~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~  158 (400)
                      ||++++|++++|| +|++|+|+++||.++++++++|||+|++++|+|+.|...+...|++++.+|++++++|.+|+|+++
T Consensus        81 ~~~~~~g~~~~p~~~vv~t~Ga~~al~~~~~~l~~pGD~Vli~~P~Y~~y~~~~~~~g~~~v~vp~~~~~~~~~d~~~l~  160 (385)
T PRK09276         81 WYKRRFGVELDPETEVISLIGSKEGIAHIPLAFVNPGDYVLVPDPGYPVYAIGTIFAGGEPYFMPLKEENGFLPDLDAIP  160 (385)
T ss_pred             HHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHCCCEEEECCCCCCCCCCCCHHHHH
T ss_conf             99998298768677699878844999999999739999899888866205999998699785068666679857999999


Q ss_pred             CCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCC
Q ss_conf             00122122012113542100001233332111223333320111012211000001223322211123332257414654
Q gi|254780602|r  159 QAITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVS  238 (400)
Q Consensus       159 ~~i~~~~k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~S  238 (400)
                      +++.+++|++++||||||||.+||++++++|+++| ++||++||+||+|++++|++.+++++.++ ++..+++|+++|||
T Consensus       161 ~~~~~~~k~iil~~P~NPTG~v~s~~~l~~l~~la-~~~~i~ii~DEiY~~l~~~~~~~~s~~~~-~~~~~~~i~~~S~S  238 (385)
T PRK09276        161 EDVARKAKLMFINYPNNPTGAVADLEFFEKVVDFA-KKYDIIVCHDNAYSEIAYDGYKPPSFLEV-PGAKDVGIEFHSLS  238 (385)
T ss_pred             HHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHH-CCCCCEEEEHHHHHHHCCCCCCCCCHHHC-CCCCCCCCEECCCC
T ss_conf             75101672999899989855111188999998763-25575697544422210388888776553-45424430304654


Q ss_pred             CCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEE
Q ss_conf             43223445444221101226875310012223322222222222234676432222221100000002455304776033
Q gi|254780602|r  239 KAYAMTGLRIGYAAGALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQGVPGIRYM  318 (400)
Q Consensus       239 K~~~~~G~RiG~~v~~~~li~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~~~~~L~~~~g~~~~  318 (400)
                      |+|++||||+||+++++++++.+.+++++..++++.+.|.++..+++..++|++++++.|++||+.+.+.|+++ |+++.
T Consensus       239 K~~~~~G~RvG~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~al~~~~~~~~~~~~~~~~rr~~~~~~L~~~-g~~~~  317 (385)
T PRK09276        239 KTYNMTGWRIGFAVGNADLIAGLGKVKSNVDSGVFQAIQEAAIAALNGPQDVVEELRAIYQERRDILVEGLNSL-GWEVE  317 (385)
T ss_pred             CCCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHC-CCEEE
T ss_conf             55688762079997599999999999976557710999999999984869999999999899999999999876-98662


Q ss_pred             ECCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCCC--CEEEEEEECCHHHHHHHHHHHHH
Q ss_conf             02740899862641023321133224898999999998739799835022899--72899962999999999999999
Q gi|254780602|r  319 IPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGHG--PSIRISYAVSDAILEEACVRIKR  394 (400)
Q Consensus       319 ~p~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~--~~iRis~~~~~e~l~~al~rl~~  394 (400)
                      +|+||||+|+++++           ..++.+|+.+|++++||+++||+.||.+  +|+||+|+.++++|+||++||++
T Consensus       318 ~p~gg~~~w~~l~~-----------~~~~~~~~~~ll~~~gV~v~PG~~Fg~~g~~~iRl~~a~~~e~l~eal~Rl~k  384 (385)
T PRK09276        318 KPKATFYVWAPVPK-----------GYTSAEFATLLLDKAGIVVTPGNGFGTAGEGYFRIALTVPDERIEEAVERIKK  384 (385)
T ss_pred             CCCEEEEEEEECCC-----------CCCHHHHHHHHHHHCCEEEECCHHHCCCCCCEEEEEEECCHHHHHHHHHHHHC
T ss_conf             68857799788999-----------98989999999981999998874218899886999975999999999999842


No 17 
>PRK08960 hypothetical protein; Provisional
Probab=100.00  E-value=0  Score=656.06  Aligned_cols=382  Identities=29%  Similarity=0.441  Sum_probs=354.2

Q ss_pred             CHH-HHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             936-7889873897589999999999998699726656589749889999999999983887569987789899999999
Q gi|254780602|r    1 MVF-ISNILRRVQPSATLVAAQRVRDLRSKGIDVLCLTAGEPDFDMPENVKYAVVRAMERGETKYTAVAGISPLREAIVE   79 (400)
Q Consensus         1 m~~-~s~~~~~l~~s~~~~~~~~~~~~~~~g~~ii~l~~G~p~~~~p~~i~~a~~~al~~~~~~Y~~~~G~~~lR~aia~   79 (400)
                      |.+ +|+|+++++||.++++.+++++++++|+|||+|++|+|||++|+.|++++.++++++.++|++++|.|+||++||+
T Consensus         1 m~~~~s~r~~~i~~s~~~~i~~~a~~~~~~G~~vi~l~~G~pdf~~p~~i~~a~~~a~~~~~~~Y~~~~G~~~LReaia~   80 (387)
T PRK08960          1 MAQRYSRRSRDIEPFHVMALLARANELEAAGHDVIHLEIGEPDFTTAAPIVAAGQAALAAGHTRYTAARGLPALREAIAG   80 (387)
T ss_pred             CCHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
T ss_conf             97178899844996799999999999997799807889948999889999999999985389988998772999999999


Q ss_pred             HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHC
Q ss_conf             86421013333223323345433332222222332232222333323222222222222222222222322210333100
Q gi|254780602|r   80 KFRRDNDLHYTSDQIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQ  159 (400)
Q Consensus        80 ~~~~~~g~~~~~e~I~it~G~~~~l~~~~~~~~~~Gd~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~  159 (400)
                      ||++++|++++||+|++|+|++++|+++++++++|||+|++++|+|+.|...++..|++++.+|++++++|.+|++.+++
T Consensus        81 ~~~~~~g~~~~~d~I~vt~G~~~al~~~~~~l~~pGD~Vlv~~P~Yp~~~~~~~~~~~~~~~vp~~~~~~~~~~~~~le~  160 (387)
T PRK08960         81 FYAQRYGLDVDPERILVTPGGSGALLLASSLLVDPGKHWLLADPGYPCNRHFLRLVEGAAQLVPVGPDTRYQLTPALVER  160 (387)
T ss_pred             HHHHHHCCCCCHHHEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHCCEEEEEECCCCCCCCCCHHHHHH
T ss_conf             99998589998432898086699999999995699987998178765528999985374499975754477889999997


Q ss_pred             CCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCC
Q ss_conf             01221220121135421000012333321112233333201110122110000012233222111233322574146544
Q gi|254780602|r  160 AITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSK  239 (400)
Q Consensus       160 ~i~~~~k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK  239 (400)
                      .+++++|++++||||||||.+++++++++|+++| ++|+++||+||+|++++|++.. +++...    .+++++++||||
T Consensus       161 ~~~~~~~~iil~nP~NPTG~v~s~~~l~~l~~~a-~~~~~~vI~DEiY~~l~~~~~~-~s~~~~----~~~~i~i~S~SK  234 (387)
T PRK08960        161 HWDSDSVGALVASPANPTGTLLSRDELAALSQAL-KARGGHLVVDEIYHGLTYGVDA-ASVLEV----DDSAFVLNSFSK  234 (387)
T ss_pred             HCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHH-HHCCCEEEEECCCHHHCCCCCC-CCCCCC----CCCEEEEEECCC
T ss_conf             2787872999768989886314689999999987-6239779984461441258986-531136----787799950643


Q ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCHHHHHHCCCCCEEE
Q ss_conf             322344544422110122687531001222332222222222223467-6432222221100000002455304776033
Q gi|254780602|r  240 AYAMTGLRIGYAAGALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGP-QDFVVNNRKIFEYRRDLCVAQLQGVPGIRYM  318 (400)
Q Consensus       240 ~~~~~G~RiG~~v~~~~li~~l~~~~~~~~~~~~~~~q~a~~~~l~~~-~~~~~~~~~~~~~~r~~~~~~L~~~~g~~~~  318 (400)
                      +|++||||+||+++|+++++.+.++++....+++.+.|.+++.+++.. .+++++.+..|++||+++.+.|++++.....
T Consensus       235 ~~~~~G~RiG~~v~p~~~i~~~~~~~~~~~~~~~~~~Q~aa~~al~~~~~~~~~~~~~~~~~rrd~l~~~l~~~~~~~~~  314 (387)
T PRK08960        235 YFGMTGWRLGWLVAPPAAVPELEKLAQNLYISASSMAQHAALACFEPETIAILEARRAEFQRRRDFLLPALRELGFGIAV  314 (387)
T ss_pred             CCCCCCCEEEEEEECHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf             25577630589998899999999999854377987999999999621559999999999999999999999975996045


Q ss_pred             ECCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCC---CCEEEEEEECCHHHHHHHHHHHHHH
Q ss_conf             0274089986264102332113322489899999999873979983502289---9728999629999999999999999
Q gi|254780602|r  319 IPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGH---GPSIRISYAVSDAILEEACVRIKRF  395 (400)
Q Consensus       319 ~p~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~---~~~iRis~~~~~e~l~~al~rl~~~  395 (400)
                      .|+||||+|++++..          ..++.+|+.+|++++||+++||+.||.   ++||||||+.++++|+||++||++|
T Consensus       315 ~P~G~~y~w~~~~~~----------~~d~~~~~~~ll~~~gV~v~PG~~Fg~~~~~~~~Rls~~~~~~~l~eal~RL~~~  384 (387)
T PRK08960        315 EPQGAFYLYADISAF----------GGDAFAFCRHFLETEHVAFTPGLDFGRHQAGHHVRFAYTQSLPRLQEAVERIARG  384 (387)
T ss_pred             CCCEEEEEEEECCCC----------CCCHHHHHHHHHHHCCEEEECCHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHHH
T ss_conf             898666997888888----------9999999999998699999747220899999989999769999999999999999


Q ss_pred             HHH
Q ss_conf             986
Q gi|254780602|r  396 CHS  398 (400)
Q Consensus       396 l~~  398 (400)
                      |++
T Consensus       385 Lks  387 (387)
T PRK08960        385 LRS  387 (387)
T ss_pred             HCC
T ss_conf             667


No 18 
>PRK07366 succinyldiaminopimelate transaminase; Validated
Probab=100.00  E-value=0  Score=656.50  Aligned_cols=383  Identities=22%  Similarity=0.331  Sum_probs=355.0

Q ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCC-CCCCCCCCCHHHHHHHHHH
Q ss_conf             367889873897589999999999998699726656589749889999999999983887-5699877898999999998
Q gi|254780602|r    2 VFISNILRRVQPSATLVAAQRVRDLRSKGIDVLCLTAGEPDFDMPENVKYAVVRAMERGE-TKYTAVAGISPLREAIVEK   80 (400)
Q Consensus         2 ~~~s~~~~~l~~s~~~~~~~~~~~~~~~g~~ii~l~~G~p~~~~p~~i~~a~~~al~~~~-~~Y~~~~G~~~lR~aia~~   80 (400)
                      |.+|+|++.+++|.+.++.+++++++++|+|||+||+|+|||++|+.+++++++++.++. +||+++.|.|+||++||+|
T Consensus         1 m~~~~r~~~~~~~~~~~~~~~~~~~~~~G~~vi~l~iG~pdf~~P~~i~~a~~~a~~~~~~~gY~~~~G~~~lR~aIa~~   80 (388)
T PRK07366          1 MQFAQRLQPLQSNVFADMDRAKAQARAAGKEVIDLSLGSSDLPAPAHALEAIAQSLQDPSTHGYLLFHGTLPFREAAAAW   80 (388)
T ss_pred             CCHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf             93555655289489999999999998589984987086899998899999999998097676789875789999999999


Q ss_pred             HHHHCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHC
Q ss_conf             642101333322-3323345433332222222332232222333323222222222222222222222322210333100
Q gi|254780602|r   81 FRRDNDLHYTSD-QIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQ  159 (400)
Q Consensus        81 ~~~~~g~~~~~e-~I~it~G~~~~l~~~~~~~~~~Gd~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~  159 (400)
                      |++++|++++|| +|++|+|+++|+.++++++++|||+|++++|+|+.|...+.++|++++++|++++++|.+|++++++
T Consensus        81 ~~~~~g~~~~pe~~V~~t~G~~~al~~~~~al~~pGD~Vli~~P~Y~~y~~~~~~~G~~~~~vpl~~~~~~~~d~~~l~~  160 (388)
T PRK07366         81 YEQRFGLAVDPETEVLPLIGSQEGTAHLPLALLNPGDFALLLDPGYPSHAGGVYLAGGQIYPMPLRAENDFLPVFADIPT  160 (388)
T ss_pred             HHHHHCCCCCCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHH
T ss_conf             99997898898873998478899999999996699998998258776518999985985799754666798479999987


Q ss_pred             CCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC-CCCCCCCCCCCEEEEECCCC
Q ss_conf             01221220121135421000012333321112233333201110122110000012233-22211123332257414654
Q gi|254780602|r  160 AITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFS-NIVNVEPSLYERTLVVNGVS  238 (400)
Q Consensus       160 ~i~~~~k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~-s~~~~~~~~~~~~i~~~S~S  238 (400)
                      .+++++|++++||||||||.+||++++++|+++|. +||++||+||+|++++|++..++ ++.... ...+++|+++|||
T Consensus       161 ~i~~~tk~iil~~P~NPTG~v~s~~~l~~i~~~a~-~~~i~lisDEiY~~l~~~~~~~~p~~~~~~-~~~~~~i~~~S~S  238 (388)
T PRK07366        161 EVLAQARLMVLSYPHNPTTAIAPLSFFQEAVAFCQ-QHDLVLVHDFPYVDLVFDGEVEPPSILQAD-PEKSVSIEFFTLS  238 (388)
T ss_pred             HHHHCCCEEEECCCCCCCCEEEEHHHHHHHHHHHH-HCCEEEECCCEEEEEEECCCCCCCHHHHCC-CCCCEEEEEECCC
T ss_conf             40422829998589898466803888888999874-055078622021445866876661354257-2206179973353


Q ss_pred             CCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEE
Q ss_conf             43223445444221101226875310012223322222222222234676432222221100000002455304776033
Q gi|254780602|r  239 KAYAMTGLRIGYAAGALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQGVPGIRYM  318 (400)
Q Consensus       239 K~~~~~G~RiG~~v~~~~li~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~~~~~L~~~~g~~~~  318 (400)
                      |+|++||||+||+++++++++.+..+++....+.+...|.+++.++..+++|+++.++.|++||+.+.+.|+++ |+.+.
T Consensus       239 K~f~~~G~RiG~~i~~~~li~~~~~~~~~~~~~~~~~~~~~a~~al~~~~~~~~~~~~~~~~rr~~~~~~L~~~-g~~~~  317 (388)
T PRK07366        239 KSYNMGGFRIGFAIGNAQLIAALRQIKAVVDFNQYRGILNGAIAALTGPQACVQQTVQIFRQRRDAFINALHRI-GWPVP  317 (388)
T ss_pred             CCCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHC-CCEEE
T ss_conf             25788765189996799999999999875476543999999999996888999999999999999999999977-98750


Q ss_pred             ECCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCC--CCEEEEEEECCHHHHHHHHHHHHHHH
Q ss_conf             0274089986264102332113322489899999999873979983502289--97289996299999999999999999
Q gi|254780602|r  319 IPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGH--GPSIRISYAVSDAILEEACVRIKRFC  396 (400)
Q Consensus       319 ~p~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~--~~~iRis~~~~~e~l~~al~rl~~~l  396 (400)
                      .|+||||+|++++...         ..++.+|+.+|++++||+++||+.||.  ++|+|++|+.++++|+||++||++||
T Consensus       318 ~P~g~~y~w~~l~~~~---------~~~~~ef~~~Ll~~~gV~v~PG~~Fg~~g~g~iRl~~a~~~~~l~eal~Rl~~~l  388 (388)
T PRK07366        318 LPEATMYVWAKLPEPW---------QGNSVEFCTQLVAQTGVAASPGSGFGKSGEGYVRFALVHDPDILEEAVERIAAFL  388 (388)
T ss_pred             CCCEEEEEEEECCCCC---------CCCHHHHHHHHHHHCCEEEECCHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHC
T ss_conf             7985779978789878---------8998999999998399999766465889998699996299999999999999869


No 19 
>PRK07568 aspartate aminotransferase; Provisional
Probab=100.00  E-value=0  Score=656.16  Aligned_cols=382  Identities=30%  Similarity=0.508  Sum_probs=354.3

Q ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             36788987389758999999999999869972665658974988999999999998388756998778989999999986
Q gi|254780602|r    2 VFISNILRRVQPSATLVAAQRVRDLRSKGIDVLCLTAGEPDFDMPENVKYAVVRAMERGETKYTAVAGISPLREAIVEKF   81 (400)
Q Consensus         2 ~~~s~~~~~l~~s~~~~~~~~~~~~~~~g~~ii~l~~G~p~~~~p~~i~~a~~~al~~~~~~Y~~~~G~~~lR~aia~~~   81 (400)
                      |.+|+|++.++||+++++.+++++++++|++||+|++|+||||+|+.+++|++ ++..+.++|+++.|.++||++||+||
T Consensus         1 M~~s~r~~~l~~s~ir~~~~~a~~~~~~G~~vi~l~iG~Pd~~~P~~~~~a~~-~~~~~~~~Y~~~~G~~~LReaia~~~   79 (396)
T PRK07568          1 MKISKRVKEMPASPIRKLVPYADAAKKRGIKVYHLNIGQPDIKTPEVFFEAIR-NYDEEVLAYSHSAGIDSLREAFSKYY   79 (396)
T ss_pred             CCCCHHHHCCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHH-HHCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf             96435845399888999999999999779980888798899987699999998-50737898899867199999999999


Q ss_pred             HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CHHHHHHCC
Q ss_conf             4210133332233233454333322222223322322223333232222222222222222222223222-103331000
Q gi|254780602|r   82 RRDNDLHYTSDQIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNFQ-VSPEKLEQA  160 (400)
Q Consensus        82 ~~~~g~~~~~e~I~it~G~~~~l~~~~~~~~~~Gd~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~~~~~~-~d~~~l~~~  160 (400)
                      ++ +|+++++|+|++|+|+++||.++++++++|||+|++++|+|+.|...++.+|+++++++++++++|. +++++++++
T Consensus        80 ~~-~g~~~~~d~I~iT~Ga~~al~~~~~~l~~pGD~Vlv~~P~y~~y~~~~~~~g~~~v~v~~~~e~g~~lp~~~~l~~~  158 (396)
T PRK07568         80 KR-FNIDFDKDEIIVTNGGSEAILFALMAICDPGDEIIVPEPFYANYNGFATSAGVKIVPVTTKIEEGFHLPKKEEIEKL  158 (396)
T ss_pred             HH-HCCCCCHHEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHCCCEEEECCCCHHHCCCCCCHHHHHHH
T ss_conf             98-68898822289857806999999997279989899938975325999998498785167672118878969999974


Q ss_pred             CCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCC
Q ss_conf             12212201211354210000123333211122333332011101221100000122332221112333225741465443
Q gi|254780602|r  161 ITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKA  240 (400)
Q Consensus       161 i~~~~k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~  240 (400)
                      +++++|+|++||||||||.++|.+++++|+++| ++||++||+||+|++|+|++.+++|+.++ ++..+++|+++||||+
T Consensus       159 ~~~~tk~ii~~~P~NPTG~v~s~~~~~~l~~la-~~~~~~ii~De~Y~~l~y~g~~~~s~~~~-~~~~~~vI~i~S~SK~  236 (396)
T PRK07568        159 ITDKTKAILISNPGNPTGVVYTKEELRQLADIA-KEHDLFLISDEVYREFTYDGLKYTSAMNI-EGIEDRVIIIDSVSKR  236 (396)
T ss_pred             CCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHH-HHHCEEEECCCCHHHHEECCCCCCCHHCC-CCCCCCEEEECCCCCC
T ss_conf             776574998589929887540157899999999-87106674245355522089877572005-5654422564045566


Q ss_pred             CCCCCCCCCCCCCH-HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEE
Q ss_conf             22344544422110-12268753100122233222222222222346764322222211000000024553047760330
Q gi|254780602|r  241 YAMTGLRIGYAAGA-LSLIKSMIVLQGQQTSGACSIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQGVPGIRYMI  319 (400)
Q Consensus       241 ~~~~G~RiG~~v~~-~~li~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~~~~~L~~~~g~~~~~  319 (400)
                      |++||||+||++++ +++++.+.++.+ ...|++++.|.++..+|+.+++|+.++++.|++||+.+.+.|++++|+.+..
T Consensus       237 ~~~~G~RiG~~v~~~~~~~~~~~~~~~-~~~~~~~~~Q~aa~~~l~~~~~~~~~~~~~y~~rrd~~~~~L~~~~g~~~~~  315 (396)
T PRK07568        237 YSACGARIGSLITKNKELIKQAMKLCQ-ARLCPPTLEQIGAAALLNTPESYFKEVREEYEKRRDILYEGLNKIPGVVCEK  315 (396)
T ss_pred             CCCCHHHEEEEECCCHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECC
T ss_conf             578405435553099999999999712-1478977999999999858779999999999999999999997079978678


Q ss_pred             CCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHH-----CCEEEECCCCCCC-----CCEEEEEEECCHHHHHHHH
Q ss_conf             27408998626410233211332248989999999987-----3979983502289-----9728999629999999999
Q gi|254780602|r  320 PDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEI-----EKVAVVQGSSFGH-----GPSIRISYAVSDAILEEAC  389 (400)
Q Consensus       320 p~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~-----~gV~v~pG~~Fg~-----~~~iRis~~~~~e~l~~al  389 (400)
                      |+||||+|++++            ..++.+|+.+|+++     +||+++||+.|+.     .+||||||+.++|+|++|+
T Consensus       316 P~Ggfyl~~~lp------------~~~~~~f~~~ll~~~~~~~~~V~v~PG~~F~~~~g~g~~~iRls~~~~~e~l~ea~  383 (396)
T PRK07568        316 PTGAFYIIAKLP------------VDDAEDFAKWMLTDFEYNGETVMVAPASGFYATPGLGKDEIRIAYVLEKEDLRRAM  383 (396)
T ss_pred             CCEEEEEEEECC------------CCCHHHHHHHHHHHHHHCCCEEEEECCHHHCCCCCCCCCEEEEEECCCHHHHHHHH
T ss_conf             885789999589------------99999999999996212488699977634168998999969999719999999999


Q ss_pred             HHHHHHHHHCC
Q ss_conf             99999998609
Q gi|254780602|r  390 VRIKRFCHSLQ  400 (400)
Q Consensus       390 ~rl~~~l~~l~  400 (400)
                      +||+++|+++|
T Consensus       384 ~Rl~~~l~~~~  394 (396)
T PRK07568        384 EILKKALEAYN  394 (396)
T ss_pred             HHHHHHHHHHC
T ss_conf             99999999852


No 20 
>PRK09265 aminotransferase AlaT; Validated
Probab=100.00  E-value=0  Score=652.14  Aligned_cols=385  Identities=29%  Similarity=0.457  Sum_probs=341.4

Q ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEECCCCCC---CCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             78898738975899999999999986997266565897---498899999999999838875699877898999999998
Q gi|254780602|r    4 ISNILRRVQPSATLVAAQRVRDLRSKGIDVLCLTAGEP---DFDMPENVKYAVVRAMERGETKYTAVAGISPLREAIVEK   80 (400)
Q Consensus         4 ~s~~~~~l~~s~~~~~~~~~~~~~~~g~~ii~l~~G~p---~~~~p~~i~~a~~~al~~~~~~Y~~~~G~~~lR~aia~~   80 (400)
                      -|+|+++++.+....|.++|++++++|+|||+|++|+|   ||++|++|++++.++++++ ++|+++.|.|+||++||+|
T Consensus         6 ~~~~~~~~~y~~~~~v~~kA~~l~~~G~~vi~l~iG~P~~~df~tP~~i~~a~~~a~~~~-~~Yt~~~G~~eLReaIA~~   84 (404)
T PRK09265          6 KSSKLENVCYDIRGPVLKEAKRLEEEGHKILKLNIGNPAPFGFEAPDEILRDVIRNLPTA-QGYSDSKGLFSARKAIMQY   84 (404)
T ss_pred             HHHCCCCCCEEEEHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHCC-CCCCCCCCCHHHHHHHHHH
T ss_conf             102567750572379999999999769973587797999889999899999999874448-9989888889999999999


Q ss_pred             HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCC
Q ss_conf             64210133332233233454333322222223322322223333232222222222222222222223222103331000
Q gi|254780602|r   81 FRRDNDLHYTSDQIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQA  160 (400)
Q Consensus        81 ~~~~~g~~~~~e~I~it~G~~~~l~~~~~~~~~~Gd~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~  160 (400)
                      |++++|.+++||+|++|+|++++|+++++++++|||+||+++|+|+.|...+.++|+++++++++++++|.+|+++|+++
T Consensus        85 ~~~~~~~~~~p~~I~vT~Ga~~al~~~~~all~pGDeVlvp~P~Yp~Y~~~~~l~g~~~v~~~~~~~~~f~~d~~~l~~~  164 (404)
T PRK09265         85 YQQKGIPDVDVDDIYIGNGVSELIVMAMQALLNNGDEVLVPAPDYPLWTAAVSLSGGKPVHYLCDEEAGWFPDLDDIRSK  164 (404)
T ss_pred             HHHHCCCCCCHHHEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHH
T ss_conf             99756999888997875888999999999964998989994688730689999769889998526323778899999976


Q ss_pred             CCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCC
Q ss_conf             12212201211354210000123333211122333332011101221100000122332221112333225741465443
Q gi|254780602|r  161 ITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKA  240 (400)
Q Consensus       161 i~~~~k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~  240 (400)
                      ++++||+|++||||||||++|+++++++|+++| ++||++||+||+|++++|++.+|.|+.++.++  ..+|+++||||+
T Consensus       165 i~~~tk~iil~nP~NPTG~v~~~~~l~~l~~~a-~~~~i~visDEiY~~l~~d~~~~~s~~~l~~~--~~~I~~~s~SK~  241 (404)
T PRK09265        165 ITPRTKAIVIINPNNPTGAVYSKELLEEIVEIA-RQHNLIIFADEIYDKILYDGAEHISIASLAPD--LLCVTFNGLSKA  241 (404)
T ss_pred             CCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHH-HHCEEEEEECCHHHHHCCCCCCCCCHHHCCCC--CEEEEECCCCCC
T ss_conf             574555999868979512002504688999976-31558998501145523699988787881986--059997367745


Q ss_pred             CCCCCCCCCCCCC--HHHHHHH----HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCHHHHHHCC
Q ss_conf             2234454442211--0122687----53100122233222222222222346764322--22221100000002455304
Q gi|254780602|r  241 YAMTGLRIGYAAG--ALSLIKS----MIVLQGQQTSGACSIAQWAAVEALNGPQDFVV--NNRKIFEYRRDLCVAQLQGV  312 (400)
Q Consensus       241 ~~~~G~RiG~~v~--~~~li~~----l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~--~~~~~~~~~r~~~~~~L~~~  312 (400)
                      |+|||||+||++.  |...+..    +..+ +.+..|++.+.|.++..+|.+.+..-+  ....++.++|+++.+.|+++
T Consensus       242 ~~m~G~RiG~~v~~~p~~~~~~~i~~~~~l-~~~~~c~~~~~Q~a~~~al~~~~~~~~~~~~~~rl~~~Rd~~~~~L~~i  320 (404)
T PRK09265        242 YRVAGFRVGWMVLSGPKKHAKGYIEGLDML-ASMRLCANVPAQHAIQTALGGYQSINELILPGGRLYEQRDRAWELLNAI  320 (404)
T ss_pred             CCCCCCCEEEEEECCCHHHHHHHHHHHHHH-HHCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             567755279999529199999999999988-5401568828999999997383129999999999999999999999738


Q ss_pred             CCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCC--CCEEEEEEECCHHHHHHHHH
Q ss_conf             7760330274089986264102332113322489899999999873979983502289--97289996299999999999
Q gi|254780602|r  313 PGIRYMIPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGH--GPSIRISYAVSDAILEEACV  390 (400)
Q Consensus       313 ~g~~~~~p~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~--~~~iRis~~~~~e~l~~al~  390 (400)
                      +|+++.+|+||||+|+++....       ....+|++|+.+||+++||+++||+.||.  ++||||||+.++++|++|++
T Consensus       321 ~g~~~~~P~Gafy~f~~l~~~~-------~~~~d~~~f~~~Ll~e~gV~v~PG~~Fg~~~~~~vRlsf~~~~e~l~eal~  393 (404)
T PRK09265        321 PGVSCVKPKGALYAFPKLDPKV-------YPIHDDEKFVLDLLLQEKVLLVQGTGFNWPEPDHFRIVTLPRVDDLEDAIG  393 (404)
T ss_pred             CCCEECCCCEEEEEEEECCCCC-------CCCCCHHHHHHHHHHHCCEEEECCCCCCCCCCCEEEEEECCCHHHHHHHHH
T ss_conf             9957568983899830877331-------799999999999998699999778502889999899997999999999999


Q ss_pred             HHHHHHHHCC
Q ss_conf             9999998609
Q gi|254780602|r  391 RIKRFCHSLQ  400 (400)
Q Consensus       391 rl~~~l~~l~  400 (400)
                      ||++||+++|
T Consensus       394 Rl~~~l~~~r  403 (404)
T PRK09265        394 RIGRFLSGYR  403 (404)
T ss_pred             HHHHHHHHHC
T ss_conf             9999999840


No 21 
>PRK07681 aspartate aminotransferase; Provisional
Probab=100.00  E-value=0  Score=650.87  Aligned_cols=380  Identities=23%  Similarity=0.420  Sum_probs=357.6

Q ss_pred             CHH-HHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCC-CCCCCCCCCHHHHHHHH
Q ss_conf             936-7889873897589999999999998699726656589749889999999999983887-56998778989999999
Q gi|254780602|r    1 MVF-ISNILRRVQPSATLVAAQRVRDLRSKGIDVLCLTAGEPDFDMPENVKYAVVRAMERGE-TKYTAVAGISPLREAIV   78 (400)
Q Consensus         1 m~~-~s~~~~~l~~s~~~~~~~~~~~~~~~g~~ii~l~~G~p~~~~p~~i~~a~~~al~~~~-~~Y~~~~G~~~lR~aia   78 (400)
                      |.+ +|+|++++++|+++++.+++++++++|+|||+|++|+|||+||+.+++++.++++++. ++|+ ..|.++||++||
T Consensus         1 m~~~~a~r~~~~~~s~~~el~~~a~~~~~~g~~vI~l~iG~Pd~~~p~~i~~a~~~~~~~~~~~~y~-~~G~~eLReaia   79 (399)
T PRK07681          1 MTYTLATRMKAFQSSIFSELGAYKKEKIAAGHKMIDLSIGNPDMPPADFVREEMVHTANEKESYGYT-LSGIQEFHEAVT   79 (399)
T ss_pred             CCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCC-CCCCHHHHHHHH
T ss_conf             9865777863289899999999999998679983889898899987899999999997187768889-887399999999


Q ss_pred             HHHHHHCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf             98642101333322-33233454333322222223322322223333232222222222222222222223222103331
Q gi|254780602|r   79 EKFRRDNDLHYTSD-QIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNFQVSPEKL  157 (400)
Q Consensus        79 ~~~~~~~g~~~~~e-~I~it~G~~~~l~~~~~~~~~~Gd~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~~~~~~~d~~~l  157 (400)
                      +||++++|++++|| +|++|+|+++||.+++.++++|||+|++++|+|+.|...++..|++++++|++++++|.+|++++
T Consensus        80 ~~~~~~~g~~~~pd~~I~vt~G~~~al~~~~~al~~pGD~Vli~~P~Y~~y~~~~~~~g~~~v~vpl~~e~~~~~d~~~l  159 (399)
T PRK07681         80 EYYNNTHNVILNADKEVLLLMGSQDGLVHLPMVYANPGDIILVPDPGYTAYETGIQMAGATSYYMPLKKENDFLPDLELI  159 (399)
T ss_pred             HHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHCCCEEEEEECCCCCCCHHHHHHH
T ss_conf             99999868998988849986888999999999967999989975687442799998769989995057666743689999


Q ss_pred             HCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCC
Q ss_conf             00012212201211354210000123333211122333332011101221100000122332221112333225741465
Q gi|254780602|r  158 EQAITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGV  237 (400)
Q Consensus       158 ~~~i~~~~k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~  237 (400)
                      ++.+++++|++++||||||||.+++++++++|+++| ++||++||+||+|++++|++.++.|+.++ ++..+++|+++||
T Consensus       160 ~~~i~~~tk~iil~~P~NPTG~v~s~e~l~~l~~la-~~~~i~iIsDEiY~~l~~~~~~~~s~~~~-~~~~~~~I~i~S~  237 (399)
T PRK07681        160 PEEIADKAKMMILNFPGNPVPAMAHEDFFKEVIAFA-KKHNIIVVHDFAYAEFYFDGNKPISFLSV-PGAKEVGVEINSL  237 (399)
T ss_pred             HHHCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHH-HHCCCEEECCCCCCCEEECCCCCCCHHHC-CCCCCCCCEECCC
T ss_conf             985322555999769989888778999999999985-31363343125511103179887576443-3541345253221


Q ss_pred             CCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEE
Q ss_conf             44322344544422110122687531001222332222222222223467643222222110000000245530477603
Q gi|254780602|r  238 SKAYAMTGLRIGYAAGALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQGVPGIRY  317 (400)
Q Consensus       238 SK~~~~~G~RiG~~v~~~~li~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~~~~~L~~~~g~~~  317 (400)
                      ||+|++||||+||+++++++++++..+++...++++.+.|.+++.+|++.++|+++.+..|++||+.+.+.|++. |+++
T Consensus       238 SK~~~~~G~RiG~~i~~~~~i~~~~~~~~~~~~~~~~~~q~aa~~al~~~~~~~~~~r~~~~~rr~~l~~~L~~~-g~~~  316 (399)
T PRK07681        238 SKSYSLAGSRIGYMIGNEEIVRALTQFKSNTDYGVFLPIQKAACAALRNGAAFCEKNREIYQERRDTLVDGFRTF-GWNV  316 (399)
T ss_pred             CCCCCCCCCCEEEEEECHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHC-CCEE
T ss_conf             345556532169997099999999999986656745399999999996874789999999999999999999875-9863


Q ss_pred             EECCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCC--CCEEEEEEECCHHHHHHHHHHHHHH
Q ss_conf             30274089986264102332113322489899999999873979983502289--9728999629999999999999999
Q gi|254780602|r  318 MIPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGH--GPSIRISYAVSDAILEEACVRIKRF  395 (400)
Q Consensus       318 ~~p~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~--~~~iRis~~~~~e~l~~al~rl~~~  395 (400)
                      ..|+||||+|+++++           ..++.+|+.+|++++||+++||+.||.  ++|||++|+.++++|++|++||+++
T Consensus       317 ~~P~Gg~y~w~~l~~-----------~~d~~~f~~~Ll~~~gV~v~PG~~Fg~~g~g~iRl~f~~~~e~l~eal~RLk~a  385 (399)
T PRK07681        317 DKPAGSMFVWAEIPD-----------GWTSLDFAYALMDRANVVVTPGHAFGPHGEGFVRIALVQDKEVLQQVVENIRNS  385 (399)
T ss_pred             CCCCCEEEEEEECCC-----------CCCHHHHHHHHHHHCCEEEECCHHHCCCCCCEEEEEEECCHHHHHHHHHHHHHC
T ss_conf             378800289688999-----------999799999999829999988646589998869999718899999999999888


No 22 
>PRK08363 alanine aminotransferase; Validated
Probab=100.00  E-value=0  Score=650.58  Aligned_cols=384  Identities=32%  Similarity=0.518  Sum_probs=352.3

Q ss_pred             CHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEECCCCCC---CCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH
Q ss_conf             93678898738975899999999999986997266565897---498899999999999838875699877898999999
Q gi|254780602|r    1 MVFISNILRRVQPSATLVAAQRVRDLRSKGIDVLCLTAGEP---DFDMPENVKYAVVRAMERGETKYTAVAGISPLREAI   77 (400)
Q Consensus         1 m~~~s~~~~~l~~s~~~~~~~~~~~~~~~g~~ii~l~~G~p---~~~~p~~i~~a~~~al~~~~~~Y~~~~G~~~lR~ai   77 (400)
                      ||.+|+|...+ ++.++.|..+|++++++|++||+|++|+|   ||+||+.|++++.++++++.++|+++.|.|+||++|
T Consensus         1 ~~~~~~~~~~~-~~~i~~i~~~a~~l~~~G~~vi~l~iG~P~~~df~~p~~i~~a~~~a~~~~~~~Y~~~~G~~~LR~ai   79 (398)
T PRK08363          1 MIRASKRALGV-EYAIRDVVLPARELEKKGIKVIRLNIGDPVKFDFQPPEHMKEAYCRAIKEGHNYYGPSEGLPELREAI   79 (398)
T ss_pred             CCCCCCCCCCC-CEEHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
T ss_conf             98711021468-85066799999999977997068569899978999899999999999971899889988759999999


Q ss_pred             HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf             99864210133332233233454333322222223322322223333232222222222222222222223222103331
Q gi|254780602|r   78 VEKFRRDNDLHYTSDQIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNFQVSPEKL  157 (400)
Q Consensus        78 a~~~~~~~g~~~~~e~I~it~G~~~~l~~~~~~~~~~Gd~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~~~~~~~d~~~l  157 (400)
                      |+||++++|++++||||++|+|+++||.+++.++++|||+|++++|+|+.|...++.+|++++.+++.++++|.+|+|+|
T Consensus        80 a~~~~~~~g~~~~pd~I~vt~G~~~al~~~~~~l~~pGD~Vlvp~P~Y~~y~~~~~~~g~~~v~~~~~~~~~~~~d~~~l  159 (398)
T PRK08363         80 VKREKRKNGVDITPDDVRVTNAVTEALQMLFGALLDPGDEILIPGPSYPPYTGLVKFYGGVPVEYRTIEEEGWQPDIDDI  159 (398)
T ss_pred             HHHHHHHHCCCCCHHHEEECCCHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHCCCEEECCCCCCCCCCCCCHHHH
T ss_conf             99999986899866888985778999999999966998989986675674389999839978436886214896899999


Q ss_pred             HCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCC
Q ss_conf             00012212201211354210000123333211122333332011101221100000122332221112333225741465
Q gi|254780602|r  158 EQAITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGV  237 (400)
Q Consensus       158 ~~~i~~~~k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~  237 (400)
                      ++.+++++|++++||||||||.+|+++++++|+++| +++|++||+||+|++++|++ ++.++.++..  .+++|+++||
T Consensus       160 ~~~i~~~tk~i~l~nP~NPTG~v~s~~~l~~i~~la-~~~~~~vIsDEiY~~l~~~~-~~~s~~~~~~--~~~vi~i~s~  235 (398)
T PRK08363        160 RKKITEKTKAIAVINPNNPTGALYDKKTLKEILDIA-GEHDLPVISDEIYDLMTYEG-KHVSPGSLTK--DVPVIVMNGL  235 (398)
T ss_pred             HHHCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHH-HHCCCEEECHHHHHHHCCCC-CCCCHHHHCC--CCCEEEEECC
T ss_conf             975311372999879999888865488999999998-75596476133466641699-8779778286--7788998255


Q ss_pred             CCCCCCCCCCCCCCC--CHHHHHHHHHHHC---CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCC
Q ss_conf             443223445444221--1012268753100---12223322222222222234676432222221100000002455304
Q gi|254780602|r  238 SKAYAMTGLRIGYAA--GALSLIKSMIVLQ---GQQTSGACSIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQGV  312 (400)
Q Consensus       238 SK~~~~~G~RiG~~v--~~~~li~~l~~~~---~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~~~~~L~~~  312 (400)
                      ||+|++||||+||++  +|+..+..+....   .....|++++.|.+++.+++.+++|+++.++.|++||+.+.+.|+++
T Consensus       236 SK~~~~~G~RiG~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~Q~a~~~al~~~~~~~~~~~~~~~~rrd~~~~~L~~~  315 (398)
T PRK08363        236 SKVYFATGWRLGYIYFVDPEGKLDEVREALDKLARIRLCPNTPAQFAAIAGLTGPMDYLEEYMKKLKERRDYIYKRLNEI  315 (398)
T ss_pred             CCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             03047856136999975838999999999999855064777399999999986687789999999999999999999717


Q ss_pred             CCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCC--CCEEEEEEECCHHHHHHHHH
Q ss_conf             7760330274089986264102332113322489899999999873979983502289--97289996299999999999
Q gi|254780602|r  313 PGIRYMIPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGH--GPSIRISYAVSDAILEEACV  390 (400)
Q Consensus       313 ~g~~~~~p~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~--~~~iRis~~~~~e~l~~al~  390 (400)
                      +|+++..|+||||+|++++..         ...++.+|+.+|++++||+++||+.||.  ++|||+||+.++++|++|++
T Consensus       316 ~g~~~~~P~G~~y~~~~l~~~---------~~~~~~ef~~~ll~e~gV~v~PG~~Fg~~g~g~vRlsf~~~~e~l~eal~  386 (398)
T PRK08363        316 PGISTTKPQGAFYIFPRIEEG---------PWKDDKEFVLDLLHEAHVLFVHGSGFGEYGAGHFRLVFLPPVEILEEAMD  386 (398)
T ss_pred             CCCEECCCCEEEEEEEECCCC---------CCCCHHHHHHHHHHHCCEEEECCHHHCCCCCCEEEEEEECCHHHHHHHHH
T ss_conf             995755888788983787888---------99999999999998599999896432889998699998389999999999


Q ss_pred             HHHHHHHH
Q ss_conf             99999986
Q gi|254780602|r  391 RIKRFCHS  398 (400)
Q Consensus       391 rl~~~l~~  398 (400)
                      ||++|+++
T Consensus       387 Rl~~~l~~  394 (398)
T PRK08363        387 RFEEFMRE  394 (398)
T ss_pred             HHHHHHHH
T ss_conf             99999999


No 23 
>PRK06290 aspartate aminotransferase; Provisional
Probab=100.00  E-value=0  Score=648.21  Aligned_cols=386  Identities=22%  Similarity=0.313  Sum_probs=350.5

Q ss_pred             HHHHH------HHCCCCHHHHHHHHHHHHHHC--CCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHH
Q ss_conf             78898------738975899999999999986--9972665658974988999999999998388756998778989999
Q gi|254780602|r    4 ISNIL------RRVQPSATLVAAQRVRDLRSK--GIDVLCLTAGEPDFDMPENVKYAVVRAMERGETKYTAVAGISPLRE   75 (400)
Q Consensus         4 ~s~~~------~~l~~s~~~~~~~~~~~~~~~--g~~ii~l~~G~p~~~~p~~i~~a~~~al~~~~~~Y~~~~G~~~lR~   75 (400)
                      +++++      +...+|.+..+.+..++++.+  |.|||+|++|+|||+||++|++|+.++++++.++|++..|+|+||+
T Consensus         9 ~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~DVI~L~iGePDf~tP~~i~~a~~~a~~~~~~~y~~~~G~~eLRe   88 (411)
T PRK06290          9 FAERIGGKSFGKETVIYKFEKIKRAKQAAKKKYPDMELIDMGVGEPDEMADESVVEVLCEEAKKPENRGYADNGIQELKE   88 (411)
T ss_pred             HHHHHCCCCCCCCCCCEEHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHH
T ss_conf             99984466778555521089999999999986879987778998999987999999999998379988889876499999


Q ss_pred             HHHHHHHHHCCC-CCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf             999986421013-33322-3323345433332222222332232222333323222222222222222222222322210
Q gi|254780602|r   76 AIVEKFRRDNDL-HYTSD-QIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNFQVS  153 (400)
Q Consensus        76 aia~~~~~~~g~-~~~~e-~I~it~G~~~~l~~~~~~~~~~Gd~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~~~~~~~d  153 (400)
                      +||+||++++|+ +++|+ +|++|+|+++||+++++++++|||+||+++|+|+.|...++++|++++++|+.++++|.+|
T Consensus        89 aIa~~~~~~~gv~~~dp~~eIivt~Ga~~al~~~~~all~pGDeVli~~P~yp~Y~~~~~~~G~~~v~vp~~~e~~~~~d  168 (411)
T PRK06290         89 AAARYMEKVYGVKDLDPVTEVIHSIGSKPALAYLPSCFINPGDVTLMTVPGYPVTATHTKWYGGEVYNLPLLEENNFLPD  168 (411)
T ss_pred             HHHHHHHHHCCCCCCCCCCEEEECCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCC
T ss_conf             99999999719987897767998988899999999996699998998688736589999984998999865666787659


Q ss_pred             HHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf             33310001221220121135421000012333321112233333201110122110000012233222111233322574
Q gi|254780602|r  154 PEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLV  233 (400)
Q Consensus       154 ~~~l~~~i~~~~k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~  233 (400)
                      ++++++.++++||+|++||||||||.+++++++++|+++| ++++++||+||+|++++|++. +.|+.++ ++..+++|+
T Consensus       169 ~~~l~~~i~~ktK~iilnsP~NPTG~v~s~e~l~~i~~~a-~~~~i~vIsDEiY~~l~yd~~-~~s~~s~-~~~~~~~I~  245 (411)
T PRK06290        169 LDAIPKDVLEKAKLLYLNYPNNPTGAVATKEFYKEVVDFA-FENDIIVVQDAAYAALTFDGK-PLSFLSV-PGAKEVGVE  245 (411)
T ss_pred             HHHHHHHCCCCCEEEEECCCCCCCCEEECHHHHHHHHHHH-HHCCCEEECHHHHHHHEECCC-CCCCCCC-CCCCCEEEE
T ss_conf             5771986255765999889999986142489999999998-642877642353555100897-7761025-677441799


Q ss_pred             ECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCC
Q ss_conf             14654432234454442211012268753100122233222222222222346764322222211000000024553047
Q gi|254780602|r  234 VNGVSKAYAMTGLRIGYAAGALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQGVP  313 (400)
Q Consensus       234 ~~S~SK~~~~~G~RiG~~v~~~~li~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~~~~~L~~~~  313 (400)
                      ++||||+|+|||||+||+++++++++.+.+++++..+|++.+.|.+++.+|++ .++.+++++.|++||+++.+.|+++ 
T Consensus       246 i~S~SK~~~mtGwRiG~~i~~~~li~~~~~i~~~~~~~~~~~~Q~aa~~aL~~-~~~~~~~~~~y~~rrd~l~~~L~~~-  323 (411)
T PRK06290        246 IHSFSKAYNMTGWRLAFVAGNELIVKAFAAVKDNTDSGQFIAIQKAGIYCLRH-PEITEKTRAKYERRLDKMVKILKEV-  323 (411)
T ss_pred             ECCCCCCCCCCEEEEEEEECCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_conf             82577467872245898866999999999999746476149999999999559-8999999999999999999999977-


Q ss_pred             CCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCCCCEEEEEEECCHHHHHHHHHHHH
Q ss_conf             76033027408998626410233211332248989999999987397998350228997289996299999999999999
Q gi|254780602|r  314 GIRYMIPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGHGPSIRISYAVSDAILEEACVRIK  393 (400)
Q Consensus       314 g~~~~~p~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~iRis~~~~~e~l~~al~rl~  393 (400)
                      |+++..|+||||+|+++++...    .+....++.+|+.+||+++||+++||.+||  +||||||+.+.++|++|++||+
T Consensus       324 G~~~~~P~GafY~~~~ip~~~~----~~~~~~~~~efa~~LLee~~VavvPG~~fG--~yvRis~~~~~e~leea~~rl~  397 (411)
T PRK06290        324 GFNAKMPGGTFYLYVKAPKGTK----SGIKFANAEEFSQYLIKEKLISTVPWDDAG--HFLRMSVTFEAKSIEEEDRILN  397 (411)
T ss_pred             CCEECCCCEEEEEEEECCCCCC----CCCCCCCHHHHHHHHHHHCCEEEECCCCCC--CEEEEEEECCHHHHHHHHHHHH
T ss_conf             9850688753699687877665----777668999999999984899995655153--5599998388999999999999


Q ss_pred             HHHHHCC
Q ss_conf             9998609
Q gi|254780602|r  394 RFCHSLQ  400 (400)
Q Consensus       394 ~~l~~l~  400 (400)
                      ++.+.|.
T Consensus       398 ~~~~~l~  404 (411)
T PRK06290        398 EVKRRLS  404 (411)
T ss_pred             HHHHHHH
T ss_conf             9999872


No 24 
>PRK08175 aminotransferase; Validated
Probab=100.00  E-value=0  Score=647.17  Aligned_cols=383  Identities=24%  Similarity=0.384  Sum_probs=357.9

Q ss_pred             HHHHHCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCC-CCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             89873897589999999999998699726656589749889999999999983887-56998778989999999986421
Q gi|254780602|r    6 NILRRVQPSATLVAAQRVRDLRSKGIDVLCLTAGEPDFDMPENVKYAVVRAMERGE-TKYTAVAGISPLREAIVEKFRRD   84 (400)
Q Consensus         6 ~~~~~l~~s~~~~~~~~~~~~~~~g~~ii~l~~G~p~~~~p~~i~~a~~~al~~~~-~~Y~~~~G~~~lR~aia~~~~~~   84 (400)
                      +|+++|+||++..+.+++++++++|+|||+||+|+|||++|+.|++|+.++++++. ++|++++|.++||++||+||+++
T Consensus         4 ~r~~~l~~~~~~~~~~~~~~~~~~G~dvi~l~iG~pdf~~p~~i~~a~~~~~~~~~~~~Y~~~~G~~~LReaia~~~~~~   83 (395)
T PRK08175          4 TRIDRLPPYVFNITAELKMAARRRGEDIIDFSMGNPDGATPPHIVEKLCEVAQRPDTHGYSTSRGIPRLRRAISRWYQDR   83 (395)
T ss_pred             CHHHCCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf             65530999789999999999985799818776978999879999999999976999888899757499999999999998


Q ss_pred             CCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCC
Q ss_conf             01333322-33233454333322222223322322223333232222222222222222222223222103331000122
Q gi|254780602|r   85 NDLHYTSD-QIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQAITP  163 (400)
Q Consensus        85 ~g~~~~~e-~I~it~G~~~~l~~~~~~~~~~Gd~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~  163 (400)
                      +|++++|| +|++|+|+++||.++++++++|||+|++++|+|+.|...+...|++++.+|+.++++|..|++++.+...+
T Consensus        84 ~g~~~~p~~~iivt~Ga~~al~~~~~al~~pGD~Vli~~P~Yp~y~~~~~~~g~~~~~vpl~~~~~~~~~le~~~~~~~~  163 (395)
T PRK08175         84 YDVDIDPESEAIVTIGSKEGLAHLMLATLDHGDTVLVPNPSYPIHIYGAVIAGAQVRSVPLVEGVDFFNELERAIRESYP  163 (395)
T ss_pred             HCCCCCCCCEEEECCCHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHCCC
T ss_conf             68987878839988887999999999727998989977877401499999847840785045777604419999972687


Q ss_pred             CCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCC
Q ss_conf             12201211354210000123333211122333332011101221100000122332221112333225741465443223
Q gi|254780602|r  164 KTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAM  243 (400)
Q Consensus       164 ~~k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~~  243 (400)
                      ++|++++||||||||.+|+++++++|+++| ++||++||+||+|++++|++.+++++.++ ++..+++|+++||||+|++
T Consensus       164 ktk~iiln~P~NPTG~v~s~e~l~~i~~~a-~~~~i~visDEiY~~l~~d~~~~~s~~~~-~~~~~~~i~~~S~SK~f~~  241 (395)
T PRK08175        164 KPKMMILGFPSNPTAQCVELEFFEKVVALA-KRYDVLVVHDLAYADIVYDGWKAPSIMQV-PGAKDVAVEFFTLSKSYNM  241 (395)
T ss_pred             CCEEEEECCCCCCCCCCCCHHHHHHHHHHH-HHCCEEEEECCCHHHHCCCCCCCCCHHHC-CCCCCCEEEEEECCCCCCC
T ss_conf             745999889999888757999999999988-86694898235314210288778685447-4564654899503223477


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEECCCC
Q ss_conf             44544422110122687531001222332222222222223467643222222110000000245530477603302740
Q gi|254780602|r  244 TGLRIGYAAGALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQGVPGIRYMIPDGA  323 (400)
Q Consensus       244 ~G~RiG~~v~~~~li~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~~~~~L~~~~g~~~~~p~g~  323 (400)
                      ||||+||+++++++++.+.+++++...+++++.|.+++.+|+.+++|+.++++.|++||+.+.+.|+++ |+++..|+||
T Consensus       242 ~G~RiG~ii~~~~~i~~~~~~~~~~~~~~~~~~Q~aa~~al~~~~~~~~~~~~~~~~rr~~l~~~L~~~-g~~~~~P~G~  320 (395)
T PRK08175        242 AGWRIGFMVGNPELVSALARIKSYHDYGTFTPLQVAAIAALEGDQQCVRDIAEQYKRRRDVLVKGLHEA-GWMVEMPKAS  320 (395)
T ss_pred             CCCCEEEEECCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHC-CCEEECCCEE
T ss_conf             754569996499999999999987046876799999999985989999999999999999999999875-9854068966


Q ss_pred             EEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCC--CCEEEEEEECCHHHHHHHHHHHHHHHHHC
Q ss_conf             89986264102332113322489899999999873979983502289--97289996299999999999999999860
Q gi|254780602|r  324 FYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGH--GPSIRISYAVSDAILEEACVRIKRFCHSL  399 (400)
Q Consensus       324 ~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~--~~~iRis~~~~~e~l~~al~rl~~~l~~l  399 (400)
                      ||+|+++++..        ...++.+|+.+|++++||+++||+.||.  ++|||++|+.++++|+||++||++++++-
T Consensus       321 ~y~w~~~~~~~--------~~~~~~ef~~~ll~e~~V~v~PG~~Fg~~g~~~vRl~~~~~~~~l~eal~Ri~~~~~a~  390 (395)
T PRK08175        321 MYVWAKIPEPY--------AAMGSLEFAKKLLNEAKVCVSPGIGFGDYGDTHVRFALIENRDRIRQAVRGIKAMFRAD  390 (395)
T ss_pred             EEEEEECCCCC--------CCCCHHHHHHHHHHHCCEEEECCHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHC
T ss_conf             69968888876--------78998999999998498999777332779998699997289999999999999999867


No 25 
>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.
Probab=100.00  E-value=0  Score=644.44  Aligned_cols=378  Identities=30%  Similarity=0.500  Sum_probs=356.4

Q ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCC-CCCCCCCCCHHHHHHHHHHH
Q ss_conf             67889873897589999999999998699726656589749889999999999983887-56998778989999999986
Q gi|254780602|r    3 FISNILRRVQPSATLVAAQRVRDLRSKGIDVLCLTAGEPDFDMPENVKYAVVRAMERGE-TKYTAVAGISPLREAIVEKF   81 (400)
Q Consensus         3 ~~s~~~~~l~~s~~~~~~~~~~~~~~~g~~ii~l~~G~p~~~~p~~i~~a~~~al~~~~-~~Y~~~~G~~~lR~aia~~~   81 (400)
                      .+|+|+++++||.+.++.+++++++++|+|||+||+|+|||++|+.|++|++++++++. ++|+++.|.++||++||+||
T Consensus         1 ~~~~r~~~~~~~~~~~i~~~a~~~~~~G~dvi~l~ig~pdf~~p~~i~~a~~~a~~~~~~~~Y~~~~G~~~lreaia~~~   80 (383)
T TIGR03540         1 KLADRIENLPPYLFAEIDKKKAEKKAEGVDVISLGIGDPDLPTPKHIVEALCKAAENPENHRYPSYEGMLAYRQAVADWY   80 (383)
T ss_pred             CHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf             95458540899899999999999985699858888998999989999999999982888765499878499999999999


Q ss_pred             HHHCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCC
Q ss_conf             421013333223-3233454333322222223322322223333232222222222222222222223222103331000
Q gi|254780602|r   82 RRDNDLHYTSDQ-IIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQA  160 (400)
Q Consensus        82 ~~~~g~~~~~e~-I~it~G~~~~l~~~~~~~~~~Gd~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~  160 (400)
                      ++++|++++||+ |++|+|+++|+..+++++++|||+|++++|+|+.|...++.+|++++.+|+.++++|.+|+|++++.
T Consensus        81 ~~~~g~~~~p~~~vi~t~Ga~~al~~~~~~l~~pGD~Vli~~P~Y~~y~~~~~~~g~~~v~vpl~~~~~~~~d~e~l~~~  160 (383)
T TIGR03540        81 KRRFGVELDPETEVLSLIGSKEGIAHIPLAFVNPGDIVLVPDPGYPVYRIGTLFAGGEPYEMPLKEENGFLPDFDAIPED  160 (383)
T ss_pred             HHHHCCCCCCCCEEEECCCCHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHH
T ss_conf             99868989967669984782599999999966898989987898601699999719858996133577985799999874


Q ss_pred             CCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCC
Q ss_conf             12212201211354210000123333211122333332011101221100000122332221112333225741465443
Q gi|254780602|r  161 ITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKA  240 (400)
Q Consensus       161 i~~~~k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~  240 (400)
                      +++++|++++||||||||.+|+++++++|+++| +++|++||+||+|++++|++.+++++.++ ++..+++|+++||||+
T Consensus       161 ~~~~~k~iil~~P~NPTG~v~s~~~l~~i~~la-~~~~i~iIsDEiY~~l~~~~~~~~s~~~~-~~~~~~~i~~~S~SK~  238 (383)
T TIGR03540       161 IAKKAKLMFINYPNNPTGAVAPLKFFKELVEFA-KEYNIIVCHDNAYSEITFDGYKAPSFLEV-DGAKDVGIEFHSLSKT  238 (383)
T ss_pred             CCCCCEEEEECCCCCCCCCCCCCHHHHCCCCCC-CCCCCEEECCHHHHHHCCCCCCCCCCEEC-CCCCCEEEEEEECCCC
T ss_conf             523774999899989707012102222010012-45540576110255530389999771113-6655425776302354


Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEC
Q ss_conf             22344544422110122687531001222332222222222223467643222222110000000245530477603302
Q gi|254780602|r  241 YAMTGLRIGYAAGALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQGVPGIRYMIP  320 (400)
Q Consensus       241 ~~~~G~RiG~~v~~~~li~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~~~~~L~~~~g~~~~~p  320 (400)
                      |++||||+||+++++++++.+.+++++..++++.+.|.+++.+++..++|++++++.|++||+.+.+.|+++ |+++..|
T Consensus       239 ~~~~G~RiG~~i~~~~l~~~~~~~~~~~~~~~~~~~q~a~~~al~~~~~~~~~~~~~~~~~r~~~~~~L~~~-g~~~~~p  317 (383)
T TIGR03540       239 YNMTGWRIGMAVGNADLIAGLGKVKTNVDSGVFQAIQYAAIAALNGPQDVVKEIRKIYQRRRDLLLEALKKI-GIDVEKP  317 (383)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHC-CCEEECC
T ss_conf             478873489622899999999999755135676599999999985919999999999999999999999876-9877357


Q ss_pred             CCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCC--CCEEEEEEECCHHHHHHHHHHHHH
Q ss_conf             74089986264102332113322489899999999873979983502289--972899962999999999999999
Q gi|254780602|r  321 DGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGH--GPSIRISYAVSDAILEEACVRIKR  394 (400)
Q Consensus       321 ~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~--~~~iRis~~~~~e~l~~al~rl~~  394 (400)
                      +||||+|+++++           ..++.+|+.+|++++||+++||+.||.  ++|+||+|+.++++|++|++||++
T Consensus       318 ~g~~~~w~~~~~-----------~~~~~~~~~~ll~~~gV~v~PG~~Fg~~g~~~iRl~~~~~~e~l~eal~RL~k  382 (383)
T TIGR03540       318 KATFYVWVPVPE-----------GYTSAEFAARLLEETGVVVTPGVGFGEYGEGYIRISLTVPDERLEEAVARIKK  382 (383)
T ss_pred             CCEEEEEEECCC-----------CCCHHHHHHHHHHHCCEEEECCHHHCCCCCCEEEEEEECCHHHHHHHHHHHHC
T ss_conf             805799898999-----------98989999999983999998885328899886999986999999999999844


No 26 
>PRK07337 aminotransferase; Validated
Probab=100.00  E-value=0  Score=645.55  Aligned_cols=382  Identities=31%  Similarity=0.520  Sum_probs=353.1

Q ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             36788987389758999999999999869972665658974988999999999998388756998778989999999986
Q gi|254780602|r    2 VFISNILRRVQPSATLVAAQRVRDLRSKGIDVLCLTAGEPDFDMPENVKYAVVRAMERGETKYTAVAGISPLREAIVEKF   81 (400)
Q Consensus         2 ~~~s~~~~~l~~s~~~~~~~~~~~~~~~g~~ii~l~~G~p~~~~p~~i~~a~~~al~~~~~~Y~~~~G~~~lR~aia~~~   81 (400)
                      |.+|+|+.+++||.++++.+++++++++|+|||+||+|+|||++|+.|++++.++++++.++|+++.|.++||++|++||
T Consensus         1 m~~a~r~~~~~~s~~~~i~~~a~~~~~~G~dvi~l~~g~pdf~~p~~i~~a~~~~~~~~~~~Y~~~~G~~~lreaia~~~   80 (388)
T PRK07337          1 MRLASRVDAIEPFYVMELAKEAQALERAGRDIIHMGIGEPDFTAPEPVVEAAARALRRGVTQYTSALGLAPLREAIAAHY   80 (388)
T ss_pred             CCHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf             94514857099429999999999999779980899799899987999999999998469998899988799999999999


Q ss_pred             HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCC
Q ss_conf             42101333322332334543333222222233223222233332322222222222222222222232221033310001
Q gi|254780602|r   82 RRDNDLHYTSDQIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQAI  161 (400)
Q Consensus        82 ~~~~g~~~~~e~I~it~G~~~~l~~~~~~~~~~Gd~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i  161 (400)
                      ++++|++++||+|++|+|++++|.++++++++|||+|++++|+|+.|...+...|++++.+|+.++++|.+|++++++++
T Consensus        81 ~~~~g~~i~pe~I~it~G~~~al~~~~~~l~~pGD~Vlv~~P~Yp~~~~~~~~~g~~~~~vp~~~~~~~~~d~~~l~~~~  160 (388)
T PRK07337         81 ARRFGLDVAPERIVVTAGASAALLLACLALVERGDEVLMPDPSYPCNRHFVAAAEGRPVLVPSGPAERFQLTADDVRTHW  160 (388)
T ss_pred             HHHHCCCCCHHHEEECCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHC
T ss_conf             99868999668879848759999999999669999899858873659999997398899940371006778979999857


Q ss_pred             CCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCC
Q ss_conf             22122012113542100001233332111223333320111012211000001223322211123332257414654432
Q gi|254780602|r  162 TPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAY  241 (400)
Q Consensus       162 ~~~~k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~  241 (400)
                      ++++|++++||||||||.+|+++++++|+++| ++|+++||+||+|+++.|++.+++++ +.    .+++|+++||||+|
T Consensus       161 ~~~tk~iil~nP~NPtG~v~s~~el~~i~~~a-~~~~~~vIsDEiY~~l~~~~~~~~~~-~~----~~~~i~~~S~SK~~  234 (388)
T PRK07337        161 GERTRGVLLASPSNPTGTSIEPDELRRIVEAV-RARGGFTIVDEIYQGLSYDAAPVSAL-SL----GDDVITINSFSKYF  234 (388)
T ss_pred             CCCCEEEEECCCCCCCCEEEEHHHHHHHHHHH-HCCCEEEECCCCCCCCCCCCCCCCCC-CC----CCCEEEECCCCCCC
T ss_conf             86553999789979888562677743355443-14580884576410012489986710-05----78579982665455


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCHHHHHHCCCCCEE-EE
Q ss_conf             2344544422110122687531001222332222222222223467-643222222110000000245530477603-30
Q gi|254780602|r  242 AMTGLRIGYAAGALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGP-QDFVVNNRKIFEYRRDLCVAQLQGVPGIRY-MI  319 (400)
Q Consensus       242 ~~~G~RiG~~v~~~~li~~l~~~~~~~~~~~~~~~q~a~~~~l~~~-~~~~~~~~~~~~~~r~~~~~~L~~~~g~~~-~~  319 (400)
                      ++||||+||+++|+++++.+.++++....|++.+.|.++.++++.. ..++++.++.|++||+++.+.|+++ |+.+ ..
T Consensus       235 ~~~G~RiG~~i~p~~li~~~~~~~~~~~~~~~~~~q~aa~~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~-~~~~~~~  313 (388)
T PRK07337        235 NMTGWRLGWLVVPPALVGTFEKLAQNLFICASALAQHAALACFEPDTLAIYERRRAEFKRRRDFIVPALESL-GFKVPVM  313 (388)
T ss_pred             CCCCCCEEEEEECHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCCCC
T ss_conf             786615699998899999999999854588669999999998482247999999999999999999999975-9964657


Q ss_pred             CCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCC---CCEEEEEEECCHHHHHHHHHHHHHHH
Q ss_conf             274089986264102332113322489899999999873979983502289---97289996299999999999999999
Q gi|254780602|r  320 PDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGH---GPSIRISYAVSDAILEEACVRIKRFC  396 (400)
Q Consensus       320 p~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~---~~~iRis~~~~~e~l~~al~rl~~~l  396 (400)
                      |+||||+|+|++....      ....++.+|+.+|++++||+++||+.||.   ++|+|++|++++++|++|++||+++|
T Consensus       314 P~G~~~~w~d~~~~~~------~~~~d~~~~~~~ll~e~gV~v~PG~~Fg~~~~~~~iRl~~a~~~~~l~eal~RL~~~l  387 (388)
T PRK07337        314 PDGAFYVYADCGGVAH------PAAGDSAALTFAMLHDAGVVLVPGMDFGPHAPRDYIRLSYATSYSRLEEAVARLGKLF  387 (388)
T ss_pred             CCEEEEEEEECHHHCC------CCCCCHHHHHHHHHHHCCEEEECCHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHHHH
T ss_conf             8826699478642169------9999999999999985999997762218999999799997199999999999999970


No 27 
>PRK06375 consensus
Probab=100.00  E-value=0  Score=645.85  Aligned_cols=379  Identities=39%  Similarity=0.665  Sum_probs=352.1

Q ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             67889873897589999999999998699726656589749889999999999983887569987789899999999864
Q gi|254780602|r    3 FISNILRRVQPSATLVAAQRVRDLRSKGIDVLCLTAGEPDFDMPENVKYAVVRAMERGETKYTAVAGISPLREAIVEKFR   82 (400)
Q Consensus         3 ~~s~~~~~l~~s~~~~~~~~~~~~~~~g~~ii~l~~G~p~~~~p~~i~~a~~~al~~~~~~Y~~~~G~~~lR~aia~~~~   82 (400)
                      |+|+|+..++||+++.+.+++++++++|+|||+||+|+|||++|+.|++++.++++++.++|++++|.++||++||+||+
T Consensus         1 ~~~~r~~~~~~~~~~~~~~~a~~l~~~G~dvi~l~iG~pdf~~P~~i~~a~~~~~~~~~~~Y~~~~G~~~lR~aia~~~~   80 (381)
T PRK06375          1 MLSSRLQYINESATVSASNRVEKLRKQGKKLYNFGIGEPDFTTPDNIIKYAFEMAKSGKTHYTPSAGIPELREKIALKLK   80 (381)
T ss_pred             CHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf             94688621893899999999999997799707738999999868999999999973799888999986999999999999


Q ss_pred             HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCC
Q ss_conf             21013333223323345433332222222332232222333323222222222222222222222322210333100012
Q gi|254780602|r   83 RDNDLHYTSDQIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQAIT  162 (400)
Q Consensus        83 ~~~g~~~~~e~I~it~G~~~~l~~~~~~~~~~Gd~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~  162 (400)
                      +++|+++++|+|++|+ +++++.++++++++|||+|++++|+|+.|...++..|+++++++++  ++|.+|+|+++++++
T Consensus        81 ~~~g~~~~~~~i~vt~-~~~~l~~~~~~l~~pGD~Vii~~P~Y~~y~~~~~~~g~~~v~~~~~--~~~~~d~~~l~~~i~  157 (381)
T PRK06375         81 SRNNIDAVAKNVLVTP-TKFGINLAMMVILNPGDEVLIPSPYYVSYPDIVKLAGGKPVFVDTD--DDYNIDIDNMRKAVT  157 (381)
T ss_pred             HHCCCCCCCCEEEEEC-HHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHCCEEEEEECC--CCCCCCHHHHHHHCC
T ss_conf             8559999957699854-8999999999866999989981888761999999819977642038--877979999996378


Q ss_pred             CCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCC
Q ss_conf             21220121135421000012333321112233333201110122110000012233222111233322574146544322
Q gi|254780602|r  163 PKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYA  242 (400)
Q Consensus       163 ~~~k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~  242 (400)
                      +++|++++||||||||.+|+++++++|+++| ++||++||+||+|++++|++..+++ .++ ++..+++|+++|+||+|+
T Consensus       158 ~~tk~i~l~nP~NPTG~v~s~e~l~~i~~la-~~~~i~iIsDEiY~~l~~~g~~~~~-~~~-~~~~~~~I~~~S~SK~~~  234 (381)
T PRK06375        158 PKTRAIIINNPVNPTGKVLSEKEIRELVDFA-LENNLYIVSDEIYEDLIYRGKLFSP-ASI-PEAFDKTITLNGFSKGYA  234 (381)
T ss_pred             CCCEEEEECCCCCCCCCCCCHHHHHHHHHHH-HHCEEEEEECCCHHHHCCCCCCCCH-HHH-HHHHCCEEEEEHHHHHHH
T ss_conf             6774999899979889999999999999988-7565899813205755169987785-340-211065799841022433


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEECCC
Q ss_conf             34454442211012268753100122233222222222222346764322222211000000024553047760330274
Q gi|254780602|r  243 MTGLRIGYAAGALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQGVPGIRYMIPDG  322 (400)
Q Consensus       243 ~~G~RiG~~v~~~~li~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~~~~~L~~~~g~~~~~p~g  322 (400)
                      +||||+||+++++++++.+.++++...++++.+.|.++..+|++ .++...+++.|++||+.+.+.|++.+++++..|+|
T Consensus       235 ~~G~RiG~~i~~~~~i~~~~~~~~~~~~~~~~~~q~aa~~al~~-~~~~~~~~~~~~~rr~~~~~~l~~~~~~~~~~P~G  313 (381)
T PRK06375        235 MTGWRIGYMVAPEEIVEAANKIQQQTITCASSISQYAALRALDD-DESPKHMREEFEKRRDLVVSILKESDNLHVYEPEG  313 (381)
T ss_pred             CCCCCEEEEEECHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCE
T ss_conf             14655599983899999999999754467562999999999628-27799999999999999999985189977956781


Q ss_pred             CEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCCC--CEEEEEEECCHHHHHHHHHHHHHHHHHC
Q ss_conf             0899862641023321133224898999999998739799835022899--7289996299999999999999999860
Q gi|254780602|r  323 AFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGHG--PSIRISYAVSDAILEEACVRIKRFCHSL  399 (400)
Q Consensus       323 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~--~~iRis~~~~~e~l~~al~rl~~~l~~l  399 (400)
                      |||+|++++.           ..++.+|+.+|++++||+++||+.||.+  +|+||+|+.++++|++|++||++|+++|
T Consensus       314 ~~~~~~~~~~-----------~~~~~~~~~~ll~~~gV~v~PG~~Fg~~g~~~~Ri~~a~~~e~l~ea~~RL~~~~~~l  381 (381)
T PRK06375        314 AFYVFPGYES-----------DIKSYKAAENLLENKNVVVTPGSAFGRQGEHHFRISFATSEDIIKEGIERIGKFFKSI  381 (381)
T ss_pred             EEEEEEECCC-----------CCCHHHHHHHHHHHCCEEEECCHHHCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHC
T ss_conf             4899560799-----------9898999999998599999787354889999799998199999999999999999859


No 28 
>PRK08636 aspartate aminotransferase; Provisional
Probab=100.00  E-value=0  Score=646.03  Aligned_cols=385  Identities=24%  Similarity=0.403  Sum_probs=354.9

Q ss_pred             HHHHHHCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCC-CCCCCCCCHHHHHHHHHHHHH
Q ss_conf             8898738975899999999999986997266565897498899999999999838875-699877898999999998642
Q gi|254780602|r    5 SNILRRVQPSATLVAAQRVRDLRSKGIDVLCLTAGEPDFDMPENVKYAVVRAMERGET-KYTAVAGISPLREAIVEKFRR   83 (400)
Q Consensus         5 s~~~~~l~~s~~~~~~~~~~~~~~~g~~ii~l~~G~p~~~~p~~i~~a~~~al~~~~~-~Y~~~~G~~~lR~aia~~~~~   83 (400)
                      .+|+++|+++++.++.+++++++++|+|||+|++|+|||++|+.|++|+.++++++.+ ||++++|+|+||++||+||++
T Consensus         7 ~~r~~~l~~~~~~~~~~~~~~~~~~G~~vi~l~iG~Pd~~~P~~i~~a~~~a~~~~~~~gY~~~~G~~eLR~aia~~~~~   86 (403)
T PRK08636          7 FDKIKRLPKYVFAEVNELKMAARRAGEDVIDFSMGNPDGPTPQHIIDKLCESAQKPKTHGYSVSKGIYKLRLAICNWYKR   86 (403)
T ss_pred             HHHHHHCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf             15787499988999999999998659986889796899987999999999997699887899974729999999999999


Q ss_pred             HCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH----HH
Q ss_conf             101333322-3323345433332222222332232222333323222222222222222222222322210333----10
Q gi|254780602|r   84 DNDLHYTSD-QIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNFQVSPEK----LE  158 (400)
Q Consensus        84 ~~g~~~~~e-~I~it~G~~~~l~~~~~~~~~~Gd~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~~~~~~~d~~~----l~  158 (400)
                      ++|++++|| +|++|+|+++|+.++++++++|||+|++++|+|+.|...+.+.|++++.+++..+++|.+|.+.    ++
T Consensus        87 ~~g~~~~p~~~I~vt~Ga~~al~~~~~al~~pGD~Vli~~P~Y~~y~~~~~~~g~~~~~~~l~~~~~~~~d~~~~~~~le  166 (403)
T PRK08636         87 KYNVDLDPDTEVVATMGSKEGYVHLVQAITNPGDVAIVPDPAYPIHSQAFILAGGNVHKMPLEYNEDFELDEDKFFENLE  166 (403)
T ss_pred             HCCCCCCCCCEEEEECCHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHCHH
T ss_conf             70999999874999179899999999997799998997788870389999984996899743357774246665202589


Q ss_pred             CC---CCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEC
Q ss_conf             00---122122012113542100001233332111223333320111012211000001223322211123332257414
Q gi|254780602|r  159 QA---ITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVN  235 (400)
Q Consensus       159 ~~---i~~~~k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~  235 (400)
                      +.   .++|+|+|++||||||||.+|+++++++|+++| +++|++||+||+|++++|++.+++++..+ ++..+++|+++
T Consensus       167 ~~~~~~~~ktk~iiln~P~NPTG~v~s~~~l~~i~~la-~~~~i~visDEiY~~l~~~g~~~~s~~~~-~~~~~~~i~~~  244 (403)
T PRK08636        167 KALRESSPKPKYVVVNFPHNPTTATVEKSFYERLVALA-KKERFYIISDIAYADITFDGYKTPSILEV-EGAKDVAVESY  244 (403)
T ss_pred             HHHHHCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHH-HHCCEEEEECCCHHHEEECCCCCCCCCCC-CCCCCCCCCCC
T ss_conf             98762688717999899989988788999999999999-86593899626400000179878741027-53001332224


Q ss_pred             CCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCC
Q ss_conf             65443223445444221101226875310012223322222222222234676432222221100000002455304776
Q gi|254780602|r  236 GVSKAYAMTGLRIGYAAGALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQGVPGI  315 (400)
Q Consensus       236 S~SK~~~~~G~RiG~~v~~~~li~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~~~~~L~~~~g~  315 (400)
                      ||||+|++||||+||+++++++++.+.+++++...+++++.|.++..+|+..+++++++++.|++||+.+.+.|++. |+
T Consensus       245 s~SK~~~~~G~RiG~ii~~~~li~~~~~~~~~~~~~~~~~~q~aa~~al~~~~~~~~~~~~~y~~rr~~l~~~l~~~-g~  323 (403)
T PRK08636        245 TLSKSYNMAGWRVGFVVGNKKLIGALKKIKSWLDYGMFTPIQVAATIALDGDQSCVEEIRETYEKRRDVLIKSFENA-GW  323 (403)
T ss_pred             CCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHC-CC
T ss_conf             42002577641289997399999999999986346856899999999983989999999999999999999999865-97


Q ss_pred             EEEECCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCCC--CEEEEEEECCHHHHHHHHHHHH
Q ss_conf             03302740899862641023321133224898999999998739799835022899--7289996299999999999999
Q gi|254780602|r  316 RYMIPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGHG--PSIRISYAVSDAILEEACVRIK  393 (400)
Q Consensus       316 ~~~~p~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~--~~iRis~~~~~e~l~~al~rl~  393 (400)
                      ++..|+||||+|+++++...        ..++.+|+.+|++++||+++||+.||..  +||||||+.++++|++|++||+
T Consensus       324 ~~~~P~g~~y~w~~l~~~~~--------~~~~~ef~~~ll~~~gV~v~PG~~Fg~~g~~~vRisf~~~~e~l~ea~~Rl~  395 (403)
T PRK08636        324 ELQKPRASMFVWAKIPEPFR--------HLGSLEFSKQLLTEAKVAVSPGIGFGEYGDEYVRIALIENENRIRQAARNIK  395 (403)
T ss_pred             EECCCCCEEEEEEECCCCCC--------CCCHHHHHHHHHHCCCEEEECCHHHCCCCCCEEEEEECCCHHHHHHHHHHHH
T ss_conf             00378810389787875447--------8998999999997497999887532889998799997189999999999999


Q ss_pred             HHHHHCC
Q ss_conf             9998609
Q gi|254780602|r  394 RFCHSLQ  400 (400)
Q Consensus       394 ~~l~~l~  400 (400)
                      +||++||
T Consensus       396 ~~l~e~~  402 (403)
T PRK08636        396 KFLKEFE  402 (403)
T ss_pred             HHHHHHC
T ss_conf             9999844


No 29 
>PRK06220 consensus
Probab=100.00  E-value=0  Score=641.03  Aligned_cols=376  Identities=36%  Similarity=0.597  Sum_probs=353.2

Q ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             36788987389758999999999999869972665658974988999999999998388756998778989999999986
Q gi|254780602|r    2 VFISNILRRVQPSATLVAAQRVRDLRSKGIDVLCLTAGEPDFDMPENVKYAVVRAMERGETKYTAVAGISPLREAIVEKF   81 (400)
Q Consensus         2 ~~~s~~~~~l~~s~~~~~~~~~~~~~~~g~~ii~l~~G~p~~~~p~~i~~a~~~al~~~~~~Y~~~~G~~~lR~aia~~~   81 (400)
                      -++|+|++.++||+++++.+++++++++|+|||+||+|+||||+|+.|++|++++++++.++|+++.|.++||++||+||
T Consensus         2 ~~ls~r~~~~~~s~~~~i~~~a~~~~~~G~dvi~l~iG~pdf~~p~~i~~a~~~~~~~~~~~Y~~~~G~~~lreaia~~~   81 (384)
T PRK06220          2 CMISKRVEDIKPFYVMDVLERAQELERQGRDIIHLEVGEPDFPTPECVCEAACAAIERGLTHYTHSLGLPELREAIAEHY   81 (384)
T ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf             47899986689659999999999999669980799998899997899999999998549999899978699999999999


Q ss_pred             HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCC
Q ss_conf             42101333322332334543333222222233223222233332322222222222222222222232221033310001
Q gi|254780602|r   82 RRDNDLHYTSDQIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQAI  161 (400)
Q Consensus        82 ~~~~g~~~~~e~I~it~G~~~~l~~~~~~~~~~Gd~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i  161 (400)
                      ++++|++++||+|++|+|+++||.++++++++|||+|++++|+|+.|...+...|++++.+|+.++++|.+|+|++++++
T Consensus        82 ~~~~g~~~~pd~I~vt~G~~~al~~~~~~l~~pGD~Vlv~~P~Y~~~~~~~~~~g~~~v~v~~~~~~~~~~d~~~l~~~~  161 (384)
T PRK06220         82 RRRYGVDVDPDQVIVTSGTSPAMLMVFMALLNKGDEVILSDPHYACYPNFVKFLGGTPVFVPVYEEDGFQYRPEAIRACL  161 (384)
T ss_pred             HHHHCCCCCHHEEEECCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHCCCEEEEECCCCCCCCCCCHHHHHHHC
T ss_conf             99868998801289868889999999999818999899778988763999998498399922463237677999999747


Q ss_pred             CCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCC
Q ss_conf             22122012113542100001233332111223333320111012211000001223322211123332257414654432
Q gi|254780602|r  162 TPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAY  241 (400)
Q Consensus       162 ~~~~k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~  241 (400)
                      ++++|++++||||||||.+|+++++++|+++     +++||+||+|++++|++.++ ++..    ..+++|+++||||+|
T Consensus       162 ~~~~k~i~l~~P~NPtG~v~s~e~l~~l~~~-----~~~vIsDEiY~~l~~~~~~~-s~~~----~~~~~i~~~S~SK~~  231 (384)
T PRK06220        162 TPRTKAILINSPSNPTGHVLSPERLAGIASL-----GIPIISDEIYHGLVYEGREH-SILE----FTDNAFVLNGFSKLY  231 (384)
T ss_pred             CCCCEEEEECCCCCCCCCCCCHHHHHHHHHH-----CCEEEECCCHHHHCCCCCCC-CHHH----CCCCEEEEEECHHHC
T ss_conf             8887399972899987867719999998730-----98897246268641589988-8211----478789997423530


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEE-EEC
Q ss_conf             2344544422110122687531001222332222222222223467643222222110000000245530477603-302
Q gi|254780602|r  242 AMTGLRIGYAAGALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQGVPGIRY-MIP  320 (400)
Q Consensus       242 ~~~G~RiG~~v~~~~li~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~~~~~L~~~~g~~~-~~p  320 (400)
                      ++||||+||+++|+++++.+.++++....+++++.|.++..+|++.++|+.++++.|++||+++.+.|+++ |+.+ ..|
T Consensus       232 ~~~G~RiG~~i~~~~~i~~l~~~~~~~~~~~~~~~q~a~~~al~~~~~~~~~~~~~~~~~r~~l~~~L~~~-~~~~~~~P  310 (384)
T PRK06220        232 AMTGWRLGYLIVPPSCVRALQKLHQNFFICANSVVQEAGIAALKQAQEDVARMRQIYNERRQYMIKRLREM-GFGIRVEP  310 (384)
T ss_pred             CCCCCCEEEEEECHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCCCCC
T ss_conf             78653569999889999999999986157898799999999995839999999999999999999999975-99856389


Q ss_pred             CCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCC--CCEEEEEEECCHHHHHHHHHHHHHHHHH
Q ss_conf             74089986264102332113322489899999999873979983502289--9728999629999999999999999986
Q gi|254780602|r  321 DGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGH--GPSIRISYAVSDAILEEACVRIKRFCHS  398 (400)
Q Consensus       321 ~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~--~~~iRis~~~~~e~l~~al~rl~~~l~~  398 (400)
                      +||||+|++++..          ..++.+|+.+|++++||+++||+.||.  ++|||++|+.++++|++|++||++||++
T Consensus       311 ~g~~y~~~~~~~~----------~~d~~~~~~~ll~~~gV~v~PG~~Fg~~~~g~iRl~f~~~~e~l~ea~~RL~~~l~~  380 (384)
T PRK06220        311 TGAFYVLADARHL----------SGDSYALAFDILEEAGVGVTPGIDFGNGGEGYLRFSYANSLENIAEGLDRLEQFLEK  380 (384)
T ss_pred             CEEEEEEEECCCC----------CCCHHHHHHHHHHHCCEEEECCHHCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHH
T ss_conf             8526885778878----------999999999999839999977810088999979999709999999999999999998


No 30 
>PRK08361 aspartate aminotransferase; Provisional
Probab=100.00  E-value=0  Score=642.40  Aligned_cols=379  Identities=34%  Similarity=0.573  Sum_probs=355.3

Q ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             67889873897589999999999998699726656589749889999999999983887569987789899999999864
Q gi|254780602|r    3 FISNILRRVQPSATLVAAQRVRDLRSKGIDVLCLTAGEPDFDMPENVKYAVVRAMERGETKYTAVAGISPLREAIVEKFR   82 (400)
Q Consensus         3 ~~s~~~~~l~~s~~~~~~~~~~~~~~~g~~ii~l~~G~p~~~~p~~i~~a~~~al~~~~~~Y~~~~G~~~lR~aia~~~~   82 (400)
                      ++|+|++.+++|.++++.+++.+    .+|||+||+|+|||++|+.|++|++++++++.++|+++.|.++||++||+||+
T Consensus         8 ~~a~r~~~~~~s~irel~~~~~~----~~dvI~l~~G~pd~~~p~~i~~a~~~~l~~~~~~Y~~~~G~~~LReaia~~~~   83 (390)
T PRK08361          8 FMAGRINLIQRSKIRELFERASK----MENVISLGIGEPDFDTPKNIKEAAKRALDEGWTHYTPNAGIPELREAIAEYYK   83 (390)
T ss_pred             HHHHHHHCCCCCHHHHHHHHHHC----CCCCEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf             99899724998879999997737----99938998998999878999999999984688888998887999999999999


Q ss_pred             HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCC
Q ss_conf             21013333223323345433332222222332232222333323222222222222222222222322210333100012
Q gi|254780602|r   83 RDNDLHYTSDQIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQAIT  162 (400)
Q Consensus        83 ~~~g~~~~~e~I~it~G~~~~l~~~~~~~~~~Gd~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~  162 (400)
                      +++|+++++|+|++|+|+++||.++++++++|||+|++++|+|+.|...+...|++++.+|++++++|.+|+++++++++
T Consensus        84 ~~~g~~v~~d~I~vt~G~~~al~~~~~~l~~pGD~Vli~~P~Y~~y~~~~~~~g~~~~~vpl~~~~~~~~d~~~l~~~~~  163 (390)
T PRK08361         84 KFYGVDVDVDNVIVTAGAYEATYLAFESLLEQGDEVIIPDPAFVCYVEDAKIAEAKPIRIPLREENNFQPDPDELLEAIT  163 (390)
T ss_pred             HHHCCCCCHHEEEECCCHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHCC
T ss_conf             98788988232998778999999999996599998998476077799999982997999971587898779999997365


Q ss_pred             CCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCC
Q ss_conf             21220121135421000012333321112233333201110122110000012233222111233322574146544322
Q gi|254780602|r  163 PKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYA  242 (400)
Q Consensus       163 ~~~k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~  242 (400)
                      +++|++++||||||||.+||++++++|+++| +++|++||+||+|++++|++.++.++.+..   .+++|+++||||+|+
T Consensus       164 ~~~k~ivl~~P~NPTG~v~s~e~l~~l~~la-~~~~i~ii~DE~Y~~l~~~~~~~~~~~~~~---~~~~i~~~S~SK~~~  239 (390)
T PRK08361        164 KRTRMIVINYPNNPTGAVLDKETAKAIADIA-EDYNIYILSDEPYEHFLYEDAKHYPMIKFA---PDNTILANSFSKTFA  239 (390)
T ss_pred             CCCEEEEECCCCCCCCCCCCHHHHHHHHHHH-HHCCCEECCHHHHHHHHCCCCCCCCHHHHC---CCCEEEEECCHHHCC
T ss_conf             4675999889989757786678888999999-863955347065687603887542011313---552899802524147


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCHHHHHHCCCCCEEEEC
Q ss_conf             344544422110122687531001222332222222222223467643--222222110000000245530477603302
Q gi|254780602|r  243 MTGLRIGYAAGALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGPQDF--VVNNRKIFEYRRDLCVAQLQGVPGIRYMIP  320 (400)
Q Consensus       243 ~~G~RiG~~v~~~~li~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~--~~~~~~~~~~~r~~~~~~L~~~~g~~~~~p  320 (400)
                      +||||+||+++|+++++.+.+++++...+++++.|.+++.++...+.|  ++++++.|++||+.+.+.|++++|+++..|
T Consensus       240 ~~G~RiG~~v~~~~~i~~~~~~~~~~~~~~~~~~q~a~~~al~~~~~~~~~~~~~~~~~~rr~~~~~~l~~~~g~~~~~P  319 (390)
T PRK08361        240 MTGWRLGFVIAPTQVIREMIKLHAYVIGNVASFVQIAGIEALRSKESWKAVEEMRKEYNERRKLVLKRLNKMPHITVFEP  319 (390)
T ss_pred             CCCCCEEEEEECHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCC
T ss_conf             87423799983899999999997660278768999999999848504899999999999999999999985899686688


Q ss_pred             CCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCC--CCEEEEEEECCHHHHHHHHHHHHHHHHH
Q ss_conf             74089986264102332113322489899999999873979983502289--9728999629999999999999999986
Q gi|254780602|r  321 DGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGH--GPSIRISYAVSDAILEEACVRIKRFCHS  398 (400)
Q Consensus       321 ~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~--~~~iRis~~~~~e~l~~al~rl~~~l~~  398 (400)
                      +||||+|+++++.          ..++++|+++|++++||+++||+.||.  ++||||||+.+++++++|++||++++++
T Consensus       320 ~gg~~lw~~l~~~----------~~~~~~~~~~ll~~~gV~v~PG~~Fg~~g~~~iRl~f~~~~e~l~eal~Rl~~al~~  389 (390)
T PRK08361        320 KGAFYVFPKIDET----------DMSSEDFSEWLLEKARVVVIPGTAFGKMGEGYVRISYATSKEKLIEAMERMEKALSK  389 (390)
T ss_pred             CEEEEEEEECCCC----------CCCHHHHHHHHHHHCCEEEECCHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHH
T ss_conf             8666997888888----------989999999999719999988732288999979999729999999999999999971


Q ss_pred             C
Q ss_conf             0
Q gi|254780602|r  399 L  399 (400)
Q Consensus       399 l  399 (400)
                      |
T Consensus       390 L  390 (390)
T PRK08361        390 L  390 (390)
T ss_pred             C
T ss_conf             9


No 31 
>PRK07778 consensus
Probab=100.00  E-value=0  Score=641.37  Aligned_cols=379  Identities=28%  Similarity=0.422  Sum_probs=346.7

Q ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             67889873897589999999999998699726656589749889999999999983887569987789899999999864
Q gi|254780602|r    3 FISNILRRVQPSATLVAAQRVRDLRSKGIDVLCLTAGEPDFDMPENVKYAVVRAMERGETKYTAVAGISPLREAIVEKFR   82 (400)
Q Consensus         3 ~~s~~~~~l~~s~~~~~~~~~~~~~~~g~~ii~l~~G~p~~~~p~~i~~a~~~al~~~~~~Y~~~~G~~~lR~aia~~~~   82 (400)
                      .+|.| ..|+||.+.++..++++++++|+|||+|++|+||||+|+.|+++++++++.+.++|+++.|+|+||++||+||+
T Consensus         3 ~~~~~-~~~~p~~~~~i~~~a~~~~~~g~dvi~l~iG~Pd~~~P~~i~~a~~~a~~~~~~~Y~~~~G~p~LR~aia~~~~   81 (386)
T PRK07778          3 RVALR-AGIPPFYVMDVWLAAAERQRTHGDLVNLSAGQPSAGAPEPVRAAAAAALHRNQLGYTVALGIPELREAIAADYQ   81 (386)
T ss_pred             CCCCC-CCCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf             53334-68998189999999999996699907885989999868999999999863499998999784999999999999


Q ss_pred             HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCC
Q ss_conf             21013333223323345433332222222332232222333323222222222222222222222322210333100012
Q gi|254780602|r   83 RDNDLHYTSDQIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQAIT  162 (400)
Q Consensus        83 ~~~g~~~~~e~I~it~G~~~~l~~~~~~~~~~Gd~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~  162 (400)
                      +++|++++||||++|+|+++||+++++++++|||+|++++|+|+.|...++..|++++++|++++++|.+|.+.+++ +.
T Consensus        82 ~~~g~~~~pe~I~vt~Ga~~al~~~~~~l~~pGD~Vlv~~P~Y~~y~~~~~~~g~~~v~vp~~~~~~~~~~~~~l~~-~~  160 (386)
T PRK07778         82 RRHGITVEPDDVVVTTGSSGGFLLAFLACFDVGDRVAMASPGYPCYRNILSALGCEVVEIPCGPDTRFQPTAAMLAE-LD  160 (386)
T ss_pred             HHHCCCCCHHHEEECCCHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHCCCEEEECCCCCCCCCCCHHHHHHH-CC
T ss_conf             98689988554898178799999999996499998998678651079999973982572367744566723889862-58


Q ss_pred             CCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCC
Q ss_conf             21220121135421000012333321112233333201110122110000012233222111233322574146544322
Q gi|254780602|r  163 PKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYA  242 (400)
Q Consensus       163 ~~~k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~  242 (400)
                      +++|+|++||||||||.+++++++++|+++|. ++|++||+||+|++++|++.++.+..   .+..+++|+++||||+|+
T Consensus       161 ~~~k~iil~~P~NPTG~v~s~~~l~~l~~la~-~~~i~iisDEiY~~l~~~~~~~~~~~---~~~~~~~i~i~S~SK~~~  236 (386)
T PRK07778        161 PPVRGVIVASPANPTGTVIAPEELAAIASWCE-ASGVRLISDEVYHGLVYEGAPPTSCA---WETSREAVVVNSFSKYYA  236 (386)
T ss_pred             CCCEEEEECCCCCCCCCCCHHHHHHHHHHHHH-HCCEEEEECCCHHHHCCCCCCCCCCC---CCCCCCEEEEECCCCCCC
T ss_conf             66439998999898877850799999999985-37879994343253115899986430---024786899930431125


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCHHHHHHCCCCCE-EEEC
Q ss_conf             344544422110122687531001222332222222222223467-64322222211000000024553047760-3302
Q gi|254780602|r  243 MTGLRIGYAAGALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGP-QDFVVNNRKIFEYRRDLCVAQLQGVPGIR-YMIP  320 (400)
Q Consensus       243 ~~G~RiG~~v~~~~li~~l~~~~~~~~~~~~~~~q~a~~~~l~~~-~~~~~~~~~~~~~~r~~~~~~L~~~~g~~-~~~p  320 (400)
                      +||||+||+++|+++++.+.+++++..+|++.+.|.+++.++... ..+++..++.|++||+.+.+.|+++ |+. +.+|
T Consensus       237 ~~G~RiG~~~~p~~l~~~~~~~~~~~~~~~~~~~Q~aa~~al~~~~~~~~~~~~~~~~~~r~~l~~~L~~~-g~~~~~p~  315 (386)
T PRK07778        237 MTGWRLGWLLVPTELRRAVDRLTGNFTICPPALSQYAAVAAFTPEATAEADGHLAHYAENRRLLLDGLRAL-GITRLAPA  315 (386)
T ss_pred             CCCCEEEEEEECHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHC-CCCEECCC
T ss_conf             67760699984899999999998507678778999999999560128999999999999999999999975-99541799


Q ss_pred             CCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCC---CCEEEEEEECCHHHHHHHHHHHHHHHH
Q ss_conf             74089986264102332113322489899999999873979983502289---972899962999999999999999998
Q gi|254780602|r  321 DGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGH---GPSIRISYAVSDAILEEACVRIKRFCH  397 (400)
Q Consensus       321 ~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~---~~~iRis~~~~~e~l~~al~rl~~~l~  397 (400)
                      +||||+|++++..          ..++.+|+.+|++++||+++||+.||.   ++||||||+.++++|++|++||++|++
T Consensus       316 ~G~fy~~~~~~~~----------~~d~~~f~~~Ll~~~gV~v~PG~~Fg~~~g~~~vRlsf~~~~~~l~eal~RL~~~l~  385 (386)
T PRK07778        316 DGAFYVYADVSHL----------TDDSLAFCSKLLADTGVAIAPGIDFDTVRGNSFVRLSFAGPTADIEEALRRIGSWLR  385 (386)
T ss_pred             CEEEEEEEECCCC----------CCCHHHHHHHHHHHCCEEEECCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHC
T ss_conf             8478997889888----------999999999999839999975856688999996999983989999999999999965


Q ss_pred             H
Q ss_conf             6
Q gi|254780602|r  398 S  398 (400)
Q Consensus       398 ~  398 (400)
                      +
T Consensus       386 s  386 (386)
T PRK07778        386 S  386 (386)
T ss_pred             C
T ss_conf             9


No 32 
>PRK07683 aminotransferase A; Validated
Probab=100.00  E-value=0  Score=638.01  Aligned_cols=380  Identities=36%  Similarity=0.593  Sum_probs=352.5

Q ss_pred             CH-HHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             93-67889873897589999999999998699726656589749889999999999983887569987789899999999
Q gi|254780602|r    1 MV-FISNILRRVQPSATLVAAQRVRDLRSKGIDVLCLTAGEPDFDMPENVKYAVVRAMERGETKYTAVAGISPLREAIVE   79 (400)
Q Consensus         1 m~-~~s~~~~~l~~s~~~~~~~~~~~~~~~g~~ii~l~~G~p~~~~p~~i~~a~~~al~~~~~~Y~~~~G~~~lR~aia~   79 (400)
                      |. ++|+|++++++|+++++.+.++    .+.|||+||+|+|||++|+.|++|+.++++++.++|+++.|.++||++||+
T Consensus         1 m~~~~~~r~~~~~~s~ir~~~~~~~----~~~dvI~l~ig~pdf~~p~~i~~a~~~~~~~~~~~Y~~~~G~~~lreaia~   76 (387)
T PRK07683          1 MEHLINPRVKDIQISGIRQFSNLVQ----NYDNLISLTIGQPDFPTPSHVKEAAKRAIDENYTSYTHNAGLLELRKAACN   76 (387)
T ss_pred             CHHHHHHHHHHCCCCHHHHHHHHHH----CCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH
T ss_conf             9378889985189888999999986----799918999998999978999999999985799988999887999999999


Q ss_pred             HHHHHCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf             8642101333322-332334543333222222233223222233332322222222222222222222232221033310
Q gi|254780602|r   80 KFRRDNDLHYTSD-QIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNFQVSPEKLE  158 (400)
Q Consensus        80 ~~~~~~g~~~~~e-~I~it~G~~~~l~~~~~~~~~~Gd~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~  158 (400)
                      ||++++|+++++| +|++|+|+++||.++++++++|||+|++++|+|+.|...++.+|++++.+++++ ++|.+|+++++
T Consensus        77 ~~~~~~g~~~~~~~~I~it~G~~~al~~~~~~~~~pGD~Vlv~~P~Y~~~~~~~~~~g~~~v~v~~~~-~~~~~d~~~le  155 (387)
T PRK07683         77 FVKDKYDLHYSPESEIIVTIGASEAIDIAFRTILEPGTEVILPAPIYPGYEPIIRLCGATPVFIDTRE-TGFRLTAEALE  155 (387)
T ss_pred             HHHHHHCCCCCCCCEEEEECCHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHCCCEEEECCCCC-CCCCCCHHHHH
T ss_conf             99998589989887599927829999999999769999899837876656999997087235368786-78878999999


Q ss_pred             CCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCC
Q ss_conf             00122122012113542100001233332111223333320111012211000001223322211123332257414654
Q gi|254780602|r  159 QAITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVS  238 (400)
Q Consensus       159 ~~i~~~~k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~S  238 (400)
                      +++++++|++++||||||||.+||.+++++|+++| +++|++||+||+|++++|++ ++.++.++ ++..+++|+++|+|
T Consensus       156 ~~~~~~~k~iil~~P~NPtG~v~s~e~l~~i~~la-~~~~i~ii~DEiY~~l~~~~-~~~s~~~~-~~~~~~~i~~~S~S  232 (387)
T PRK07683        156 NAITEKTRCVVLPYPSNPTGVTLSKEELKDIANVL-KDKNIFVLSDEIYSELVYDQ-PHTSIAHF-PEMREKTIVINGLS  232 (387)
T ss_pred             HHCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHH-HCCCCEEECCCCHHHHHCCC-CCCCHHHC-CCCCCEEEEEECCC
T ss_conf             73552575786479959897887899999999976-13694475465135540699-87764334-45554036750441


Q ss_pred             CCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEE
Q ss_conf             43223445444221101226875310012223322222222222234676432222221100000002455304776033
Q gi|254780602|r  239 KAYAMTGLRIGYAAGALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQGVPGIRYM  318 (400)
Q Consensus       239 K~~~~~G~RiG~~v~~~~li~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~~~~~L~~~~g~~~~  318 (400)
                      |+|++||||+||+++|+++++++.+++++...+++++.|.++..++....++.+.+++.|++||+.+.+.|.+. |+.+.
T Consensus       233 K~~~~~G~RiG~i~~~~~~~~~~~~~~~~~~~~~~~~~q~aa~~al~~~~~~~~~~~~~~~~r~~~~~~~L~~~-g~~~~  311 (387)
T PRK07683        233 KSHSMTGWRIGFLFAPSYLAKHILKVHQYNVTCASSISQYAALEALTAGKDDAKMMRHQYKKRRDYVYNRLISM-GLDVE  311 (387)
T ss_pred             CCCCCCCCCEEEEECCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHC-CCCEE
T ss_conf             01367652279997599999999999975657886899999999997698899999999999999999999876-99556


Q ss_pred             ECCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCC--CCEEEEEEECCHHHHHHHHHHHHHHH
Q ss_conf             0274089986264102332113322489899999999873979983502289--97289996299999999999999999
Q gi|254780602|r  319 IPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGH--GPSIRISYAVSDAILEEACVRIKRFC  396 (400)
Q Consensus       319 ~p~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~--~~~iRis~~~~~e~l~~al~rl~~~l  396 (400)
                      .|+||||+|++++..          ..++.+|+.+|++++||+++||+.||.  ++|+||||+.++++|++|++||++|+
T Consensus       312 ~P~G~~~~w~~~~~~----------~~~~~~~~~~ll~~~gV~v~PG~~Fg~~g~g~~Rlsfa~~~e~l~eal~Rl~~~l  381 (387)
T PRK07683        312 KPTGAFYIFPSIGHF----------TMSSFDFALDLVEEAGLAVVPGSAFSEYGEGYVRLSYAYSIETLKEGLDRLEAFL  381 (387)
T ss_pred             CCCEEEEEEEECCCC----------CCCHHHHHHHHHHHCCEEEECCHHHCCCCCCEEEEEEECCHHHHHHHHHHHHHHH
T ss_conf             788127996787888----------9997999999998399999878422889988699997199999999999999999


Q ss_pred             HHC
Q ss_conf             860
Q gi|254780602|r  397 HSL  399 (400)
Q Consensus       397 ~~l  399 (400)
                      ++.
T Consensus       382 ~~~  384 (387)
T PRK07683        382 QKK  384 (387)
T ss_pred             HHH
T ss_conf             987


No 33 
>PRK08912 hypothetical protein; Provisional
Probab=100.00  E-value=0  Score=641.38  Aligned_cols=381  Identities=26%  Similarity=0.438  Sum_probs=353.4

Q ss_pred             CHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             93678898738975899999999999986997266565897498899999999999838875699877898999999998
Q gi|254780602|r    1 MVFISNILRRVQPSATLVAAQRVRDLRSKGIDVLCLTAGEPDFDMPENVKYAVVRAMERGETKYTAVAGISPLREAIVEK   80 (400)
Q Consensus         1 m~~~s~~~~~l~~s~~~~~~~~~~~~~~~g~~ii~l~~G~p~~~~p~~i~~a~~~al~~~~~~Y~~~~G~~~lR~aia~~   80 (400)
                      |.-+|+++.++++|.+.++.+.|+     ++|+|+|++|+|||++|++|++++.++++++.++|+++.|+++||++||+|
T Consensus         1 m~~~n~~~~~~~~~~~~~~~~la~-----~~~~I~L~~G~Pd~~~p~~i~~a~~~a~~~~~~~Y~~~~G~~~LR~aia~~   75 (387)
T PRK08912          1 MKSLNPVFADLPTTIFEVMSQLAR-----EHGAINLGQGFPDDPGPEDVRRAAADALLDGYNQYPPMMGLPELRQAVAAH   75 (387)
T ss_pred             CCCCCCCHHHCCCCHHHHHHHHHC-----CCCCEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH
T ss_conf             977561354479989999999863-----799277369789999889999999999852999898998729999999999


Q ss_pred             HHHHCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHC
Q ss_conf             642101333322-3323345433332222222332232222333323222222222222222222222322210333100
Q gi|254780602|r   81 FRRDNDLHYTSD-QIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQ  159 (400)
Q Consensus        81 ~~~~~g~~~~~e-~I~it~G~~~~l~~~~~~~~~~Gd~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~  159 (400)
                      |++++|++++|+ +|++|+|+++||+++++++++|||+|++++|+|+.|...++.+|++++.++++++ +|.+|.+++++
T Consensus        76 ~~~~~g~~~~p~~~V~vt~Ga~~al~~~~~al~~pGD~Vlv~~P~y~~y~~~~~~~G~~~~~v~~~~~-~~~~d~~~l~~  154 (387)
T PRK08912         76 YARFHGLDLDPMTEVMVTSGATEALAAALLALVEPGDEVVLFQPLYDSYLPIIRRAGGVPRLVRLEPP-HWRLPEAALAA  154 (387)
T ss_pred             HHHHHCCCCCCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCEEEECCCCCC-CCCCCHHHHHH
T ss_conf             99986899898872998766899999999996699898999488081179999972988997565587-77889999985


Q ss_pred             CCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCC
Q ss_conf             01221220121135421000012333321112233333201110122110000012233222111233322574146544
Q gi|254780602|r  160 AITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSK  239 (400)
Q Consensus       160 ~i~~~~k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK  239 (400)
                      ++++++|+|++||||||||.+||.+++++|+++| ++||++||+||+|++++|++.++.|+.++ ++..+++|+++||||
T Consensus       155 ~~~~~tk~iil~~P~NPTG~v~s~e~l~~l~~~a-~~~~i~vi~DEiY~~l~~~~~~~~~~~~~-~~~~~~~i~i~S~SK  232 (387)
T PRK08912        155 AFSPRTKAVLLNNPLNPAGKVFPREDLALLAEFC-QRHDAVAICDEVWEHVVFDGRRHIPLMAL-PGMRERTVKIGSAGK  232 (387)
T ss_pred             CCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHH-HHCCEEEEECCCHHHEEECCCCCCHHHCC-CCCCCCEEEECCCCC
T ss_conf             2788866999899989888568699999999988-65797998026523315678654044406-676673699856777


Q ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEE
Q ss_conf             32234454442211012268753100122233222222222222346764322222211000000024553047760330
Q gi|254780602|r  240 AYAMTGLRIGYAAGALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQGVPGIRYMI  319 (400)
Q Consensus       240 ~~~~~G~RiG~~v~~~~li~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~~~~~L~~~~g~~~~~  319 (400)
                      +|+|||||+||+++++++++.+.+++++..++++.+.|.+++.+|...++|++++++.|++||+.+.+.|+++ |+.+.+
T Consensus       233 ~~~m~G~RiG~~~~~~~li~~l~~~~~~~~~~~~~~~Q~a~a~~l~~~~~~~~~~~~~~~~rr~~l~~~L~~~-g~~~~~  311 (387)
T PRK08912        233 IFSLTGWKVGFVCAAPPLLRVLAKAHQFLTFTTPPNLQRAVAYGLGKPDDYFEGMRADLARSRDRLAAGLRRI-GFPVLP  311 (387)
T ss_pred             EECCCCCCEEEEEECHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHC-CCEEEC
T ss_conf             5205533279998399999999999875855766999999999973877999999999999999999999976-985627


Q ss_pred             CCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCC----CCEEEEEEECCHHHHHHHHHHHHHH
Q ss_conf             274089986264102332113322489899999999873979983502289----9728999629999999999999999
Q gi|254780602|r  320 PDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGH----GPSIRISYAVSDAILEEACVRIKRF  395 (400)
Q Consensus       320 p~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~----~~~iRis~~~~~e~l~~al~rl~~~  395 (400)
                      |+|+||+|++++...        ...++++|+.+|++++||+++||+.|+.    .+||||||+.++|+|++|++||++|
T Consensus       312 ~~G~~~~~~~~~~~~--------~~~~~~~f~~~ll~e~gV~~vPG~~F~~~~~~~~~iRlsfa~~~e~l~ea~~RL~~~  383 (387)
T PRK08912        312 SQGTYFLTVDLAPLG--------LAEDDVAFCRRLVEEAGVAAIPVSAFYEEDPVTSVVRFCFAKRDATLDEAVERLAAA  383 (387)
T ss_pred             CCCEEEEEEECCCCC--------CCCCHHHHHHHHHHHCCEEEECCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHH
T ss_conf             981589988514558--------998999999999996899998150128999999859999799999999999999999


Q ss_pred             HHH
Q ss_conf             986
Q gi|254780602|r  396 CHS  398 (400)
Q Consensus       396 l~~  398 (400)
                      +++
T Consensus       384 lk~  386 (387)
T PRK08912        384 FRG  386 (387)
T ss_pred             HHC
T ss_conf             836


No 34 
>PRK06108 aspartate aminotransferase; Provisional
Probab=100.00  E-value=0  Score=640.48  Aligned_cols=377  Identities=29%  Similarity=0.417  Sum_probs=350.6

Q ss_pred             HHHHHHCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             88987389758999999999999869972665658974988999999999998388756998778989999999986421
Q gi|254780602|r    5 SNILRRVQPSATLVAAQRVRDLRSKGIDVLCLTAGEPDFDMPENVKYAVVRAMERGETKYTAVAGISPLREAIVEKFRRD   84 (400)
Q Consensus         5 s~~~~~l~~s~~~~~~~~~~~~~~~g~~ii~l~~G~p~~~~p~~i~~a~~~al~~~~~~Y~~~~G~~~lR~aia~~~~~~   84 (400)
                      ..+++.+++|.++++.+.++    .+.|||+||+|+|||++|+.|++|+.++++++.++|+++.|.++||++|++||+++
T Consensus         2 ~~~~~~~~~s~ire~~~~~~----~~~dvi~l~vgdpDf~~p~~i~~a~~~~~~~g~~~Y~~~~G~~~lreaia~~~~~~   77 (382)
T PRK06108          2 RPAVRALPESGIREVANAGR----GREDVLPFWFGESDLPTPDFIRDAAAAALADGETFYTHNLGIPELREALARYVSRL   77 (382)
T ss_pred             CCHHHCCCCCHHHHHHHHHC----CCCCCEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf             83031299878999998756----89991788898989998899999999998479983799988699999999999998


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCHHHHHHCCCCC
Q ss_conf             01333322332334543333222222233223222233332322222222222222222222-23222103331000122
Q gi|254780602|r   85 NDLHYTSDQIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDMVALCGGIPVFVDTQQ-DDNFQVSPEKLEQAITP  163 (400)
Q Consensus        85 ~g~~~~~e~I~it~G~~~~l~~~~~~~~~~Gd~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~-~~~~~~d~~~l~~~i~~  163 (400)
                      +|+++++|+|++|+|+++||.++++++++|||+|++++|+|+.|...++..|++++.+|++. +++|.+|++++++++++
T Consensus        78 ~g~~v~~d~I~it~G~~~al~~~~~~~~~pGD~Vlv~~P~Y~~~~~~~~~~g~~~~~vpl~~~~~~~~~d~~~le~~~~~  157 (382)
T PRK06108         78 HGATTPPERIAVTSSGVQALMLAAQALVGPGDEVVAVTPAWPNLVAAPKILGARVVCVPLQYGGGGWQLDVDRLLAAITP  157 (382)
T ss_pred             HCCCCCHHHEEECCCHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHCCCEEEECCCCCCCCCCCCCHHHHHHHCCC
T ss_conf             78898668499807899999999999669999899816878656999997388278534566678866799999964575


Q ss_pred             CCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCC-CCCCCCCCCCCCEEEEECCCCCCCC
Q ss_conf             122012113542100001233332111223333320111012211000001223-3222111233322574146544322
Q gi|254780602|r  164 KTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQF-SNIVNVEPSLYERTLVVNGVSKAYA  242 (400)
Q Consensus       164 ~~k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~-~s~~~~~~~~~~~~i~~~S~SK~~~  242 (400)
                      ++|++++||||||||.+||++++++|+++|. +||++||+||+|++++|++.++ +++.+.. +..+++|+++|+||+|+
T Consensus       158 ~~k~iil~~P~NPtG~v~s~e~l~~l~~la~-~~~v~iisDEiY~~l~f~~~~~~ps~~~~~-~~~~~~i~~~S~SK~f~  235 (382)
T PRK06108        158 RTRALFINSPNNPTGWTASRDDQQAILAHCR-RHGLWIVADEVYERLYYGGGGRAPSFLDIA-EPDDRIIFVNSFSKNWA  235 (382)
T ss_pred             CCEEEEECCCCCCCCHHCCHHHHHHHHHHHH-CCCCEEECHHHHHHHCCCCCCCCCHHHHHC-CCCCEEEEEECCCHHCC
T ss_conf             6649998899699662044788999999876-269753533433330138998883466523-66764999804303104


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEECCC
Q ss_conf             34454442211012268753100122233222222222222346764322222211000000024553047760330274
Q gi|254780602|r  243 MTGLRIGYAAGALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQGVPGIRYMIPDG  322 (400)
Q Consensus       243 ~~G~RiG~~v~~~~li~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~~~~~L~~~~g~~~~~p~g  322 (400)
                      +||||+||+++|+++++.+.++.++..++++.+.|.+++.+|+++++|++++++.|++||+.+.+.|++++|+++..|+|
T Consensus       236 ~~G~RiG~ii~~~~~~~~~~~~~~~~~~~~~~~~q~aa~~al~~~~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~P~g  315 (382)
T PRK06108        236 MTGWRLGWLVAPPSLGQDLEKLIEYNTSCVPQFVQRAAVAALDEGEDFVAQLVARLRRARDHLVDALRALPGVEVPKPDG  315 (382)
T ss_pred             CCCCEEEEEEECHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCE
T ss_conf             76761799997999999999999870377768999999999968626589999999999999999997379968737882


Q ss_pred             CEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCC--CCEEEEEEECCHHHHHHHHHHHHHHHHH
Q ss_conf             089986264102332113322489899999999873979983502289--9728999629999999999999999986
Q gi|254780602|r  323 AFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGH--GPSIRISYAVSDAILEEACVRIKRFCHS  398 (400)
Q Consensus       323 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~--~~~iRis~~~~~e~l~~al~rl~~~l~~  398 (400)
                      |||+|+++++           ..++.+|+.+|++++||+++||+.||.  ++|+||||+.++++|++|++||++|+++
T Consensus       316 ~~y~w~~~~~-----------~~~~~~~~~~ll~~~gV~v~PG~~Fg~~g~~~iRl~~a~~~~~l~eal~RL~~~l~k  382 (382)
T PRK06108        316 AMYAFFRLDG-----------ATDSLALAKRLVDEAGLGLAPGTAFGPGGEGFLRWCFARDPARLDEGVERLRRFLAR  382 (382)
T ss_pred             EEEEEEECCC-----------CCCHHHHHHHHHHHCCEEEECCHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHCC
T ss_conf             7999887999-----------999999999999969999987841188999979999629999999999999999667


No 35 
>PRK06207 aspartate aminotransferase; Provisional
Probab=100.00  E-value=0  Score=638.72  Aligned_cols=388  Identities=23%  Similarity=0.353  Sum_probs=356.2

Q ss_pred             CHHHHHHHHHCCCCHH--HHHHHHHHHHHH--CCCCE----EECCCCCCCC--CCCHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf             9367889873897589--999999999998--69972----6656589749--889999999999983887569987789
Q gi|254780602|r    1 MVFISNILRRVQPSAT--LVAAQRVRDLRS--KGIDV----LCLTAGEPDF--DMPENVKYAVVRAMERGETKYTAVAGI   70 (400)
Q Consensus         1 m~~~s~~~~~l~~s~~--~~~~~~~~~~~~--~g~~i----i~l~~G~p~~--~~p~~i~~a~~~al~~~~~~Y~~~~G~   70 (400)
                      ||.+++++.+|..-..  .++.+.++.++.  .|.++    |||++|+|||  |+|..|.++...+++.+.++|+++.|.
T Consensus         1 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~id~~~G~pD~~~PtP~~i~~~~~~~~~~g~~~Yt~~~G~   80 (406)
T PRK06207          1 MMSIEAKFAKLGTDNAPGQEVRQSAAGLDALLRGDPLPGRPVDFSHGDVDAHEPTPGSLELFSQGVERGGVQAYTEYRGD   80 (406)
T ss_pred             CCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCH
T ss_conf             95277999873766561789998887546764589889997237889999999986999999999973899889998672


Q ss_pred             HHHHHHHHHHHHHHCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----
Q ss_conf             899999999864210133332-233233454333322222223322322223333232222222222222222222----
Q gi|254780602|r   71 SPLREAIVEKFRRDNDLHYTS-DQIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDMVALCGGIPVFVDTQ----  145 (400)
Q Consensus        71 ~~lR~aia~~~~~~~g~~~~~-e~I~it~G~~~~l~~~~~~~~~~Gd~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~----  145 (400)
                      |+||+|||+||++++|+++++ |+|++|+|++++|+++++++++|||+|++++|+|+.|...++.+|+++++++++    
T Consensus        81 ~eLReAia~~~~~~~g~~~d~~d~Iivt~G~~~al~~a~~al~~pGDeViv~~P~y~~y~~~i~~~g~~~vpv~l~~~~~  160 (406)
T PRK06207         81 LEIRELVAARLAEFTGAPVDARDGLIITPGTQGALFLAVASTVTRGDKVAIVQPDYFANRKLVEFFEGEIVPVQLDYVSV  160 (406)
T ss_pred             HHHHHHHHHHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHCCCEEEEEECCCCCC
T ss_conf             99999999999998689999878699858779999999999758998799978987457999998298799985677677


Q ss_pred             CCCCCCCHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             22322210333100012212201211354210000123333211122333332011101221100000122332221112
Q gi|254780602|r  146 QDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEP  225 (400)
Q Consensus       146 ~~~~~~~d~~~l~~~i~~~~k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~  225 (400)
                      ++++|.+|+|+|+++++++||++++||||||||.+||++++++|+++| ++||++||+||+|++++|++.+++++.++ +
T Consensus       161 ~~~~~~~d~d~le~~i~~~tk~iil~nP~NPTG~v~s~e~l~~l~~la-~~~~i~visDEiY~~l~ydg~~~~~~~~~-~  238 (406)
T PRK06207        161 DETRAGLDLDQLEAAFKAGVRVFLFSNPNNPAGVVYSPEEIAQIAALA-RRYGATVIADQLYSRLRYAGASYTHLRAL-A  238 (406)
T ss_pred             CCCCCCCCHHHHHHHCCCCCEEEEECCCCCCCCHHCCHHHHHHHHHHH-HHCCEEEEEECCCCCCCCCCCCCCCHHHC-C
T ss_conf             634468999999974544876999889979857213399999999987-55795999964664545589887787663-5


Q ss_pred             CCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf             33322574146544322344544422110122687531001222332222222222223467643222222110000000
Q gi|254780602|r  226 SLYERTLVVNGVSKAYAMTGLRIGYAAGALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGPQDFVVNNRKIFEYRRDLC  305 (400)
Q Consensus       226 ~~~~~~i~~~S~SK~~~~~G~RiG~~v~~~~li~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~~  305 (400)
                      ...+++|+++|+||+|+|||||+||+++++++++++.++++....+++.+.|.++..++++.++|+++.+..++++|+.+
T Consensus       239 ~~~~~~I~~~s~SK~~~m~G~RlG~~~~~~~li~~~~~~~~~~~~~~~~~~Q~a~~~~l~~~~~~~~~~~~~~~~~R~~l  318 (406)
T PRK06207        239 VDPENVITIMGPSKTESLSGYRLGVAFGSPAIIARMEKLQAIVSLRAAGYCQAVLRTWFDEPPGWMEDRIAQHQAIRDDL  318 (406)
T ss_pred             CCCCCEEEEEECHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_conf             77676799751324431225624889789999999999998843684299999999999677999999999999999999


Q ss_pred             HHHHHCCCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCC--CCEEEEEEECCHH
Q ss_conf             24553047760330274089986264102332113322489899999999873979983502289--9728999629999
Q gi|254780602|r  306 VAQLQGVPGIRYMIPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGH--GPSIRISYAVSDA  383 (400)
Q Consensus       306 ~~~L~~~~g~~~~~p~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~--~~~iRis~~~~~e  383 (400)
                      .+.|+.++|+++..|+||||+|+++++.          ..++.+|++.|++++||+++||+.||.  .+||||||+.+++
T Consensus       319 ~~~l~~~~g~~~~~P~gg~yl~~~l~~~----------~~~~~~f~~~Ll~e~gVav~PG~~FG~~~~~~vRlsfa~~~e  388 (406)
T PRK06207        319 IRVLRGIDGVFARAPEAGSYLFPRLPKL----------AVGLADFVKILRLQAGVVVTPGTEFSPHTADSIRLNFSQDHA  388 (406)
T ss_pred             HHHHHCCCCCEECCCCCEEEEEEECCCC----------CCCHHHHHHHHHHHCCEEEECCHHHCCCCCCEEEEEECCCHH
T ss_conf             9998508995745899148996888888----------999999999999858999988656589998979999739899


Q ss_pred             HHHHHHHHHHHHHHHCC
Q ss_conf             99999999999998609
Q gi|254780602|r  384 ILEEACVRIKRFCHSLQ  400 (400)
Q Consensus       384 ~l~~al~rl~~~l~~l~  400 (400)
                      +|++|++||++|++++|
T Consensus       389 ~l~eal~RL~~~l~~yr  405 (406)
T PRK06207        389 AAVAAVERIAALIERYR  405 (406)
T ss_pred             HHHHHHHHHHHHHHHHC
T ss_conf             99999999999999855


No 36 
>PRK06836 aspartate aminotransferase; Provisional
Probab=100.00  E-value=0  Score=638.29  Aligned_cols=375  Identities=31%  Similarity=0.492  Sum_probs=332.9

Q ss_pred             HHHHHHHHHC--CCCHHHHHHHHHHHHHHC--CCCEEECCCCCCCCCCCHHHHHHHHHHHHCCC---CCCCCCCCCHHHH
Q ss_conf             3678898738--975899999999999986--99726656589749889999999999983887---5699877898999
Q gi|254780602|r    2 VFISNILRRV--QPSATLVAAQRVRDLRSK--GIDVLCLTAGEPDFDMPENVKYAVVRAMERGE---TKYTAVAGISPLR   74 (400)
Q Consensus         2 ~~~s~~~~~l--~~s~~~~~~~~~~~~~~~--g~~ii~l~~G~p~~~~p~~i~~a~~~al~~~~---~~Y~~~~G~~~lR   74 (400)
                      ||+|+|++.|  ++|.++++.+.+..++++  +.|||+|++|+|||+||++|++|+.++++++.   ++|+++.|.++||
T Consensus         1 ~~~~~~~~~~~~~~s~ir~~f~~~~~~~~~~G~~dVI~l~iG~Pdf~~P~~i~~a~~~a~~~~~~~~~~Y~~~~G~~eLR   80 (396)
T PRK06836          1 MMISRKIKGLLEKSSWIRKMFEEGARLKKEYGAENVFDFSLGNPDVEPPAAVKEALRELAEEEDPGMHGYMPNAGYPEVR   80 (396)
T ss_pred             CCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHH
T ss_conf             96358999761579889999999999998619998588689598999779999999999967998888779874769999


Q ss_pred             HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf             99999864210133332233233454333322222223322322223333232222222222222222222223222103
Q gi|254780602|r   75 EAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNFQVSP  154 (400)
Q Consensus        75 ~aia~~~~~~~g~~~~~e~I~it~G~~~~l~~~~~~~~~~Gd~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~~~~~~~d~  154 (400)
                      ++||+||++++|++++||||++|+|+++||+++++++++|||+|++++|+|+.|...++.+|++++.+++++++ |.+|+
T Consensus        81 eaIa~~~~~~~g~~~~pe~Iiit~Ga~~al~~~~~~ll~pGD~Vlvp~P~y~~y~~~~~~~g~~~v~v~~~~e~-~~~d~  159 (396)
T PRK06836         81 EAVAESLNARFGTPLTADHIVMTCGAAGALNVVLKALLNPGDEVIIFAPYFVEYKFYVDNHGGKLVVVPPDTED-FQPDL  159 (396)
T ss_pred             HHHHHHHHHHHCCCCCHHHEEECCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHCCCEEEEECCCCCC-CCCCH
T ss_conf             99999999986889958988985887999999999966999989982786506899999849979993167656-76799


Q ss_pred             HHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCC-----CCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             331000122122012113542100001233332111223333-----320111012211000001223322211123332
Q gi|254780602|r  155 EKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRN-----PHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYE  229 (400)
Q Consensus       155 ~~l~~~i~~~~k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~-----~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~  229 (400)
                      +++++++++++|++++||||||||.+++++++++|+++|.++     ||++||+||+|++++|++.+++++..    +.+
T Consensus       160 ~~l~~~i~~~tk~iilnsP~NPTG~v~s~e~l~~i~~l~~~~~~~~~h~i~vIsDEiY~~l~fd~~~~~s~~~----~~d  235 (396)
T PRK06836        160 DALEAAITPKTKAVIINSPNNPTGVIYSEETLKALGALLEEKSKEYGRPIYLISDEPYREIVYDGAEVPYIFK----YYK  235 (396)
T ss_pred             HHHHHHCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHCCCCCCCCCHHH----CCC
T ss_conf             9999736756629998689898998679999999999999865752886799805740753138987899577----478


Q ss_pred             EEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCC-------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             257414654432234454442211012268753100122-------2332222222222223467643222222110000
Q gi|254780602|r  230 RTLVVNGVSKAYAMTGLRIGYAAGALSLIKSMIVLQGQQ-------TSGACSIAQWAAVEALNGPQDFVVNNRKIFEYRR  302 (400)
Q Consensus       230 ~~i~~~S~SK~~~~~G~RiG~~v~~~~li~~l~~~~~~~-------~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r  302 (400)
                      ++|+++||||+|+|||||+||+++|+++.+.........       ..+++.+.|.++..+++...     ..+.|++||
T Consensus       236 ~~i~i~S~SK~~~m~G~RiG~iv~~~~i~~~~~~~~~~~~~~~~~~~v~a~~~~q~a~~~~~~~~~-----~~~~y~~rr  310 (396)
T PRK06836        236 NSIVVYSFSKSLSLPGERIGYIAVNPEMEDADDLMAALVFANRILGFVNAPSLMQRVVAKLQDATV-----DISIYKRRR  310 (396)
T ss_pred             EEEEEECCCCCCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCH-----HHHHHHHHH
T ss_conf             299996464220467311699986889999999999999876550556588999999999746726-----699999999


Q ss_pred             CCHHHHHHCCCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCCCCEEEEEEECCH
Q ss_conf             00024553047760330274089986264102332113322489899999999873979983502289972899962999
Q gi|254780602|r  303 DLCVAQLQGVPGIRYMIPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGHGPSIRISYAVSD  382 (400)
Q Consensus       303 ~~~~~~L~~~~g~~~~~p~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~iRis~~~~~  382 (400)
                      +.+.+.|+++ |+++..|+||||+|++.+            ..++.+|++.| .++||+++||+.||.+|||||||+.++
T Consensus       311 d~l~~~L~~~-g~~~~~P~Gafyl~~~~p------------~~d~~~f~~~l-~e~gV~vvPG~~Fg~~g~vRls~a~~~  376 (396)
T PRK06836        311 DLLYDALTEL-GFEFVKPQGAFYLFPKSP------------IEDDVAFVEKA-QKYNILLVPGSGFGAPGYFRLAYCVDT  376 (396)
T ss_pred             HHHHHHHHHC-CCEECCCCEEEEEEECCC------------CCCHHHHHHHH-HHCCEEEEECCCCCCCCCEEEEECCCH
T ss_conf             9999999984-986317881689986189------------99999999999-969999982743599980899970899


Q ss_pred             HHHHHHHHHHHHHHHHCC
Q ss_conf             999999999999998609
Q gi|254780602|r  383 AILEEACVRIKRFCHSLQ  400 (400)
Q Consensus       383 e~l~~al~rl~~~l~~l~  400 (400)
                      |+|++|++||++|++++|
T Consensus       377 e~i~eal~rl~~~~~e~k  394 (396)
T PRK06836        377 EQIERSLPAFEKLAKEYK  394 (396)
T ss_pred             HHHHHHHHHHHHHHHHHC
T ss_conf             999999999999999863


No 37 
>PRK06348 aspartate aminotransferase; Provisional
Probab=100.00  E-value=0  Score=637.14  Aligned_cols=376  Identities=31%  Similarity=0.525  Sum_probs=353.0

Q ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             67889873897589999999999998699726656589749889999999999983887569987789899999999864
Q gi|254780602|r    3 FISNILRRVQPSATLVAAQRVRDLRSKGIDVLCLTAGEPDFDMPENVKYAVVRAMERGETKYTAVAGISPLREAIVEKFR   82 (400)
Q Consensus         3 ~~s~~~~~l~~s~~~~~~~~~~~~~~~g~~ii~l~~G~p~~~~p~~i~~a~~~al~~~~~~Y~~~~G~~~lR~aia~~~~   82 (400)
                      ++|+|++.+++|.++++.+.++    +..|||+||+|+|||++|++|++++.++++++.++|+++.|.++||++||+|++
T Consensus         5 ~~~~r~~~~~~s~i~~~~~~a~----~~pDvI~l~~g~pdf~~p~~i~~a~~~~~~~~~~~Y~~~~G~~~lR~aia~~~~   80 (383)
T PRK06348          5 FIAKKYQQNENNLMSDIATLAK----KFPDIIDLSLGDPDLITDESIIQAAFEDAKKGHTRYTDSTGDKELIEEIINYYK   80 (383)
T ss_pred             HHHHHHHHCCCCHHHHHHHHHH----CCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf             7888860189989999999983----799928899968899988999999999986289988998689999999999999


Q ss_pred             HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCC
Q ss_conf             21013333223323345433332222222332232222333323222222222222222222222322210333100012
Q gi|254780602|r   83 RDNDLHYTSDQIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQAIT  162 (400)
Q Consensus        83 ~~~g~~~~~e~I~it~G~~~~l~~~~~~~~~~Gd~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~  162 (400)
                      +++|+++++++|++|+|+++||+++++++++|||+|++++|+|+.|...+..+|++++.+|+.++++|.+|+++++++++
T Consensus        81 ~~~g~~~~~~~I~it~G~~~al~~~~~~l~~pGD~Vlv~~P~Y~~y~~~~~~~g~~~v~~~~~~~~~~~~d~~~le~~i~  160 (383)
T PRK06348         81 KDYNLSFKENEIMAVVGACHGMYLALQSILDPGDEVIIHEPYFTPYKDQVEMVGGKPIIFETYEEDGFQINVDKLEALIT  160 (383)
T ss_pred             HHHCCCCCHHHEEEECCHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCEEECCCCCCCCCCCCHHHHHHHCC
T ss_conf             98789997674999489899999999996599998998069860269999980886253244566686579689898568


Q ss_pred             CCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCC
Q ss_conf             21220121135421000012333321112233333201110122110000012233222111233322574146544322
Q gi|254780602|r  163 PKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYA  242 (400)
Q Consensus       163 ~~~k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~  242 (400)
                      +++|++++||||||||.+|+++++++|+++|. +||++||+||+|++++|++ ++.|+.++ ++..+++|+++||||+|+
T Consensus       161 ~~tk~iil~~P~NPTG~v~~~e~l~~l~~la~-~~~i~visDEiY~~l~~~~-~~~p~~~~-~~~~~~~I~~~S~SK~~~  237 (383)
T PRK06348        161 SKTKAIILNSPNNPTGAVFSKETLEEIAKVAI-ENDLVIISDEVYDGFTFYE-DFCPMASL-AGMKERTITFGSFSKDFA  237 (383)
T ss_pred             CCCEEEEECCCCCCCCCCCCHHHHHHHHHHHH-HCCEEEEECCCHHHHCCCC-CCCCHHHC-CCCCCEEEEEECCHHHCC
T ss_conf             78729998999798888777789999997653-0686998514334420389-99883222-566651899921423115


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEECCC
Q ss_conf             34454442211012268753100122233222222222222346764322222211000000024553047760330274
Q gi|254780602|r  243 MTGLRIGYAAGALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQGVPGIRYMIPDG  322 (400)
Q Consensus       243 ~~G~RiG~~v~~~~li~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~~~~~L~~~~g~~~~~p~g  322 (400)
                      +||||+||+++|+.+++.+.++++....+++++.|.+++.+|+..++|+..+++.|++|++++.+.|++++++++.+|+|
T Consensus       238 ~~G~RiG~~i~p~~~~~~~~~~~~~~~~~~~~~~q~aa~~al~~~~~~~~~~~~~~~~r~~~~~~~l~~~~~~~~~~p~G  317 (383)
T PRK06348        238 MTGWRIGYVIAPDYIINTMKNINEGICFSAPTISQRAAIYALKHRDTIVPPIKEEFQKRMEYAYSRIESIPKLSLHPPKG  317 (383)
T ss_pred             CCCCEEEEEEECHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCE
T ss_conf             88860799982799999999997317666872999999999858699999999999999999999997489957617881


Q ss_pred             CEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCC--CCEEEEEEECCHHHHHHHHHHHHHH
Q ss_conf             089986264102332113322489899999999873979983502289--9728999629999999999999999
Q gi|254780602|r  323 AFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGH--GPSIRISYAVSDAILEEACVRIKRF  395 (400)
Q Consensus       323 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~--~~~iRis~~~~~e~l~~al~rl~~~  395 (400)
                      |||+|++++..          ..++.+|+++|++++||+++||+.||.  ++||||||+.++++|+||++||++.
T Consensus       318 ~~y~w~~~~~~----------~~~~~~~~~~ll~~~gV~v~PG~~Fg~~g~~~iRls~~~~~~~l~ea~~Rl~k~  382 (383)
T PRK06348        318 SIYAFINIKKT----------GLSSVEFCEYLLKEAHVLVIPGKAFGKSGEGYIRLACTVGLEELEEAFNRIEKM  382 (383)
T ss_pred             EEEEEEECCCC----------CCCHHHHHHHHHHHCCEEEECCHHHCCCCCCEEEEEEECCHHHHHHHHHHHHHC
T ss_conf             67997889999----------989999999999868999978545488999979999848999999999999741


No 38 
>PRK08362 consensus
Probab=100.00  E-value=0  Score=634.64  Aligned_cols=382  Identities=36%  Similarity=0.586  Sum_probs=356.3

Q ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             36788987389758999999999999869972665658974988999999999998388756998778989999999986
Q gi|254780602|r    2 VFISNILRRVQPSATLVAAQRVRDLRSKGIDVLCLTAGEPDFDMPENVKYAVVRAMERGETKYTAVAGISPLREAIVEKF   81 (400)
Q Consensus         2 ~~~s~~~~~l~~s~~~~~~~~~~~~~~~g~~ii~l~~G~p~~~~p~~i~~a~~~al~~~~~~Y~~~~G~~~lR~aia~~~   81 (400)
                      |.+|+|+..++||.++++.+.+.    ..+|||+||+|+|||++|+.|+++++++++.+.++|+++.|.++||++||+||
T Consensus         1 m~~s~r~~~~~~s~ir~~~~~~~----~~~dvI~l~~g~pd~~~p~~i~~a~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~   76 (389)
T PRK08362          1 MALSDRLDLVNPSEIRKLFDLAA----GMKDVISLGIGEPDFDTPQHIKEYAKEALDKGLTHYGPNIGLPELREAIAEKL   76 (389)
T ss_pred             CCHHHHHHCCCCCHHHHHHHHHH----CCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf             97616742399488999999973----89980899999799987899999999998558768899857099999999999


Q ss_pred             HHHCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCC
Q ss_conf             42101333322-33233454333322222223322322223333232222222222222222222223222103331000
Q gi|254780602|r   82 RRDNDLHYTSD-QIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQA  160 (400)
Q Consensus        82 ~~~~g~~~~~e-~I~it~G~~~~l~~~~~~~~~~Gd~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~  160 (400)
                      ++++|++++|+ +|++|+|+++|+.++++++++|||+|++++|+|+.|...+...|++++.+|+.++++|.+|+|++++.
T Consensus        77 ~~~~g~~~~p~~~i~it~G~~~al~~~~~~l~~pGD~Vlv~~P~Y~~y~~~~~~~g~~~v~vp~~~~~~~~~d~~~l~~~  156 (389)
T PRK08362         77 KKQNGIEADPKKEIMVLVGANQAFLMGLATFLKDGEEVLIPSPMFVSYAPAVILAGGKPVEVPTYEENEFRLNVDDLKKY  156 (389)
T ss_pred             HHHCCCCCCCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHH
T ss_conf             88409999976439981886999999999975899989981586542689999749989998545777887699999974


Q ss_pred             CCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCC
Q ss_conf             12212201211354210000123333211122333332011101221100000122332221112333225741465443
Q gi|254780602|r  161 ITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKA  240 (400)
Q Consensus       161 i~~~~k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~  240 (400)
                      +++++|++++||||||||.+||++++++|+++| ++||++||+||+|++++|++.++.|+.++. +..+++|+++||||+
T Consensus       157 i~~~~k~iil~~P~NPtG~v~s~~~l~~i~~~a-~~~~~~ii~DEiY~~l~~~~~~~~s~~~~~-~~~~~~i~~~S~SK~  234 (389)
T PRK08362        157 VTEKTRALIINSPNNPTGSVLTKKDLEEIADFA-VEHDLMVISDEVYEHFIYDGVKHYSIASLD-GMFERTITVNGFSKT  234 (389)
T ss_pred             CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHH-HHCCEEEEECCCHHHHCCCCCCCCCHHHCC-CCCCCEEEECCCHHH
T ss_conf             544682999848989847463199999999998-754957981464564101897776866604-544520230331010


Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCHHHHHHCCCCCEEE
Q ss_conf             2234454442211012268753100122233222222222222346764--32222221100000002455304776033
Q gi|254780602|r  241 YAMTGLRIGYAAGALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGPQD--FVVNNRKIFEYRRDLCVAQLQGVPGIRYM  318 (400)
Q Consensus       241 ~~~~G~RiG~~v~~~~li~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~--~~~~~~~~~~~~r~~~~~~L~~~~g~~~~  318 (400)
                      |++||||+||+++++++++++.+.+.+...+++++.|.++..+|.+.+.  +++++++.|++||+.+.+.|+++ |+.+.
T Consensus       235 ~~l~G~RiG~~i~~~~~i~~~~~~~~~~~~~~~~~~q~a~~~al~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~-g~~~~  313 (389)
T PRK08362        235 FAMTGWRLGFVAAPSWVIEKMVKFQMYNATCPVTFIQYAAAKALRDERSWKAVEEMRKEYDRRRNLVWKRLNEM-GLPTV  313 (389)
T ss_pred             CCCCCCCEEEEECCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCEE
T ss_conf             16876536999808999999999998604788659999999998597047999998788999999999988875-99555


Q ss_pred             ECCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCC--CCEEEEEEECCHHHHHHHHHHHHHHH
Q ss_conf             0274089986264102332113322489899999999873979983502289--97289996299999999999999999
Q gi|254780602|r  319 IPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGH--GPSIRISYAVSDAILEEACVRIKRFC  396 (400)
Q Consensus       319 ~p~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~--~~~iRis~~~~~e~l~~al~rl~~~l  396 (400)
                      .|+||||+|+++++.          ..++.+|+++|++++||+++||+.||.  ++|+||+|+.+++++++|++||++++
T Consensus       314 ~P~g~~~~w~~~~~~----------~~~~~~~~~~ll~e~gV~~~PG~~Fg~~~~~~~Rl~~a~~~e~l~ea~~RL~~~l  383 (389)
T PRK08362        314 KPKGAFYIFPRIRDT----------GLTSKEFSELMLKEAKVAVVPGSAFGKAGEGYIRISYATAYEKLEEAMDRMEKVL  383 (389)
T ss_pred             CCCEEEEEEEECCCC----------CCCHHHHHHHHHHHCCEEEECCHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHH
T ss_conf             788258994788888----------9899999999998299999867333889989799997199999999999999999


Q ss_pred             HHCC
Q ss_conf             8609
Q gi|254780602|r  397 HSLQ  400 (400)
Q Consensus       397 ~~l~  400 (400)
                      +..|
T Consensus       384 ~e~k  387 (389)
T PRK08362        384 KEKK  387 (389)
T ss_pred             HHCC
T ss_conf             8556


No 39 
>PRK05957 aspartate aminotransferase; Provisional
Probab=100.00  E-value=0  Score=631.11  Aligned_cols=380  Identities=27%  Similarity=0.435  Sum_probs=349.7

Q ss_pred             CHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHC-CCCCCCCCCCCHHHHHHHHH
Q ss_conf             93678898738975899999999999986997266565897498899999999999838-87569987789899999999
Q gi|254780602|r    1 MVFISNILRRVQPSATLVAAQRVRDLRSKGIDVLCLTAGEPDFDMPENVKYAVVRAMER-GETKYTAVAGISPLREAIVE   79 (400)
Q Consensus         1 m~~~s~~~~~l~~s~~~~~~~~~~~~~~~g~~ii~l~~G~p~~~~p~~i~~a~~~al~~-~~~~Y~~~~G~~~lR~aia~   79 (400)
                      |..+++|+.++++|.+.++.+    +.++|++||+|++|+|||+||+++++|+.+++.+ +.++|+++.|+++||++||+
T Consensus         1 mp~~a~r~~~~~~~~~~~~~~----l~~~~~~iI~l~~G~pd~~~p~~v~~a~~~al~~~~~~~Y~~~~G~~~LR~aia~   76 (389)
T PRK05957          1 MPQPTSRMDAVQSPIIPVVGQ----LIRENPGTISLGQGVVSYPPPPEAIEALNNFLANPENHLYQSVQGIPPLLEAITQ   76 (389)
T ss_pred             CCCHHHHHHCCCCCHHHHHHH----HHHCCCCCEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH
T ss_conf             997576640489989999999----9975999388999899999889999999999828678868997574999999999


Q ss_pred             HHHHHCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf             86421013333223-32334543333222222233223222233332322222222222222222222232221033310
Q gi|254780602|r   80 KFRRDNDLHYTSDQ-IIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNFQVSPEKLE  158 (400)
Q Consensus        80 ~~~~~~g~~~~~e~-I~it~G~~~~l~~~~~~~~~~Gd~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~  158 (400)
                      ||++++|+++++|+ |++|+|+++|+.++++++++|||+|++++|+|+.|...++.+|++++.+|++  ++|.+|+|.++
T Consensus        77 ~~~~~~g~~~~~~~~I~vt~Ga~~al~~~~~al~~pGD~Vlv~~P~Y~~~~~~~~~~g~~~v~vp~d--~~~~~~~~~l~  154 (389)
T PRK05957         77 KLQADNGIEINNENAIVVTAGSNMAFMNAILAITDPGDEIILNTPYYFNHEMAITMAGCQPVLVPTD--ENYQLRPEAIE  154 (389)
T ss_pred             HHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHCCCCEEEEECC--CCCCCCHHHHH
T ss_conf             9999968998989889988788999999999975999989977887766899999749935886579--98897999999


Q ss_pred             CCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCC
Q ss_conf             00122122012113542100001233332111223333320111012211000001223322211123332257414654
Q gi|254780602|r  159 QAITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVS  238 (400)
Q Consensus       159 ~~i~~~~k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~S  238 (400)
                      +++++++|++++||||||||.+||.+++++|+++| ++||++||+||+|+++.|++.++.+..++. +..+++|+++|||
T Consensus       155 ~~i~~~~k~iil~~P~NPTG~v~s~~~l~~l~~la-~~~~~~ii~DE~Y~~l~~~~~~~~s~~~~~-~~~~~vI~i~S~S  232 (389)
T PRK05957        155 AAITPKTRAIVTISPNNPTGVVYPEALLRAVNQIC-AEHGIYHISDEAYEYFTYDGVKHFSPGSIP-GSGNHTISLYSLS  232 (389)
T ss_pred             HHCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHH-CCCCCEEEECCCCCCCCCCCCCCCCHHHCC-CCCCCCCCCCCCC
T ss_conf             84510262786189989989887677899999876-067818998984321345886667765445-6345430134443


Q ss_pred             CCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCC-EE
Q ss_conf             43223445444221101226875310012223322222222222234676432222221100000002455304776-03
Q gi|254780602|r  239 KAYAMTGLRIGYAAGALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQGVPGI-RY  317 (400)
Q Consensus       239 K~~~~~G~RiG~~v~~~~li~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~~~~~L~~~~g~-~~  317 (400)
                      |+|++||||+||+++|+++++.+.+++++...+++.+.|.+++.+|+..++|+++.+..++++|+.+.+.|++++++ .+
T Consensus       233 K~~~~~G~RvG~~v~~~~l~~~~~~~~~~~~~~~~~~~Q~aa~~al~~~~~~~~~~~~~~~~~r~~~~~~l~~~~~~~~~  312 (389)
T PRK05957        233 KAYGFASWRIGYMVIPIHLLEAIKKIQDTILICPPVVSQYAALGALQVGKSYCQQHLPEIAQVRQILLKSLAQLQDWCFL  312 (389)
T ss_pred             CCCCCCCCCEEEEEECHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf             12446564348898389999999999854567853999999999997799999999999999999999999856897266


Q ss_pred             EECCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCCC--CEEEEEEE-CCHHHHHHHHHHHHH
Q ss_conf             302740899862641023321133224898999999998739799835022899--72899962-999999999999999
Q gi|254780602|r  318 MIPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGHG--PSIRISYA-VSDAILEEACVRIKR  394 (400)
Q Consensus       318 ~~p~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~--~~iRis~~-~~~e~l~~al~rl~~  394 (400)
                      .+|+||||+|++++.           ..++.+|+.+|++++||+++||+.||.+  +|+||||+ .++|+|++|++||++
T Consensus       313 ~~p~G~f~~~~~~~~-----------~~~~~~~~~~ll~e~gV~v~PG~~Fg~~~~~~~Rlsf~~~~~e~l~eg~~RL~~  381 (389)
T PRK05957        313 HPANGAFYCFLKVNT-----------DLNDFELVKQLIRDYRVAVIPGSTFGMKNGCYLRIAYGALQKATAKEGIERLVQ  381 (389)
T ss_pred             CCCCEEEEEEEECCC-----------CCCHHHHHHHHHHHCCEEEECCHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHH
T ss_conf             079857999897898-----------969999999999979999978731088999989998542999999999999999


Q ss_pred             HHHHC
Q ss_conf             99860
Q gi|254780602|r  395 FCHSL  399 (400)
Q Consensus       395 ~l~~l  399 (400)
                      +|++|
T Consensus       382 alk~~  386 (389)
T PRK05957        382 GLKTI  386 (389)
T ss_pred             HHHHH
T ss_conf             99999


No 40 
>PRK09082 putative aminotransferase; Validated
Probab=100.00  E-value=0  Score=632.44  Aligned_cols=373  Identities=29%  Similarity=0.465  Sum_probs=348.0

Q ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             78898738975899999999999986997266565897498899999999999838875699877898999999998642
Q gi|254780602|r    4 ISNILRRVQPSATLVAAQRVRDLRSKGIDVLCLTAGEPDFDMPENVKYAVVRAMERGETKYTAVAGISPLREAIVEKFRR   83 (400)
Q Consensus         4 ~s~~~~~l~~s~~~~~~~~~~~~~~~g~~ii~l~~G~p~~~~p~~i~~a~~~al~~~~~~Y~~~~G~~~lR~aia~~~~~   83 (400)
                      .|+|+.++++|.+.++.+.|++     +++|+|++|+|||+||+++++|++++++++.++|++++|+++||++||++|++
T Consensus         8 ~~~r~~~~~~~~~~~~~~la~~-----~~~I~L~~G~Pd~~~P~~i~~a~~~a~~~~~~~Y~~~~G~~~LReaiA~~~~~   82 (386)
T PRK09082          8 PQSKLPNVGTTIFTVMSALAAE-----HGAINLSQGFPDFDGPPRLVEALAYAMAAGHNQYPPMTGVAALREAIADKTAR   82 (386)
T ss_pred             HHHHCCCCCCCHHHHHHHHHHC-----CCCEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf             3776579999799999999705-----99887279899998789999999999965999898987719999999999999


Q ss_pred             HCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCC
Q ss_conf             101333322-3323345433332222222332232222333323222222222222222222222322210333100012
Q gi|254780602|r   84 DNDLHYTSD-QIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQAIT  162 (400)
Q Consensus        84 ~~g~~~~~e-~I~it~G~~~~l~~~~~~~~~~Gd~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~  162 (400)
                      ++|++++|| +|++|+|+++||+++++++++|||+|++++|+|+.|...++.+|++++++|++++ +|.+|+++++++++
T Consensus        83 ~~g~~~~p~~eI~vT~Ga~~al~~~~~al~~pGD~Vlv~~P~Y~~y~~~~~~~G~~~v~vpl~~~-~~~~d~~~l~~~i~  161 (386)
T PRK09082         83 LYGRRYDADSEITVTAGATEALFAAILALVRPGDEVIVFDPSYDSYAPAIELAGGRAVRVALQPP-DFRVDWQRFAAAIT  161 (386)
T ss_pred             HHCCCCCCCCCEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCEEEEECCCCC-CCCCCHHHHHHHCC
T ss_conf             96899898883898778899999999997599998999268628799999984998999267798-88879999996367


Q ss_pred             CCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCC
Q ss_conf             21220121135421000012333321112233333201110122110000012233222111233322574146544322
Q gi|254780602|r  163 PKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYA  242 (400)
Q Consensus       163 ~~~k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~  242 (400)
                      +++|++++||||||||.++|.+++++|+++|. ++|++||+||+|++++|++.++.|+++. ++..+++|+++||||+|+
T Consensus       162 ~~tk~iil~sP~NPTG~v~s~~~l~~l~~la~-~~~i~ii~DE~Y~~l~~d~~~~~s~~~~-~~~~~~~i~i~S~SK~~~  239 (386)
T PRK09082        162 PRTRLIILNTPHNPSGTVWSAADMDALAQLIA-GTDILVLSDEVYEHIVFDGQGHASVLRH-PELRERAFVVSSFGKTYH  239 (386)
T ss_pred             CCCEEEEECCCCCCCCCCCCHHHHHHHHHHHH-HCCCEEEECCCHHHHCCCCCCCCCHHHC-CCCCCCCCCCCCCCCCCC
T ss_conf             57649997999697360136355999999999-8194797112223311389888684448-653345444324442457


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEECCC
Q ss_conf             34454442211012268753100122233222222222222346764322222211000000024553047760330274
Q gi|254780602|r  243 MTGLRIGYAAGALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQGVPGIRYMIPDG  322 (400)
Q Consensus       243 ~~G~RiG~~v~~~~li~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~~~~~L~~~~g~~~~~p~g  322 (400)
                      +||||+||+++|+++++++.++++....+++++.|.++..+|...++|+.++++.|++||+.+.+.|++. ++++.+|+|
T Consensus       240 ~~G~RiG~~v~p~~l~~~~~~~~~~~~~~~~~~~Q~a~a~~l~~~~~~~~~~~~~y~~rrd~l~~~L~~~-~~~~~~~~G  318 (386)
T PRK09082        240 VTGWKVGYCVAPAALSAEFRKVHQYNTFTVNTPAQLALADYLRAEPEHYLELPAFYQAKRDRFRAALANS-RFKLLPCEG  318 (386)
T ss_pred             CCCCCEEEEEECHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHC-CCEEECCCC
T ss_conf             8751059998789999999999986457876899999999996695899999999999999999999867-988847992


Q ss_pred             CEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCCC----CEEEEEEECCHHHHHHHHHHHHH
Q ss_conf             0899862641023321133224898999999998739799835022899----72899962999999999999999
Q gi|254780602|r  323 AFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGHG----PSIRISYAVSDAILEEACVRIKR  394 (400)
Q Consensus       323 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~----~~iRis~~~~~e~l~~al~rl~~  394 (400)
                      |||+|++++...         ..++.+|+.+|++++||+++||+.|+.+    +|||+||+.++++|++|++||++
T Consensus       319 ~~f~~~~~~~~~---------~~~~~~f~~~l~~e~gV~v~PG~~F~~~~~~~~~iRl~fa~~~e~l~ea~~RLak  385 (386)
T PRK09082        319 TYFQLVDYSAIS---------DLNDVEFCQWLTREHGVAAIPLSVFYADPFPHRLVRFCFAKQEETLDAAAERLCQ  385 (386)
T ss_pred             EEEEEEECCCCC---------CCCHHHHHHHHHHHCCEEEECCHHHCCCCCCCCEEEEEECCCHHHHHHHHHHHHH
T ss_conf             599988603489---------9899999999998589999827110579999997999968999999999999842


No 41 
>PRK07777 aminotransferase; Validated
Probab=100.00  E-value=0  Score=631.19  Aligned_cols=377  Identities=29%  Similarity=0.456  Sum_probs=343.8

Q ss_pred             HHHCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf             87389758999999999999869972665658974988999999999998388756998778989999999986421013
Q gi|254780602|r    8 LRRVQPSATLVAAQRVRDLRSKGIDVLCLTAGEPDFDMPENVKYAVVRAMERGETKYTAVAGISPLREAIVEKFRRDNDL   87 (400)
Q Consensus         8 ~~~l~~s~~~~~~~~~~~~~~~g~~ii~l~~G~p~~~~p~~i~~a~~~al~~~~~~Y~~~~G~~~lR~aia~~~~~~~g~   87 (400)
                      +.+|+|+.+..+.+..+  .++++++|+|++|+|||++|+++++++.++++++.++|+++.|.++||++||+||++++|+
T Consensus         3 ~~rl~~~~~~~~~~~~~--~a~~~~~I~l~~G~Pd~~~p~~i~~a~~~a~~~~~~~Y~~~~G~~~LReaia~~~~~~~g~   80 (386)
T PRK07777          3 VSRLRPFGTTIFAEMSA--LAVRTGAVNLGQGFPDEDGPPEMLEAAQEAIAGGVNQYPPGPGIAPLRAAIAAQRRRRYGL   80 (386)
T ss_pred             CCCCCCCCCCHHHHHHH--HHCCCCCEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCC
T ss_conf             03138998749999999--8579998894997899856899999999998628997799876499999999999998199


Q ss_pred             CCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCHHHHHHCCCCCCC
Q ss_conf             33322-332334543333222222233223222233332322222222222222222222-2322210333100012212
Q gi|254780602|r   88 HYTSD-QIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDMVALCGGIPVFVDTQQ-DDNFQVSPEKLEQAITPKT  165 (400)
Q Consensus        88 ~~~~e-~I~it~G~~~~l~~~~~~~~~~Gd~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~-~~~~~~d~~~l~~~i~~~~  165 (400)
                      +++|| +|++|+|+++||+++++++++|||+|++++|+|+.|...+.++|++++++|+++ +++|.+|++++++++++++
T Consensus        81 ~~~pe~eI~vt~Ga~~al~~~~~~l~~pGD~Vlv~~P~y~~y~~~~~~~g~~~v~vpl~~~~~~~~~d~~~l~~~~~~~t  160 (386)
T PRK07777         81 EYDPDTEVLVTVGATEAIAAAVLGLVEPGDEVLLIEPYYDSYAAVIAMAGAHRVAVPLVPDGRGFALDVDALRAAVTPRT  160 (386)
T ss_pred             CCCCCCEEEECCCHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHCCEEEECCCCCCCCCCCCCHHHHHHHCCCCC
T ss_conf             99998809987787999999999964899877634997787699999838925613434778884669699997468777


Q ss_pred             CCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCC
Q ss_conf             20121135421000012333321112233333201110122110000012233222111233322574146544322344
Q gi|254780602|r  166 KWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTG  245 (400)
Q Consensus       166 k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~~~G  245 (400)
                      |++++||||||||.++|++++++|+++| +++|++||+||+|+++.|++.+++|+.++ ++..+++|+++||||+|++||
T Consensus       161 k~iil~~P~NPTG~v~s~e~l~~l~~la-~~~~i~ii~DE~Y~~l~f~~~~~~~~~~~-~~~~~~~i~i~S~SK~~~~~G  238 (386)
T PRK07777        161 RALIVNSPHNPTGTVLSAAELAAIAELA-VEHDLLVITDEVYEHLVFDGARHLPLATL-PGMAERTVTISSAAKTFNVTG  238 (386)
T ss_pred             EEEEECCCCCCCCCCCCHHHHHHHHHHH-HHCCCEEECCCCHHHHCCCCCCCCCHHHC-CCCCCCCEEECCCCCCCCCCC
T ss_conf             6999799969888488899999999998-64297886575377522688777736546-786576024316667667766


Q ss_pred             CCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEECCCCEE
Q ss_conf             54442211012268753100122233222222222222346764322222211000000024553047760330274089
Q gi|254780602|r  246 LRIGYAAGALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQGVPGIRYMIPDGAFY  325 (400)
Q Consensus       246 ~RiG~~v~~~~li~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~~~~~L~~~~g~~~~~p~g~~y  325 (400)
                      ||+||+++|+++++.+.+.+++...+.+++.|.+++.+|+..++|+.++++.|++||+.+.+.|+++ |+++.+|+||||
T Consensus       239 ~R~G~~v~~~~li~~~~~~~~~~~~~~~~~~Q~a~~~al~~~~~~~~~~~~~~~~rrd~~~~~L~~~-g~~~~~p~G~~f  317 (386)
T PRK07777        239 WKIGWACGPAPLIAAVRAAKQYLTYVGGAPFQPAVAHALDHEDAWVAALRDSLQAKRDRLAAGLAEA-GFAVHDSAGTYF  317 (386)
T ss_pred             CCEEEEEECHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHC-CCEEECCCEEEE
T ss_conf             2259998589999999999986367586589999999986875999999999999999999999976-988717982689


Q ss_pred             EEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCCC-----CEEEEEEECCHHHHHHHHHHHHHHHHH
Q ss_conf             9862641023321133224898999999998739799835022899-----728999629999999999999999986
Q gi|254780602|r  326 LYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGHG-----PSIRISYAVSDAILEEACVRIKRFCHS  398 (400)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~-----~~iRis~~~~~e~l~~al~rl~~~l~~  398 (400)
                      +|++++...         ..|+.+|+.+|++++||+++||+.||.+     +|||+||+.++|+|+||++||+++++.
T Consensus       318 ~~~~~~~~~---------~~d~~~f~~~L~~~~gV~v~PG~~F~~~~~~g~~~vRlsf~~~~e~l~ea~~RL~~~~rR  386 (386)
T PRK07777        318 LCADPRPLG---------YDDGTAFCRALPERVGVAAIPMSAFCDPADAWNHLVRFAFCKRDDTLDEAIRRLRALRRR  386 (386)
T ss_pred             EEEECCCCC---------CCCHHHHHHHHHHHCCEEEECCHHHCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHCC
T ss_conf             988666689---------999999999999868999988744288987789979999689999999999999998649


No 42 
>PRK07550 hypothetical protein; Provisional
Probab=100.00  E-value=0  Score=630.84  Aligned_cols=380  Identities=23%  Similarity=0.375  Sum_probs=351.5

Q ss_pred             HHHHHHHCCCCHHHHHHHHHHHHH-HCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCC-CCCCCCCCCCHHHHHHHHHHH
Q ss_conf             788987389758999999999999-869972665658974988999999999998388-756998778989999999986
Q gi|254780602|r    4 ISNILRRVQPSATLVAAQRVRDLR-SKGIDVLCLTAGEPDFDMPENVKYAVVRAMERG-ETKYTAVAGISPLREAIVEKF   81 (400)
Q Consensus         4 ~s~~~~~l~~s~~~~~~~~~~~~~-~~g~~ii~l~~G~p~~~~p~~i~~a~~~al~~~-~~~Y~~~~G~~~lR~aia~~~   81 (400)
                      +|+++++++|+++.++..+.+++. ++|+|||+|++|+|||+||++|++|+.+++.++ .++|+++.|+++||++||+||
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~vI~L~~G~Pdf~~p~~i~~a~~~a~~~~~~~~Y~~~~G~~~LR~aia~~~   81 (387)
T PRK07550          2 LNPLVAATFPPPIMEVRRWLAGYSFPAGRPLIDLSQAVPVYPPPPELRRALAEAAGDPAAHLYGPVEGLPELREAYAAQY   81 (387)
T ss_pred             CCCCHHHCCCCCHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf             88525345999499999997478766999715898988989878999999999966988888989857199999999999


Q ss_pred             HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCC
Q ss_conf             42101333322332334543333222222233223222233332322222222222222222222232221033310001
Q gi|254780602|r   82 RRDNDLHYTSDQIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQAI  161 (400)
Q Consensus        82 ~~~~g~~~~~e~I~it~G~~~~l~~~~~~~~~~Gd~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i  161 (400)
                      ++++|+++++|+|++|+|++++|.++++++++|||+|++++|+|+.|...++.+|++++.+|++++++|.+|++++++++
T Consensus        82 ~~~~g~~~~pe~I~it~G~~~al~~~~~al~~pGD~Vli~~P~Y~~y~~~~~~~G~~~~~vp~~~~~~~~~d~~~le~~~  161 (387)
T PRK07550         82 SRLYGAAINPGQVAITSGCNQAFWAAMVTLAGAGDEVILPTPWYFNHKMWLDMLGIRAVLVPLDTGPGLLPDPEAAAALI  161 (387)
T ss_pred             HHHHCCCCCHHHEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHCCCEEEECCCCCCCCCCCCHHHHHHHC
T ss_conf             99868899679889876789999999999718989899827967537999997699897347775679877999999755


Q ss_pred             CCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCC
Q ss_conf             22122012113542100001233332111223333320111012211000001223322211123332257414654432
Q gi|254780602|r  162 TPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAY  241 (400)
Q Consensus       162 ~~~~k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~  241 (400)
                      ++++|++++||||||||.+||++++++|+++| ++||++||+||+|+++.+++.++.++.+ .++..+++|+++||||+|
T Consensus       162 ~~~tk~iil~~P~NPtG~v~s~e~l~~l~~la-~~~~~~iI~DEiY~~~~~~~~~~~~~~~-~~~~~~~vI~i~S~SK~~  239 (387)
T PRK07550        162 TPRTRAIVLVTPNNPTGVVYPPELLHELYDLA-RRRGLALILDETYRDFDSRGGAPHDLFA-DPDWGDTLVHLYSFSKAY  239 (387)
T ss_pred             CCCCCEEECCCCCCCCCCCCCHHHHHHHHHHC-CCEEEEEEECCCHHHHHCCCCCCCCHHH-CCCCCCEEEEECCCCCCC
T ss_conf             65783770389969988510779853465430-3315899941757875338877766765-336675599974676445


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEECC
Q ss_conf             23445444221101226875310012223322222222222234676432222221100000002455304776033027
Q gi|254780602|r  242 AMTGLRIGYAAGALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQGVPGIRYMIPD  321 (400)
Q Consensus       242 ~~~G~RiG~~v~~~~li~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~~~~~L~~~~g~~~~~p~  321 (400)
                      ++||||+||+++++++++++.+++++...|++.+.|.+++.+|++.++|+.+.+..+.+||+.+.+.|++++++.+ .|+
T Consensus       240 ~~~G~RiG~i~~~~~~i~~~~~~~~~~~~~~~~~~q~aa~~al~~~~~~~~~~~~~~~~rr~~l~~~l~~~~~~~~-~~~  318 (387)
T PRK07550        240 RLTGHRVGALAASPARLAEIEKFLDTMAICAPRIGQIAVLWGIRNLADWVAGNRAEILRRRDALRAGFSRLPGWEL-LAS  318 (387)
T ss_pred             CCCCCEEEEEEECHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE-CCC
T ss_conf             6754217999839999999999997603678779999999998630999999999999999999998864689654-788


Q ss_pred             CCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCC--CCEEEEEEE-CCHHHHHHHHHHHHHHH
Q ss_conf             4089986264102332113322489899999999873979983502289--972899962-99999999999999999
Q gi|254780602|r  322 GAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGH--GPSIRISYA-VSDAILEEACVRIKRFC  396 (400)
Q Consensus       322 g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~--~~~iRis~~-~~~e~l~~al~rl~~~l  396 (400)
                      ||||+|++++..          ..++.+|+++|++++||+++||+.||.  .+||||||+ .++++|+||++||++|.
T Consensus       319 G~~f~w~~~~~~----------~~~~~~~~~~ll~e~gV~v~PG~~Fg~~g~~~vRlsfa~~~~~~i~ea~~RL~~fa  386 (387)
T PRK07550        319 GAYFAYVRHPFP----------DASSDEVARRLAKEAGILCLPGTMFGPGGERYLRLAFANIDVAGIAELVERLRGFA  386 (387)
T ss_pred             CEEEEEEECCCC----------CCCHHHHHHHHHHHCCEEEECCHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHC
T ss_conf             347998837889----------98999999999986999997875338899897999946799999999999998657


No 43 
>PRK09147 aminotransferase; Provisional
Probab=100.00  E-value=0  Score=627.47  Aligned_cols=378  Identities=24%  Similarity=0.404  Sum_probs=339.8

Q ss_pred             HHHHHHHCCCCHHHHHHHHHHHHH-HCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             788987389758999999999999-8699726656589749889999999999983887569987789899999999864
Q gi|254780602|r    4 ISNILRRVQPSATLVAAQRVRDLR-SKGIDVLCLTAGEPDFDMPENVKYAVVRAMERGETKYTAVAGISPLREAIVEKFR   82 (400)
Q Consensus         4 ~s~~~~~l~~s~~~~~~~~~~~~~-~~g~~ii~l~~G~p~~~~p~~i~~a~~~al~~~~~~Y~~~~G~~~lR~aia~~~~   82 (400)
                      +|.|+++++||++.++.+...+++ +.|++||+|++|+|||++|+.|++|+.+++ ++.++|+++.|.++||++||+||+
T Consensus         1 ~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~L~iG~Pd~~~P~~v~~a~~~a~-~~~~~Y~~~~G~~~LReaia~~~~   79 (397)
T PRK09147          1 MNPRLDRLQPYPFEKLRALFAGVTPPADLPPISLSIGEPKHPTPAFVRDALAANL-DGLAVYPTTAGLPALRQAIARWLE   79 (397)
T ss_pred             CCCCHHHCCCCHHHHHHHHHHHCHHCCCCCEEECCCCCCCCCCCHHHHHHHHHHH-CCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf             9955634899889999999850401389985876488899997899999999986-287789999784999999999999


Q ss_pred             HHCCC-CCCCC-CCCCCCCCCCCCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf             21013-33322-3323345433332222222332232---2223333232222222222222222222223222103331
Q gi|254780602|r   83 RDNDL-HYTSD-QIIVGTGAKHVIFNALMATVNMGDE---VLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNFQVSPEKL  157 (400)
Q Consensus        83 ~~~g~-~~~~e-~I~it~G~~~~l~~~~~~~~~~Gd~---Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~~~~~~~d~~~l  157 (400)
                      +++|+ .++++ +|++|+|++++|+++++++++|||+   |++++|+|+.|...+.++|++++.+|++++++|.+|+++|
T Consensus        80 ~~~g~~~~~~~~~v~vt~Ga~~al~~~~~a~l~~gd~g~~Vl~~~P~Y~~y~~~~~~~G~~~v~vp~~~e~~~~~d~~~l  159 (397)
T PRK09147         80 RRYGLPAVDPATQVLPVNGSREALFAFAQTVIDRSDPGPLVVCPNPFYQIYEGAALLAGAEPYFLNCDPANGFAPDFDAV  159 (397)
T ss_pred             HHCCCCCCCCCCEEEECCCCHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCHHHHHHCCCEEEEECCCCCCCCCCCHHHH
T ss_conf             87099867857469988882899999998605888988889968887877499999769868992357122777697898


Q ss_pred             HCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC-CCC----CCCCCCCCEEE
Q ss_conf             0001221220121135421000012333321112233333201110122110000012233-222----11123332257
Q gi|254780602|r  158 EQAITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFS-NIV----NVEPSLYERTL  232 (400)
Q Consensus       158 ~~~i~~~~k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~-s~~----~~~~~~~~~~i  232 (400)
                      ++++++|||+|++||||||||.+||++++++|+++| ++||++||+||+|++++|++..++ +..    .+..+.++|+|
T Consensus       160 ~~~i~~~tk~iil~sP~NPTG~v~s~e~l~~l~~la-~~~~i~iisDEiY~~l~~d~~~~p~~~~~~~~~~~~~~~~~~I  238 (397)
T PRK09147        160 PAEVWARTQLLFVCSPGNPTGAVLPLDDWKKLFALS-DRYGFVIASDECYSEIYFDEAAPPLGLLEAAAELGRDDFKRLV  238 (397)
T ss_pred             HHHHHHCCCEEEECCCCCCCCCCCCHHHHHHHHHHH-CCCEEEEEECCCCCCCEECCCCCCHHHHHHHHHHCCCCCCCEE
T ss_conf             987311274898689989889988889999999963-2472899982686521547987981577777762656568689


Q ss_pred             EECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCC
Q ss_conf             41465443223445444221101226875310012223322222222222234676432222221100000002455304
Q gi|254780602|r  233 VVNGVSKAYAMTGLRIGYAAGALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQGV  312 (400)
Q Consensus       233 ~~~S~SK~~~~~G~RiG~~v~~~~li~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~~~~~L~~~  312 (400)
                      +++|+||+|++||||+||+++++++++++.+++++..++++.+.|.++++++. .+.++.++++.|++|++.+.+.|++.
T Consensus       239 ~~~S~SK~~~~~G~RiG~i~~~~~li~~~~~~~~~~~~~~~~~~q~A~~aa~~-~~~~~~~~r~~~~~r~~~~~~~l~~~  317 (397)
T PRK09147        239 VFHSLSKRSNVPGLRSGFVAGDAALLKKFLLYRTYHGCAMPPQVQLASIAAWN-DEAHVRENRALYREKFDAVTPILAPV  317 (397)
T ss_pred             EECCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             98157210367665258886899999999997354222578999999999856-83679999999999999999987337


Q ss_pred             CCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCC--------CCEEEEEEECCHHH
Q ss_conf             7760330274089986264102332113322489899999999873979983502289--------97289996299999
Q gi|254780602|r  313 PGIRYMIPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGH--------GPSIRISYAVSDAI  384 (400)
Q Consensus       313 ~g~~~~~p~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~--------~~~iRis~~~~~e~  384 (400)
                        +.+..|+||||+|+++++            .+|.+|+.+|++++||+++||+.||.        .+||||+|+.++++
T Consensus       318 --~~~~~P~gg~ylw~~~~~------------~~~~~f~~~Ll~~~gV~v~PGs~F~~~~~g~~~G~g~vRl~~a~~~e~  383 (397)
T PRK09147        318 --LDVQLPDAGFYLWAKVPG------------GDDTAFARRLYADYNVTVLPGSYLAREAHGVNPGAGRVRIALVAPLAE  383 (397)
T ss_pred             --CCCCCCCEEEEEEEECCC------------CCHHHHHHHHHHHCCEEEECCCCCCCCCCCCCCCCCEEEEEECCCHHH
T ss_conf             --987788973599886899------------998999999999689999868100423347888998899997498999


Q ss_pred             HHHHHHHHHHHHHH
Q ss_conf             99999999999986
Q gi|254780602|r  385 LEEACVRIKRFCHS  398 (400)
Q Consensus       385 l~~al~rl~~~l~~  398 (400)
                      |+||++||++||++
T Consensus       384 l~eal~Rl~~~l~s  397 (397)
T PRK09147        384 CVEAAERIVDFLRS  397 (397)
T ss_pred             HHHHHHHHHHHHCC
T ss_conf             99999999999729


No 44 
>PRK07682 hypothetical protein; Validated
Probab=100.00  E-value=0  Score=625.88  Aligned_cols=374  Identities=37%  Similarity=0.592  Sum_probs=349.7

Q ss_pred             HHCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf             73897589999999999998699726656589749889999999999983887569987789899999999864210133
Q gi|254780602|r    9 RRVQPSATLVAAQRVRDLRSKGIDVLCLTAGEPDFDMPENVKYAVVRAMERGETKYTAVAGISPLREAIVEKFRRDNDLH   88 (400)
Q Consensus         9 ~~l~~s~~~~~~~~~~~~~~~g~~ii~l~~G~p~~~~p~~i~~a~~~al~~~~~~Y~~~~G~~~lR~aia~~~~~~~g~~   88 (400)
                      +.|+||.++++.+.++    +++|||+||+|+|||++|+.|++|+.++++++.++|+++.|+++||++|++|+++++|++
T Consensus         2 ~~~~~S~ir~~~~~~~----~~~dvi~l~vgdpdf~~p~~i~ea~~~~~~~g~~~Y~~~~G~~~lreaia~~~~~r~g~~   77 (378)
T PRK07682          2 ESLQPSGIRKFFDLAA----NMEGVISLGVGEPDFVTPWNVREASIRSLEQGYTSYTANAGLLELRQEIAKYLKKRFAVS   77 (378)
T ss_pred             CCCCCCHHHHHHHHHH----CCCCCEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf             9999668999999872----899828899998999878999999999985699998999888999999999999984899


Q ss_pred             CCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCC
Q ss_conf             3322-332334543333222222233223222233332322222222222222222222232221033310001221220
Q gi|254780602|r   89 YTSD-QIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQAITPKTKW  167 (400)
Q Consensus        89 ~~~e-~I~it~G~~~~l~~~~~~~~~~Gd~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~k~  167 (400)
                      ++|+ +|++|+|+++|++++++++++|||+|++++|+|+.|...+...|++++++++..+++|.+|++++++++++++|+
T Consensus        78 ~~p~~~i~vt~G~~~al~~~~~~l~~pGD~Vlv~~P~Y~~y~~~~~~~g~~~v~~~~~~~~~~~~d~~~le~~~~~~~k~  157 (378)
T PRK07682         78 YDPNDEIIVTVGASQALDVAMRAIINPGDEVLIVEPSFVSYAPLVTLAGGVPVPVATSLENEFKVQPAQIEAAITAKTKA  157 (378)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCHHHHHHHCCCCCCE
T ss_conf             99777599907859999999999659999899925850527999998188569940265458637999999736526838


Q ss_pred             EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCC
Q ss_conf             12113542100001233332111223333320111012211000001223322211123332257414654432234454
Q gi|254780602|r  168 LFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTGLR  247 (400)
Q Consensus       168 i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~~~G~R  247 (400)
                      +++||||||||.+||++++++|+++|. +||++||+||+|++++|++ +++++.++ ++..+++|+++||||+|++||||
T Consensus       158 iil~~P~NPtG~v~s~~el~~l~~la~-~~~i~iisDEiY~~l~~~~-~~~~~~~~-~~~~~~~i~~~s~SK~f~l~G~R  234 (378)
T PRK07682        158 ILLCSPNNPTGAVLNKSELEEIAVIVE-KHNLIVLSDEIYAELTYDE-AYTSFASI-KGMRERTILISGFSKGFAMTGWR  234 (378)
T ss_pred             EEECCCCCCCCCCCCHHHHHHHHHHHH-HCCEEEECCCHHHHHCCCC-CCCCHHHC-CCCCCCCCCCCCCHHHCCCCCCC
T ss_conf             998289798888889999999999764-4596795220146530698-76776552-56444542023412420785730


Q ss_pred             CCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEECCCCEEEE
Q ss_conf             44221101226875310012223322222222222234676432222221100000002455304776033027408998
Q gi|254780602|r  248 IGYAAGALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQGVPGIRYMIPDGAFYLY  327 (400)
Q Consensus       248 iG~~v~~~~li~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~~~~~L~~~~g~~~~~p~g~~y~~  327 (400)
                      +||+++|+++++.+.+++++...+++++.|.++..+++...+|+.++++.|++||+++.+.|+++ |+.+..|+||||+|
T Consensus       235 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~q~aa~~al~~~~~~~~~~~~~~~~~r~~~~~~l~~~-g~~~~~P~g~~~~~  313 (378)
T PRK07682        235 LGMIAAPVYFSEAMLKIHQYSMMCAPTMAQFAALEALRNGNDDVERMRDSYRKRRNFFVTSLNEI-GLTCHVPGGAFYAF  313 (378)
T ss_pred             EEEEEECHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHC-CCEECCCCEEEEEE
T ss_conf             69897089999999999975567798489999999997576879999999999999999999975-98220688678995


Q ss_pred             EECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCCC--CEEEEEEECCHHHHHHHHHHHHHHHHHCC
Q ss_conf             62641023321133224898999999998739799835022899--72899962999999999999999998609
Q gi|254780602|r  328 PSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGHG--PSIRISYAVSDAILEEACVRIKRFCHSLQ  400 (400)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~--~~iRis~~~~~e~l~~al~rl~~~l~~l~  400 (400)
                      ++++..          ..++.+|+.+|++++||+++||+.||.+  +|+||+|+.++++|++|++||++|++++|
T Consensus       314 ~~~~~~----------~~~~~~~~~~ll~~~~V~v~PG~~Fg~~g~~~iRl~~a~~~e~l~eal~Rl~~~l~~~k  378 (378)
T PRK07682        314 PSISST----------GLSSEEFAEQLLLEEKVAVVPGSVFGESGEGFIRCSYATSLEQLQEAMKRMKRFVENKK  378 (378)
T ss_pred             EECCCC----------CCCHHHHHHHHHHHCCEEEECCHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCC
T ss_conf             787888----------98999999999996999998862228999897999961999999999999999998469


No 45 
>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase. This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=100.00  E-value=0  Score=620.03  Aligned_cols=375  Identities=25%  Similarity=0.439  Sum_probs=337.2

Q ss_pred             HHHHHHHCCCCHHHHHHHHHHHH-HHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             78898738975899999999999-98699726656589749889999999999983887569987789899999999864
Q gi|254780602|r    4 ISNILRRVQPSATLVAAQRVRDL-RSKGIDVLCLTAGEPDFDMPENVKYAVVRAMERGETKYTAVAGISPLREAIVEKFR   82 (400)
Q Consensus         4 ~s~~~~~l~~s~~~~~~~~~~~~-~~~g~~ii~l~~G~p~~~~p~~i~~a~~~al~~~~~~Y~~~~G~~~lR~aia~~~~   82 (400)
                      +|+++++|+||++.++.+..+++ +++|+|||+||+|+|||++|+.|++|+.++++ +.++|+++.|+++||+|||+||+
T Consensus         1 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~iI~L~iG~Pd~~~P~~v~ea~~~al~-~~~~Y~~~~G~~~LReAia~~~~   79 (394)
T TIGR03538         1 MNPNLDRLQPYPFEKLAALLAGVTPPASLPPIALSIGEPKHATPAFVLEALRENLH-GLSTYPTTKGLPELRQAIARWLE   79 (394)
T ss_pred             CCCCHHHCCCCHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHC-CCCCCCCCCCCHHHHHHHHHHHH
T ss_conf             99456347998799999999600340899878784888999977999999999843-88899999886999999999999


Q ss_pred             HHCCC--CCCCC-CCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf             21013--33322-3323345433332222222332232--2223333232222222222222222222223222103331
Q gi|254780602|r   83 RDNDL--HYTSD-QIIVGTGAKHVIFNALMATVNMGDE--VLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNFQVSPEKL  157 (400)
Q Consensus        83 ~~~g~--~~~~e-~I~it~G~~~~l~~~~~~~~~~Gd~--Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~~~~~~~d~~~l  157 (400)
                      +++|+  .++|+ +|++|+|++++|+++++++++|||+  |++|+|+|+.|...+.++|++++.+|++++++|.+|++++
T Consensus        80 ~~~~~~~~~dp~~~I~vt~Ga~~al~~~~~~l~~pGd~~~V~~p~P~Y~~y~~~~~~~g~~~~~v~~~~e~~~~~d~~~l  159 (394)
T TIGR03538        80 RRFDLPTGVDPERHVLPVNGTREALFAFAQAVINPGQAPLVVMPNPFYQIYEGAALLAGAEPYFLNCTAENGFLPDFDAV  159 (394)
T ss_pred             HHHCCCCCCCCCCEEEECCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHCCCEEEECCCCCCCCCCCCHHHH
T ss_conf             97398877896776998988899999999997299981089947886645299999759989975867345888899999


Q ss_pred             HCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC-CCC----CCCCCCCCEEE
Q ss_conf             0001221220121135421000012333321112233333201110122110000012233-222----11123332257
Q gi|254780602|r  158 EQAITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFS-NIV----NVEPSLYERTL  232 (400)
Q Consensus       158 ~~~i~~~~k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~-s~~----~~~~~~~~~~i  232 (400)
                      ++.+++++|+|++||||||||.+++++++++|+++| ++||++||+||+|++++|++...+ ++.    ....+.++++|
T Consensus       160 ~~~~~~~tk~iil~sP~NPTG~v~s~~~l~~l~~~a-~~~~i~iisDE~Y~~l~~d~~~~p~~~~~~~~~~~~~~~~~~i  238 (394)
T TIGR03538       160 PESVWRRCQLLFVCSPGNPTGAVLSLETLKKLIELA-DQYGFIIASDECYSELYFDEANPPAGLLQAAAALGRDDFRRCL  238 (394)
T ss_pred             HHHCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHH-HCCCEEEEEECCCCCEEECCCCCCHHHHHHHHHHCCCCCCCEE
T ss_conf             874523665999889999989777879999999997-3267699980683327857888973787777662544447679


Q ss_pred             EECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCC
Q ss_conf             41465443223445444221101226875310012223322222222222234676432222221100000002455304
Q gi|254780602|r  233 VVNGVSKAYAMTGLRIGYAAGALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQGV  312 (400)
Q Consensus       233 ~~~S~SK~~~~~G~RiG~~v~~~~li~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~~~~~L~~~  312 (400)
                      +++||||+|++||||+||+++++++++++.+.++...++++.+.|.++++++. .+.|+.+.++.|++||+.+.+.|+..
T Consensus       239 ~~~S~SK~~~~~G~RiG~~~~~~~~i~~~~~~~~~~~~~~~~~~q~a~~aa~~-~~~~~~~~r~~~~~r~~~~~~~L~~~  317 (394)
T TIGR03538       239 VFHSLSKRSNLPGLRSGFVAGDAEILKAFLRYRTYHGCAMPPPTQLASIAAWN-DEQHVRENRALYREKFAAVLEILGPV  317 (394)
T ss_pred             EEECCCCCCCCCCCEEEEEECCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             99556544454675179995799999999985223742689999999999848-98999999999999999999986427


Q ss_pred             CCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCC--------CCEEEEEEECCHHH
Q ss_conf             7760330274089986264102332113322489899999999873979983502289--------97289996299999
Q gi|254780602|r  313 PGIRYMIPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGH--------GPSIRISYAVSDAI  384 (400)
Q Consensus       313 ~g~~~~~p~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~--------~~~iRis~~~~~e~  384 (400)
                        +.+..|+||||+|++++             .++.+|+.+|++++||+++||+.||.        .+||||||+.+.++
T Consensus       318 --~~~~~P~Gg~y~w~~~~-------------~~~~~f~~~ll~e~gV~v~PG~~F~~~~~~~~~G~g~iR~s~~~~~e~  382 (394)
T TIGR03538       318 --LDLELPDAGFYLWPKVP-------------GDDEAFARALYEEENVTVLPGRYLSREAEGVNPGAGRVRIALVAPLEE  382 (394)
T ss_pred             --CCCCCCCEEEEEEEECC-------------CCHHHHHHHHHHHCCEEEECCHHHCCCCCCCCCCCCEEEEEECCCHHH
T ss_conf             --96257985489999689-------------999999999998689999877341655457888999899997598999


Q ss_pred             HHHHHHHHHHHH
Q ss_conf             999999999999
Q gi|254780602|r  385 LEEACVRIKRFC  396 (400)
Q Consensus       385 l~~al~rl~~~l  396 (400)
                      |+||++||++|+
T Consensus       383 l~ea~~Rl~~fl  394 (394)
T TIGR03538       383 CVEAAERIRRFI  394 (394)
T ss_pred             HHHHHHHHHHHC
T ss_conf             999999999869


No 46 
>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=100.00  E-value=0  Score=617.34  Aligned_cols=380  Identities=43%  Similarity=0.676  Sum_probs=348.8

Q ss_pred             HHHCCCCHHHHHHHHHHHHHHCC--CCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf             87389758999999999999869--9726656589749889999999999983887569987789899999999864210
Q gi|254780602|r    8 LRRVQPSATLVAAQRVRDLRSKG--IDVLCLTAGEPDFDMPENVKYAVVRAMERGETKYTAVAGISPLREAIVEKFRRDN   85 (400)
Q Consensus         8 ~~~l~~s~~~~~~~~~~~~~~~g--~~ii~l~~G~p~~~~p~~i~~a~~~al~~~~~~Y~~~~G~~~lR~aia~~~~~~~   85 (400)
                      +....++..+.+...++++...+  .++|+|++|+|||++|+++++++.+++..+..+|++.+|.++||++||++|++++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~l~iG~Pd~~~p~~i~~a~~~a~~~~~~~Y~~~~G~~~LReaia~~~~~~~   82 (393)
T COG0436           3 LLKVLPSYTFAVLAEAKAAAELKGKEDVIDLSIGEPDFPTPEHIIEAAIEALEEGGTHYTPSAGIPELREAIAEKYKRRY   82 (393)
T ss_pred             CHHCCCCHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf             01027610688988999998621678679756889999986999999999986567777887677999999999988753


Q ss_pred             CCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCHHHHHHCCCCC
Q ss_conf             13333223-323345433332222222332232222333323222222222222222222222-3222103331000122
Q gi|254780602|r   86 DLHYTSDQ-IIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDMVALCGGIPVFVDTQQD-DNFQVSPEKLEQAITP  163 (400)
Q Consensus        86 g~~~~~e~-I~it~G~~~~l~~~~~~~~~~Gd~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~~-~~~~~d~~~l~~~i~~  163 (400)
                      |+++++++ |++|+|+++||++++.++++|||+|++++|+|+.|...+.++|++++.++++.+ ++|.+|+++|++++++
T Consensus        83 ~~~~~~~~eiivt~Ga~~al~~a~~al~~pGDeVlip~P~Y~~y~~~~~~~gg~~v~v~l~~~~~~f~~d~~~l~~~i~~  162 (393)
T COG0436          83 GLDVDPEEEIIVTAGAKEALFLAFLALLNPGDEVLIPDPGYPSYEAAVKLAGGKPVPVPLDEEENGFKPDLEDLEAAITP  162 (393)
T ss_pred             CCCCCCCCEEEECCCHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHCCCEEEEECCCCCCCCCCCCHHHHHHHCCC
T ss_conf             99889766289826679999999999718998899838998255999987799798721666655874799999864774


Q ss_pred             CCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCC
Q ss_conf             12201211354210000123333211122333332011101221100000122332221112333225741465443223
Q gi|254780602|r  164 KTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAM  243 (400)
Q Consensus       164 ~~k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~~  243 (400)
                      |||+|+|||||||||.+++++++++|+++| ++||++||+||+|++|+|++.+++|++.+.+. .+++|+++||||+|+|
T Consensus       163 ktk~i~ln~PnNPTGav~~~~~l~~i~~~a-~~~~i~ii~DE~Y~~l~yd~~~~~s~~~~~~~-~~~~I~i~s~SK~~~m  240 (393)
T COG0436         163 KTKAIILNSPNNPTGAVYSKEELKAIVELA-REHDIIIISDEIYEELVYDGAEHPSILELAGA-RDRTITINSFSKTYGM  240 (393)
T ss_pred             CCEEEEEECCCCCCCCCCCHHHHHHHHHHH-HHCCEEEEEECCCCCCCCCCCCCCCHHHCCCC-CCEEEEEECCCCCCCC
T ss_conf             645999979999667788999999999999-98792999963644362689877775442787-6418999456335788


Q ss_pred             CCCCCCCCCCH-HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCHHHHHHCCCCCEEEE-
Q ss_conf             44544422110-1226875310012223322222222222234676--4322222211000000024553047760330-
Q gi|254780602|r  244 TGLRIGYAAGA-LSLIKSMIVLQGQQTSGACSIAQWAAVEALNGPQ--DFVVNNRKIFEYRRDLCVAQLQGVPGIRYMI-  319 (400)
Q Consensus       244 ~G~RiG~~v~~-~~li~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~--~~~~~~~~~~~~~r~~~~~~L~~~~g~~~~~-  319 (400)
                      +|||+||++++ +++++.+.++++++.+|++++.|.+++.+|++.+  ++++.+++.|++||+.+++.|++++|+.+.. 
T Consensus       241 tG~RiG~~v~~~~~l~~~~~~l~~~~~~~~~~~~Q~aa~~aL~~~~~~~~~~~~~~~~~~rr~~l~~~l~~~~g~~~~~~  320 (393)
T COG0436         241 TGWRIGWVVGPPEELIAALRKLKSYLTSCAPTPAQYAAIAALNGPQSDEVVEEMREEYRERRDLLVEALNEIGGLSVVKP  320 (393)
T ss_pred             CCCCEEEEEECHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECC
T ss_conf             36121899727699999999999872368778999999999567663058999999999999999999975588665138


Q ss_pred             CCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCCC---CEEEEEEECCHHHHHHHHHHHHHHH
Q ss_conf             2740899862641023321133224898999999998739799835022899---7289996299999999999999999
Q gi|254780602|r  320 PDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGHG---PSIRISYAVSDAILEEACVRIKRFC  396 (400)
Q Consensus       320 p~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~---~~iRis~~~~~e~l~~al~rl~~~l  396 (400)
                      |+|+||+|++++..           .++++||.+|++++||+++||+.||..   +|||+||+.+++.+++|++||++++
T Consensus       321 p~Ga~y~~~~i~~~-----------~d~~~f~~~Ll~~~gV~v~PG~~Fg~~~g~~~vRis~~~~~~~l~~a~~rl~~~~  389 (393)
T COG0436         321 PEGAFYLFPKIPEL-----------LDSEEFAKKLLEEAGVAVVPGSGFGEPPGEGYVRLSLATSEETLEEALRRLARFL  389 (393)
T ss_pred             CCCCEEEEEECCCC-----------CCHHHHHHHHHHHCCEEEECHHHHCCCCCCCEEEEEEECCHHHHHHHHHHHHHHH
T ss_conf             88645997657998-----------9989999999986799995725749787798799997368999999999999998


Q ss_pred             HHCC
Q ss_conf             8609
Q gi|254780602|r  397 HSLQ  400 (400)
Q Consensus       397 ~~l~  400 (400)
                      +.++
T Consensus       390 ~~~~  393 (393)
T COG0436         390 AEYR  393 (393)
T ss_pred             HHCC
T ss_conf             6109


No 47 
>PRK12414 putative aminotransferase; Provisional
Probab=100.00  E-value=0  Score=619.82  Aligned_cols=372  Identities=30%  Similarity=0.485  Sum_probs=344.4

Q ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             78898738975899999999999986997266565897498899999999999838875699877898999999998642
Q gi|254780602|r    4 ISNILRRVQPSATLVAAQRVRDLRSKGIDVLCLTAGEPDFDMPENVKYAVVRAMERGETKYTAVAGISPLREAIVEKFRR   83 (400)
Q Consensus         4 ~s~~~~~l~~s~~~~~~~~~~~~~~~g~~ii~l~~G~p~~~~p~~i~~a~~~al~~~~~~Y~~~~G~~~lR~aia~~~~~   83 (400)
                      -++|+.++++|.+.++.+.|.     ++|||+|++|+|||+||+++++++.++++++.++|+++.|.++||++||+||++
T Consensus         7 p~~r~~~~~~~~~~~~~~~a~-----~~dvI~l~~G~Pd~~~p~~i~~a~~~a~~~~~~~Y~~~~G~~~LReaia~~~~~   81 (384)
T PRK12414          7 PRSKLPDVGTTIFTVIGQLAA-----QHDALNLSQGAPNFAPDPALVEGVARAMRDGHNQYAPMAGIAALREALAEKTER   81 (384)
T ss_pred             CHHHCCCCCCCHHHHHHHHHC-----CCCCEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf             654578999988999999973-----899688189899999989999999999961999898998719999999999999


Q ss_pred             HCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCC
Q ss_conf             101333322-3323345433332222222332232222333323222222222222222222222322210333100012
Q gi|254780602|r   84 DNDLHYTSD-QIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQAIT  162 (400)
Q Consensus        84 ~~g~~~~~e-~I~it~G~~~~l~~~~~~~~~~Gd~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~  162 (400)
                      ++|++++|+ +|++|+|+++||+++++++++|||+|++++|+|+.|...++.+|++++++++.++ +|.+|.++++++++
T Consensus        82 ~~g~~~dp~~~i~vt~G~~~al~~~~~al~~pGD~Vlv~~P~y~~y~~~~~~~Ga~~v~v~~~~~-~~~~d~~~l~~~~~  160 (384)
T PRK12414         82 LYGARYDPDTEVTVIASASEGLYAAISALVHPGDEVIYFEPSFDSYAPIVRLQGATPVAIKLSPE-HFRVNWDEVAAAIT  160 (384)
T ss_pred             HHCCCCCCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCEEEEEECCCC-CCCCCHHHHHHHCC
T ss_conf             96899998880998479899999999996799998999089706569999985998999866855-68889999996277


Q ss_pred             CCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCC
Q ss_conf             21220121135421000012333321112233333201110122110000012233222111233322574146544322
Q gi|254780602|r  163 PKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYA  242 (400)
Q Consensus       163 ~~~k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~  242 (400)
                      +++|++++||||||||.++|.+++++|+++| +++|++||+||+|+++.|++.+++++... +++.+++|+++||||+|+
T Consensus       161 ~~tk~iil~~P~NPTG~v~s~e~l~~l~~la-~~~~i~ii~DE~Y~~l~f~g~~~~s~~~~-~~~~~~~I~i~S~SK~~~  238 (384)
T PRK12414        161 PRTRMIIVNTPHNPTATVFSEADLARLAQLT-RGTDIVVLSDEVYEHVVFDGARHHSMARH-RELAERSVIVSSFGKSYH  238 (384)
T ss_pred             CCCEEEEECCCCCCCCCCCCHHHHHHHHHHH-HHCCEEEEECCCHHHEECCCCCCCCHHHC-CCCCCCCCCCCCCCCCCC
T ss_conf             7866999799989877137566699999987-51588999666323303178777664315-120113323567750000


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEECCC
Q ss_conf             34454442211012268753100122233222222222222346764322222211000000024553047760330274
Q gi|254780602|r  243 MTGLRIGYAAGALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQGVPGIRYMIPDG  322 (400)
Q Consensus       243 ~~G~RiG~~v~~~~li~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~~~~~L~~~~g~~~~~p~g  322 (400)
                      +||||+||+++|+++++++.+++++...+++++.|.+++++|.+++.+. ++++.|++||+.+.+.|++. ++++.+|+|
T Consensus       239 ~~G~RvG~~v~p~~li~~~~~~~~~~~~~~~~~~Q~a~~~~l~~~~~~~-~~~~~y~~rrd~l~~~L~~~-~~~~~~p~G  316 (384)
T PRK12414        239 VTGWRVGYCLAPAELMDEIRKVHQFMVFSADTPMQYAFAEALARPASYL-GLSAFYQRKRDLLARELADS-RFELLPSEG  316 (384)
T ss_pred             CCCCEEEEEEECHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCHHHH-HHHHHHHHHHHHHHHHHHHC-CCEEECCCC
T ss_conf             2651279998489999999999975657867899999999982982499-99999999999999976756-987878980


Q ss_pred             CEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCC----CCEEEEEEECCHHHHHHHHHHHHH
Q ss_conf             089986264102332113322489899999999873979983502289----972899962999999999999999
Q gi|254780602|r  323 AFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGH----GPSIRISYAVSDAILEEACVRIKR  394 (400)
Q Consensus       323 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~----~~~iRis~~~~~e~l~~al~rl~~  394 (400)
                      |||+|++++.+.         ..++.+|+.+|++++||+++||+.||.    .+||||||+.++++|+||++||++
T Consensus       317 ~fy~~~~~~~~~---------~~~d~~~~~~ll~e~gV~vvPG~~Fg~~g~~~g~iRlsfa~~~e~l~eg~~RL~~  383 (384)
T PRK12414        317 SFFMLARFRHFS---------DESDSDFVLRLIRDARVATIPLSAFYADGTDTGVIRLSFSKDDATLVEGARRLCS  383 (384)
T ss_pred             EEEEEEECCCCC---------CCCHHHHHHHHHHHCCEEEEECHHHCCCCCCCCEEEEEECCCHHHHHHHHHHHHC
T ss_conf             799999768789---------9999999999998599999826321799998998999967999999999999703


No 48 
>PRK07309 aromatic amino acid aminotransferase; Validated
Probab=100.00  E-value=0  Score=617.52  Aligned_cols=378  Identities=33%  Similarity=0.546  Sum_probs=349.1

Q ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             67889873897589999999999998699726656589749889999999999983887569987789899999999864
Q gi|254780602|r    3 FISNILRRVQPSATLVAAQRVRDLRSKGIDVLCLTAGEPDFDMPENVKYAVVRAMERGETKYTAVAGISPLREAIVEKFR   82 (400)
Q Consensus         3 ~~s~~~~~l~~s~~~~~~~~~~~~~~~g~~ii~l~~G~p~~~~p~~i~~a~~~al~~~~~~Y~~~~G~~~lR~aia~~~~   82 (400)
                      .+|+|++++++|.++++.+++.    ++.|||+||+|+|||++|++|++|++++++++.++|+++.|.++||++|++|++
T Consensus         6 ~~s~~~~~~~~s~ir~~~~~~~----~~~dvI~l~ig~pdf~~p~~i~~a~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~   81 (390)
T PRK07309          6 RFNKNLDKIEVSLIRQFDQSIS----DIPGILKLTLGEPDFTTPEHVKEAAKAAIDANQSHYTGMAGLLELRQAAADFVK   81 (390)
T ss_pred             HHHHHHHCCCCCHHHHHHHHHH----CCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf             9999871299878999999860----899908998978999988999999999984799999799774999999999999


Q ss_pred             HHCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCC
Q ss_conf             2101333322-332334543333222222233223222233332322222222222222222222232221033310001
Q gi|254780602|r   83 RDNDLHYTSD-QIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQAI  161 (400)
Q Consensus        83 ~~~g~~~~~e-~I~it~G~~~~l~~~~~~~~~~Gd~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i  161 (400)
                      +++|++++|+ +|++|+|+++||.++++++++|||+|++++|+|+.|...++..|++++.+++++ ++|.+|+|.+++.+
T Consensus        82 ~~~g~~~~p~~~I~it~G~~~al~~~~~~l~~pGD~Vli~~P~Y~~~~~~~~~~g~~~v~v~~~~-~~~~~~~~~le~~~  160 (390)
T PRK07309         82 EKYNLDYAPENEILVTIGATEALSASLTAILEPGDKVLLPAPAYPGYEPIVNLVGAEIVEIDTTE-NDFVLTPEMLEKAI  160 (390)
T ss_pred             HHHCCCCCCCCEEEECCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHCCCEEEEECCCC-CCCCCCHHHHHHHH
T ss_conf             98589999888799888989999999999669989899837874419999998498899944620-11578999999998


Q ss_pred             C---CCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCC
Q ss_conf             2---2122012113542100001233332111223333320111012211000001223322211123332257414654
Q gi|254780602|r  162 T---PKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVS  238 (400)
Q Consensus       162 ~---~~~k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~S  238 (400)
                      .   +++|++++||||||||.+||++++++|+++| ++||++||+||+|++++|++.++.|+.+..   .+++|+++|+|
T Consensus       161 ~~~~~k~k~lil~~P~NPtG~v~s~e~l~~i~~la-~~~~v~iisDEiY~~l~~~~~~~~s~~~~~---~d~~i~~~s~S  236 (390)
T PRK07309        161 LEQGDKLKAVILNYPANPTGVTYSREQIKALAEVL-KKYDIFVISDEVYSELTYTGQSHVSIAEYL---PDQTILINGLS  236 (390)
T ss_pred             HHCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHH-HHCCEEEEEECCCHHCCCCCCCCCCHHHHC---CCCEEEEECCC
T ss_conf             74888749999789989988878999999999999-768989995055111014898864487755---57679996060


Q ss_pred             CCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEE
Q ss_conf             43223445444221101226875310012223322222222222234676432222221100000002455304776033
Q gi|254780602|r  239 KAYAMTGLRIGYAAGALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQGVPGIRYM  318 (400)
Q Consensus       239 K~~~~~G~RiG~~v~~~~li~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~~~~~L~~~~g~~~~  318 (400)
                      |+|++||||+||+++|+++++++.+.+++...+++++.|.++..+|....++...++..|.+||+.+.+.|.++ |+++.
T Consensus       237 K~~~~~G~RiG~i~~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~al~~~~~~~~~~~~~y~~rr~~l~~~l~~~-~~~~~  315 (390)
T PRK07309        237 KSHAMTGWRIGLIFAPAELTAQLIKSHQYLVTAATTMAQFAAVEALTNGKDDALPMKKEYIKRRDYIIEKMTAL-GFKII  315 (390)
T ss_pred             HHHHCCCCCEEEEECCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCC
T ss_conf             56540466358997499999999999865305787499999999997482789999999999999999999862-78633


Q ss_pred             ECCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCC--CCEEEEEEECCHHHHHHHHHHHHHHH
Q ss_conf             0274089986264102332113322489899999999873979983502289--97289996299999999999999999
Q gi|254780602|r  319 IPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGH--GPSIRISYAVSDAILEEACVRIKRFC  396 (400)
Q Consensus       319 ~p~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~--~~~iRis~~~~~e~l~~al~rl~~~l  396 (400)
                      .|+||||+|++++...         ..++.+|+..|++++||+++||+.||.  ++|+||+|+.++++|++|++||++|+
T Consensus       316 ~P~gg~ylw~~lp~~~---------~~d~~~~~~~l~~~~gV~v~PG~~Fg~~g~g~iRl~~a~~~e~l~eal~Rl~~~l  386 (390)
T PRK07309        316 KPDGAFYIFAKIPAGY---------NQDSFKFLQDFAKEKAVAIIPGVAFGPYGEGYVRLSYAASMETIKEAMKRLKEYM  386 (390)
T ss_pred             CCCEEEEEEEECCCCC---------CCCHHHHHHHHHHHCCEEEECCHHHCCCCCCEEEEEEECCHHHHHHHHHHHHHHH
T ss_conf             8980069807457899---------9899999999999699999777322889998799998289999999999999999


Q ss_pred             HHC
Q ss_conf             860
Q gi|254780602|r  397 HSL  399 (400)
Q Consensus       397 ~~l  399 (400)
                      ++.
T Consensus       387 ~e~  389 (390)
T PRK07309        387 EEH  389 (390)
T ss_pred             HHC
T ss_conf             971


No 49 
>PRK07590 L,L-diaminopimelate aminotransferase; Validated
Probab=100.00  E-value=0  Score=616.64  Aligned_cols=375  Identities=22%  Similarity=0.265  Sum_probs=329.9

Q ss_pred             CHHHHHHHHHCCC-CHHHHHHHHHHHHHHC--CCCEEECCCCCCCCCCCHHHHHHHHHHHHC-----CCCCCCCCCCCHH
Q ss_conf             9367889873897-5899999999999986--997266565897498899999999999838-----8756998778989
Q gi|254780602|r    1 MVFISNILRRVQP-SATLVAAQRVRDLRSK--GIDVLCLTAGEPDFDMPENVKYAVVRAMER-----GETKYTAVAGISP   72 (400)
Q Consensus         1 m~~~s~~~~~l~~-s~~~~~~~~~~~~~~~--g~~ii~l~~G~p~~~~p~~i~~a~~~al~~-----~~~~Y~~~~G~~~   72 (400)
                      |.+++.+..++.+ +++-++..+.++++++  |+|||+||+|+|||++|++|++|+++++++     +.++|+++.|+|+
T Consensus         1 ~~~~~~~~~~~~~~y~f~~~~~~~~~~~~~~~~~dvI~L~iGePdf~tP~~i~eA~~~a~~~~~~~~~~~gYt~~~G~~e   80 (409)
T PRK07590          1 MAKINENYLKLKAGYLFPEIARRVNAFREANPEAKIIRLGIGDVTQPLPPAVIEAMHKAVDEMGTAETFRGYGPEQGYDF   80 (409)
T ss_pred             CCCCCCHHHCCCCCCCCHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHH
T ss_conf             98646033418878855899999999997589998667889897899999999999999983012688785898747499


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-----------CC
Q ss_conf             9999999864210133332233233454333322222223322322223333232222222222222-----------22
Q gi|254780602|r   73 LREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDMVALCGGIP-----------VF  141 (400)
Q Consensus        73 lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l~~~~~~~~~~Gd~Vlv~~P~y~~y~~~~~~~g~~~-----------~~  141 (400)
                      ||+|||+||++++|+++++|+|++|+|++++++. ++++++|||+|++++|+|+.|...+.++|+.+           ++
T Consensus        81 LReAIa~~~~~~~g~~~~~~~I~vt~Ga~~~l~~-i~~ll~pGDeViip~P~Yp~Y~~~~~laG~~~~~~~~~~~~~~~~  159 (409)
T PRK07590         81 LREKIAENDYQARGCDIDAEEIFVSDGAKCDTGN-ILDIFGPDNTIAVTDPVYPVYVDTNVMAGRTGEANEDGRYEGIVY  159 (409)
T ss_pred             HHHHHHHHHHHHHCCCCCHHHEEECCCHHHHHHH-HHHHHCCCCEEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCEEE
T ss_conf             9999999999984899876886874867999999-999839999899668877446989987488530135665567246


Q ss_pred             CCCCCCCCCCCHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCC
Q ss_conf             22222232221033310001221220121135421000012333321112233333201110122110000012233222
Q gi|254780602|r  142 VDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIV  221 (400)
Q Consensus       142 v~~~~~~~~~~d~~~l~~~i~~~~k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~  221 (400)
                      +|+.++++|.+++      .++++|+|+|||||||||.||+++++++|+++| ++||++||+||+|++++|++..+.|+.
T Consensus       160 ~~~~~e~~f~~~~------~~~ktk~iilnsP~NPTG~V~s~eel~~i~~~a-~~~~i~iisDEiY~~~~~~~~~p~si~  232 (409)
T PRK07590        160 LPCTAENNFIPEL------PSEKVDIIYLCFPNNPTGTVATKEQLKAWVDYA-KANGSLILFDAAYEAFISDPSIPHSIY  232 (409)
T ss_pred             CCCCHHHCCCCCC------CCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHH-HHCCCEEEEECCCCCCCCCCCCCCCHH
T ss_conf             5588343547435------654602999848989956557999999999999-874978997076200136898775776


Q ss_pred             CCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHH------------HCCCCCCCCCCCCCCCCCCCCCC-CC
Q ss_conf             111233322574146544322344544422110122687531------------00122233222222222222346-76
Q gi|254780602|r  222 NVEPSLYERTLVVNGVSKAYAMTGLRIGYAAGALSLIKSMIV------------LQGQQTSGACSIAQWAAVEALNG-PQ  288 (400)
Q Consensus       222 ~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~v~~~~li~~l~~------------~~~~~~~~~~~~~q~a~~~~l~~-~~  288 (400)
                      ++ ++..+++|+++||||+|+|||||+||+++|++++.....            .+.....+++.+.|.++.+++.. ++
T Consensus       233 ~~-~~~~~~~I~i~s~SK~~~mtGwRiG~~v~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~aa~a~l~~~~~  311 (409)
T PRK07590        233 EI-EGAKECAIEFRSFSKNAGFTGTRCAYTVVPKELKGKDSEGEIVDLNSLWNRRQSTKFNGVSYIVQRGAEAVYSPEGQ  311 (409)
T ss_pred             HC-CCCCCCEEEEEECHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCH
T ss_conf             54-65501468971352640786443698975799998864446999999999875025578689999999999654878


Q ss_pred             CCCCCCCCCCCCCCCCHHHHHHCCCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCC
Q ss_conf             43222222110000000245530477603302740899862641023321133224898999999998739799835022
Q gi|254780602|r  289 DFVVNNRKIFEYRRDLCVAQLQGVPGIRYMIPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSF  368 (400)
Q Consensus       289 ~~~~~~~~~~~~~r~~~~~~L~~~~g~~~~~p~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~F  368 (400)
                      .+++++++.|++||+.+.+.|+++ |+++..|+|+||+|+++++           ..++++|+++|++++||+++||+.|
T Consensus       312 ~~~~~~~~~y~~rr~~~~~~L~~~-g~~~~~p~gafY~w~~~~~-----------~~~~~ef~~~Ll~e~~Vav~PG~~F  379 (409)
T PRK07590        312 AQIKELISYYMENAKIIREGLEAA-GFTVYGGVNAPYIWVKTPD-----------GLSSWDFFDKLLQEANVVGTPGSGF  379 (409)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHC-CCEEECCCCCEEEEEECCC-----------CCCHHHHHHHHHHHCCEEEECCHHH
T ss_conf             999999999999999999999975-9767279972389888999-----------9898999999998699999686465


Q ss_pred             CCC--CEEEEEEECCHHHHHHHHHHHHHHH
Q ss_conf             899--7289996299999999999999999
Q gi|254780602|r  369 GHG--PSIRISYAVSDAILEEACVRIKRFC  396 (400)
Q Consensus       369 g~~--~~iRis~~~~~e~l~~al~rl~~~l  396 (400)
                      |.+  +|||+||+.+.++|++|++||+++|
T Consensus       380 G~~g~g~vRls~a~~~e~l~ea~~Ri~~~L  409 (409)
T PRK07590        380 GPAGEGYFRLSAFGSRENVLEAMERIKKLL  409 (409)
T ss_pred             CCCCCCEEEEEECCCHHHHHHHHHHHHHHC
T ss_conf             899989699997289999999999999859


No 50 
>PRK06855 aminotransferase; Validated
Probab=100.00  E-value=0  Score=612.23  Aligned_cols=388  Identities=22%  Similarity=0.308  Sum_probs=330.3

Q ss_pred             HHHHCCCCHHHHHHHHHHHHHHCCCCEEECCCCCC---CCCCCHHHHHHHHHHHHCCCC-CCCCCCCCHHHHHHHHHHHH
Q ss_conf             98738975899999999999986997266565897---498899999999999838875-69987789899999999864
Q gi|254780602|r    7 ILRRVQPSATLVAAQRVRDLRSKGIDVLCLTAGEP---DFDMPENVKYAVVRAMERGET-KYTAVAGISPLREAIVEKFR   82 (400)
Q Consensus         7 ~~~~l~~s~~~~~~~~~~~~~~~g~~ii~l~~G~p---~~~~p~~i~~a~~~al~~~~~-~Y~~~~G~~~lR~aia~~~~   82 (400)
                      +...+ .+.+++|..+|++++++|+|||+|++|+|   ||++|+++++++.+++.++.+ +|+++.|+++||++||+||+
T Consensus         9 ~~~~~-~y~Ir~i~~~A~~l~~~G~~Ii~L~iGeP~~~df~tP~~i~ea~~~a~~~~~~~~Yt~s~G~~eLReaIA~~~~   87 (433)
T PRK06855          9 GAGEL-TYEIRNIVNVAKKLEKLGIKINWENIGDPIAKGEKIPLWMKEIVSELVMDDKSYGYCPTRGVLETREFLAELTN   87 (433)
T ss_pred             CCCCE-EEEHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf             85434-56198899999999977997657469896989999888999999999858999886998884999999999999


Q ss_pred             HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCHHHHHHCCC
Q ss_conf             2101333322332334543333222222233223222233332322222-222222222222222232221033310001
Q gi|254780602|r   83 RDNDLHYTSDQIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDM-VALCGGIPVFVDTQQDDNFQVSPEKLEQAI  161 (400)
Q Consensus        83 ~~~g~~~~~e~I~it~G~~~~l~~~~~~~~~~Gd~Vlv~~P~y~~y~~~-~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i  161 (400)
                      +++|++++||+|++|+|++++|..+ .++++|||+|++|+|+|+.|... ....|++++.++++++++|.+|+++|++++
T Consensus        88 ~~~g~~~~pd~I~vt~Ga~~ai~~~-~~~l~pgdeVlip~P~Yp~Y~~~~~~~~g~~pv~~~l~~e~~f~~d~e~l~~~i  166 (433)
T PRK06855         88 KRGGAQITPDDILFFNGLGDAIAKI-YGFLRREARVLGPSPAYSTHSSAEAAHAGCEPVTYRLDPEDNWYPDLDDLENKV  166 (433)
T ss_pred             HHCCCCCCHHHEEEECCHHHHHHHH-HHHCCCCCEEEECCCCCCCCHHHHHHHCCCEEEEEECCHHCCCCCCHHHHHHHH
T ss_conf             8739999878988957769999999-996289998996278873509999996898689995571018778999999998


Q ss_pred             --CCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCC
Q ss_conf             --221220121135421000012333321112233333201110122110000012233222111233322574146544
Q gi|254780602|r  162 --TPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSK  239 (400)
Q Consensus       162 --~~~~k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK  239 (400)
                        ++++|+|+++|||||||.+++++++++|+++| +++|++||+||+|++++|++.++.|+..+.++  .++|+++||||
T Consensus       167 ~~~~~~kaiii~nP~NPTG~v~s~e~l~~i~~~a-~~~~i~visDEiY~~l~ydg~~~~s~~~~~~~--~~~i~~ns~SK  243 (433)
T PRK06855        167 KYNPSIAGILLINPDNPTGAVYPKEILREIVDIA-REYDLFIIADEIYANIVYNGKKTVPLSEVIGD--VPGIALKGISK  243 (433)
T ss_pred             HCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHH-HHCCCEEEEECCCCCCEECCCCCCCHHHHCCC--CCEEEEEEEHH
T ss_conf             6699724999838999988667999999999999-97598698631011245489876388996675--77379820010


Q ss_pred             CCCCCCCCCCCCCC----HHHHHHHH-HHHC--CCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCHHHHHH
Q ss_conf             32234454442211----01226875-3100--12223322222222222234676--4322222211000000024553
Q gi|254780602|r  240 AYAMTGLRIGYAAG----ALSLIKSM-IVLQ--GQQTSGACSIAQWAAVEALNGPQ--DFVVNNRKIFEYRRDLCVAQLQ  310 (400)
Q Consensus       240 ~~~~~G~RiG~~v~----~~~li~~l-~~~~--~~~~~~~~~~~q~a~~~~l~~~~--~~~~~~~~~~~~~r~~~~~~L~  310 (400)
                      +|+|+|||+||++.    +.+.++++ ..+.  .....|++++.|.++..++.+++  .|++++++.|++||+++++.|+
T Consensus       244 ~~~mtGwRiG~~~~~~~~~~~~~~~~~~~i~~~~~~~~cs~~~~Q~a~~a~l~~~~~~~~~~e~~~~y~~RRd~l~~~L~  323 (433)
T PRK06855        244 ELPWPGSRCGWIEVYNAEKDPVFKKYIKSILDAKMIEVCSTTLPQKAIPAIMSHPEYKPYLEERNSRYEKRSNIAYEYLK  323 (433)
T ss_pred             CCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             38976312678863157736999999999998774275813899999999855984379999999999999999999995


Q ss_pred             CCCCCEEEECCCCEEEEEECCCCCCCC----------------CCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCCC-CE
Q ss_conf             047760330274089986264102332----------------1133224898999999998739799835022899-72
Q gi|254780602|r  311 GVPGIRYMIPDGAFYLYPSCQDLIGKK----------------SPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGHG-PS  373 (400)
Q Consensus       311 ~~~g~~~~~p~g~~y~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~-~~  373 (400)
                      +++|++|.+|+|+||+|+.+++.....                ........+|++||.+||+++||+++||++||.+ ++
T Consensus       324 ~ipGv~~~~P~GAFY~fv~~~~~~l~~~~~lp~~~~~~~~~~~~~~~~~~~~D~~f~~~LLee~gVavVPGS~FG~~~~g  403 (433)
T PRK06855        324 DIPGLKVNRTNGAFYMTVVFEDGVLNNRQSLPIENAEVRELVESLVKQGVAPDKRFVYYLLASTGICVVPLSSFCTELNG  403 (433)
T ss_pred             CCCCCEECCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCEEEECCCCCCCCCCC
T ss_conf             69993716997115875305532356322466555467888876541278867999999998559999657112899996


Q ss_pred             EEEEEECCHHHHHHHHHH-HHHHHHHC
Q ss_conf             899962999999999999-99999860
Q gi|254780602|r  374 IRISYAVSDAILEEACVR-IKRFCHSL  399 (400)
Q Consensus       374 iRis~~~~~e~l~~al~r-l~~~l~~l  399 (400)
                      +|++|+.++|++.|++.| |+++++.+
T Consensus       404 fRit~l~~~E~~~E~i~r~~~e~~~e~  430 (433)
T PRK06855        404 FRVTLLERDEEKFEWIYRTLAEKIGEY  430 (433)
T ss_pred             EEEEECCCCHHHHHHHHHHHHHHHHHH
T ss_conf             699957970799999999999999998


No 51 
>PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional
Probab=100.00  E-value=0  Score=601.96  Aligned_cols=370  Identities=26%  Similarity=0.450  Sum_probs=329.1

Q ss_pred             HHHHHHHHHHHCCCCEEECCCCCC---CCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf             999999999986997266565897---49889999999999983887569987789899999999864210133332233
Q gi|254780602|r   18 VAAQRVRDLRSKGIDVLCLTAGEP---DFDMPENVKYAVVRAMERGETKYTAVAGISPLREAIVEKFRRDNDLHYTSDQI   94 (400)
Q Consensus        18 ~~~~~~~~~~~~g~~ii~l~~G~p---~~~~p~~i~~a~~~al~~~~~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~e~I   94 (400)
                      .+.++|+.++.+|++|+.|++|+|   .|.+|++|+..+.+.+.+ ..||++++|+...|+||.+|++.+.-.+++.|+|
T Consensus       133 p~~~~a~~~e~~g~~i~klnignpa~fgf~~p~~~~~~~~~~~~~-~~gy~~s~g~~~ar~a~~~~~q~~~~~~~~~~di  211 (518)
T PRK13355        133 PVADEAMRMEANGTHILKLNIGNPAPFGFRTPDEVVYDMAHQLPD-TEGYSPSKGLFSARKAIMQYAQLKNIPNVDIDDI  211 (518)
T ss_pred             HHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCC-CCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHE
T ss_conf             899999999974881676347898866888948999999973723-4587545575689999999999769999874035


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEECCCC
Q ss_conf             23345433332222222332232222333323222222222222222222222322210333100012212201211354
Q gi|254780602|r   95 IVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPS  174 (400)
Q Consensus        95 ~it~G~~~~l~~~~~~~~~~Gd~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~k~i~l~nP~  174 (400)
                      .++||.+++|.+++++++++||+||+|.|.||.|...+.++|+++++|+++++++|.||+|+|+++|++|||+|+|||||
T Consensus       212 ~~gnGvSE~i~~am~Alln~GDeVLiP~P~YPlyta~v~L~Gg~pV~y~~dEe~~w~PDiedLe~kIT~kTKAIVInNPN  291 (518)
T PRK13355        212 YTGNGVSELINLSMSALLDDGDEVLVPSPDYPLWTACVNLAGGTAVHYRCDEESEWYPDIDDIRSKITSKTKAIVIINPN  291 (518)
T ss_pred             EECCCHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHCCCCCEEEEEECCC
T ss_conf             65477679999999983689998982599997789998860987889874522177889999985357155799996898


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCC-
Q ss_conf             2100001233332111223333320111012211000001223322211123332257414654432234454442211-
Q gi|254780602|r  175 NPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTGLRIGYAAG-  253 (400)
Q Consensus       175 NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~v~-  253 (400)
                      ||||.+||++++++|+++| ++||++||+||+|++++|++.+|.|++++.++.  .+|+++||||+|+|||||+||++. 
T Consensus       292 NPTGAVyS~E~LeeIaeiA-rehdLiIISDEIY~~LvYDg~~h~Siasla~d~--~~It~NG~SKsyaMtGWRiGwmv~s  368 (518)
T PRK13355        292 NPTGALYPKEVLQQIVDIA-REHQLIIFSDEIYDRLVMDGLEHTSIASLAPDL--FCVTFSGLSKSHMIAGFRAGWMMLS  368 (518)
T ss_pred             CCCCCCCCHHHHHHHHHHH-HHCCEEEEECCCHHHCCCCCCCCCCHHHCCCCC--EEEEECCCCCCEECCEEEEEEEEEC
T ss_conf             9888788999999999999-985969996230221006898630476708864--5999887766633220113665424


Q ss_pred             -HH----HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCCHHHHHHCCCCCEEEECCCCEE
Q ss_conf             -01----226875310012223322222222222234676---4322222211000000024553047760330274089
Q gi|254780602|r  254 -AL----SLIKSMIVLQGQQTSGACSIAQWAAVEALNGPQ---DFVVNNRKIFEYRRDLCVAQLQGVPGIRYMIPDGAFY  325 (400)
Q Consensus       254 -~~----~li~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~---~~~~~~~~~~~~~r~~~~~~L~~~~g~~~~~p~g~~y  325 (400)
                       +.    ++++.+..+.+ ...|++.+.|.++..+|...+   +++.... .+.+||+++++.|++++|++|.+|+|+||
T Consensus       369 G~~~~a~~~Ie~l~~Las-~~lcsnvpaQ~A~~aAL~g~qs~~d~~~~~~-rl~erRdlv~e~Ln~IpGvscvkP~GAFY  446 (518)
T PRK13355        369 GNKRHAKDYIEGLNMLAN-MRMCSNVPAQSVVQTALGGHQSVKDYTVPGG-RLYDQRELVYDMLNAIPGISAVKPKAAFY  446 (518)
T ss_pred             CCHHHHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHCCCCCHHHHHHHHH-HHHHHHHHHHHHHHCCCCCEECCCCEEEE
T ss_conf             858999999999999860-4566368999999998628764899999999-99999999999983599976589981589


Q ss_pred             EEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCC--CCCEEEEEEECCHHHHHHHHHHHHHHHHHCC
Q ss_conf             98626410233211332248989999999987397998350228--9972899962999999999999999998609
Q gi|254780602|r  326 LYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFG--HGPSIRISYAVSDAILEEACVRIKRFCHSLQ  400 (400)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg--~~~~iRis~~~~~e~l~~al~rl~~~l~~l~  400 (400)
                      +|++++..       .....+|++||.+||++++|+++||++||  .++||||+|+.+.|+|++|++||++||+++|
T Consensus       447 lFPkID~~-------~~~i~dDeeFal~LL~Ee~VlVVPGsaFG~~~pghfRIsyaps~e~L~EA~~RI~~FL~~yr  516 (518)
T PRK13355        447 IFPKIDVK-------IFNIHSDEQFALDLLHEKHILISHGGAFNWDKPDHFRVVYLPRLGMLEETMDELDDFFSYYR  516 (518)
T ss_pred             EEEECCCC-------CCCCCCHHHHHHHHHHHCCEEEECCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHH
T ss_conf             95541534-------48998999999999985899995875448999897999927999999999999999999865


No 52 
>TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh).
Probab=100.00  E-value=0  Score=582.62  Aligned_cols=372  Identities=23%  Similarity=0.292  Sum_probs=318.3

Q ss_pred             HHHHHHHHHCCC-CHHHHHHHHHHHHHHCC--CCEEECCCCCCCCCCCHHHHHHHHHHHHCCC-----CCCCCCCCCHHH
Q ss_conf             367889873897-58999999999999869--9726656589749889999999999983887-----569987789899
Q gi|254780602|r    2 VFISNILRRVQP-SATLVAAQRVRDLRSKG--IDVLCLTAGEPDFDMPENVKYAVVRAMERGE-----TKYTAVAGISPL   73 (400)
Q Consensus         2 ~~~s~~~~~l~~-s~~~~~~~~~~~~~~~g--~~ii~l~~G~p~~~~p~~i~~a~~~al~~~~-----~~Y~~~~G~~~l   73 (400)
                      |.-|+++.+++| +.+.+|..+++|++++|  +|||+||+|+||||+|++|++|++++++++.     ++|+++.|+++|
T Consensus         1 ~~~~~~~~~~~~~y~f~~i~~~~~~~~~~~~~~dvI~L~iGePdf~~P~~i~~a~~~ai~~~~~~~~~~gY~~~~G~~~L   80 (402)
T TIGR03542         1 MKRNPHFLKLKSGYLFSEINRRVNEFRKKNPSASVIRLGIGDTTQPLPASVIEAFHEAVDELASEETYRGYGPEQGLPAL   80 (402)
T ss_pred             CCCCCCHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHH
T ss_conf             98586655578998608999999999985889985589899989998999999999999712246786777974064999


Q ss_pred             HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--------
Q ss_conf             999999864210133332233233454333322222223322322223333232222222222222222222--------
Q gi|254780602|r   74 REAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDMVALCGGIPVFVDTQ--------  145 (400)
Q Consensus        74 R~aia~~~~~~~g~~~~~e~I~it~G~~~~l~~~~~~~~~~Gd~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~--------  145 (400)
                      |++||+++   ++..+++|+|++|+|++++++. +.++++|||+|++++|+|+.|...+.++|++++.++..        
T Consensus        81 Reaia~~~---~~~~~~~d~I~vt~Ga~~~l~~-l~a~l~pGD~Vii~~P~y~~Y~~~~~~~g~~~~~~~~~~~~~~~~~  156 (402)
T TIGR03542        81 REAIAEND---YRGRISPEEIFISDGAKCDIGR-LQSIFGSDNTVAVQDPVYPAYVDTAVMTGRAGFADDTGQYRGIVYL  156 (402)
T ss_pred             HHHHHHHH---HCCCCCHHHEEECCCCHHHHHH-HHHHHCCCCEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCEEEC
T ss_conf             99999997---5689988996777782999999-9998399998998388881579999985995301356655672567


Q ss_pred             ---CCCCCCCHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf             ---22322210333100012212201211354210000123333211122333332011101221100000122332221
Q gi|254780602|r  146 ---QDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVN  222 (400)
Q Consensus       146 ---~~~~~~~d~~~l~~~i~~~~k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~  222 (400)
                         ++++|.+++.+     .+++|+|+|||||||||.||+++++++|+++| ++||++||+||+|++++|++..+.++.+
T Consensus       157 ~~~~e~~~~~~~~~-----~~ktk~iiln~P~NPTG~v~s~eel~~i~~la-~~~~i~iIsDEiY~~~~~~~~~~~s~~~  230 (402)
T TIGR03542       157 PCTKENGFIPELPE-----ERKIDIIYLCSPNNPTGTVLTKEQLKELVDYA-NAHGSLILFDAAYSAFISDPSIPHSIYE  230 (402)
T ss_pred             CCCHHHCCCCCCCC-----CCCCEEEEECCCCCCCCCCCCHHHHHHHHHHH-HHCCEEEEECCCHHHHHCCCCCCCCCEE
T ss_conf             67624385722234-----55735999899979887568999999999998-7507079602228876168987620111


Q ss_pred             CCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHH--------HHHHHHCCCCCCCCCCCCCCCCCCCCCCC-CCCCCC
Q ss_conf             112333225741465443223445444221101226--------87531001222332222222222223467-643222
Q gi|254780602|r  223 VEPSLYERTLVVNGVSKAYAMTGLRIGYAAGALSLI--------KSMIVLQGQQTSGACSIAQWAAVEALNGP-QDFVVN  293 (400)
Q Consensus       223 ~~~~~~~~~i~~~S~SK~~~~~G~RiG~~v~~~~li--------~~l~~~~~~~~~~~~~~~q~a~~~~l~~~-~~~~~~  293 (400)
                      + ++..+++|+++||||+|+|||||+||+++|++++        +.+.+.......+++.+.|.++.+++... ..+..+
T Consensus       231 ~-~~~~~~~I~i~S~SK~~~m~G~RiG~~i~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~q~a~~aal~~~~~~~~~~  309 (402)
T TIGR03542       231 I-EGAKECAIEINSFSKSLGFTGVRLGWTVVPKELTYADGHSVIQDWERRLCTTFNGASYPVQRAAEAAYAGEGLQPILE  309 (402)
T ss_pred             C-CCCCCEEEECCCCCCCCCCCCCCHHHEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHH
T ss_conf             3-665213673167624027834054021125877542279999999999876257755999999999973788599999


Q ss_pred             CCCCCCCCCCCHHHHHHCCCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCC--C
Q ss_conf             22211000000024553047760330274089986264102332113322489899999999873979983502289--9
Q gi|254780602|r  294 NRKIFEYRRDLCVAQLQGVPGIRYMIPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGH--G  371 (400)
Q Consensus       294 ~~~~~~~~r~~~~~~L~~~~g~~~~~p~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~--~  371 (400)
                      .++.|++||+.+.+.|++ .|+++..|+|+||+|++++.           ..+|++|+.+|++++||+++||+.||.  +
T Consensus       310 ~~~~~~~~~~~l~~~l~~-~g~~~~~~~ga~yl~~~~~~-----------~~~~~~~~~~ll~e~~V~vvPG~~FG~~g~  377 (402)
T TIGR03542       310 AISYYMENARILREALEA-AGFKVYGGENAPYLWVKTPE-----------GISSWDFFDFLLYQYHIVGTPGSGFGSSGE  377 (402)
T ss_pred             HHHHHHHHHHHHHHHHHH-CCCEEECCCCCEEEEEECCC-----------CCCHHHHHHHHHHHCCEEEECCHHHCCCCC
T ss_conf             999999999999998875-69576079973489787899-----------989899999999859999976447689998


Q ss_pred             CEEEEEEECCHHHHHHHHHHHHHHH
Q ss_conf             7289996299999999999999999
Q gi|254780602|r  372 PSIRISYAVSDAILEEACVRIKRFC  396 (400)
Q Consensus       372 ~~iRis~~~~~e~l~~al~rl~~~l  396 (400)
                      +||||||+.++|+|++|++||+++|
T Consensus       378 g~vRls~a~~~e~l~ea~~Rl~~~L  402 (402)
T TIGR03542       378 GFVRFSAFGKRENIVAACERIKHAL  402 (402)
T ss_pred             CEEEEEEECCHHHHHHHHHHHHHHC
T ss_conf             9699997299999999999999759


No 53 
>PRK05839 hypothetical protein; Provisional
Probab=100.00  E-value=0  Score=580.64  Aligned_cols=363  Identities=23%  Similarity=0.354  Sum_probs=317.1

Q ss_pred             HCCCCHHHHHHHHHHHHHHC-CCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf             38975899999999999986-99726656589749889999999999983887569987789899999999864210133
Q gi|254780602|r   10 RVQPSATLVAAQRVRDLRSK-GIDVLCLTAGEPDFDMPENVKYAVVRAMERGETKYTAVAGISPLREAIVEKFRRDNDLH   88 (400)
Q Consensus        10 ~l~~s~~~~~~~~~~~~~~~-g~~ii~l~~G~p~~~~p~~i~~a~~~al~~~~~~Y~~~~G~~~lR~aia~~~~~~~g~~   88 (400)
                      .++||++.++.+++++++++ |+|||+||+|+|||++|+.|++|++++.. +.++|+++.|.|+||++||+||++++|++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~dvi~L~iG~pdf~~P~~i~~A~~~~~~-~~~~Y~~~~G~peLR~Aia~~~~~~~g~~   80 (376)
T PRK05839          2 TFEPYPFEKLRALLKEITPNKKGELLDLTIGEPQFETPKFIQDALKNNAH-LLNKYPKSAGEEELREAQRGFFKRRFNIE   80 (376)
T ss_pred             CCCCCHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHH-CCCCCCCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf             99997299999999741404899848796889999989999999998644-48977998782999999999999986899


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCC
Q ss_conf             33223323345433332222222--3322322223333232222222222222222222223222103331000122122
Q gi|254780602|r   89 YTSDQIIVGTGAKHVIFNALMAT--VNMGDEVLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQAITPKTK  166 (400)
Q Consensus        89 ~~~e~I~it~G~~~~l~~~~~~~--~~~Gd~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~k  166 (400)
                      +++++|++|+|++++|+.+...+  .++||.|++++|+|+.|...+..+|++++.+|+.++++|.+|+++.+   .+++|
T Consensus        81 v~~~~I~vt~Ga~~al~~~~~~~l~~~~~~~i~~p~P~y~~y~~~~~~~g~~~v~v~l~~e~~~~~~l~~~~---~~~tk  157 (376)
T PRK05839         81 LKENELIPTFGTREVLFNFPQFVLFDKQNPTIAYPNPFYQIYEGAAIASRAKSLYMNLTKENDFTPSLNEKE---LQEVD  157 (376)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHCCCCCEEECCCCCCCCCCCCCHHH---HHCCC
T ss_conf             980249981788999999999984579998899789876325899986168632424640258886411876---50589


Q ss_pred             CEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCC----CCCCCEEEEECCCCCCCC
Q ss_conf             0121135421000012333321112233333201110122110000012233222111----233322574146544322
Q gi|254780602|r  167 WLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVE----PSLYERTLVVNGVSKAYA  242 (400)
Q Consensus       167 ~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~----~~~~~~~i~~~S~SK~~~  242 (400)
                      +|+|||||||||.+||++++++|+++|. +||++||+||+|+++.+ +.+++++....    ...++++|+++||||+|+
T Consensus       158 ~iilnsP~NPTG~v~s~eel~~i~~la~-~~~~~iisDEiY~~l~~-~~~~~s~~~~~~~~~~~~~~~vi~i~s~SK~~~  235 (376)
T PRK05839        158 LVILNSPNNPTGRTLSLEELISWVKLAL-KYDFILINDECYSEIYE-NTPPPSLLEASILAGNESFKNVLVINSISKRSS  235 (376)
T ss_pred             EEEECCCCCCCCCCCCHHHHHHHHHHHC-CCEEEEEEECCHHHHHC-CCCCCCHHHHHHHHCCCCCCCEEEEECCHHHCC
T ss_conf             9998899899882363999999987514-73699998068288637-999876888656514553253799923203201


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEECCC
Q ss_conf             34454442211012268753100122233222222222222346764322222211000000024553047760330274
Q gi|254780602|r  243 MTGLRIGYAAGALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQGVPGIRYMIPDG  322 (400)
Q Consensus       243 ~~G~RiG~~v~~~~li~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~~~~~L~~~~g~~~~~p~g  322 (400)
                      +||||+||+++++++++++.+++++..++.+.+.|.++..++.+ +++++.+++.|++|++.+.+.      +.+..|+|
T Consensus       236 ~~G~RiG~i~~~~~~i~~~~~~~~~~~~~~~~~~q~aa~~a~~~-~~~~~~~r~~~~~~~~~~~~~------l~~~~P~g  308 (376)
T PRK05839        236 APGLRSGFIAGDSSILKKYKAYRTYLGCASPLPLQKAAAVAWLD-DEHAEFFRNIYAKNLKLAREI------LGITIPPY  308 (376)
T ss_pred             CCCCCEEEEECCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHHHH------CCCCCCCE
T ss_conf             46540699978999999999865643678519999999999729-668999999999999999875------39888980


Q ss_pred             CEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCC----CCEEEEEEECCHHHHHHHHHHHHHHHHH
Q ss_conf             089986264102332113322489899999999873979983502289----9728999629999999999999999986
Q gi|254780602|r  323 AFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGH----GPSIRISYAVSDAILEEACVRIKRFCHS  398 (400)
Q Consensus       323 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~----~~~iRis~~~~~e~l~~al~rl~~~l~~  398 (400)
                      +||+|++++              ++++|+++|++++||+++||+.||.    ++||||||+.+++.|++|++||++|+++
T Consensus       309 ~fy~~~~~~--------------d~~~f~~~Ll~~~gV~v~PG~~FG~~~~g~~~vRls~~~~~e~L~eal~Rl~~f~e~  374 (376)
T PRK05839        309 TFYVWLPVQ--------------NDENFTKKLYQNEGIKVLPGSYLGRNGIGKDYVRLALVYDTPKLKKALERIKTYREN  374 (376)
T ss_pred             EEEEEEECC--------------CHHHHHHHHHHCCCEEEECCCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHH
T ss_conf             379986689--------------989999999980999997740017999989969999708899999999999999986


Q ss_pred             C
Q ss_conf             0
Q gi|254780602|r  399 L  399 (400)
Q Consensus       399 l  399 (400)
                      .
T Consensus       375 ~  375 (376)
T PRK05839        375 H  375 (376)
T ss_pred             C
T ss_conf             6


No 54 
>TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases; InterPro: IPR005958   This entry describes tyrosine aminotransferase (2.6.1.5 from EC) as found in animals and Trypanosoma cruzi (Euglenozoa). It is the first enzyme of a pathway of tyrosine degradation via homogentisate.  L-tyrosine + 2-oxoglutarate = 4-hydroxyphenylpyruvate + L-glutamate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway are included in this family. ; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding, 0006519 amino acid and derivative metabolic process.
Probab=100.00  E-value=0  Score=575.21  Aligned_cols=374  Identities=26%  Similarity=0.454  Sum_probs=341.1

Q ss_pred             HHHHHHHHHHHHHHC--CCCEEECCCCCCC----CCCCHHHHHHHHHHHHCCC-CCCCCCCCCHHHHHHHHHHHH-----
Q ss_conf             899999999999986--9972665658974----9889999999999983887-569987789899999999864-----
Q gi|254780602|r   15 ATLVAAQRVRDLRSK--GIDVLCLTAGEPD----FDMPENVKYAVVRAMERGE-TKYTAVAGISPLREAIVEKFR-----   82 (400)
Q Consensus        15 ~~~~~~~~~~~~~~~--g~~ii~l~~G~p~----~~~p~~i~~a~~~al~~~~-~~Y~~~~G~~~lR~aia~~~~-----   82 (400)
                      +++.+......--..  ++.||.|++|||+    |+|+++..||+.++++.+. ++|+|+.|.++.|+|||+||+     
T Consensus        20 ~iR~i~~~~~~~~~~~~~Kp~i~L~~GDPs~f~~lrT~~ea~~Av~~al~Sg~~NgYap~~G~~~AR~AvA~y~~~sfvh   99 (424)
T TIGR01265        20 PIRKIVDSLKVSPNPEDVKPVIPLSHGDPSVFGNLRTAPEAEEAVKDALRSGKFNGYAPSVGALAAREAVAEYLSNSFVH   99 (424)
T ss_pred             CHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCEEE
T ss_conf             28999998413788888830015888788877788887899999999983478567664368678889999996622212


Q ss_pred             -HHCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCHHHHHHC
Q ss_conf             -210133332233233454333322222223-32232222333323222222222222222222-222322210333100
Q gi|254780602|r   83 -RDNDLHYTSDQIIVGTGAKHVIFNALMATV-NMGDEVLIPRPYWVSYPDMVALCGGIPVFVDT-QQDDNFQVSPEKLEQ  159 (400)
Q Consensus        83 -~~~g~~~~~e~I~it~G~~~~l~~~~~~~~-~~Gd~Vlv~~P~y~~y~~~~~~~g~~~~~v~~-~~~~~~~~d~~~l~~  159 (400)
                       ++-...+++|+|++|+|++|||.+++.+++ +||+.||+|.|+||.|...++..|..++++++ -+|++|++|++.|++
T Consensus       100 n~~~~~~l~a~DV~ltsGCsqAIe~~I~aLA~~pG~NILvPRPGfP~Y~t~A~~~~lEvr~ydLdlPe~~WeiDL~~le~  179 (424)
T TIGR01265       100 NQRLPGKLSADDVVLTSGCSQAIEIVIEALAQNPGANILVPRPGFPLYDTRAAFSGLEVRLYDLDLPEKDWEIDLDGLES  179 (424)
T ss_pred             CCCCCCCCCCCCEEEECCCHHHHHHHHHHHHCCCCCCEECCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCEECHHHHHH
T ss_conf             57888875766448847722689999999726898835568777866899997718720002467888752364789987


Q ss_pred             CCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCC----CCCCCCCCCCCCCCCEEEEEC
Q ss_conf             0122122012113542100001233332111223333320111012211000001----223322211123332257414
Q gi|254780602|r  160 AITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRN----CQFSNIVNVEPSLYERTLVVN  235 (400)
Q Consensus       160 ~i~~~~k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~----~~~~s~~~~~~~~~~~~i~~~  235 (400)
                      ++++||++++++||+||||+||+++.|++|+++| ++++++||+||+|++++|.|    .+|.|++.+....+  +|+++
T Consensus       180 l~DekT~A~vv~NP~NPCGsVF~~~HL~k~~~~A-~kl~i~iIADEiY~~~Vf~dkDPn~~F~p~a~f~~~VP--vl~lG  256 (424)
T TIGR01265       180 LADEKTVAIVVINPSNPCGSVFSRDHLEKIAEVA-RKLGIPIIADEIYGHLVFGDKDPNAPFVPMASFASIVP--VLSLG  256 (424)
T ss_pred             HHCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHH-HHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCC--EEEEC
T ss_conf             6326876999847566788887888899999999-87098268776316414488978886223003578688--68863


Q ss_pred             CCCCCCCCCCCCCCCCCCHH--------HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCHH
Q ss_conf             65443223445444221101--------2268753100122233222222222222346-76432222221100000002
Q gi|254780602|r  236 GVSKAYAMTGLRIGYAAGAL--------SLIKSMIVLQGQQTSGACSIAQWAAVEALNG-PQDFVVNNRKIFEYRRDLCV  306 (400)
Q Consensus       236 S~SK~~~~~G~RiG~~v~~~--------~li~~l~~~~~~~~~~~~~~~q~a~~~~l~~-~~~~~~~~~~~~~~~r~~~~  306 (400)
                      |+||.|-+||||+||++...        .++..+.++.+ ...+++++.|.|+-..|+. +++|+...+..++++.++.+
T Consensus       257 gisKrW~VPGWRlGWi~~~Dp~gi~~~~k~~~gl~~~~~-~~~gP~Ti~QgALP~IL~~Tp~efF~~~~~~lk~na~l~y  335 (424)
T TIGR01265       257 GISKRWVVPGWRLGWIIVHDPHGILRDTKVLQGLKNVLQ-LILGPATIVQGALPDILENTPQEFFDKKISVLKENAELCY  335 (424)
T ss_pred             CHHCCCCCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHC-CCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
T ss_conf             101123277622432778888775444403389899842-3478157899999999851687688999999885188999


Q ss_pred             HHHHCCCCCEEEE-CCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCCCCEEEEEEECCHHHH
Q ss_conf             4553047760330-274089986264102332113322489899999999873979983502289972899962999999
Q gi|254780602|r  307 AQLQGVPGIRYMI-PDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGHGPSIRISYAVSDAIL  385 (400)
Q Consensus       307 ~~L~~~~g~~~~~-p~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~iRis~~~~~e~l  385 (400)
                      +.|++++|+.+.. |+|+||+|+++.-..      ...++||.+||++|++|+.|.+.||+.||.+||+||+|+++.+.+
T Consensus       336 ~~L~~ipg~~c~~KP~G~MY~mvkl~~~~------~~~ikdD~dFc~kL~~EESv~~LPG~~f~~pnw~Rit~t~~~~~~  409 (424)
T TIGR01265       336 EELKDIPGLTCPKKPEGSMYLMVKLELEL------LEEIKDDVDFCEKLVKEESVICLPGSAFGLPNWVRITITVPKSML  409 (424)
T ss_pred             HHHHCCCCCCCCCCCCCCEEEHHHCCHHH------CCCCCCCHHHHHHHHHHCCCEECCCEEECCCCCEEEEECCCHHHH
T ss_conf             99734887647648887500020101653------446464189999998737633546002559984799852767789


Q ss_pred             HHHHHHHHHHHHH
Q ss_conf             9999999999986
Q gi|254780602|r  386 EEACVRIKRFCHS  398 (400)
Q Consensus       386 ~~al~rl~~~l~~  398 (400)
                      +||++|||.||++
T Consensus       410 ~Ea~~Rik~FC~R  422 (424)
T TIGR01265       410 EEALERIKEFCER  422 (424)
T ss_pred             HHHHHHHHHHHHC
T ss_conf             9999999876303


No 55 
>PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed
Probab=100.00  E-value=0  Score=563.56  Aligned_cols=357  Identities=22%  Similarity=0.301  Sum_probs=312.8

Q ss_pred             HHHHHCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf             89873897589999999999998699726656589749889999999999983887569987789899999999864210
Q gi|254780602|r    6 NILRRVQPSATLVAAQRVRDLRSKGIDVLCLTAGEPDFDMPENVKYAVVRAMERGETKYTAVAGISPLREAIVEKFRRDN   85 (400)
Q Consensus         6 ~~~~~l~~s~~~~~~~~~~~~~~~g~~ii~l~~G~p~~~~p~~i~~a~~~al~~~~~~Y~~~~G~~~lR~aia~~~~~~~   85 (400)
                      .++.+|.+|++..+....++++++|.|||+|++|+||||+|+.|++|+.++.  +.++|++++|.++||++||+||++++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~l~iG~Pd~p~P~~v~~a~~~a~--~~~~Y~~~~G~~~LReAIa~~~~~~~   79 (364)
T PRK07865          2 PVSASLPDFPWDTLAPAKARAAAHPDGIVDLSVGTPVDPVPPVIQEALAAAA--DAPGYPTTAGTPELREAIVAWLARRY   79 (364)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHC--CCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf             7511289985999999999998789983985698998998999999999624--89998998887999999999999983


Q ss_pred             CCC-CCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCC
Q ss_conf             133-33223323345433332222222-3322322223333232222222222222222222223222103331000122
Q gi|254780602|r   86 DLH-YTSDQIIVGTGAKHVIFNALMAT-VNMGDEVLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQAITP  163 (400)
Q Consensus        86 g~~-~~~e~I~it~G~~~~l~~~~~~~-~~~Gd~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~  163 (400)
                      |+. +++++|++|+|++++|.++...+ ++|||+|++++|+|+.|...++++|++++.++            .+++....
T Consensus        80 g~~~~~~~~V~vt~Ga~~~l~~l~~~l~~~pGD~Vlip~P~Yp~y~~~~~~~g~~~v~~d------------~~~~~~~~  147 (364)
T PRK07865         80 GVTGLDPAAVLPVIGSKELVAWLPTLLGLGPGDVVVVPELAYPTYEVGARLAGATVVRAD------------SLTELGPQ  147 (364)
T ss_pred             CCCCCCCCEEEECCCHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHCCCEEEECC------------CHHHCCCC
T ss_conf             989899687997698899999999997079999899866786019999998198656107------------88775987


Q ss_pred             CCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCC--CCCCCCCEEEEECCCCCCC
Q ss_conf             12201211354210000123333211122333332011101221100000122332221--1123332257414654432
Q gi|254780602|r  164 KTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVN--VEPSLYERTLVVNGVSKAY  241 (400)
Q Consensus       164 ~~k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~--~~~~~~~~~i~~~S~SK~~  241 (400)
                      +++++++||||||||.+|+.+++++|+++| +++|++||+||+|++|+|++.++ +++.  +.++..+++|+++||||+|
T Consensus       148 ~~~li~lnsP~NPTG~v~s~e~l~~l~~la-~~~~i~vi~DE~Y~~l~~~~~~~-s~l~p~~~~~~~~~vi~i~S~SK~~  225 (364)
T PRK07865        148 TPALIWLNSPSNPTGRVLGVDHLRKVVAWA-RERGAVVASDECYLGLGWDAEPV-SVLDPRVCGGDHTGLLAVHSLSKQS  225 (364)
T ss_pred             CCEEEEECCCCCCCCCCCCHHHHHHHHHHH-HHCEEEEEECCCHHHHCCCCCCC-CCCCHHHCCCCCCCEEEEECCCCCC
T ss_conf             752999899969855117699999999997-76718998254257642589886-5138644277757579994365230


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEECC
Q ss_conf             23445444221101226875310012223322222222222234676432222221100000002455304776033027
Q gi|254780602|r  242 AMTGLRIGYAAGALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQGVPGIRYMIPD  321 (400)
Q Consensus       242 ~~~G~RiG~~v~~~~li~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~~~~~L~~~~g~~~~~p~  321 (400)
                      ++||||+||+++++++++++.+++++...+++.+.|.++..+|++ ++++.++++.|++||+.+.+.|++. |+++..|+
T Consensus       226 ~~~GlRiG~i~~~~~li~~l~~~~~~~~~~~~~~~Q~a~~aal~~-~~~~~~~~~~y~~rr~~l~~~L~~~-g~~~~~p~  303 (364)
T PRK07865        226 NLAGYRAGFVAGDPALVAELLAVRKHAGMMVPAPVQAAMVAALGD-DAHVREQRERYARRRAVLLPALEAA-GFTVDHSE  303 (364)
T ss_pred             CCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHHHHHHHC-CCEECCCC
T ss_conf             677744899967999999999999855023789999999999579-3999999999999999999999867-97662699


Q ss_pred             CCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCCC--CEEEEEEECCHHHHHHHHHHHHH
Q ss_conf             40899862641023321133224898999999998739799835022899--72899962999999999999999
Q gi|254780602|r  322 GAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGHG--PSIRISYAVSDAILEEACVRIKR  394 (400)
Q Consensus       322 g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~--~~iRis~~~~~e~l~~al~rl~~  394 (400)
                      ||||+|++.+             .++.++++.| .++||+++||+.||..  +||||+|+.++|+|++|++||+.
T Consensus       304 G~fylw~~~~-------------~~~~~~~~~l-~e~gV~v~PG~~Fg~~g~~~vRls~~~~~e~l~ea~~RLaA  364 (364)
T PRK07865        304 AGLYLWATRG-------------EDCWDTVAWL-AERGILVAPGDFYGPAGAQHVRVALTATDERIAAAVERLTA  364 (364)
T ss_pred             CEEEEEEECC-------------CCHHHHHHHH-HHCCEEEECCCCCCCCCCCEEEEEECCCHHHHHHHHHHHCC
T ss_conf             2279988889-------------9999999999-97998991887436899986999965989999999998683


No 56 
>TIGR03539 DapC_actino succinyldiaminopimelate transaminase. This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=100.00  E-value=0  Score=556.89  Aligned_cols=351  Identities=23%  Similarity=0.312  Sum_probs=308.9

Q ss_pred             CCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCC-CC
Q ss_conf             89758999999999999869972665658974988999999999998388756998778989999999986421013-33
Q gi|254780602|r   11 VQPSATLVAAQRVRDLRSKGIDVLCLTAGEPDFDMPENVKYAVVRAMERGETKYTAVAGISPLREAIVEKFRRDNDL-HY   89 (400)
Q Consensus        11 l~~s~~~~~~~~~~~~~~~g~~ii~l~~G~p~~~~p~~i~~a~~~al~~~~~~Y~~~~G~~~lR~aia~~~~~~~g~-~~   89 (400)
                      |+.|++..+.+.+++++++|.+||+||+|+||||+|+.|++|++++.+.  ++|+++.|.++||++||+||++++|+ .+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~vI~L~iG~Pd~p~p~~i~~a~~~a~~~--~~Y~~~~G~~eLReaia~~~~~~~g~~~~   78 (357)
T TIGR03539         1 LPDFPWDSLAPYKAKAASHPDGIVDLSVGTPVDPVPPLIRAALAAAADA--PGYPQTWGTPELREAIVDWLERRRGVPGL   78 (357)
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHCC--CCCCCCCCCHHHHHHHHHHHHHHCCCCCC
T ss_conf             9987599999999988868999288879999999899999999971247--99899847799999999999997199979


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCE
Q ss_conf             3223323345433332222222-332232222333323222222222222222222222322210333100012212201
Q gi|254780602|r   90 TSDQIIVGTGAKHVIFNALMAT-VNMGDEVLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQAITPKTKWL  168 (400)
Q Consensus        90 ~~e~I~it~G~~~~l~~~~~~~-~~~Gd~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~k~i  168 (400)
                      ++++|++|+|++++|..+...+ ++|||+|++++|+|+.|...+.+.|++++.++            .+++...+++|+|
T Consensus        79 ~~~~I~vt~G~~~al~~l~~~l~~~pGD~Vli~~P~y~~y~~~~~~~g~~~v~~d------------~~~~~~~~~~k~i  146 (357)
T TIGR03539        79 DPTAVLPVIGTKELVAWLPTLLGLGPGDTVVIPELAYPTYEVGALLAGATPVAAD------------DPTELDPVGPDLI  146 (357)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHCCCEEEECC------------CHHHCCCCCCEEE
T ss_conf             9575998688799999999997079999899788877008999998599898238------------8666797785499


Q ss_pred             EECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCC-CCCCCCCCEEEEECCCCCCCCCCCCC
Q ss_conf             21135421000012333321112233333201110122110000012233222-11123332257414654432234454
Q gi|254780602|r  169 FLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIV-NVEPSLYERTLVVNGVSKAYAMTGLR  247 (400)
Q Consensus       169 ~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~-~~~~~~~~~~i~~~S~SK~~~~~G~R  247 (400)
                      ++||||||||.+|+++++++|+++| +++|++||+||+|.+++|++.++..+. ....+..+++|+++||||+|++||||
T Consensus       147 ~l~~P~NPTG~v~s~~~l~~l~~~a-~~~~i~visDEiY~~~~~~~~~~s~l~~~~~~~~~~~~i~~~S~SK~~~~~G~R  225 (357)
T TIGR03539       147 WLNSPGNPTGRVLSVDELRAIVAWA-RERGAVVASDECYLELGWEGRPVSILDPRVCGGDHTGLLAVHSLSKRSNLAGYR  225 (357)
T ss_pred             EECCCCCCCHHCCCHHHHHHHHHHC-CCCEEEEECHHHHHHHCCCCCCCCCCCHHHCCCCCCCEEEEEECCCCCCCCCCE
T ss_conf             9899989623208288999998732-055589952332476535898843028645376757679996153100455612


Q ss_pred             CCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEECCCCEEEE
Q ss_conf             44221101226875310012223322222222222234676432222221100000002455304776033027408998
Q gi|254780602|r  248 IGYAAGALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQGVPGIRYMIPDGAFYLY  327 (400)
Q Consensus       248 iG~~v~~~~li~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~~~~~L~~~~g~~~~~p~g~~y~~  327 (400)
                      +||+++++++++++.+++++...+++.+.|.++.++|.+ ++|+.+.++.|++||+.+.+.|++. |+++.+|+||||+|
T Consensus       226 iG~~~~~~~li~~l~~~~~~~~~~~~~~~q~a~~~al~~-~~~~~~~~~~~~~rr~~l~~~L~~~-g~~~~~p~g~~y~~  303 (357)
T TIGR03539       226 AGFVAGDPALVAELLTVRKHAGLMVPAPVQAAMVAALGD-DGHVAEQKARYAARRAQLKPALEKA-GFRIDHSEAGLYLW  303 (357)
T ss_pred             EEEEECCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHHHHHHHC-CCEECCCCEEEEEE
T ss_conf             899967999999999999856777889999999999569-2789999999999999999999857-97762688069998


Q ss_pred             EECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCC--CCEEEEEEECCHHHHHHHHHHH
Q ss_conf             6264102332113322489899999999873979983502289--9728999629999999999999
Q gi|254780602|r  328 PSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGH--GPSIRISYAVSDAILEEACVRI  392 (400)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~--~~~iRis~~~~~e~l~~al~rl  392 (400)
                      ++.+             .+++++++.| .++||+++||+.||.  ++||||+|+.++|+|++|++||
T Consensus       304 ~~~~-------------~~~~~~~~~l-~e~gV~v~PG~~Fg~~g~~~vRis~~~~~e~l~eal~Rl  356 (357)
T TIGR03539       304 ATRG-------------EDAWDTVDRL-AELGILVAPGDFYGPAGSQHVRVALTATDERIAAAVARL  356 (357)
T ss_pred             EECC-------------CCHHHHHHHH-HHCCEEEECCCCCCCCCCCEEEEEECCCHHHHHHHHHHC
T ss_conf             7589-------------9999999999-969989947874478999979999729999999999857


No 57 
>PRK06225 aspartate aminotransferase; Provisional
Probab=100.00  E-value=0  Score=552.52  Aligned_cols=366  Identities=22%  Similarity=0.344  Sum_probs=323.6

Q ss_pred             HHCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCC-CCCCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf             73897589999999999998699726656589749889999999999983887-56998778989999999986421013
Q gi|254780602|r    9 RRVQPSATLVAAQRVRDLRSKGIDVLCLTAGEPDFDMPENVKYAVVRAMERGE-TKYTAVAGISPLREAIVEKFRRDNDL   87 (400)
Q Consensus         9 ~~l~~s~~~~~~~~~~~~~~~g~~ii~l~~G~p~~~~p~~i~~a~~~al~~~~-~~Y~~~~G~~~lR~aia~~~~~~~g~   87 (400)
                      ++++||.+..+...++++.+.. |||+|++|+|+|+||+.|++|+.++++++. ++|++..|+++||++||+++    | 
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~-diI~L~~~e~~~~~p~~v~~a~~~~~~~~~~~~Y~~~~g~~~Lr~aia~~~----~-   74 (375)
T PRK06225          1 EKVPPSGADTINDFFDELFKKP-ELIWLGQNTNHLHPHPEVRDAMIRAAKEGEYNKYAPPEGFEELRELILADL----G-   74 (375)
T ss_pred             CCCCCCHHHHHHHHHHHHHCCC-CEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH----C-
T ss_conf             9979871589999999971799-906899998998857999999999964898788799635899999999986----8-


Q ss_pred             CCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCHHHHHHCCCCCCC
Q ss_conf             33322-3323345433332222222332232222333323222222222222222222-222322210333100012212
Q gi|254780602|r   88 HYTSD-QIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDMVALCGGIPVFVDT-QQDDNFQVSPEKLEQAITPKT  165 (400)
Q Consensus        88 ~~~~e-~I~it~G~~~~l~~~~~~~~~~Gd~Vlv~~P~y~~y~~~~~~~g~~~~~v~~-~~~~~~~~d~~~l~~~i~~~~  165 (400)
                       ++++ +|++|+|++++|.++++++++|||+|++++|+|+.|...++..|++++.+|+ .++++|.+|+|++++++++++
T Consensus        75 -~~~~~ei~vt~G~~~~l~~~~~a~~~pGD~vl~~~P~y~~y~~~~~~~g~~~~~vpl~~~~~~~~~d~d~l~~~i~~~t  153 (375)
T PRK06225         75 -LDDDFDALVTAGATESLYLVIRAFLSPGTNTVTSDPGYKIIDNFANRFGAEVIEVPIYSEECDYKLTPEALKENVDEET  153 (375)
T ss_pred             -CCCCCEEEECCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHCCCEEEECCCCCCCCCCCCCHHHHHHHCCCCC
T ss_conf             -8999749982788999999999977998989984898335999999849905745766854688789999996288888


Q ss_pred             CCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCC
Q ss_conf             20121135421000012333321112233333201110122110000012233222111233322574146544322344
Q gi|254780602|r  166 KWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTG  245 (400)
Q Consensus       166 k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~~~G  245 (400)
                      |++++||||||||.+++.+++++|+++| ++++++||+||+|.++.++.  +.+ ...   ..+++|+++||||+|+|||
T Consensus       154 k~i~l~nPnNPTG~v~s~~~l~~l~~~a-~~~~i~ii~DE~Y~~f~~~~--~~~-~~~---~~~~~iv~~S~SK~~~~~G  226 (375)
T PRK06225        154 KLIVLIDPLNPLGSSYTREEIKEFAEIA-RDNDAYLVHDCTYRDFAREH--TLA-AEY---APEGTVTIYSFSKIFGLAG  226 (375)
T ss_pred             CEEEECCCCCCCCCCCCHHHHHHHHHHH-HHCCCCCCCHHHHHHCCCCC--CCH-HHH---CCCCEEEECCCCHHCCCHH
T ss_conf             2899829989988878899999999999-86277000022133206788--723-453---7787599823605135734


Q ss_pred             CCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEE-EECCCCE
Q ss_conf             544422110122687531001222332222222222223467643222222110000000245530477603-3027408
Q gi|254780602|r  246 LRIGYAAGALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQGVPGIRY-MIPDGAF  324 (400)
Q Consensus       246 ~RiG~~v~~~~li~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~~~~~L~~~~g~~~-~~p~g~~  324 (400)
                      ||+||+++++++++++.+.+. ...+++.+.|.+++++|...++|++++++.++++|+.+.+.+++++|+.+ ..|.+|+
T Consensus       227 ~RiG~~i~~~~~i~~l~~~~~-~~~~~~~~~q~aa~aal~~~~~~~~~~~~~~~~~r~~~~~~l~~l~g~~~~~~p~~g~  305 (375)
T PRK06225        227 LRIGAVVAAPDLLEQVAKYVV-SDLGANVIAQEAAIAGLKVKSEWIERIRREDFRNQALIKEAVDEIEGVFLPVYPSHAN  305 (375)
T ss_pred             HHHHHHCCCHHHHHHHHHHHC-CCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCE
T ss_conf             405141079999999998743-8788789999999999848999999999999999999999985373885167079745


Q ss_pred             EEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCC---CCEEEEEEECCHHHHHHHHHHHHHHHHHCC
Q ss_conf             9986264102332113322489899999999873979983502289---972899962999999999999999998609
Q gi|254780602|r  325 YLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGH---GPSIRISYAVSDAILEEACVRIKRFCHSLQ  400 (400)
Q Consensus       325 y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~---~~~iRis~~~~~e~l~~al~rl~~~l~~l~  400 (400)
                      |+|+++.+.          ..++.+|++.|+ ++||+++||..|+.   ++||||||++++|++++|++||++++++||
T Consensus       306 f~~~~~~~~----------g~~~~~~~~~l~-e~gV~v~pG~~~~~~~g~~~iRis~~~~~e~l~~a~~rl~~~l~~lr  373 (375)
T PRK06225        306 MLVIDTSEA----------GIRPEDLVEYLL-ERKIFVRQGTYTSKRFGDRFIRVSFSIPREWVERFCEEFPDVVATLR  373 (375)
T ss_pred             EEEEECCCC----------CCCHHHHHHHHH-HCCEEEECCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHH
T ss_conf             999986688----------989999999999-78909968986788789992999970489999999999999999864


No 58 
>TIGR03537 DapC succinyldiaminopimelate transaminase. Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.
Probab=100.00  E-value=0  Score=547.11  Aligned_cols=343  Identities=26%  Similarity=0.431  Sum_probs=311.6

Q ss_pred             CEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCC-CCCCCCCCCCCCCCCCCC
Q ss_conf             7266565897498899999999999838875699877898999999998642101333322-332334543333222222
Q gi|254780602|r   32 DVLCLTAGEPDFDMPENVKYAVVRAMERGETKYTAVAGISPLREAIVEKFRRDNDLHYTSD-QIIVGTGAKHVIFNALMA  110 (400)
Q Consensus        32 ~ii~l~~G~p~~~~p~~i~~a~~~al~~~~~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~e-~I~it~G~~~~l~~~~~~  110 (400)
                      +||+|++|+|+||+|+.+++|+++++.+ .++|+++.|+++||++||+|+++++|+++++| +|++|+|++++|++++++
T Consensus         1 ~ii~l~~g~P~~p~P~~i~~al~~a~~~-~~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~d~~I~~t~Ga~~al~~~~~~   79 (350)
T TIGR03537         1 RLFDFGTGDPKEPTPPIIRNALKNAVPE-VSQYPSAAGTKALRDAISGWFERRFGVKLDPDAQVLPSAGSKEAIFHFPLV   79 (350)
T ss_pred             CEEECCCCCCCCCCCHHHHHHHHHHCCC-CCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHH
T ss_conf             9578769899999879999999996021-589989847499999999999998689989787799878838999999999


Q ss_pred             CCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCC
Q ss_conf             2332232---2223333232222222222222222222223222103331000122122012113542100001233332
Q gi|254780602|r  111 TVNMGDE---VLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLR  187 (400)
Q Consensus       111 ~~~~Gd~---Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~k~i~l~nP~NPTG~v~s~~~l~  187 (400)
                      +++|||+   |++++|+|+.|...+...|++++.+|++++++|.+|++++++.+.+++|++++||||||||.+|++++++
T Consensus        80 ~~~~gd~~~~Vlv~~P~y~~y~~~~~~~g~~~~~v~l~~~~g~~~d~e~l~~~~~~~~~~i~l~nP~NPTG~v~s~~~l~  159 (350)
T TIGR03537        80 FIDPEEDRRRVIFGTPGYPVYERGALFAGGEPTPVKLKEEDGFLLRLEKVDKEILKETKIVWINYPHNPTGAVAPRSYLE  159 (350)
T ss_pred             HCCCCCCCCEEEEECCCCCCHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHCCCCCEEEEECCCCCCCCCCCCHHHHH
T ss_conf             73888778769994698730699999769989997535544887799999974666871999899989836476999999


Q ss_pred             CCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf             11122333332011101221100000122332221112333225741465443223445444221101226875310012
Q gi|254780602|r  188 ALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTGLRIGYAAGALSLIKSMIVLQGQ  267 (400)
Q Consensus       188 ~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~v~~~~li~~l~~~~~~  267 (400)
                      +|+++| ++++++||+||+|.++.|++.+ .+....   ..+++|+++||||+|++||||+||+++++++++.+.+++.+
T Consensus       160 ~l~~~a-~~~~~~vi~DE~Y~~l~~~~~~-~~~~~~---~~~~~i~~~S~SK~~~~pGlR~G~~~~~~~li~~~~~~~~~  234 (350)
T TIGR03537       160 ETIAIC-QEHNIILCSDECYTEIYFGEPP-HSALEV---GMENVLAFHSLSKRSGMTGYRSGFVAGDEKLISFLKKLRAN  234 (350)
T ss_pred             HHHHHH-HCCCEEEEEEHHHHHHHCCCCC-CCHHHH---CCCCEEEEECCCCCCCCCCCEEEEEECCHHHHHHHHHHHHH
T ss_conf             999863-2369079843122455348998-775563---46877999667545046775599997899999999998620


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCH
Q ss_conf             22332222222222223467643222222110000000245530477603302740899862641023321133224898
Q gi|254780602|r  268 QTSGACSIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQGVPGIRYMIPDGAFYLYPSCQDLIGKKSPSGDVIRTD  347 (400)
Q Consensus       268 ~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~~~~~L~~~~g~~~~~p~g~~y~~~~~~~~~~~~~~~~~~~~~~  347 (400)
                      ...+.+.+.|.++..++. .+.|+.+.++.|+++|+.+.+.|++ .|+++..|+||||+|+++++           ..++
T Consensus       235 ~~~~~~~~~q~a~~~~~~-~~~~~~~~~~~~~~~r~~~~~~l~~-~g~~~~~p~g~~~~w~~~~~-----------~~~~  301 (350)
T TIGR03537       235 FGVASPDFVQAAAKAAWS-DDSHVIERRKIFRRKRDLFLEFFNK-KGLEYLYPDATFYLWVKVPN-----------GISS  301 (350)
T ss_pred             CCCCHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHHHHHHHH-CCCEEECCCCEEEEEEECCC-----------CCCH
T ss_conf             677728999999999956-8099999999999999999999864-89888268822599897999-----------9899


Q ss_pred             HHHHHHHHHHCCEEEECCCCCCC--CCEEEEEEECCHHHHHHHHHHHHH
Q ss_conf             99999999873979983502289--972899962999999999999999
Q gi|254780602|r  348 LDFVNGLLEIEKVAVVQGSSFGH--GPSIRISYAVSDAILEEACVRIKR  394 (400)
Q Consensus       348 ~~~~~~Ll~~~gV~v~pG~~Fg~--~~~iRis~~~~~e~l~~al~rl~~  394 (400)
                      .+|+.+|+ ++||+++||+.||.  ++|+||+|+.+.|+++||++||++
T Consensus       302 ~~~~~~ll-~~gV~v~pG~~Fg~~~~~~~Rl~~~~~~e~l~ealrrl~~  349 (350)
T TIGR03537       302 KDYALRLL-ENGIVVAPGENFGSGEEGYVRVALVPTLEECEEALRIWES  349 (350)
T ss_pred             HHHHHHHH-HCCEEEECCHHHCCCCCCEEEEEEECCHHHHHHHHHHHHC
T ss_conf             99999999-7998997673118999986999972899999999999861


No 59 
>pfam00155 Aminotran_1_2 Aminotransferase class I and II.
Probab=100.00  E-value=0  Score=536.30  Aligned_cols=345  Identities=27%  Similarity=0.366  Sum_probs=314.5

Q ss_pred             CCEEECCCCCCCCCCCHHHHHHHHHHHHCCC-CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCC-CCCCCCCCCCCCCCCC
Q ss_conf             9726656589749889999999999983887-5699877898999999998642101333322-3323345433332222
Q gi|254780602|r   31 IDVLCLTAGEPDFDMPENVKYAVVRAMERGE-TKYTAVAGISPLREAIVEKFRRDNDLHYTSD-QIIVGTGAKHVIFNAL  108 (400)
Q Consensus        31 ~~ii~l~~G~p~~~~p~~i~~a~~~al~~~~-~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~e-~I~it~G~~~~l~~~~  108 (400)
                      .|+|+|++|+|++++||.|++|++++++.+. ++|++++|+++||++||+|+++++|+++++| +|++|+|+++++.+++
T Consensus         1 ~d~i~l~~~~~~~~~~p~v~~A~~~a~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~~~~~~~e~~I~~t~G~~~~l~~~~   80 (351)
T pfam00155         1 TDKINLGSNEYLGDTLPAVAKAEKDALAGGTRNLYGPTDGLPELREALAKFLGRSPVLKLDREAAVVFGSGAGANIEALI   80 (351)
T ss_pred             CCEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCHHHHHHHHH
T ss_conf             97089338999999889999999999749999807981878999999999860102999994748998113999999999


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCC
Q ss_conf             22233223222233332322222222222222222222232221033310001221220121135421000012333321
Q gi|254780602|r  109 MATVNMGDEVLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRA  188 (400)
Q Consensus       109 ~~~~~~Gd~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~k~i~l~nP~NPTG~v~s~~~l~~  188 (400)
                      +++++|||.|++++|+|+.|...++.+|+++++++++++++|.+|+++|++++++++|+|++||||||||.+++.+++++
T Consensus        81 ~~l~~~gd~Vli~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~P~NPTG~~~~~~~l~~  160 (351)
T pfam00155        81 FLLANPGDAILVPAPTYASYIRIARLAGGEVVRYPLYDSNDFHLDFDALEAALKEKPKVVLHESPHNPTGTVAPLEELEK  160 (351)
T ss_pred             HHHCCCCCEEEECCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHCCCCCEEEEECCCCCCCCCCCCHHHHHH
T ss_conf             99669949999889986889999998399778984564347798999999754159869998899198777768899999


Q ss_pred             CCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCC
Q ss_conf             11223333320111012211000001223322211123332257414654432234454442211012268753100122
Q gi|254780602|r  189 LADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTGLRIGYAAGALSLIKSMIVLQGQQ  268 (400)
Q Consensus       189 i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~v~~~~li~~l~~~~~~~  268 (400)
                      |+++| ++++++||+||+|.++.|++..+.+...... ..+++|+++||||+|++||||+||+++++++++.+.+.+.. 
T Consensus       161 l~~~a-~~~~~~ii~DE~Y~~~~~~~~~~~~~~~~~~-~~~~~i~~~S~SK~~~~~G~R~G~i~~~~~~i~~l~~~~~~-  237 (351)
T pfam00155       161 LLDLA-KEHNILLLVDEAYAGFVFGSPDAVATRALLA-EGPNLLVVGSFSKAFGLAGWRVGYILGNAAVISQLRKLARP-  237 (351)
T ss_pred             HHHHH-CCCCEEEEEECCCCCEECCCCCCCCHHHHCC-CCCCEEEEECCHHHCCCCCCCEEEEEECHHHHHHHHHHHCC-
T ss_conf             98653-0288899982663331527988861333114-57867999136152379351559999899999999997166-


Q ss_pred             CCCCCCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCC
Q ss_conf             2332222222222223467---6432222221100000002455304776033027408998626410233211332248
Q gi|254780602|r  269 TSGACSIAQWAAVEALNGP---QDFVVNNRKIFEYRRDLCVAQLQGVPGIRYMIPDGAFYLYPSCQDLIGKKSPSGDVIR  345 (400)
Q Consensus       269 ~~~~~~~~q~a~~~~l~~~---~~~~~~~~~~~~~~r~~~~~~L~~~~g~~~~~p~g~~y~~~~~~~~~~~~~~~~~~~~  345 (400)
                       .+.+++.|.++.+++...   .+|+.+.++.|+++|+.+.+.|++. |+++.+|+||||+|++++.            .
T Consensus       238 -~~~s~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~-g~~~~~p~g~~~~~~~~~~------------~  303 (351)
T pfam00155       238 -FYSSTHLQAAAAAALSDPLLVASELEEMRQRIKERRDYLRDGLEAA-GLSVLPSQAGFFLLTGLDP------------E  303 (351)
T ss_pred             -CCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCEECCCCCEEEEEEECCC------------C
T ss_conf             -8747899999999995845568999999999999999999999878-9857279944999997873------------2


Q ss_pred             CHHHHHHHHHHHCCEEEECCCCCCCCCEEEEEEE-CCHHHHHHHHHHH
Q ss_conf             9899999999873979983502289972899962-9999999999999
Q gi|254780602|r  346 TDLDFVNGLLEIEKVAVVQGSSFGHGPSIRISYA-VSDAILEEACVRI  392 (400)
Q Consensus       346 ~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~iRis~~-~~~e~l~~al~rl  392 (400)
                      ++.+|+.+|++++||+++||+.||.++|+||||+ .++|+++++++||
T Consensus       304 ~~~~~~~~Ll~~~gV~v~pG~~fg~~~~iRis~a~~s~e~i~~~~~rl  351 (351)
T pfam00155       304 TAKELAQVLLEEVGVYVTPGSSPGVPGWLRITVAGGTEEELEELLEAI  351 (351)
T ss_pred             CHHHHHHHHHHCCCEEEECCCCCCCCCEEEEEECCCCHHHHHHHHHHC
T ss_conf             299999999975989997788889999089981789999999999419


No 60 
>KOG0257 consensus
Probab=100.00  E-value=0  Score=540.06  Aligned_cols=384  Identities=28%  Similarity=0.457  Sum_probs=340.4

Q ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEE-CCCCCCCCCCCHHHHHHHHHHHHCC-CCCCCCCCCCHHHHHHHHHHH
Q ss_conf             78898738975899999999999986997266-5658974988999999999998388-756998778989999999986
Q gi|254780602|r    4 ISNILRRVQPSATLVAAQRVRDLRSKGIDVLC-LTAGEPDFDMPENVKYAVVRAMERG-ETKYTAVAGISPLREAIVEKF   81 (400)
Q Consensus         4 ~s~~~~~l~~s~~~~~~~~~~~~~~~g~~ii~-l~~G~p~~~~p~~i~~a~~~al~~~-~~~Y~~~~G~~~lR~aia~~~   81 (400)
                      -++++...+|+.+-++.+.+.|.+     +.+ |++|+||+|+|+.|.+++++++++. .++|+...|+|+||+++++.|
T Consensus         8 ~~~~l~~~~~~vw~e~~~la~e~~-----~~~~LgqGfp~~~~P~fv~ea~~~~~~~~~~~qYt~~~G~p~L~~aL~k~~   82 (420)
T KOG0257           8 RNRNLSTSKPYVWTEINRLAAEHK-----VPNPLGQGFPDFPPPKFVTEAAKNAAKEPSTNQYTRGYGLPQLRKALAKAY   82 (420)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHCC-----CCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHCCCCCCCCCHHHHHHHHHHH
T ss_conf             300025557717999999998627-----987466788899974899999998742530022346679467899999998


Q ss_pred             HHHCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC------CCCCCCCHH
Q ss_conf             4210133332-233233454333322222223322322223333232222222222222222222------223222103
Q gi|254780602|r   82 RRDNDLHYTS-DQIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDMVALCGGIPVFVDTQ------QDDNFQVSP  154 (400)
Q Consensus        82 ~~~~g~~~~~-e~I~it~G~~~~l~~~~~~~~~~Gd~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~------~~~~~~~d~  154 (400)
                      +..+|...++ ++|++|+|+.++|+.++++++++||+|++.+|+|+.|.....++|++++++++.      ....|.+|+
T Consensus        83 se~~~~~~~~~~eVlVT~GA~~ai~~~~~~l~~~GDeVii~eP~fd~Y~~~~~maG~tpv~v~~~~~~g~~~s~~~~~D~  162 (420)
T KOG0257          83 SEFYGGLLDPDDEVLVTAGANEAISSALLGLLNPGDEVIVFEPFFDCYIPQVVMAGGTPVFVPLKPKEGNVSSSDWTLDP  162 (420)
T ss_pred             HHHHCCCCCCCCCEEEECCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCH
T ss_conf             88735555786657995382378999999871899879993575122456776448842440565344665576666896


Q ss_pred             HHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf             33100012212201211354210000123333211122333332011101221100000122332221112333225741
Q gi|254780602|r  155 EKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVV  234 (400)
Q Consensus       155 ~~l~~~i~~~~k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~  234 (400)
                      ++++.++++|||+|++||||||||.++|+++|++|+++|. +||++||+||+|.+++|++.+|++++++ |++++|+|++
T Consensus       163 ~~le~~~t~kTk~Ii~ntPhNPtGkvfsReeLe~ia~l~~-k~~~lvisDevYe~~v~d~~~h~r~asl-Pgm~ertitv  240 (420)
T KOG0257         163 EELESKITEKTKAIILNTPHNPTGKVFSREELERIAELCK-KHGLLVISDEVYEWLVYDGNKHIRIASL-PGMYERTITV  240 (420)
T ss_pred             HHHHHHCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHH-HCCEEEEEHHHHHHHHHCCCCCEEEECC-CCHHHEEEEE
T ss_conf             9998643677647999489998673057999999999998-7897999825747882178765146227-7622447885


Q ss_pred             CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC--------CCCCCCCCCCCCCCCCHH
Q ss_conf             465443223445444221101226875310012223322222222222234676--------432222221100000002
Q gi|254780602|r  235 NGVSKAYAMTGLRIGYAAGALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGPQ--------DFVVNNRKIFEYRRDLCV  306 (400)
Q Consensus       235 ~S~SK~~~~~G~RiG~~v~~~~li~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~--------~~~~~~~~~~~~~r~~~~  306 (400)
                      +||||+|+++|||+||+++|+.++.....++++....++++.|.|.+.++...+        .++.++.+.|++||+.+.
T Consensus       241 gS~gKtf~~TGWrlGW~igp~~L~~~~~~vh~~~~~~~~Tp~q~A~a~a~~~~~~~~~p~~~y~~~~~~~~y~~krdil~  320 (420)
T KOG0257         241 GSFGKTFGVTGWRLGWAIGPKHLYSALFPVHQNFVFTCPTPIQEASAAAFALELACLQPGGSYFITELVKEYKEKRDILA  320 (420)
T ss_pred             CCCCCEEEEEEEEEEEEECHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             14521000034565346454876464787864552026807789999987400201687620689987999999999999


Q ss_pred             HHHHCCCCCEEEECCCCEEEEEECCCCCCCCCCCCC-CCCCHHHHHHHHHHHCCEEEECCCCCCCCC-------EEEEEE
Q ss_conf             455304776033027408998626410233211332-248989999999987397998350228997-------289996
Q gi|254780602|r  307 AQLQGVPGIRYMIPDGAFYLYPSCQDLIGKKSPSGD-VIRTDLDFVNGLLEIEKVAVVQGSSFGHGP-------SIRISY  378 (400)
Q Consensus       307 ~~L~~~~g~~~~~p~g~~y~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~-------~iRis~  378 (400)
                      +.|.++ |+++..|+|+||+|+|++........... ...+|..|+.+|+++.||.++|++.||.++       ++|++|
T Consensus       321 k~L~~l-g~~v~~p~gayyl~adfs~~~~~~~~~~~~~~~~d~~~~~wl~~~~Gv~~IP~saF~s~~~~~~~~~~~r~~~  399 (420)
T KOG0257         321 KALEEL-GLKVTGPEGAYYLWADFSLAKSWPFFEEILEKPDDFKFVRWLIKEGGVVVIPPSAFGSREHIKVAERLVRFCF  399 (420)
T ss_pred             HHHHHC-CCCCCCCCCCEEEEEECCCCCCCCCCHHHCCCCCCEEEEHHHHCCCCEEEECCHHCCCCHHHHHHHHHHHHHH
T ss_conf             999866-9852268984389995465345786222225777336452130558679947211378355678877788887


Q ss_pred             ECCHHHHHHHHHHHHHH
Q ss_conf             29999999999999999
Q gi|254780602|r  379 AVSDAILEEACVRIKRF  395 (400)
Q Consensus       379 ~~~~e~l~~al~rl~~~  395 (400)
                      +...+.|+.|.+||+++
T Consensus       400 ~k~~~~L~~a~e~l~~~  416 (420)
T KOG0257         400 CKADETLRKAIERLKKL  416 (420)
T ss_pred             HHHHHHHHHHHHHHHHH
T ss_conf             75499999999987652


No 61 
>PRK07324 transaminase; Validated
Probab=100.00  E-value=0  Score=532.26  Aligned_cols=328  Identities=20%  Similarity=0.348  Sum_probs=302.6

Q ss_pred             HHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             99999983887569987789899999999864210133332233233454333322222223322322223333232222
Q gi|254780602|r   51 YAVVRAMERGETKYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPD  130 (400)
Q Consensus        51 ~a~~~al~~~~~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l~~~~~~~~~~Gd~Vlv~~P~y~~y~~  130 (400)
                      +++.+++.++.++|+++.|.|+||++||++|.     ++++|||++|+|+++|+++++.++++|||+|++++|+|+.|..
T Consensus        45 ~~~~~~l~~~~l~Y~~~~G~~~LR~~Ia~~y~-----~v~~d~IlvT~Ga~~Al~l~~~~l~~pGD~Viv~~P~Y~~~~~  119 (373)
T PRK07324         45 EAFYSQLGDKKLTYGWIEGSPEFKEAVASLYQ-----NVKPDNILQTNGATGANHLVLYALIEPGDHVISVYPTYQQLYD  119 (373)
T ss_pred             HHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHC-----CCCHHHEEECCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHH
T ss_conf             89999872377777888898999999999866-----9986788986878999999999975999989988998577999


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCC
Q ss_conf             22222222222222222322210333100012212201211354210000123333211122333332011101221100
Q gi|254780602|r  131 MVALCGGIPVFVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHI  210 (400)
Q Consensus       131 ~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l  210 (400)
                      +++..|++++.++++++++|.+|+++|+++++++||++++||||||||.++|++++++|+++| ++||++||+||+|.++
T Consensus       120 ~~~~~G~~v~~~~l~~~~~~~~Dl~~l~~~i~~~tkliil~nP~NPTG~v~s~e~l~~l~~la-~~~~i~iisDEiY~~l  198 (373)
T PRK07324        120 IPESLGAEVDYWKLREENGWLPDLDELKRLVRPNTKLICINNANNPTGALMDRAFLEEIVEIA-KSVDAYVLSDEVYRPL  198 (373)
T ss_pred             HHHHCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHH-HCCCEEEEECCCCCCC
T ss_conf             999839876540767225988799999961887876999799979889778899999999875-4178599812554223


Q ss_pred             CCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             00012233222111233322574146544322344544422110122687531001222332222222222223467643
Q gi|254780602|r  211 VYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTGLRIGYAAGALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGPQDF  290 (400)
Q Consensus       211 ~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~v~~~~li~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~  290 (400)
                      .+++ +++|+.+    .++++|+++||||+|++||||+||+++|+++++++.+.++++..+++.+.|.++..++++.+.+
T Consensus       199 ~~~~-~~~s~~~----~~~~~I~~~S~SK~~~l~GlRiGwiv~~~~li~~~~~~~~~~~i~~~~~~~~~a~~al~~~~~~  273 (373)
T PRK07324        199 DEEG-SFPSIAD----LYEKGISTNSLSKTYSLPGIRVGWIATNEEVIDIFRKYRDYTMICAGVFDDMLASLALEHRDAI  273 (373)
T ss_pred             CCCC-CCCHHHH----HHHCEEEECCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCHHHH
T ss_conf             5797-5010565----7557589715411256777437999669999999999986535566569999999999683999


Q ss_pred             CCCCCCCCCCCCCCHHHHHHCCCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCC
Q ss_conf             22222211000000024553047760330274089986264102332113322489899999999873979983502289
Q gi|254780602|r  291 VVNNRKIFEYRRDLCVAQLQGVPGIRYMIPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGH  370 (400)
Q Consensus       291 ~~~~~~~~~~~r~~~~~~L~~~~g~~~~~p~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~  370 (400)
                      +++.++.+++|++.+.+.+++.+++.+..|+||+|+|++++.           ..++.+|+.+|++++||+++||+.||.
T Consensus       274 l~~~~~~~~~n~~~l~~~l~~~~~~~~~~P~gg~~~~~~~~~-----------~~~~~~~~~~ll~~~gV~v~PG~~F~~  342 (373)
T PRK07324        274 LERNRKIVRTNLAILDEWVAKEPRVSYVKPKAVSTSFIKLDV-----------DMDSEEFCEKLLKETGVLLVPGNRFDL  342 (373)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCEEEEEECCC-----------CCCHHHHHHHHHHHCCEEEECCCCCCC
T ss_conf             999999999999999999973888537635861479987899-----------989999999999968999974886589


Q ss_pred             CCEEEEEEECCHHHHHHHHHHHHHHHHHCC
Q ss_conf             972899962999999999999999998609
Q gi|254780602|r  371 GPSIRISYAVSDAILEEACVRIKRFCHSLQ  400 (400)
Q Consensus       371 ~~~iRis~~~~~e~l~~al~rl~~~l~~l~  400 (400)
                      +||+||+|+.+++.+++|++||++|+++|.
T Consensus       343 ~g~~Ri~fa~~~~~l~egl~RL~~~l~~l~  372 (373)
T PRK07324        343 EGHVRIGYCCDTKTLKKGLKKLSEFLRKLD  372 (373)
T ss_pred             CCEEEEEEECCHHHHHHHHHHHHHHHHHHC
T ss_conf             994999981989999999999999999736


No 62 
>TIGR01264 tyr_amTase_E tyrosine aminotransferase; InterPro: IPR005957   This entry describes tyrosine aminotransferase (2.6.1.5 from EC) as found in animals and Trypanosoma cruzi (Euglenozoa). It is the first enzyme of a pathway of tyrosine degradation via homogentisate.  L-tyrosine + 2-oxoglutarate = 4-hydroxyphenylpyruvate + L-glutamate.; GO: 0004838 tyrosine transaminase activity, 0030170 pyridoxal phosphate binding, 0009072 aromatic amino acid family metabolic process.
Probab=100.00  E-value=0  Score=526.26  Aligned_cols=381  Identities=26%  Similarity=0.438  Sum_probs=339.4

Q ss_pred             HHHCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCC----CCCCHHHHHHHHHHHHCCC-CCCCCCCCCHHHHHHHHHHHH
Q ss_conf             87389758999999999999869972665658974----9889999999999983887-569987789899999999864
Q gi|254780602|r    8 LRRVQPSATLVAAQRVRDLRSKGIDVLCLTAGEPD----FDMPENVKYAVVRAMERGE-TKYTAVAGISPLREAIVEKFR   82 (400)
Q Consensus         8 ~~~l~~s~~~~~~~~~~~~~~~g~~ii~l~~G~p~----~~~p~~i~~a~~~al~~~~-~~Y~~~~G~~~lR~aia~~~~   82 (400)
                      .....-.|++.|+.-++=--.--|.||.|++|||.    +++++...+||+++++.+. +||.|+.|.++.|+|||.||.
T Consensus         9 ~s~~t~NPiR~I~d~~kv~P~PeK~~I~Ls~GDPt~~gnL~~~~~~~~a~~~~v~S~~ynGY~p~vG~~~Ar~aia~~y~   88 (415)
T TIGR01264         9 HSKNTVNPIRKIVDSLKVKPNPEKPMIKLSIGDPTVFGNLPTSEEAMQAMKESVDSGKYNGYAPTVGALEAREAIAEYYR   88 (415)
T ss_pred             HHCCCCCCHHHHHHHCCCCCCCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf             33363485136765077643447841311157888888998888999999987525660677200134888899999876


Q ss_pred             H------HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCHHH
Q ss_conf             2------1013333223323345433332222222332232222333323222222222222222222-22232221033
Q gi|254780602|r   83 R------DNDLHYTSDQIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDMVALCGGIPVFVDT-QQDDNFQVSPE  155 (400)
Q Consensus        83 ~------~~g~~~~~e~I~it~G~~~~l~~~~~~~~~~Gd~Vlv~~P~y~~y~~~~~~~g~~~~~v~~-~~~~~~~~d~~  155 (400)
                      .      +-.-.+++++|++++|+++||.+++.+++|+||.||||.|+|+.|..+++-.|..+.+|.+ .++++|+.|++
T Consensus        89 ~sfvhn~~~~~~~~a~~Vvl~SGCS~Al~~ai~a~Ad~G~nvLVP~PGFplY~Tlc~~~~i~~~~Y~~d~~d~~w~~DL~  168 (415)
T TIGR01264        89 NSFVHNKRPDGSIEADDVVLCSGCSHALEMAIEALADAGQNVLVPRPGFPLYETLCKALGIEVKLYNLDLPDEDWEIDLK  168 (415)
T ss_pred             HHHHCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHCCCCCCEECCCCCCCHHHHHHH
T ss_conf             31100236687201276477167027899999995379780630788872078864014762000025798733566489


Q ss_pred             HHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCC----CCCCCCCCCCCCCCCEE
Q ss_conf             31000122122012113542100001233332111223333320111012211000001----22332221112333225
Q gi|254780602|r  156 KLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRN----CQFSNIVNVEPSLYERT  231 (400)
Q Consensus       156 ~l~~~i~~~~k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~----~~~~s~~~~~~~~~~~~  231 (400)
                      +|++++++|||+|++|||+||||++++++.+++|+.+|.| +.+.||.||+|.+|+|.|    .+|.+++++.+..+  +
T Consensus       169 ~l~~LiDd~T~~l~vnNPSNPcGSvF~~~Hl~~l~a~A~~-~~Lpi~ADEIY~~~VF~GkDPnatF~~lA~L~s~VP--~  245 (415)
T TIGR01264       169 QLESLIDDKTKALIVNNPSNPCGSVFRREHLEELLALAER-LKLPIIADEIYGDMVFKGKDPNATFTPLASLSSKVP--I  245 (415)
T ss_pred             HHHHHCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHH-CCCCEEEEEECCCCCCCCCCCCCCEEEECCCCCCCC--E
T ss_conf             8863125674078883757788988787889999999875-387236642025651388678642202023779988--6


Q ss_pred             EEECCCCCCCCCCCCCCCCCCCHH------H-HHHHHHHHCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCC
Q ss_conf             741465443223445444221101------2-26875310012223322222222222234-676432222221100000
Q gi|254780602|r  232 LVVNGVSKAYAMTGLRIGYAAGAL------S-LIKSMIVLQGQQTSGACSIAQWAAVEALN-GPQDFVVNNRKIFEYRRD  303 (400)
Q Consensus       232 i~~~S~SK~~~~~G~RiG~~v~~~------~-li~~l~~~~~~~~~~~~~~~q~a~~~~l~-~~~~~~~~~~~~~~~~r~  303 (400)
                      |+++++.|.|-+||||+||++...      + +...+.++.+ ...|++++.|-|.-.+|. .+|+|+...+..++++.+
T Consensus       246 ~~cgG~AKr~lVPGWRLGWli~hd~~~~~~~e~~~GL~~ls~-~i~GpntlvQGAl~~iL~~TPq~Yf~~~~~~l~~nA~  324 (415)
T TIGR01264       246 LSCGGLAKRWLVPGWRLGWLIIHDRKGVLRDEVKDGLKKLSQ-RILGPNTLVQGALPEILLKTPQEYFDGTVSVLESNAM  324 (415)
T ss_pred             EEECCCCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHC-HHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_conf             870763200224761102478887888650268899999723-0046201144217988640655677899999874089


Q ss_pred             CHHHHHHCCCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCCCCEEEEEEECCHH
Q ss_conf             00245530477603302740899862641023321133224898999999998739799835022899728999629999
Q gi|254780602|r  304 LCVAQLQGVPGIRYMIPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGHGPSIRISYAVSDA  383 (400)
Q Consensus       304 ~~~~~L~~~~g~~~~~p~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~iRis~~~~~e  383 (400)
                      ++++.|++++|+....|+|+||++++++-..      ..-+++|.+|+++|++|+.|.+.||+.|..+||+|+.++.+.+
T Consensus       325 ~~y~~La~v~Gl~pv~P~GaMY~m~~i~~e~------F~e~k~Dv~F~~~L~~E~sV~cLPG~~F~~PGf~Rvv~T~P~~  398 (415)
T TIGR01264       325 LVYEILAEVPGLRPVMPKGAMYMMVGIELEK------FPEFKSDVEFVEKLVEEESVFCLPGSCFEYPGFFRVVLTVPSS  398 (415)
T ss_pred             HHHHHHHCCCCCEEECCCCCEEEEEEEECCC------CCCCCCHHHHHHHHHHHCCCEECCHHHHCCCCCEEEEEECCHH
T ss_conf             9998851068861114887558756002001------7772411799999851146304641644589958999707806


Q ss_pred             HHHHHHHHHHHHHHH
Q ss_conf             999999999999986
Q gi|254780602|r  384 ILEEACVRIKRFCHS  398 (400)
Q Consensus       384 ~l~~al~rl~~~l~~  398 (400)
                      .++||+.||++||+.
T Consensus       399 ~~~EA~~RI~eFC~r  413 (415)
T TIGR01264       399 MMEEACSRIKEFCKR  413 (415)
T ss_pred             HHHHHHHHHHHHHHC
T ss_conf             789999999998412


No 63 
>PRK09440 avtA valine--pyruvate transaminase; Provisional
Probab=100.00  E-value=0  Score=503.25  Aligned_cols=352  Identities=20%  Similarity=0.324  Sum_probs=283.5

Q ss_pred             CCCEEECCCCCCCC-C-CCHHHHHHHHHHHHCCC-----CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf             99726656589749-8-89999999999983887-----56998778989999999986421013333223323345433
Q gi|254780602|r   30 GIDVLCLTAGEPDF-D-MPENVKYAVVRAMERGE-----TKYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKH  102 (400)
Q Consensus        30 g~~ii~l~~G~p~~-~-~p~~i~~a~~~al~~~~-----~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~  102 (400)
                      -.|||+|++|+||+ | +++.+++++.++++++.     ++|++++|.++||++||+||++++|+++++|||++|+|+++
T Consensus        29 ~P~vIsl~~G~P~~~p~~~~~~~~a~~~~l~~~~~~~~~~qY~~~~G~~eLReaIA~~~~~~~g~~~~pd~I~vT~Gaqq  108 (416)
T PRK09440         29 TPGAIMLGGGNPAHIPEMEDYFRDLLAELLASGKLTEALGNYDGPQGKDELIEALAALLNERYGWNISPENIALTNGSQS  108 (416)
T ss_pred             CCCEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHEEECCCHHH
T ss_conf             99848817968988898229999999999846866654478899987099999999999998489998300998487899


Q ss_pred             CCCCCCCCCCCCCCC-----CCCC-CCCCCCCCCCCCCCCC---CCCCCCCCCCCC--CCCHHHHHHCCCCCCCCCEEEC
Q ss_conf             332222222332232-----2223-3332322222222222---222222222232--2210333100012212201211
Q gi|254780602|r  103 VIFNALMATVNMGDE-----VLIP-RPYWVSYPDMVALCGG---IPVFVDTQQDDN--FQVSPEKLEQAITPKTKWLFLN  171 (400)
Q Consensus       103 ~l~~~~~~~~~~Gd~-----Vlv~-~P~y~~y~~~~~~~g~---~~~~v~~~~~~~--~~~d~~~l~~~i~~~~k~i~l~  171 (400)
                      ||+++++++++|||.     |+++ +|+|+.|.......+.   ....+...+++.  |.+|.++++  +++++|++++|
T Consensus       109 al~l~~~~l~~pgd~~~~~~vl~p~~P~Y~~Y~~~~l~~~~~~~~~p~i~~~~~~~~~~~~d~~~l~--~~~~t~~ii~~  186 (416)
T PRK09440        109 AFFYLFNLFAGRRADGSLKKILLPLAPEYIGYADAGLEEDLFVSARPNIELLPEGQFKYHVDFEHLD--IDEETGAICVS  186 (416)
T ss_pred             HHHHHHHHHCCCCCCCCCCEEEEECCCCCCCHHHHHHHHCCCEECCCEEEECCCCCCCCCCCHHHHH--CCCCCEEEEEC
T ss_conf             9999999964767887764389726986544477775006500005605766875656788989971--77784399977


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCC
Q ss_conf             35421000012333321112233333201110122110000012233222111233322574146544322344544422
Q gi|254780602|r  172 SPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTGLRIGYA  251 (400)
Q Consensus       172 nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~  251 (400)
                      |||||||.+||.+++++|+++| ++||++||+||+|+. .|.+..+.   ...+...+++|+++||||. ++||||+||+
T Consensus       187 ~P~NPTG~v~s~e~~~~l~~la-~~~~i~iI~De~Y~~-~~~~~~~~---~~~~~~~~~vI~~~SfSK~-~~pG~RiG~~  260 (416)
T PRK09440        187 RPTNPTGNVITDEELAKLDALA-RQHNIPLIIDNAYGP-PFPGIIFS---EATPLWNPNIILCMSLSKL-GLPGVRCGIV  260 (416)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHH-HHCCEEEEEECCCCC-CCCCCCCC---CCCCCCCCCEEEECCCCCC-CCCCCCEEEE
T ss_conf             8989988778899999999999-987958999789877-78763315---5676678988997451120-2865425899


Q ss_pred             CCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC--CCCC-CCCCCCCCCCCCHHHHHHC-CCC--CEEEECCCCEE
Q ss_conf             1101226875310012223322222222222234676--4322-2222110000000245530-477--60330274089
Q gi|254780602|r  252 AGALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGPQ--DFVV-NNRKIFEYRRDLCVAQLQG-VPG--IRYMIPDGAFY  325 (400)
Q Consensus       252 v~~~~li~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~--~~~~-~~~~~~~~~r~~~~~~L~~-~~g--~~~~~p~g~~y  325 (400)
                      ++|+++++++.++++....+++.+.|.++..+|+.++  .+.. .++..|++||+.+.+.|++ +++  +.++.|+||||
T Consensus       261 vap~~~i~~l~~~~~~~~~~~~~~~Q~~a~~~l~~~~~~~~~~~~~r~~y~~rr~~~~~~L~~~l~~~~~~~~~P~Ggff  340 (416)
T PRK09440        261 IANEEIIEALTNMNGIISLAPGRLGPAIAAELIESGDLLRLSETVIRPFYRQKVQLAIALLRRALPDLPCLIHKPEGAIF  340 (416)
T ss_pred             ECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCEE
T ss_conf             68999999999999763488569999999999977968999999999999999999999999857898148857982469


Q ss_pred             EEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCC---------CCEEEEEEECCHHHHHHHHHHHHHHH
Q ss_conf             986264102332113322489899999999873979983502289---------97289996299999999999999999
Q gi|254780602|r  326 LYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGH---------GPSIRISYAVSDAILEEACVRIKRFC  396 (400)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~---------~~~iRis~~~~~e~l~~al~rl~~~l  396 (400)
                      +|+++++.          ..++.+|++.+ +++||+++||+.|+.         .+++||||+.++|+|++|++||++++
T Consensus       341 ~wv~~p~~----------~~~~~~l~~~l-~e~gV~vvPG~~F~~g~~~~~~~~~~~lRlsfa~~~e~i~egi~RLa~~i  409 (416)
T PRK09440        341 LWLWFKDL----------PITTEELYQRL-KARGVLIVPGHYFFPGLDEPWPHTHQCIRMSYVQDDEEIEKGIAILAEEV  409 (416)
T ss_pred             EEEECCCC----------CCCHHHHHHHH-HHCCEEEEECHHHCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHH
T ss_conf             99988999----------98999999999-97997998264317999876557788699982799999999999999999


Q ss_pred             HHCC
Q ss_conf             8609
Q gi|254780602|r  397 HSLQ  400 (400)
Q Consensus       397 ~~l~  400 (400)
                      ++.+
T Consensus       410 ~~~~  413 (416)
T PRK09440        410 EKAY  413 (416)
T ss_pred             HHHH
T ss_conf             9998


No 64 
>cd00609 AAT_like Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of  the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi
Probab=100.00  E-value=0  Score=494.98  Aligned_cols=346  Identities=34%  Similarity=0.521  Sum_probs=311.1

Q ss_pred             EECCCCCCCCCCCHHHHHHHHHHH-HCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             665658974988999999999998-3887569987789899999999864210133332233233454333322222223
Q gi|254780602|r   34 LCLTAGEPDFDMPENVKYAVVRAM-ERGETKYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFNALMATV  112 (400)
Q Consensus        34 i~l~~G~p~~~~p~~i~~a~~~al-~~~~~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l~~~~~~~~  112 (400)
                      |+|++|+|++++|+.+.+++.+.. ....++|.+..|.++||++||+|+++++|+++++|+|++|+|++++|.+++++++
T Consensus         1 i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~lr~aia~~~~~~~~~~~~~~~I~it~G~~~al~~~~~~l~   80 (350)
T cd00609           1 IDLSIGEPDFPPPPEVLEALAAAALRAGLLGYYPDPGLPELREAIAEWLGRRGGVDVPPEEIVVTNGAQEALSLLLRALL   80 (350)
T ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHEEEECCHHHHHHHHHHHHC
T ss_conf             95858689998799999999999747467587999881999999999987873899747978992699999999999980


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             32232222333323222222222222222222222322210333100012212201211354210000123333211122
Q gi|254780602|r  113 NMGDEVLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALADV  192 (400)
Q Consensus       113 ~~Gd~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~k~i~l~nP~NPTG~v~s~~~l~~i~~~  192 (400)
                      +|||+|++++|+|+.|...++..|.+++.++++++++|.++.+.++.+.++++|++++||||||||.+++.+++++|+++
T Consensus        81 ~~gd~vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~  160 (350)
T cd00609          81 NPGDEVLVPDPTYPGYEAAARLAGAEVVPVPLDEEGGFLLDLELLEAAKTPKTKLLYLNNPNNPTGAVLSEEELEELAEL  160 (350)
T ss_pred             CCCCEEEEECCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHH
T ss_conf             89898999479863069999982994125565600386766899998568899789856994972546337889899999


Q ss_pred             CCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHH-HHHHHHHHCCCCCCC
Q ss_conf             3333320111012211000001223322211123332257414654432234454442211012-268753100122233
Q gi|254780602|r  193 LVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTGLRIGYAAGALS-LIKSMIVLQGQQTSG  271 (400)
Q Consensus       193 ~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~v~~~~-li~~l~~~~~~~~~~  271 (400)
                      |. +++++||+||+|.++.|++..+.++...  +..+++|+++||||+|++||+|+||++++++ +.+.+.........+
T Consensus       161 a~-~~~~~ii~De~Y~~~~~~~~~~~~~~~~--~~~~~~i~~~S~SK~~~l~GlRiG~~~~~~~~~~~~~~~~~~~~~~~  237 (350)
T cd00609         161 AK-KHGILIISDEAYAELVYDGEPPPALALL--DAYERVIVLRSFSKTFGLPGLRIGYLIAPPEELLERLKKLLPYTTSG  237 (350)
T ss_pred             HH-HCCCEEEEECCCHHHCCCCCCCCHHHHC--CCCCEEEEEECCCCCCCCCCCCEEEEEECHHHHHHHHHHHCCCCCCC
T ss_conf             86-2386268853412203699888967855--77980899911723037945377999988899999998624214678


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCHHHHH
Q ss_conf             22222222222234676432222221100000002455304776033027408998626410233211332248989999
Q gi|254780602|r  272 ACSIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQGVPGIRYMIPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFV  351 (400)
Q Consensus       272 ~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~~~~~L~~~~g~~~~~p~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~  351 (400)
                      ++.+.|.++..++++.++|+++.++.++++|+.+.+.|++..+..+..|+||||+|+++++.            ++.+++
T Consensus       238 ~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~p~~g~f~~~~~~~~------------~~~~~~  305 (350)
T cd00609         238 PSTLSQAAAAAALDDGEEHLEELRERYRRRRDALLEALKELGPLVVVKPSGGFFLWLDLPEG------------DDEEFL  305 (350)
T ss_pred             CCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCEEEEEECCCC------------CHHHHH
T ss_conf             98799999999986829999999999999999999999857996120799553998989999------------829999


Q ss_pred             HHHHHHCCEEEECCCCCCC--CCEEEEEEECCHHHHHHHHHHHHH
Q ss_conf             9999873979983502289--972899962999999999999999
Q gi|254780602|r  352 NGLLEIEKVAVVQGSSFGH--GPSIRISYAVSDAILEEACVRIKR  394 (400)
Q Consensus       352 ~~Ll~~~gV~v~pG~~Fg~--~~~iRis~~~~~e~l~~al~rl~~  394 (400)
                      .++++++||+++||..||.  ++|+||+|+.+++++++|++||++
T Consensus       306 ~~~l~~~gv~v~~g~~f~~~~~~~iRl~~~~~~~~~~~~~~rl~~  350 (350)
T cd00609         306 ERLLLEAGVVVRPGSAFGEGGEGFVRLSFATPEEELEEALERLAE  350 (350)
T ss_pred             HHHHHHCCEEEEECHHHCCCCCCEEEEEECCCHHHHHHHHHHHCC
T ss_conf             999997999999245648899897999963989999999998578


No 65 
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=100.00  E-value=0  Score=489.52  Aligned_cols=381  Identities=24%  Similarity=0.380  Sum_probs=335.8

Q ss_pred             CHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             93678898738975899999999999986997266565897498899999999999838875699877898999999998
Q gi|254780602|r    1 MVFISNILRRVQPSATLVAAQRVRDLRSKGIDVLCLTAGEPDFDMPENVKYAVVRAMERGETKYTAVAGISPLREAIVEK   80 (400)
Q Consensus         1 m~~~s~~~~~l~~s~~~~~~~~~~~~~~~g~~ii~l~~G~p~~~~p~~i~~a~~~al~~~~~~Y~~~~G~~~lR~aia~~   80 (400)
                      |+.+.....++...   .+.+.+..   .+.|+++||+++|||++||.|++|+++.+++|.+||+  .+..++-++|++|
T Consensus         1 ~~~F~~~~~r~~t~---s~KWd~~~---g~~DvlPmWVADMDf~~pp~i~~Al~~rvdhGvfGY~--~~~~~~~~ai~~w   72 (388)
T COG1168           1 MYDFDTVIERLGTN---SLKWDAHP---GNEDVLPMWVADMDFPTPPEIIEALRERVDHGVFGYP--YGSDELYAAIAHW   72 (388)
T ss_pred             CCCHHHHHHHCCCC---CEECCCCC---CCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCCC--CCCHHHHHHHHHH
T ss_conf             97534556642887---50025568---9888413432004678887999999999865877887--8877899999999


Q ss_pred             HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCHHHHHHC
Q ss_conf             64210133332233233454333322222223322322223333232222222222222222222-22322210333100
Q gi|254780602|r   81 FRRDNDLHYTSDQIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDMVALCGGIPVFVDTQ-QDDNFQVSPEKLEQ  159 (400)
Q Consensus        81 ~~~~~g~~~~~e~I~it~G~~~~l~~~~~~~~~~Gd~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~-~~~~~~~d~~~l~~  159 (400)
                      .++++++++++|.|++++|...+|..++++++.|||.|++.+|.|+.+...++..|.+++..|+. .+++|.+|+++|++
T Consensus        73 ~~~r~~~~i~~e~i~~~p~VVpgi~~~I~~~T~~gd~Vvi~tPvY~PF~~~i~~n~R~~i~~pL~~~~~~y~iD~~~LE~  152 (388)
T COG1168          73 FKQRHQWEIKPEWIVFVPGVVPGISLAIRALTKPGDGVVIQTPVYPPFYNAIKLNGRKVIENPLVEDDGRYEIDFDALEK  152 (388)
T ss_pred             HHHHCCCCCCCCEEEECCCCHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHCCCEEEECCCCCCCCCEEECHHHHHH
T ss_conf             99713777885528983751276999999837699826964888618999875169679746643469847752999999


Q ss_pred             CCC-CCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCC
Q ss_conf             012-2122012113542100001233332111223333320111012211000001223322211123332257414654
Q gi|254780602|r  160 AIT-PKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVS  238 (400)
Q Consensus       160 ~i~-~~~k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~S  238 (400)
                      ++. +++|+++|||||||||+||++++|.+|.++|.| ||+.||+||+|.+|+|.|.+|.+++++.+...+++|++.|.|
T Consensus       153 ~~~~~~vkl~iLCnPHNP~Grvwt~eeL~~i~elc~k-h~v~VISDEIHaDlv~~g~~h~~~a~ls~~~a~~~it~~saS  231 (388)
T COG1168         153 AFVDERVKLFILCNPHNPTGRVWTKEELRKIAELCLR-HGVRVISDEIHADLVLGGHKHIPFASLSERFADNSITLTSAS  231 (388)
T ss_pred             HHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHH-CCCEEEEECCCCCCCCCCCCCCCHHHCCHHHHCCEEEEEECC
T ss_conf             9843776089993799999864369999999999998-399898303356612169876654326955432359984052


Q ss_pred             CCCCCCCCCCCCCCCH-HHHHHH-HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHC-CCCC
Q ss_conf             4322344544422110-122687-531001222332222222222223467643222222110000000245530-4776
Q gi|254780602|r  239 KAYAMTGLRIGYAAGA-LSLIKS-MIVLQGQQTSGACSIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQG-VPGI  315 (400)
Q Consensus       239 K~~~~~G~RiG~~v~~-~~li~~-l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~~~~~L~~-~~g~  315 (400)
                      |+|+++|+++++++.+ +++.++ +.++......++|.+.-.|...+++.+++|+.+++++++.|++++.+.|++ +|++
T Consensus       232 KtFNlaGL~~a~~Ii~n~~lr~~~~~~l~~~~~~~~n~lg~~A~~aAY~~G~~WLd~L~~yl~~N~~~~~~~l~~~~P~v  311 (388)
T COG1168         232 KTFNLAGLKCAYIIISNRELRAKFLKRLKRNGLHGPSALGIIATEAAYNQGEPWLDELLEYLKDNRDYVADFLNKHLPGV  311 (388)
T ss_pred             CCCCCHHHHHEEEEECCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             21560444421478348899999999998733799846889999999972649999999999998999999998659874


Q ss_pred             EEEECCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCCC--CEEEEEEECCHHHHHHHHHHHH
Q ss_conf             03302740899862641023321133224898999999998739799835022899--7289996299999999999999
Q gi|254780602|r  316 RYMIPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGHG--PSIRISYAVSDAILEEACVRIK  393 (400)
Q Consensus       316 ~~~~p~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~--~~iRis~~~~~e~l~~al~rl~  393 (400)
                      ++..|||+|.+|+||+.+.          .++.++.+.|+++.+|++.+|+.||..  ||+|++|++|...+++|++||+
T Consensus       312 ~v~~p~gTYL~WLD~r~l~----------l~d~~l~~~ll~~akVal~~G~~FG~~g~gf~RlN~acpr~~L~eal~ri~  381 (388)
T COG1168         312 KVTEPQGTYLAWLDCRELG----------LDDSELAEFLLEEAKVALSPGSTFGEEGSGFVRLNFACPRAILEEALERLK  381 (388)
T ss_pred             EEECCCCCEEEEEECCCCC----------CCHHHHHHHHHHHHCEECCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHH
T ss_conf             7866887566653200238----------985789999997515713578756767874588863798899999999999


Q ss_pred             HHHHHCC
Q ss_conf             9998609
Q gi|254780602|r  394 RFCHSLQ  400 (400)
Q Consensus       394 ~~l~~l~  400 (400)
                      +.++.++
T Consensus       382 ~al~~~~  388 (388)
T COG1168         382 RALKKRR  388 (388)
T ss_pred             HHHHCCC
T ss_conf             9985259


No 66 
>PRK00950 histidinol-phosphate aminotransferase; Validated
Probab=100.00  E-value=0  Score=483.56  Aligned_cols=362  Identities=23%  Similarity=0.371  Sum_probs=309.7

Q ss_pred             CHHHHHHHHHCCCC-HHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             93678898738975-89999999999998699726656589749889999999999983887569987789899999999
Q gi|254780602|r    1 MVFISNILRRVQPS-ATLVAAQRVRDLRSKGIDVLCLTAGEPDFDMPENVKYAVVRAMERGETKYTAVAGISPLREAIVE   79 (400)
Q Consensus         1 m~~~s~~~~~l~~s-~~~~~~~~~~~~~~~g~~ii~l~~G~p~~~~p~~i~~a~~~al~~~~~~Y~~~~G~~~lR~aia~   79 (400)
                      |-.+.+.+++|+|+ +...+.+.++++...+.|||+|+.|+++|+|||.+++++.+++++ .+.||+. +.++||++||+
T Consensus         4 ~~~~~~~~~~~~~y~~g~~~~~~a~~~g~~~~~ii~ls~nenp~gp~p~v~~a~~~~~~~-~~~YPd~-~~~~Lr~aiA~   81 (369)
T PRK00950          4 MEKIRAIVKEIKEYVPGKSKEEIARNYGIDPESIIKLGSNENPLGPSPKAVEALIDEAPN-IHQYPEP-DAPELREAISK   81 (369)
T ss_pred             HHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHC-CCCCCCC-CHHHHHHHHHH
T ss_conf             566668863799989999999999980989689888129899867889999999987532-5879998-88999999999


Q ss_pred             HHHHHCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf             864210133332233233-4543333222222233223222233332322222222222222222222232221033310
Q gi|254780602|r   80 KFRRDNDLHYTSDQIIVG-TGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNFQVSPEKLE  158 (400)
Q Consensus        80 ~~~~~~g~~~~~e~I~it-~G~~~~l~~~~~~~~~~Gd~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~  158 (400)
                      |+      ++++|+|+++ +|++++|.++++++++|||+|++++|+|+.|...++..|++++.++++++++|.+|+|++.
T Consensus        82 ~~------gv~~e~ii~~gnGs~e~i~~l~~~~~~~Gd~vl~~~P~y~~Y~~~a~~~G~~~~~v~~~~~~~f~~d~~~l~  155 (369)
T PRK00950         82 YT------GVPVENIIVGGDGADEIIDVLMRILIDEGDEVIIPIPTFTYYEISARACGAKPVYAKFDREEDFKLDVESVL  155 (369)
T ss_pred             HH------CCCCCCEEEECCCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCEEEECCCCCCCCCCCCHHHHH
T ss_conf             86------819758799756499999999999957999999898873036999998398202236771249988999999


Q ss_pred             CCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCC
Q ss_conf             00122122012113542100001233332111223333320111012211000001223322211123332257414654
Q gi|254780602|r  159 QAITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVS  238 (400)
Q Consensus       159 ~~i~~~~k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~S  238 (400)
                      +.+++++|++++||||||||.+++.++++++++.    ++++||+||+|.+|.  +....++   ... ++++++++|||
T Consensus       156 ~~i~~~tklv~l~nPnNPTG~~~~~~el~~l~~~----~~~~vv~DEaY~ef~--~~~~~~l---~~~-~~n~iv~~SfS  225 (369)
T PRK00950        156 NAITDKTKIIFLCTPNNPTGNLIPEEDIRKIVES----TDALVFVDEAYIEFA--EYDLTEL---ALE-YDNVLVLRTFS  225 (369)
T ss_pred             HHCCCCCEEEEEECCCCCCCEEECHHHHHHHHHC----CCEEEEECCCHHHHC--CCCHHHH---HHH-CCCEEEEEECC
T ss_conf             7367676089980899987832479998789871----887999424267525--7971567---874-58658984121


Q ss_pred             CCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEE
Q ss_conf             43223445444221101226875310012223322222222222234676432222221100000002455304776033
Q gi|254780602|r  239 KAYAMTGLRIGYAAGALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQGVPGIRYM  318 (400)
Q Consensus       239 K~~~~~G~RiG~~v~~~~li~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~~~~~L~~~~g~~~~  318 (400)
                      |+|++||||+||+++++++++.+.+++.  ..+++.+.|.++.++|+ .++|+++.++.++++|+.+.+.|++++++++.
T Consensus       226 K~~~laGlRlGy~i~~~~li~~l~~~~~--~~~v~~~aq~aa~aaL~-~~~~~~~~~~~~~~~R~~l~~~L~~l~~~~v~  302 (369)
T PRK00950        226 KVFGLAGMRIGYGIMPKWIIEYMMRIKP--PFSLTRLSQAAAIAALR-DKEFIEKSIELGIESREYLYEGLKKFKPLKVY  302 (369)
T ss_pred             HHHHCCCCEEEEEECCHHHHHHHHHHCC--CCCHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEC
T ss_conf             5540577504676469999999998568--75706999999999950-95889999999999999999999857997787


Q ss_pred             ECCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCC--CCEEEEEEECCHHHHHHHHHHHHHHH
Q ss_conf             0274089986264102332113322489899999999873979983502289--97289996299999999999999999
Q gi|254780602|r  319 IPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGH--GPSIRISYAVSDAILEEACVRIKRFC  396 (400)
Q Consensus       319 ~p~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~--~~~iRis~~~~~e~l~~al~rl~~~l  396 (400)
                       |.+++|+|+++++           ..++.+|+++|++ +||+|+||+.|+.  ++|+|||+++++|+ +.-++.|++.+
T Consensus       303 -ps~anFil~~~~~-----------~~~~~~~~~~Ll~-~gI~Vr~g~~f~~~~~~~iRisigt~~en-~~ll~al~~il  368 (369)
T PRK00950        303 -PSEANYVLVDVKP-----------GMTAKEFTEELLK-KGVIVRDCTSFEGLGDYYIRVSIGTLEEN-ERFLEILKEIV  368 (369)
T ss_pred             -CCCCEEEEEECCC-----------CCCHHHHHHHHHH-CCEEEEECCCCCCCCCCEEEEEECCHHHH-HHHHHHHHHHH
T ss_conf             -8986189998999-----------9999999999996-99599968777778989899980899999-99999999985


Q ss_pred             H
Q ss_conf             8
Q gi|254780602|r  397 H  397 (400)
Q Consensus       397 ~  397 (400)
                      +
T Consensus       369 ~  369 (369)
T PRK00950        369 E  369 (369)
T ss_pred             C
T ss_conf             9


No 67 
>KOG0259 consensus
Probab=100.00  E-value=0  Score=474.06  Aligned_cols=359  Identities=26%  Similarity=0.475  Sum_probs=327.1

Q ss_pred             CCCEEECCCCCCC----CCCCHHHHHHHHHHHHCCC-CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf             9972665658974----9889999999999983887-5699877898999999998642101333322332334543333
Q gi|254780602|r   30 GIDVLCLTAGEPD----FDMPENVKYAVVRAMERGE-TKYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVI  104 (400)
Q Consensus        30 g~~ii~l~~G~p~----~~~p~~i~~a~~~al~~~~-~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l  104 (400)
                      ++.||+|+.|+|+    |++.+...+|+.++++.|. ++|+|+.|.+..|+|||+|+++...-.+++++|++|+|++|||
T Consensus        60 ~k~iipl~~GDPsv~~~~~ts~~a~~Av~~al~Sgk~N~Yaps~G~~~AR~AVAeYl~~~l~~kl~a~DV~ltsGC~qAI  139 (447)
T KOG0259          60 KKPILPLGHGDPSVYPCFRTSQEAEQAVVDALRSGKGNGYAPSVGILPARRAVAEYLNRDLPNKLTADDVVLTSGCSQAI  139 (447)
T ss_pred             CCEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCEEEECCCHHHH
T ss_conf             85031378899876666668889999999999638877768765648899999998631898756747669955636999


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCC
Q ss_conf             22222223322322223333232222222222222222222223222103331000122122012113542100001233
Q gi|254780602|r  105 FNALMATVNMGDEVLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQN  184 (400)
Q Consensus       105 ~~~~~~~~~~Gd~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~k~i~l~nP~NPTG~v~s~~  184 (400)
                      .+++.++.+||..||+|.|+||.|...+...|.++.++++-+|++|++|++.+++.++++|.+++++|||||+|.|||.+
T Consensus       140 e~~i~~LA~p~aNILlPrPGfp~Y~~~a~~~~lEVR~ydlLPe~~weIDL~~veal~DENT~AivviNP~NPcGnVys~~  219 (447)
T KOG0259         140 ELAISSLANPGANILLPRPGFPLYDTRAIYSGLEVRYYDLLPEKDWEIDLDGVEALADENTVAIVVINPNNPCGNVYSED  219 (447)
T ss_pred             HHHHHHHCCCCCCEECCCCCCCHHHHHHHHCCCEEEEECCCCCCCCEECHHHHHHHHCCCEEEEEEECCCCCCCCCCCHH
T ss_conf             99999743899866547999846887663258436763256765615316889976446706999967999986515199


Q ss_pred             CCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHH--------H
Q ss_conf             33211122333332011101221100000122332221112333225741465443223445444221101--------2
Q gi|254780602|r  185 RLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTGLRIGYAAGAL--------S  256 (400)
Q Consensus       185 ~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~v~~~--------~  256 (400)
                      .|++|++.| +++++.||+||+|.+++|++.+|.++..+.+..  .+|+++|+||.|-+||||+||++.+.        .
T Consensus       220 HL~kiae~A-~klgi~vIaDEVY~~~vfg~~pfvpmg~fssiV--PVitlggisKrW~VPGWRlGWi~~hD~~gvf~~~~  296 (447)
T KOG0259         220 HLKKIAETA-KKLGIMVIADEVYGHTVFGDKPFVPMGKFSSIV--PVITLGGISKRWIVPGWRLGWIALHDPRGVFRDTK  296 (447)
T ss_pred             HHHHHHHHH-HHHCCEEEEHHHCCEEECCCCCCCCHHHCCCCC--CEEEECCCCCCCCCCCCEEEEEEEECCCCCCCCHH
T ss_conf             999999999-984976976111231331799730013305657--36861542356404773034689756665424418


Q ss_pred             HHHHHHHHCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCHHHHHHCCCCCE-EEECCCCEEEEEECCCCC
Q ss_conf             268753100122233222222222222346-764322222211000000024553047760-330274089986264102
Q gi|254780602|r  257 LIKSMIVLQGQQTSGACSIAQWAAVEALNG-PQDFVVNNRKIFEYRRDLCVAQLQGVPGIR-YMIPDGAFYLYPSCQDLI  334 (400)
Q Consensus       257 li~~l~~~~~~~~~~~~~~~q~a~~~~l~~-~~~~~~~~~~~~~~~r~~~~~~L~~~~g~~-~~~p~g~~y~~~~~~~~~  334 (400)
                      +++.+.++.+ ...+++++.|.|.-..|+. +++++......++.+.++.++.|+++|++. ..+|+|.+|+|++++-..
T Consensus       297 ~~q~~~~~~~-~~~~p~TiiQ~AlP~IL~kTp~efF~k~~~~lk~na~l~y~~Lk~IP~l~cp~kPeg~mylmv~l~~s~  375 (447)
T KOG0259         297 VVQGIKNFLD-IIPGPATIIQGALPDILEKTPEEFFDKKLSFLKSNADLCYSRLKDIPCLTCPVKPEGCMYLMVKLNLSL  375 (447)
T ss_pred             HHHHHHHHHH-CCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCHHH
T ss_conf             9999999985-459950859877588987483999999999987627999999845987666758875158985266654


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHH
Q ss_conf             3321133224898999999998739799835022899728999629999999999999999986
Q gi|254780602|r  335 GKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGHGPSIRISYAVSDAILEEACVRIKRFCHS  398 (400)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~iRis~~~~~e~l~~al~rl~~~l~~  398 (400)
                            .....||.+||..|.+|..|.+.||.+||.++|+|++++.+.+.++||+.||+.|+++
T Consensus       376 ------~~~~~dD~dFc~kL~~Eesv~~LPG~af~~~nw~Ri~i~~~~~~leea~~Rik~Fc~R  433 (447)
T KOG0259         376 ------FPDIEDDVDFCQKLAREESVICLPGQAFGLKNWLRIVITVEEEMLEEAFSRIKEFCDR  433 (447)
T ss_pred             ------HCCCCCCHHHHHHHHHHCCEEEECCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHH
T ss_conf             ------0022450899999863142687251203678848999705737899999999999986


No 68 
>PRK03566 consensus
Probab=100.00  E-value=0  Score=472.73  Aligned_cols=356  Identities=22%  Similarity=0.334  Sum_probs=300.2

Q ss_pred             HHHHHHCCCCHHHH-HHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             88987389758999-99999999986997266565897498899999999999838875699877898999999998642
Q gi|254780602|r    5 SNILRRVQPSATLV-AAQRVRDLRSKGIDVLCLTAGEPDFDMPENVKYAVVRAMERGETKYTAVAGISPLREAIVEKFRR   83 (400)
Q Consensus         5 s~~~~~l~~s~~~~-~~~~~~~~~~~g~~ii~l~~G~p~~~~p~~i~~a~~~al~~~~~~Y~~~~G~~~lR~aia~~~~~   83 (400)
                      -+.+++|+|+..-. +.+.++++.  -.++|+|+.+++.++||+.+++++++++++ .+.||+..+ .+||++||+|+  
T Consensus         7 ~~~~~~l~~y~~g~~~~~~~~~~g--~~~~i~l~~NeNp~gp~~~v~~a~~~~~~~-~~~YPd~~~-~~Lr~aiA~~~--   80 (365)
T PRK03566          7 PPGVRALSPYQPGKPIEELARELG--LSDIVKLASNENPLGPSPKALEAIRAALSE-LHRYPDGNG-FELKAALAEKL--   80 (365)
T ss_pred             CHHHCCCCCCCCCCCHHHHHHHHC--CCCEEEEECCCCCCCCCHHHHHHHHHHHHH-CCCCCCCCH-HHHHHHHHHHH--
T ss_conf             887527799889989899998709--988788218899989899999999998886-166959668-99999999997--


Q ss_pred             HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCC
Q ss_conf             10133332233233454333322222223322322223333232222222222222222222223222103331000122
Q gi|254780602|r   84 DNDLHYTSDQIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQAITP  163 (400)
Q Consensus        84 ~~g~~~~~e~I~it~G~~~~l~~~~~~~~~~Gd~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~  163 (400)
                          ++++|||++|+|++++|.++++++++|||+|++++|+|+.|...++.+|++++.+|+.   +|.+|++++.+++++
T Consensus        81 ----gv~~~~I~v~~Gs~e~i~l~~~a~~~pGd~Vl~~~P~y~~Y~~~~~~~g~~~~~vp~~---~~~~dl~~l~~~i~~  153 (365)
T PRK03566         81 ----GVPPEQITLGNGSNDLLELLARAFLGPGDEIIYSQYAFAVYPLATQAVGARAVEVPAK---DYGHDLEAMLAAITP  153 (365)
T ss_pred             ----CCCHHHEEECCCHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHCCCEEEEECCC---CCCCCHHHHHHHCCC
T ss_conf             ----8486679987789999999999855899876766886689999999819748996176---767695889986388


Q ss_pred             CCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCC
Q ss_conf             12201211354210000123333211122333332011101221100000122332221112333225741465443223
Q gi|254780602|r  164 KTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAM  243 (400)
Q Consensus       164 ~~k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~~  243 (400)
                      ++|+|++||||||||+++++++++++++.+ ++ +++||+||+|.+|++++..+.++..+ .. ++++|+++||||+|+|
T Consensus       154 ~~klv~l~nPnNPTG~~~~~~~l~~l~~~~-~~-~~~vV~DEaY~ef~~~~~~~~~~~~~-~~-~~n~iv~rSfSK~~gl  229 (365)
T PRK03566        154 KTRLVFIANPNNPTGTFLSAAELEAFLAKV-PP-DVLVVLDEAYTEYAAPEERPDSLAWL-KK-YPNLVVSRTFSKAYGL  229 (365)
T ss_pred             CCCEEEECCCCCCCCCCCCCHHHHHHHHHC-CC-CCEEEEECCHHHHCCCCCCCCHHHHH-HH-CCCEEEEEECCHHCCC
T ss_conf             886899779999887735706589999754-56-74498524577750477777788876-41-3772598545452057


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEECCCC
Q ss_conf             44544422110122687531001222332222222222223467643222222110000000245530477603302740
Q gi|254780602|r  244 TGLRIGYAAGALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQGVPGIRYMIPDGA  323 (400)
Q Consensus       244 ~G~RiG~~v~~~~li~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~~~~~L~~~~g~~~~~p~g~  323 (400)
                      ||||+||+++++++++.+.++++  ..+++++.|.++..+|+ .++|+++.++.++++|+.+.+.|+++ |+++.++ +|
T Consensus       230 aGlRiGy~ia~~~li~~l~~~~~--p~~vn~~aq~aa~aaL~-~~~~~~~~~~~~~~~r~~l~~~L~~~-g~~~~ps-~~  304 (365)
T PRK03566        230 AGLRVGYAVSNPEIADLLNRVRQ--PFNVNSLALAAAVAALD-DDDFLAKSRELNRAGMQQLEAGFDAL-GLEYIPS-KG  304 (365)
T ss_pred             CCHHHEEEECCHHHHHHHHHHCC--CCCCCHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHHHHHHHHC-CCEECCC-CC
T ss_conf             57301410169999999999618--88977999999999958-99999999999998999999999978-7988789-98


Q ss_pred             EEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHH
Q ss_conf             89986264102332113322489899999999873979983502289972899962999999999999999998
Q gi|254780602|r  324 FYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGHGPSIRISYAVSDAILEEACVRIKRFCH  397 (400)
Q Consensus       324 ~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~iRis~~~~~e~l~~al~rl~~~l~  397 (400)
                      .|+|++++             .++.+++++|++ +||+|+||+.||.++|+||++++++|+ +.-++.|++.|+
T Consensus       305 nF~l~~~~-------------~~~~~l~~~L~~-~gV~Vrp~~~fgl~~~lRis~g~~een-~~l~~aL~~il~  363 (365)
T PRK03566        305 NFVTVDVG-------------RDAAAIYQALLR-QGVIVRPVAGYGMPNHLRVSIGLPEEN-ARFLAALKKVLA  363 (365)
T ss_pred             EEEEEECC-------------CCHHHHHHHHHH-CCEEEEECCCCCCCCEEEEEECCHHHH-HHHHHHHHHHHC
T ss_conf             08999789-------------999999999997-791898689899989799995899999-999999999876


No 69 
>PRK02731 histidinol-phosphate aminotransferase; Validated
Probab=100.00  E-value=0  Score=465.24  Aligned_cols=357  Identities=23%  Similarity=0.351  Sum_probs=298.8

Q ss_pred             HHHHHCCCCHH-HHHHHHHHHHHHCC-CCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             89873897589-99999999999869-97266565897498899999999999838875699877898999999998642
Q gi|254780602|r    6 NILRRVQPSAT-LVAAQRVRDLRSKG-IDVLCLTAGEPDFDMPENVKYAVVRAMERGETKYTAVAGISPLREAIVEKFRR   83 (400)
Q Consensus         6 ~~~~~l~~s~~-~~~~~~~~~~~~~g-~~ii~l~~G~p~~~~p~~i~~a~~~al~~~~~~Y~~~~G~~~lR~aia~~~~~   83 (400)
                      +.+.+++|+.. ..+.+.+++   .| .|+|+|+.+++.++||+.+++++.+++++ .+.||+..+ .+||++||+++  
T Consensus         8 p~i~~~~~y~~g~~~~~~~~~---~g~~~ii~l~~Nenp~gp~~~v~~ai~~~~~~-~~~YPd~~~-~~Lr~aiA~~~--   80 (367)
T PRK02731          8 PGILDIAPYVPGKPIEELVRE---YGIADIIKLASNENPLGPSPKAIEAIRAAADE-LHRYPDGSG-FELKAALAEKF--   80 (367)
T ss_pred             CCCCCCCCCCCCCCHHHHHHH---CCCCCEEEECCCCCCCCCCHHHHHHHHHHHHH-HCCCCCCCH-HHHHHHHHHHH--
T ss_conf             212048998999998999986---09887688119899999899999999987755-115959878-99999999997--


Q ss_pred             HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCC
Q ss_conf             10133332233233454333322222223322322223333232222222222222222222223222103331000122
Q gi|254780602|r   84 DNDLHYTSDQIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQAITP  163 (400)
Q Consensus        84 ~~g~~~~~e~I~it~G~~~~l~~~~~~~~~~Gd~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~  163 (400)
                          ++++|||++|+|++++|.++++++++|||+|++++|+|+.|...++.+|++++.+|.   .+|.+|+|++.+++++
T Consensus        81 ----~v~~~~Ilv~nGs~e~i~l~~~a~~~pgd~Vl~~~P~f~~Y~~~a~~~G~~~~~vp~---~~~~~d~~~l~~~i~~  153 (367)
T PRK02731         81 ----GVDPEQIILGNGSDEILELLARAYLGPGDEVIYSEHAFAVYPIAAQAVGAKPVEVPA---KDYGHDLDAMLAAVTP  153 (367)
T ss_pred             ----CCCHHHEEECCCHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHCCCEEEEECC---CCCCCCHHHHHHHCCC
T ss_conf             ----858111998578999999999998479986444798626899999982988999547---6776596899985587


Q ss_pred             CCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCC
Q ss_conf             12201211354210000123333211122333332011101221100000122332221112333225741465443223
Q gi|254780602|r  164 KTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAM  243 (400)
Q Consensus       164 ~~k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~~  243 (400)
                      ++|++++||||||||.+++.+++++|++.+ ++ ++++|.||+|.+|++++....++ .+.. .++++|+++||||+|++
T Consensus       154 ~tklv~l~nPnNPTG~~~~~~~l~~l~~~~-~~-~~~vviDEaY~ef~~~~~~~~~~-~l~~-~~~n~iv~rSfSK~~gl  229 (367)
T PRK02731        154 RTKLVFIANPNNPTGTYLPAEEVERFLAGV-PP-DVLVVLDEAYAEYVARKDYEDGI-ELVK-EFPNVVVTRTFSKAYGL  229 (367)
T ss_pred             CCCEEEECCCCCCCCCCCCHHHHHHHHHHC-CC-CCEEEEEHHHHHHCCCCCCCCHH-HHHH-HCCCEEEEEECCHHHCC
T ss_conf             886899828999988657569999999854-55-76388411267642576665589-9976-23764799746666516


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEECCCC
Q ss_conf             44544422110122687531001222332222222222223467643222222110000000245530477603302740
Q gi|254780602|r  244 TGLRIGYAAGALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQGVPGIRYMIPDGA  323 (400)
Q Consensus       244 ~G~RiG~~v~~~~li~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~~~~~L~~~~g~~~~~p~g~  323 (400)
                      ||||+||+++++++++.+.+++.  ..+++++.|.++.++|+ .++|+++.++.++++|+.+.+.|+++ |+++.++ +|
T Consensus       230 aGlRlGy~ia~~~~i~~l~~~~~--p~~v~~~aq~aa~aaL~-d~~~~~~~~~~~~~~r~~l~~~L~~~-g~~~~ps-~~  304 (367)
T PRK02731        230 AGLRVGYGIAPPEIIDALNRVRQ--PFNVNSLALAAAVAALD-DDAFVEKSRELNAKGMARLEEFLAEL-GLEYIPS-YG  304 (367)
T ss_pred             CCCCEEEEECCHHHHHHHHHHHC--CCCCCHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHHHHHHHHC-CCEECCC-CC
T ss_conf             88705888669999999999847--66588999999999966-99999999999999999999999978-4988789-86


Q ss_pred             EEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHH
Q ss_conf             899862641023321133224898999999998739799835022899728999629999999999999999986
Q gi|254780602|r  324 FYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGHGPSIRISYAVSDAILEEACVRIKRFCHS  398 (400)
Q Consensus       324 ~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~iRis~~~~~e~l~~al~rl~~~l~~  398 (400)
                      .|+|++++.           ..++.+++++|++ +||+++||+.||.++|+|||+++++| .+..++.|+++|..
T Consensus       305 nFil~~~~~-----------~~~a~~~~~~L~~-~gI~vr~~~~fgl~~~~Risigt~ee-n~~li~al~~~l~e  366 (367)
T PRK02731        305 NFILVDFDD-----------GKDAAAIYEALLK-RGVIVRPLAGYGLPNALRITIGTPEE-NRRFLAALKEFLAQ  366 (367)
T ss_pred             EEEEEECCC-----------CCCHHHHHHHHHH-CCEEEEECCCCCCCCEEEEEECCHHH-HHHHHHHHHHHHHH
T ss_conf             189998899-----------9999999999996-89389858888998969999289999-99999999999850


No 70 
>PRK03158 histidinol-phosphate aminotransferase; Provisional
Probab=100.00  E-value=0  Score=446.54  Aligned_cols=356  Identities=20%  Similarity=0.271  Sum_probs=293.9

Q ss_pred             HHHHHHHHHCCCCH-HHHHHHHHHHHHHCC-CCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             36788987389758-999999999999869-9726656589749889999999999983887569987789899999999
Q gi|254780602|r    2 VFISNILRRVQPSA-TLVAAQRVRDLRSKG-IDVLCLTAGEPDFDMPENVKYAVVRAMERGETKYTAVAGISPLREAIVE   79 (400)
Q Consensus         2 ~~~s~~~~~l~~s~-~~~~~~~~~~~~~~g-~~ii~l~~G~p~~~~p~~i~~a~~~al~~~~~~Y~~~~G~~~lR~aia~   79 (400)
                      |.+-+.++.++|+. -..+.+.+++   .| .++|+|+.+++.|++|+.+++++.++++. ...||+.. ..+||++||+
T Consensus         1 ~~~r~~~~~~~~y~~g~~~~~~~~~---~g~~~ii~ls~Nenp~g~~~~v~~a~~~~~~~-~~~YPd~~-~~~Lr~~iA~   75 (359)
T PRK03158          1 MKVKEQLLGLRPYQPGKPIEEVKRE---YGLSKIVKLASNENPFGCSPRVTEALASEASQ-YALYPDGY-AFELRTKVAK   75 (359)
T ss_pred             CCCCHHHCCCCCCCCCCCHHHHHHH---HCCCCEEEEECCCCCCCCCHHHHHHHHHHHHH-CCCCCCCC-HHHHHHHHHH
T ss_conf             9978344389998999998999987---09997689508999999999999999987873-67696988-8999999999


Q ss_pred             HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHC
Q ss_conf             86421013333223323345433332222222332232222333323222222222222222222222322210333100
Q gi|254780602|r   80 KFRRDNDLHYTSDQIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQ  159 (400)
Q Consensus        80 ~~~~~~g~~~~~e~I~it~G~~~~l~~~~~~~~~~Gd~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~  159 (400)
                      |+      ++++|||++|+|++++|.++++++++|||+|++++|+|+.|...+...|++++.+|+..   +..|++.+.+
T Consensus        76 ~~------gv~~~~I~v~nGs~e~i~~~~~~~~~~g~~vvi~~P~f~~Y~~~a~~~g~~~~~vpl~d---~~~dl~~~~~  146 (359)
T PRK03158         76 HL------GVKEEQLIFGNGSDEVIQIISRALLHEGTNTVMANPTFSQYRHNAVIEGAEVREVPLKD---GIHDLDAMLE  146 (359)
T ss_pred             HH------CCCHHHEEECCCHHHHHHHHHHHHHCCCCEEECCCCEEEHHHHHHHHCCCEEEEECCCC---CCCCHHHHHH
T ss_conf             86------84867799847889999999999807998111379820555999976285379962677---7669999997


Q ss_pred             CCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCC
Q ss_conf             01221220121135421000012333321112233333201110122110000012233222111233322574146544
Q gi|254780602|r  160 AITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSK  239 (400)
Q Consensus       160 ~i~~~~k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK  239 (400)
                      .+++++|+|++||||||||++++.++++++++.+ ++ +++||+||+|.+|++++.. ++...+... ++++|+++||||
T Consensus       147 ~i~~~tklv~l~nPnNPTG~~~~~~~l~~l~~~~-~~-~~~vvvDEaY~ef~~~~~~-~~~~~l~~~-~~nviv~rsfSK  222 (359)
T PRK03158        147 AIDENTKIVWICNPNNPTGTYVEKQKLLAFLEKV-PK-SVLVVLDEAYYEYVTAEDY-PQTLPLLEK-YENLMILRTFSK  222 (359)
T ss_pred             HCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHC-CC-CEEEEEEHHHHHHHCCCCC-CCHHHHHHH-CCCEEEECCCCH
T ss_conf             5075887899748999988876523489999748-57-7299972278887325786-203567653-256236515654


Q ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEE
Q ss_conf             32234454442211012268753100122233222222222222346764322222211000000024553047760330
Q gi|254780602|r  240 AYAMTGLRIGYAAGALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQGVPGIRYMI  319 (400)
Q Consensus       240 ~~~~~G~RiG~~v~~~~li~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~~~~~L~~~~g~~~~~  319 (400)
                      +|+|||||+||+++++++++++.+.+.  .++++++.|.++.++|+ .++|+++.++.++++|+.+.+.++.. |+++.+
T Consensus       223 ~~~laGlRlGy~ia~~~li~~l~~~~~--~~~v~~~aq~aa~aal~-d~~~~~~~~~~~~~~~~~~~~~l~~~-g~~~~p  298 (359)
T PRK03158        223 AYGLAALRVGYGIADEELIGQLEPARL--PFNTSTIAQAAALAALE-DQAFIQECVKKNAEGLKQYYAFCKEY-GVFYYP  298 (359)
T ss_pred             HCCCCCCCCEECCCCHHHHHHHHHHCC--CCCCHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHHHHHHHHC-CCEECC
T ss_conf             106888852203189999999998538--86856999999999957-99999999999999999999999868-888999


Q ss_pred             CCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCCCCEEEEEEECCHHHHHHHHHHHHHH
Q ss_conf             2740899862641023321133224898999999998739799835022899728999629999999999999999
Q gi|254780602|r  320 PDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGHGPSIRISYAVSDAILEEACVRIKRF  395 (400)
Q Consensus       320 p~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~iRis~~~~~e~l~~al~rl~~~  395 (400)
                      ++ |.|+|+++.             .++.++++.|++ +||+|+||+.||.++|+|||+++++| .+.-++.|++.
T Consensus       299 s~-anF~l~~~~-------------~~~~~~~~~L~~-~gi~Vr~g~~fg~~~~iRIsvgt~~e-n~~ll~aL~~i  358 (359)
T PRK03158        299 SQ-TNFVLIDLG-------------IPGDEVFEYLLK-KGYIVRSGAALGFPTGIRITVGLKEE-NDEIIELLAEL  358 (359)
T ss_pred             CC-CCEEEEECC-------------CCHHHHHHHHHH-CCEEEEECCCCCCCCEEEEEECCHHH-HHHHHHHHHHH
T ss_conf             98-508998689-------------999999999981-99399968989998989999489999-99999999986


No 71 
>PRK05166 histidinol-phosphate aminotransferase; Provisional
Probab=100.00  E-value=0  Score=444.65  Aligned_cols=360  Identities=22%  Similarity=0.261  Sum_probs=293.4

Q ss_pred             HHHHHHHHCCCCHHH-HHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             678898738975899-9999999999869972665658974988999999999998388756998778989999999986
Q gi|254780602|r    3 FISNILRRVQPSATL-VAAQRVRDLRSKGIDVLCLTAGEPDFDMPENVKYAVVRAMERGETKYTAVAGISPLREAIVEKF   81 (400)
Q Consensus         3 ~~s~~~~~l~~s~~~-~~~~~~~~~~~~g~~ii~l~~G~p~~~~p~~i~~a~~~al~~~~~~Y~~~~G~~~lR~aia~~~   81 (400)
                      ++-+-+++|+||..- .+.+..+  +..+.++|+|+.++..|+|||.+++++.++++. .+.||+..+ .+||++||+++
T Consensus        11 ~~r~~i~~l~pY~~~~~~~~~~~--~~~~~~~i~L~~NeNP~gpsp~v~~a~~~~~~~-~~rYPd~~~-~~Lr~aiA~~~   86 (374)
T PRK05166         11 LIRPEVRSLPPYNAGLTIEEVRA--RYHVPRIAKLGSNENPLGPSPALARLFPDIAEL-LRLYPDPQG-RALRAEIAASF   86 (374)
T ss_pred             HHCHHHCCCCCCCCCCCHHHHHH--HHCCCCEEEECCCCCCCCCCHHHHHHHHHHHHH-CCCCCCCCH-HHHHHHHHHHH
T ss_conf             63766447899999998699998--738998588069999989899999999986875-376979878-99999999996


Q ss_pred             HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCC
Q ss_conf             42101333322332334543333222222233223222233332322222222222222222222232221033310001
Q gi|254780602|r   82 RRDNDLHYTSDQIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQAI  161 (400)
Q Consensus        82 ~~~~g~~~~~e~I~it~G~~~~l~~~~~~~~~~Gd~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i  161 (400)
                            ++++|||++|+|++++|.++++++++|||+|++++|+|+.|...++.+|++++.+|++++  |.+|++++.+++
T Consensus        87 ------gv~~~~I~v~nGs~e~i~~~~~a~~~pGd~Vl~~~Ptf~~Y~~~~~~~G~~v~~vpl~~~--~~~d~~~l~~ai  158 (374)
T PRK05166         87 ------GVPTDQIILGNGSEDLIAVICRAVLRPGDRVVTLYPSFPLHEDYPTLMGARVERVTVTPD--LTVDVDALLAAV  158 (374)
T ss_pred             ------CCCHHHEEECCCHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHCCEEEEEECCCC--CCCCHHHHHHHH
T ss_conf             ------838301998568999999999999739998987788777899999982981599736866--797999999861


Q ss_pred             CCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCC
Q ss_conf             22122012113542100001233332111223333320111012211000001223322211123332257414654432
Q gi|254780602|r  162 TPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAY  241 (400)
Q Consensus       162 ~~~~k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~  241 (400)
                      ++++|+++|||||||||++++++++++|++.| ++ +.+||+||+|.+|++++....++. ...+..+++|+++||||+|
T Consensus       159 ~~~tklv~l~nPnNPTG~~~~~~~l~~l~~~~-~~-~~~vvvDEaY~ef~~~~~~~~~~~-~~~~~~~n~IvlrSfSK~~  235 (374)
T PRK05166        159 ARKPRMLMFSNPMNPVGSWLTPGALARLLDAV-PP-ETLIVVDEAYAEYAAGDDYPSALT-LLKNRGLPWVVLRTFSKAY  235 (374)
T ss_pred             CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHC-CC-CEEEEECHHHHHHHCCCCCCCHHH-HHHHCCCCEEEEEECCHHH
T ss_conf             56987899828989987658847799999745-88-739995047899752788664798-8620478779999555655


Q ss_pred             CCCCCCCCCC-CCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEC
Q ss_conf             2344544422-110122687531001222332222222222223467643222222110000000245530477603302
Q gi|254780602|r  242 AMTGLRIGYA-AGALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQGVPGIRYMIP  320 (400)
Q Consensus       242 ~~~G~RiG~~-v~~~~li~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~~~~~L~~~~g~~~~~p  320 (400)
                      ++||||+||+ ++++++++.+.+.+.  ..+++.+.|.++..+|+ .++|+++.++.+.++|+.+.+.|+++ |+++.++
T Consensus       236 glaGlRvGyai~~~~~i~~~l~~~~~--~~~v~~~aq~aa~aaL~-~~~~~~~~~~~~~~~R~~l~~~L~~~-g~~v~ps  311 (374)
T PRK05166        236 GLAGLRIGYGLVSDPSLRAFLDRVRT--PFNANGIAQAAALAALD-DEEHLAKGVALALAERERMKKELAEM-GYRVAPS  311 (374)
T ss_pred             HCCCCCEEEEECCCHHHHHHHHHHCC--CCCCCHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHHHHHHHHC-CCEECCC
T ss_conf             15777504541592999999998349--82869999999999856-99999999999999999999999977-7948998


Q ss_pred             CCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHH
Q ss_conf             74089986264102332113322489899999999873979983502289972899962999999999999999998
Q gi|254780602|r  321 DGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGHGPSIRISYAVSDAILEEACVRIKRFCH  397 (400)
Q Consensus       321 ~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~iRis~~~~~e~l~~al~rl~~~l~  397 (400)
                      +|. |+|+++.             .++.+++++|++ +||+|+||+.||.++|+|||+++++|+ +.-++.|++.+.
T Consensus       312 ~an-Filv~~~-------------~~~~~~~~~L~~-~gI~Vr~~~~~gl~~~lRIsvgt~een-~rll~aL~~il~  372 (374)
T PRK05166        312 RAN-FLFFDAR-------------TDASALAEALLR-QGVIVKPWKQPGFETYIRVSIGSPEEN-DHFMAALDEVLA  372 (374)
T ss_pred             CCE-EEEEECC-------------CCHHHHHHHHHH-CCCEEEECCCCCCCCEEEEEECCHHHH-HHHHHHHHHHHH
T ss_conf             661-8998689-------------999999999984-891998589899999899981899999-999999999985


No 72 
>PRK03321 putative aminotransferase; Provisional
Probab=100.00  E-value=0  Score=439.09  Aligned_cols=348  Identities=22%  Similarity=0.350  Sum_probs=289.8

Q ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             78898738975899999999999986997266565897498899999999999838875699877898999999998642
Q gi|254780602|r    4 ISNILRRVQPSATLVAAQRVRDLRSKGIDVLCLTAGEPDFDMPENVKYAVVRAMERGETKYTAVAGISPLREAIVEKFRR   83 (400)
Q Consensus         4 ~s~~~~~l~~s~~~~~~~~~~~~~~~g~~ii~l~~G~p~~~~p~~i~~a~~~al~~~~~~Y~~~~G~~~lR~aia~~~~~   83 (400)
                      +.+.++.|+||.-    .      ..-.++|+|+.+++.|+|||.+++++.++++ +.+.||+ .|..+||++||+|+  
T Consensus         5 ~r~~i~~l~~Y~p----g------~~~~~~i~ls~Nenp~gp~p~v~~ai~~~~~-~~~~YPd-~~~~~Lr~aiA~~~--   70 (352)
T PRK03321          5 LRPELAGLPAYVP----G------KTVPGAIKLSSNETPFGPLPSVRAAIAEATD-GLNRYPD-NGAVELRAALAEHL--   70 (352)
T ss_pred             CCHHHHCCCCCCC----C------CCCCCCEECCCCCCCCCCCHHHHHHHHHHHH-HCCCCCC-CCHHHHHHHHHHHH--
T ss_conf             0356517999899----8------9999937802969999988999999998653-0677989-98699999999987--


Q ss_pred             HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCC
Q ss_conf             10133332233233454333322222223322322223333232222222222222222222223222103331000122
Q gi|254780602|r   84 DNDLHYTSDQIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQAITP  163 (400)
Q Consensus        84 ~~g~~~~~e~I~it~G~~~~l~~~~~~~~~~Gd~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~  163 (400)
                          ++++|+|++|+|++++|..+++++++|||+|++++|+|+.|...++.+|++++.+++.++.+  .|++.+.+++++
T Consensus        71 ----~v~~~~I~v~nGs~e~i~~~~~~~~~~gd~Vl~p~P~f~~Y~~~~~~~G~~~~~v~l~~~~~--~dl~~l~~~i~~  144 (352)
T PRK03321         71 ----GVAPEHVAVGCGSVALCQQLVQATAGPGDEVVFAWRSFEAYPILVQVAGATPVQVPLTDDHT--HDLDAMAAAITD  144 (352)
T ss_pred             ----CCCHHHEEECCCHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHCCCEEEEEECCCCCC--CCHHHHHHHCCC
T ss_conf             ----87858799874699999999999817979899888853268999998098799986675557--883789986588


Q ss_pred             CCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCC
Q ss_conf             12201211354210000123333211122333332011101221100000122332221112333225741465443223
Q gi|254780602|r  164 KTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAM  243 (400)
Q Consensus       164 ~~k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~~  243 (400)
                      ++|++++||||||||.++++++++++++.| ++ +++||+||+|.+|++++..+.++ .+..+ ++|+|+++||||.|++
T Consensus       145 ~~~lv~l~nPnNPTG~~~~~~~l~~l~~~~-~~-~~~vvvDEaY~~f~~~~~~~~~~-~~~~~-~~nlivlrSfSK~~gl  220 (352)
T PRK03321        145 RTRLIFVCNPNNPTGTVVTPAALARFVAAV-PA-DVLVVLDEAYVEYIRDGDVPDGL-ELVRD-HPNVVVLRTFSKAYGL  220 (352)
T ss_pred             CCCEEEECCCCCCCCCCCCCHHHHHHHHHC-CC-CCEEEEHHHHHHHHHCCCCCCHH-HHHHH-CCEEEEECCCCCCCCC
T ss_conf             875899849999730136837589999755-47-84797224089884277876278-87520-4525540254413378


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEECCCC
Q ss_conf             44544422110122687531001222332222222222223467643222222110000000245530477603302740
Q gi|254780602|r  244 TGLRIGYAAGALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQGVPGIRYMIPDGA  323 (400)
Q Consensus       244 ~G~RiG~~v~~~~li~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~~~~~L~~~~g~~~~~p~g~  323 (400)
                      ||||+||+++++++++.+.+.+.  ..+++.+.|.++..+|++ ++++.+.++.+.++|+.+.+.|++ .|+++.+++|.
T Consensus       221 aGlRlGy~ia~~~~i~~l~~~~~--p~~v~~~aq~aa~aaL~~-~~~~~~~~~~~~~~R~~l~~~L~~-~g~~v~ps~an  296 (352)
T PRK03321        221 AGLRVGYAVGHPEVITALRKVAV--PFSVNSLAQAAAIASLEA-ADELLERVDAVVAERDRVSAALRA-AGWTVPPSQAN  296 (352)
T ss_pred             CCCCCEEEECCHHHHHHHHHHCC--CCCCHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHHHHHHHHH-CCCEECCCCCE
T ss_conf             98853320289999999998458--988559999999999649-299999999999999999999997-85858899874


Q ss_pred             EEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHC
Q ss_conf             8998626410233211332248989999999987397998350228997289996299999999999999999860
Q gi|254780602|r  324 FYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGHGPSIRISYAVSDAILEEACVRIKRFCHSL  399 (400)
Q Consensus       324 ~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~iRis~~~~~e~l~~al~rl~~~l~~l  399 (400)
                       |+|+++.             .++.++++.| .++||+|+|   |+. .++|||+++++|+ +.-++.|++|...|
T Consensus       297 -Fi~~~~~-------------~~~~~~~~~L-~~~GIlVR~---~~~-~~~RIsvgt~een-~~ll~Alk~~~~g~  352 (352)
T PRK03321        297 -FVWLPLG-------------ERTADFAAAA-AEAGVVVRP---FGG-EGVRVTVGAPEEN-DAFLRAARAWRAGL  352 (352)
T ss_pred             -EEEEECC-------------CCHHHHHHHH-HHCCEEEEE---CCC-CEEEEEECCHHHH-HHHHHHHHHHHCCC
T ss_conf             -9999518-------------9999999999-819939986---699-9189980999999-99999999997249


No 73 
>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]
Probab=100.00  E-value=0  Score=430.24  Aligned_cols=350  Identities=25%  Similarity=0.383  Sum_probs=303.7

Q ss_pred             CCEEECCCCCCCCCC--CHHHHHHHHHHHHC---C-CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf             972665658974988--99999999999838---8-75699877898999999998642101333322332334543333
Q gi|254780602|r   31 IDVLCLTAGEPDFDM--PENVKYAVVRAMER---G-ETKYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVI  104 (400)
Q Consensus        31 ~~ii~l~~G~p~~~~--p~~i~~a~~~al~~---~-~~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l  104 (400)
                      .++++|+.|.|+...  -....+++.+.++.   . ..+|.++.|.++||++|++|+....|+.+++|||++|+|+++||
T Consensus        89 ~~~i~f~~g~p~~~~fp~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~LR~~ia~~l~~~~g~~~~~~~IiiT~G~q~al  168 (459)
T COG1167          89 PSVIDFAGGLPDPSLFPLEALRRALARVLRNYGASLALQYGPTAGLPELREAIAAYLLARRGISCEPEQIVITSGAQQAL  168 (459)
T ss_pred             CCCCCCCCCCCCCHHCCHHHHHHHHHHHHHHCCHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHEEECCCHHHHH
T ss_conf             75547688998810188899999999998505612332268768889999999999999749988830389806499999


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCC-CCCCEEEC-CCCCCCCCCCC
Q ss_conf             22222223322322223333232222222222222222222223222103331000122-12201211-35421000012
Q gi|254780602|r  105 FNALMATVNMGDEVLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQAITP-KTKWLFLN-SPSNPSGVVYS  182 (400)
Q Consensus       105 ~~~~~~~~~~Gd~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~-~~k~i~l~-nP~NPTG~v~s  182 (400)
                      .++++.+++|||.|++++|+|+...++++..|.+++.+|+++++   +|+|+|++.+.. ++|++|++ +-|||||.+||
T Consensus       169 ~l~~~~l~~pGd~v~vE~PtY~~~~~~~~~~g~~~~~vp~d~~G---~~~e~le~~~~~~~~k~~y~~P~~qNPtG~tms  245 (459)
T COG1167         169 DLLLRLLLDPGDTVLVEDPTYPGALQALEALGARVIPVPVDEDG---IDPEALEEALAQWKPKAVYVTPTFQNPTGVTMS  245 (459)
T ss_pred             HHHHHHHCCCCCEEEECCCCHHHHHHHHHHCCCCEEEECCCCCC---CCHHHHHHHHHCCCCCEEEECCCCCCCCCCCCC
T ss_conf             99999847999999989998289999999869947860678889---897999999850697289978896388987459


Q ss_pred             CCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             33332111223333320111012211000001223322211123332257414654432234454442211012268753
Q gi|254780602|r  183 QNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTGLRIGYAAGALSLIKSMI  262 (400)
Q Consensus       183 ~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~v~~~~li~~l~  262 (400)
                      .+++++|++++ +++|++||+||.|++|.|++.+.+++.+++.  .+|||+++||||+++ ||+|+||+++|+++++++.
T Consensus       246 ~~rR~~Ll~lA-~~~~~~IIEDD~y~el~~~~~p~~~l~~ld~--~~rViy~gSFSK~l~-PglRlG~vv~p~~~~~~~~  321 (459)
T COG1167         246 LERRKALLALA-EKYDVLIIEDDYYGELRYDGPPPPPLKALDA--PGRVIYLGSFSKTLA-PGLRLGYVVAPPELIEKLL  321 (459)
T ss_pred             HHHHHHHHHHH-HHCCCEEEEECCCHHHCCCCCCCCCHHHHCC--CCCEEEECCCHHHHC-CCCCEEEEECCHHHHHHHH
T ss_conf             99999999999-9759879986774332158899834576289--997899913266514-6755499972999999999


Q ss_pred             HHCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCHHHHHHCCC--CCEEEECCCCEEEEEECCCCCCCCC
Q ss_conf             1001222332222222222223467--64322222211000000024553047--7603302740899862641023321
Q gi|254780602|r  263 VLQGQQTSGACSIAQWAAVEALNGP--QDFVVNNRKIFEYRRDLCVAQLQGVP--GIRYMIPDGAFYLYPSCQDLIGKKS  338 (400)
Q Consensus       263 ~~~~~~~~~~~~~~q~a~~~~l~~~--~~~~~~~~~~~~~~r~~~~~~L~~~~--g~~~~~p~g~~y~~~~~~~~~~~~~  338 (400)
                      ..+.....+++.+.|.++...+..+  +.|+.++|..|++||+.+.+.|++..  +.++..|+||||+|+++++.     
T Consensus       322 ~~k~~~~~~~s~~~Q~~la~~l~~G~~~~hl~~lR~~y~~rr~~l~~~L~~~~~~~~~~~~p~gG~flwl~l~~~-----  396 (459)
T COG1167         322 RLKQAADLGPSSLSQAALAAFLLSGHYDRHLRRLRREYARRRDALLEALAEYLPELATWTRPEGGLFLWLELPEG-----  396 (459)
T ss_pred             HHHHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCEEEEEEECCCC-----
T ss_conf             998762569989999999999972859999999999999999999999997478763772699558999986998-----


Q ss_pred             CCCCCCCCHHHHHHHHHHHCCEEEEC-CCCCCC----CCEEEEEEE-CCHHHHHHHHHHHHHHHHHC
Q ss_conf             13322489899999999873979983-502289----972899962-99999999999999999860
Q gi|254780602|r  339 PSGDVIRTDLDFVNGLLEIEKVAVVQ-GSSFGH----GPSIRISYA-VSDAILEEACVRIKRFCHSL  399 (400)
Q Consensus       339 ~~~~~~~~~~~~~~~Ll~~~gV~v~p-G~~Fg~----~~~iRis~~-~~~e~l~~al~rl~~~l~~l  399 (400)
                            .++.++.... .++||.+.| |..|..    .+++|++|+ .+++++++++++|.+.+..+
T Consensus       397 ------~~~~~l~~~a-~~~gv~i~~~g~~f~~~~~~~~~~Rl~~s~~~~e~i~~gi~~l~~~~~~~  456 (459)
T COG1167         397 ------IDARELLAAA-LEKGVVVTPLGSAFSADGDPRNGLRLSFSSPSEEEIEEGIKRLAALLREA  456 (459)
T ss_pred             ------CCHHHHHHHH-HHCCCEEECCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             ------8889999999-98699794588663578988982899889899999999999999999976


No 74 
>PRK06358 threonine-phosphate decarboxylase; Provisional
Probab=100.00  E-value=0  Score=426.39  Aligned_cols=344  Identities=18%  Similarity=0.342  Sum_probs=284.0

Q ss_pred             HHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf             99999999986997266565897498899999999999838875699877898999999998642101333322332334
Q gi|254780602|r   19 AAQRVRDLRSKGIDVLCLTAGEPDFDMPENVKYAVVRAMERGETKYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGT   98 (400)
Q Consensus        19 ~~~~~~~~~~~g~~ii~l~~G~p~~~~p~~i~~a~~~al~~~~~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~e~I~it~   98 (400)
                      +.+.++++-....|||+|+.+++.+++|+.+++++.+++++ ...||+. +..+||++||+|+      .+++++|++|+
T Consensus         7 i~~~~~~~G~~~~~iidls~NeNP~g~p~~v~~a~~~~~~~-l~~YPd~-~~~~Lr~aiA~~~------gv~~~~I~~gn   78 (354)
T PRK06358          7 INEIARQHGLTKNMILDFSANINPLGVPESVKDAITENLDK-LVEYPDI-DYLELRKRIASFE------QLDLENVILGN   78 (354)
T ss_pred             HHHHHHHCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHH-HCCCCCC-CHHHHHHHHHHHH------CCCHHHEEECC
T ss_conf             99999980969464888649998988899999999998766-1018999-7799999999987------83879999868


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEECCCCCCCC
Q ss_conf             54333322222223322322223333232222222222222222222223222103331000122122012113542100
Q gi|254780602|r   99 GAKHVIFNALMATVNMGDEVLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSG  178 (400)
Q Consensus        99 G~~~~l~~~~~~~~~~Gd~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~k~i~l~nP~NPTG  178 (400)
                      |++++|.++++++  .+++|+++.|+|+.|...++..|++++.+++.++++|.+|.+.++ .+++++|++++||||||||
T Consensus        79 Gs~e~i~~~~~~~--~~~~v~i~~Ptf~~Y~~~~~~~g~~v~~~~l~~~~~~~~~~~~l~-~~~~~~~~v~l~nPnNPTG  155 (354)
T PRK06358         79 GAAEVIFNIVRVL--KPKKVLILAPTFSEYERALKSVDAEVIYYELKEETNFAINEDVLE-KITEEIDLIFLCNPNNPTG  155 (354)
T ss_pred             CHHHHHHHHHHHC--CCCEEEEECCCHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHH-HCCCCCCEEEEECCCCCCC
T ss_conf             7899999999861--899699979887999999998498678997770038887999997-4455777899968999866


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCH-HHH
Q ss_conf             0012333321112233333201110122110000012233222111233322574146544322344544422110-122
Q gi|254780602|r  179 VVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTGLRIGYAAGA-LSL  257 (400)
Q Consensus       179 ~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~v~~-~~l  257 (400)
                      +++++++++++++.| ++++++||+||+|.+|++++.. .|+...... ++|+|+++||||+|++||||+||++++ +.+
T Consensus       156 ~~~~~~~l~~l~~~~-~~~~~~vviDEaY~ef~~~~~~-~s~~~~~~~-~~nlivlrSfSK~~glaGlRiGy~i~~~~~i  232 (354)
T PRK06358        156 QLISKEELKKILEKC-EKKNIYVIIDEAFMDFVEENET-ISMIKYLEN-FKNLIIIRAFTKFFAIPGLRLGYGLCSNKNL  232 (354)
T ss_pred             CCCCHHHHHHHHHHH-HCCCEEEEEECHHHHHHCCCCC-CCHHHHHHH-CCCEEEEEECCHHHCCCCHHEEEEEECCHHH
T ss_conf             406799999999872-0178799996405676368876-667888752-3766899725166367662115654287999


Q ss_pred             HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEECCCCEEEEEECCCCCCCC
Q ss_conf             68753100122233222222222222346764322222211000000024553047760330274089986264102332
Q gi|254780602|r  258 IKSMIVLQGQQTSGACSIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQGVPGIRYMIPDGAFYLYPSCQDLIGKK  337 (400)
Q Consensus       258 i~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~~~~~L~~~~g~~~~~p~g~~y~~~~~~~~~~~~  337 (400)
                      ++.+.+.+.  ..+++++.|.++..+|+ +++|+++.++.++++|+++.+.|++++|+++.+|++. |+|+++.      
T Consensus       233 ~~~l~~~~~--p~~vn~~a~~aa~aal~-d~~~~~~~~~~~~~~R~~l~~~L~~l~g~~v~ps~an-Fvl~~~~------  302 (354)
T PRK06358        233 IEKLNQMRE--PWSINTFADLAGRVLLE-DKNYIKKTIQWIKKEKEFLYNGLSEFKGLTVYEPSVN-FIFFKLN------  302 (354)
T ss_pred             HHHHHHCCC--CCCHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCE-EEEEEEC------
T ss_conf             999984589--98826999999999952-9999999999999999999999874999688899848-9999839------


Q ss_pred             CCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCC--CCEEEEEEECCHHHHHHHHHHHHHHH
Q ss_conf             113322489899999999873979983502289--97289996299999999999999999
Q gi|254780602|r  338 SPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGH--GPSIRISYAVSDAILEEACVRIKRFC  396 (400)
Q Consensus       338 ~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~--~~~iRis~~~~~e~l~~al~rl~~~l  396 (400)
                              ++.+++++|+ ++||+|+||+.|+.  ++|+||++++++| .+.-++.|++.|
T Consensus       303 --------~~~~~~~~L~-~~gIlVr~~~~f~~l~~~~iRisvgt~~e-n~~ll~aL~~iL  353 (354)
T PRK06358        303 --------KPIDLRKELL-LKGILIRSCSNYRGLDENYYRVAVKSRED-NKKLLEALSVIL  353 (354)
T ss_pred             --------CHHHHHHHHH-HCCCEEEECCCCCCCCCCEEEEEECCHHH-HHHHHHHHHHHH
T ss_conf             --------8799999998-59919997887788899979996289999-999999999974


No 75 
>TIGR01141 hisC histidinol-phosphate aminotransferase; InterPro: IPR005861    The biosynthesis of histidine is a central metabolic process in organisms ranging from bacteria to yeast and plants. The seventh step in the synthesis of histidine within eubacteria is carried out by a pyridoxal-5'-phosphate (PLP)-dependent l-histidinol phosphate aminotransferase (HisC, 2.6.1.9 from EC). HisC is a dimeric enzyme with a mass of approximately 80 kDa. Like most PLP-dependent enzymes, each HisC monomer consists of two domains, a larger PLP-binding domain having an alpha/beta/alpha topology, and a smaller domain. An N-terminal arm contributes to the dimerization of the two monomers . ; GO: 0004400 histidinol-phosphate transaminase activity, 0000105 histidine biosynthetic process.
Probab=100.00  E-value=0  Score=427.67  Aligned_cols=363  Identities=22%  Similarity=0.342  Sum_probs=305.5

Q ss_pred             HHHHHCCCCHH-HHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHC-CCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             89873897589-9999999999986997266565897498899999999999838-875699877898999999998642
Q gi|254780602|r    6 NILRRVQPSAT-LVAAQRVRDLRSKGIDVLCLTAGEPDFDMPENVKYAVVRAMER-GETKYTAVAGISPLREAIVEKFRR   83 (400)
Q Consensus         6 ~~~~~l~~s~~-~~~~~~~~~~~~~g~~ii~l~~G~p~~~~p~~i~~a~~~al~~-~~~~Y~~~~G~~~lR~aia~~~~~   83 (400)
                      +.++.+.||-. ..|-+-+++.--+-.++|.|+..|..|++|+.+++++.+++++ ..+.||++.+ .+||+++|+++. 
T Consensus         2 ~~i~~l~pY~~GK~iee~ar~~g~~~~~~ikL~sNEnP~gp~~~~~~~~~~~l~~a~l~RYPdp~~-~~L~~~lA~~~~-   79 (377)
T TIGR01141         2 PKIKNLSPYQPGKPIEEIARELGGKPAEVIKLNSNENPYGPPEKAKEALRAELKEAKLHRYPDPDP-AELKQALAKYLG-   79 (377)
T ss_pred             CCCCCCCCCCCCCCHHHCCCCCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCH-HHHHHHHHHHHC-
T ss_conf             401014678877851110301378963221413678899888899999999985087867989866-899999999828-


Q ss_pred             HCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHC-C
Q ss_conf             10133332233233-454333322222223322-32222333323222222222222222222222322210333100-0
Q gi|254780602|r   84 DNDLHYTSDQIIVG-TGAKHVIFNALMATVNMG-DEVLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQ-A  160 (400)
Q Consensus        84 ~~g~~~~~e~I~it-~G~~~~l~~~~~~~~~~G-d~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~-~  160 (400)
                         ..+++|||+++ +||.++|.++++++|+|| |.|+++.|+|..|...++..|++++.++++.+..|..|++++.. .
T Consensus        80 ---~~v~~eqi~~GGnGsDe~I~~l~raf~~PGk~~~l~~~Pty~mY~~~A~~~g~~~~~~~~~~~~~~~~d~~~~~~a~  156 (377)
T TIGR01141        80 ---KKVDPEQILLGGNGSDEIIDLLIRAFLEPGKDAVLVPPPTYSMYEISAKIHGAEVKKVPLDEDADGQLDLEDILVAA  156 (377)
T ss_pred             ---CCCCCCCEEEECCCHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHH
T ss_conf             ---89871403784156068999999985276654577617750036765532071479974056766755537899998


Q ss_pred             CCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCC
Q ss_conf             12212201211354210000123333211122333332011101221100000122332221112333225741465443
Q gi|254780602|r  161 ITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKA  240 (400)
Q Consensus       161 i~~~~k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~  240 (400)
                      +.+++|+||||+||||||..++.++++++++.. .+.+.+||.||||.+|+-++ ...+...+..+ ++|+++++||||.
T Consensus       157 ~~~~~kLvF~c~PNNPTG~~~~~~~i~~~l~~~-~~g~~lVV~DEAY~EF~~~~-~~~~~~~ll~~-ypNL~vlRTlSKa  233 (377)
T TIGR01141       157 IDEKPKLVFLCSPNNPTGNLLSREDIEAVLERT-PEGDALVVVDEAYGEFSGEE-DEPSVLPLLAE-YPNLIVLRTLSKA  233 (377)
T ss_pred             HHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHC-CCCCEEEEEEECCCCCCCCC-CCCCCCCHHHH-CCCEEEEHHHHHH
T ss_conf             626940899878868867526989999999717-69973899864234578886-77653231420-7987998106788


Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCHHHHHHCCCCCE-E
Q ss_conf             2234454442211012268753100122233222222222222346764--322222211000000024553047760-3
Q gi|254780602|r  241 YAMTGLRIGYAAGALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGPQD--FVVNNRKIFEYRRDLCVAQLQGVPGIR-Y  317 (400)
Q Consensus       241 ~~~~G~RiG~~v~~~~li~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~--~~~~~~~~~~~~r~~~~~~L~~~~g~~-~  317 (400)
                      ||++|+||||.++++++++.|.+++.  .+++|.++|.+|+++|++ ++  ++++..+...+.|+++++.|+++++++ +
T Consensus       234 fgLAG~R~Gy~~a~~~~i~~l~kvr~--Pfn~~~la~~~A~aAL~~-~~~~~~~~~~~~~~~~Re~l~~~L~~~~~~~~v  310 (377)
T TIGR01141       234 FGLAGLRVGYAIANAEIIDALNKVRA--PFNLSRLAQAAAIAALRD-DDLQFIEKTVEEINAERERLYDELKKLEGLEDV  310 (377)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHCCC--CCCCCHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCE
T ss_conf             77888889886069999999985168--878897999999985271-467999999999998999999998714300014


Q ss_pred             EECCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCC-CC-CCEEEEEEECCHHHHHHHHHHH
Q ss_conf             302740899862641023321133224898999999998739799835022-89-9728999629999999999999
Q gi|254780602|r  318 MIPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSF-GH-GPSIRISYAVSDAILEEACVRI  392 (400)
Q Consensus       318 ~~p~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~F-g~-~~~iRis~~~~~e~l~~al~rl  392 (400)
                      .+++|-| +.++++.          ..++..++++.|+ ++||+|++...| |. ++|+|||.|+++|. ++-++.|
T Consensus       311 ~~S~aNF-~L~~~~~----------~~~~a~~~~~~L~-~~GiivR~~~~~~Gl~~~~lRITvGt~eEn-~~~l~~l  374 (377)
T TIGR01141       311 YPSDANF-VLIRFPR----------GGLDAEALFEALL-EKGIIVRDLNSFPGLLPNCLRITVGTREEN-DRFLEAL  374 (377)
T ss_pred             ECCCCCE-EEEECCC----------CCCCHHHHHHHHH-HCCEEEEECCCCCCCCCCCEEEEECCHHHH-HHHHHHH
T ss_conf             2577637-9996277----------6777799999998-678068606557887776268972887999-9999998


No 76 
>PRK05387 histidinol-phosphate aminotransferase; Provisional
Probab=100.00  E-value=0  Score=422.63  Aligned_cols=349  Identities=19%  Similarity=0.292  Sum_probs=288.7

Q ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             67889873897589999999999998699726656589749889999999999983887569987789899999999864
Q gi|254780602|r    3 FISNILRRVQPSATLVAAQRVRDLRSKGIDVLCLTAGEPDFDMPENVKYAVVRAMERGETKYTAVAGISPLREAIVEKFR   82 (400)
Q Consensus         3 ~~s~~~~~l~~s~~~~~~~~~~~~~~~g~~ii~l~~G~p~~~~p~~i~~a~~~al~~~~~~Y~~~~G~~~lR~aia~~~~   82 (400)
                      ++++.+++|+|+..-    +    +.++.++|+|+.+++.|+|||.+++|+++++.++.+.||+.. ..+||++||+++ 
T Consensus         4 ~~~p~i~~l~pY~~~----~----~~~~~~ii~L~~NEnP~gpsp~v~~a~~~~~~~~~~~YPd~~-~~~Lr~~iA~~~-   73 (353)
T PRK05387          4 YWSPIVRQLEPYVPG----E----QPKLANLIKLNTNENPYPPSPKVLEAIRAALGDDLRLYPDPD-ATALRQAIAAYY-   73 (353)
T ss_pred             CCCCCCCCCCCCCCC----C----CCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC-HHHHHHHHHHHH-
T ss_conf             336443468999998----7----679998479409799999999999999996752524799997-899999999997-


Q ss_pred             HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCC
Q ss_conf             21013333223323345433332222222332232222333323222222222222222222222322210333100012
Q gi|254780602|r   83 RDNDLHYTSDQIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQAIT  162 (400)
Q Consensus        83 ~~~g~~~~~e~I~it~G~~~~l~~~~~~~~~~Gd~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~  162 (400)
                           .+++|+|++|+|+.++|.++++++++|||+|++++|+|+.|...++..|++++.+|+++  +|.+|++++.+   
T Consensus        74 -----gv~~~~I~vg~Gs~e~i~~~~~~~~~~gd~Vl~p~Pty~~Y~~~a~~~g~~~~~vp~~~--~~~~~~~~~~~---  143 (353)
T PRK05387         74 -----GVSPEQVFVGNGSDEVLAHAFLAFFKHDRPLLFPDITYSFYPVYAGLYGIPYEEVPLDD--DFSIDVEDYLR---  143 (353)
T ss_pred             -----CCCHHHEEECCCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCEEEEEECCC--CCCCCHHHHHC---
T ss_conf             -----86858899857899999999999618998664078770369999998095489950564--34579999726---


Q ss_pred             CCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCC
Q ss_conf             21220121135421000012333321112233333201110122110000012233222111233322574146544322
Q gi|254780602|r  163 PKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYA  242 (400)
Q Consensus       163 ~~~k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~  242 (400)
                       .++.|++||||||||+++++++++++++   ++.+.+||+||+|.+|.  +....+   +... ++|+|+++||||.|+
T Consensus       144 -~~~~v~l~nPnNPTG~~~~~~~l~~ll~---~~~~~~vvvDEAY~ef~--~~s~~~---l~~~-~~nlivlrTfSK~~g  213 (353)
T PRK05387        144 -PNGGIIFPNPNAPTGIALPLADIERILA---ANPDSVVVIDEAYVDFG--GESAIP---LIDR-YPNLLVVQTLSKSRS  213 (353)
T ss_pred             -CCCEEEEECCCCCCCCCCCHHHHHHHHH---HCCCCEEEEECCHHHCC--CCCHHH---HHHC-CCCEEEEEECCHHHC
T ss_conf             -3676998489998788689999999997---48998899605356418--754024---5650-787787630416308


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEECC
Q ss_conf             34454442211012268753100122-23322222222222234676432222221100000002455304776033027
Q gi|254780602|r  243 MTGLRIGYAAGALSLIKSMIVLQGQQ-TSGACSIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQGVPGIRYMIPD  321 (400)
Q Consensus       243 ~~G~RiG~~v~~~~li~~l~~~~~~~-~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~~~~~L~~~~g~~~~~p~  321 (400)
                      +||||+||+++++++++.+.+++... ..+++.+.|.++.++|+ +++|+++.++.+.+.|+.+.+.|+++ |+++.++ 
T Consensus       214 laGlRlGy~ia~~~li~~l~~~~~~~~~~~v~~~a~~aa~aal~-d~~~~~~~~~~~~~~R~~l~~~L~~l-g~~v~ps-  290 (353)
T PRK05387        214 LAGLRVGFAIGHPELIEALERVKNSFNSYPLDRLAQAGAIAAIE-DEAYFEETCAKVIATRERLVEELEAL-GFEVLPS-  290 (353)
T ss_pred             CCCCCCEEEECCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHC-CCEECCC-
T ss_conf             77662342106999999999998541677766999999999963-85999999999999999999999968-9878989-


Q ss_pred             CCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHH
Q ss_conf             40899862641023321133224898999999998739799835022899728999629999999999999999986
Q gi|254780602|r  322 GAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGHGPSIRISYAVSDAILEEACVRIKRFCHS  398 (400)
Q Consensus       322 g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~iRis~~~~~e~l~~al~rl~~~l~~  398 (400)
                      ++.|+|++.++            .++.++++.| .++||+|.++..||.++|+|||+++++ +.+.-++.|++.+.+
T Consensus       291 ~anFvl~~~~~------------~~a~~~~~~L-~~~gI~VR~~~~~~l~~~iRisvgt~e-en~~l~~al~~il~a  353 (353)
T PRK05387        291 AANFVFARHPQ------------HDAAALAAAL-RERGIIVRHFNKPRIDQFLRITIGTDE-ECEALVDALKEILAA  353 (353)
T ss_pred             CCCEEEEECCC------------CCHHHHHHHH-HCCCEEEEECCCCCCCCEEEEECCCHH-HHHHHHHHHHHHHCC
T ss_conf             88589998999------------9999999999-809939997998999998999729999-999999999999749


No 77 
>PRK04152 consensus
Probab=100.00  E-value=0  Score=419.23  Aligned_cols=359  Identities=19%  Similarity=0.276  Sum_probs=289.2

Q ss_pred             HHHHHHHHHCCCCH-HHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             36788987389758-99999999999986997266565897498899999999999838875699877898999999998
Q gi|254780602|r    2 VFISNILRRVQPSA-TLVAAQRVRDLRSKGIDVLCLTAGEPDFDMPENVKYAVVRAMERGETKYTAVAGISPLREAIVEK   80 (400)
Q Consensus         2 ~~~s~~~~~l~~s~-~~~~~~~~~~~~~~g~~ii~l~~G~p~~~~p~~i~~a~~~al~~~~~~Y~~~~G~~~lR~aia~~   80 (400)
                      |++.+.+..++|+. -..+.+.++++--..++||+|+.+++.|++|+.+++++.++++. .+.||+. +..+||++||++
T Consensus         1 ~~~~~~i~~~~~y~~G~~i~~~~~~~g~~p~~ii~ls~NeNP~g~p~~~~~ai~~~~~~-~~~YPd~-~~~~Lr~~iA~~   78 (364)
T PRK04152          1 MKFNEFLNNLKTYEAGKPIELVVREYGIDPKDVIKLASNENPFGTSPKVIEAIRKNASK-AHLYPDD-SMFELKSALASK   78 (364)
T ss_pred             CCCCHHHCCCCCCCCCCCHHHHHHHHCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHH-CCCCCCC-CHHHHHHHHHHH
T ss_conf             97056653899989999999999982968124788179999999999999999987873-7679996-799999999998


Q ss_pred             HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCC
Q ss_conf             64210133332233233454333322222223322322223333232222222222222222222223222103331000
Q gi|254780602|r   81 FRRDNDLHYTSDQIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQA  160 (400)
Q Consensus        81 ~~~~~g~~~~~e~I~it~G~~~~l~~~~~~~~~~Gd~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~  160 (400)
                      +      ++++|||++|+|++++|.++++++++|||+|+++.|+|+.|...++.+|++++.++..+     .|++++.+.
T Consensus        79 ~------gv~~~~I~vgnGs~e~i~~~~~~~~~~g~~vl~~~Ptf~~Y~~~a~~~g~~v~~~~~~~-----~dl~~~~~~  147 (364)
T PRK04152         79 F------DVESENIIIGAGSDQVIEFAIHAKLNEKSSVLMAGVTFAMYEIYAKQCGAKIYKTQSVE-----HDLNEFLEL  147 (364)
T ss_pred             H------CCCHHEEEECCCHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHCCCEEEECCCCC-----CCHHHHHHH
T ss_conf             6------95830099856999999999999838998446589872689999998398799668743-----398999998


Q ss_pred             C-CCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCC--CCCCCCCCCCCCCCEEEEECCC
Q ss_conf             1-221220121135421000012333321112233333201110122110000012--2332221112333225741465
Q gi|254780602|r  161 I-TPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNC--QFSNIVNVEPSLYERTLVVNGV  237 (400)
Q Consensus       161 i-~~~~k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~--~~~s~~~~~~~~~~~~i~~~S~  237 (400)
                      + ..++|+|++||||||||++++.++++++++.+ .+ +.++|.||+|.+|.....  .+.+...+.. .++|+|+++||
T Consensus       148 ~~~~~~~lv~l~nPNNPTG~~~~~~~l~~~~~~~-~~-~~~vvvDEAY~ef~~~~~~~~~~~~~~l~~-~~~nlivlrsf  224 (364)
T PRK04152        148 YKSHKPKIIFLCLPNNPLGECLDASEVYKFIKGI-DE-DTLVVIDAAYMEFAKFKDSKKHIEPKELIK-LFPNVIYLGTF  224 (364)
T ss_pred             HHCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHC-CC-CCEEEEEHHHHHHHHCCCCCCCCCHHHHHH-HCCCEEEEECC
T ss_conf             6377985899879999867246651249999754-55-776874167788860377534558899874-27978998326


Q ss_pred             CCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEE
Q ss_conf             44322344544422110122687531001222332222222222223467643222222110000000245530477603
Q gi|254780602|r  238 SKAYAMTGLRIGYAAGALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQGVPGIRY  317 (400)
Q Consensus       238 SK~~~~~G~RiG~~v~~~~li~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~~~~~L~~~~g~~~  317 (400)
                      ||.||+||||+||+++++++++.+.+++.  .+++++++|.++.++|+ .++|+++.++...+.|+.+.+.++. .|+++
T Consensus       225 SK~~glaGlRlGy~ia~~~~i~~l~k~~~--p~~vn~~a~~aa~~aL~-~~~~~~~~~~~~~~er~~~~~~~~~-~g~~~  300 (364)
T PRK04152        225 SKAYGLGGMRVGYGIANAEIISALYKLRP--PFNVTTLSLKAAIEALK-DEEFVEKTLENNFKEMKRYEEFAKE-QGIEF  300 (364)
T ss_pred             HHHCCCCCCCCCCCCCCHHHHHHHHHHCC--CCCCCHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHHHHHHHH-CCCEE
T ss_conf             05237877735201389999999998538--98867999999999937-9999999999999999999999885-88848


Q ss_pred             EECCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCCCCEEEEEEECCHHHHHHHHHHHHHH
Q ss_conf             302740899862641023321133224898999999998739799835022899728999629999999999999999
Q gi|254780602|r  318 MIPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGHGPSIRISYAVSDAILEEACVRIKRF  395 (400)
Q Consensus       318 ~~p~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~iRis~~~~~e~l~~al~rl~~~  395 (400)
                      .+++|.|++ +.+..           ..++.++++.|++ +||+|++++.||. +++|||+++++|+ +.-++.|++.
T Consensus       301 ~ps~aNFil-~~~~~-----------~~~a~~l~~~L~~-~gI~VR~~~~~g~-~~iRIsvg~~een-~~li~aL~~v  363 (364)
T PRK04152        301 IDSYTNFIT-FFFDE-----------RKNSTEISQKLLK-KGIIVRNLKSYGL-NAIRITIGTPEQN-DRVFEELDKE  363 (364)
T ss_pred             CCCCCCEEE-EECCC-----------CCCHHHHHHHHHH-CCEEEEECCCCCC-CEEEEECCCHHHH-HHHHHHHHHH
T ss_conf             999887898-98999-----------9999999999996-8919985798996-9799973999999-9999999975


No 78 
>PRK07392 threonine-phosphate decarboxylase; Validated
Probab=100.00  E-value=0  Score=417.38  Aligned_cols=346  Identities=18%  Similarity=0.253  Sum_probs=283.5

Q ss_pred             HHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf             99999999986997266565897498899999999999838875699877898999999998642101333322332334
Q gi|254780602|r   19 AAQRVRDLRSKGIDVLCLTAGEPDFDMPENVKYAVVRAMERGETKYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGT   98 (400)
Q Consensus        19 ~~~~~~~~~~~g~~ii~l~~G~p~~~~p~~i~~a~~~al~~~~~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~e~I~it~   98 (400)
                      +.+.++++-..-.+||+|+.++..++|||.+++++.+++.+ .+.||+.. ..+||++||+|+      .+++|+|++++
T Consensus        10 i~~~a~~~G~~~~~iidlSsN~NP~gppp~v~~ai~~~~~~-~~~YPd~~-~~~Lr~aiA~~~------gv~~e~I~~gn   81 (358)
T PRK07392         10 LAWAAAIAGCPPSAILDFSASINPLGPPESVIAAIQSALSA-LRHYPDPD-YRELREALAQHH------QLPPEWILPGN   81 (358)
T ss_pred             HHHHHHHHCCCHHHCEECCCCCCCCCCCHHHHHHHHHHHHH-HHHCCCCC-HHHHHHHHHHHH------CCCHHHEEECC
T ss_conf             99999982979998466089999989898999999998888-86489956-899999999985------95888898775


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEECCCCCCCC
Q ss_conf             54333322222223322322223333232222222222222222222223222103331000122122012113542100
Q gi|254780602|r   99 GAKHVIFNALMATVNMGDEVLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSG  178 (400)
Q Consensus        99 G~~~~l~~~~~~~~~~Gd~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~k~i~l~nP~NPTG  178 (400)
                      |++++|.+++++++ +||+|+++.|+|+.|...++.+|++++.+|+.++++|.++.........+++++++|||||||||
T Consensus        82 Gs~Eli~~~~~~~~-~~~~v~i~~Ptf~~Y~~~~~~~g~~v~~vpl~~~~~~~~~~~~~~~~~~~~~~~i~l~nPNNPTG  160 (358)
T PRK07392         82 GAAELLTWAGRELA-QLREVYLLTPAFGDYRRALRAFGATVKELPLPLSGEASLTELQLLPPQLTPNDGLLLNNPHNPTG  160 (358)
T ss_pred             CHHHHHHHHHHHHC-CCCEEEEECCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHCCCCCCEEEECCCCCCCC
T ss_conf             79999999999975-89869995785189999999839889998577555678205678875589987899768999977


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf             00123333211122333332011101221100000122332221112333225741465443223445444221101226
Q gi|254780602|r  179 VVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTGLRIGYAAGALSLI  258 (400)
Q Consensus       179 ~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~v~~~~li  258 (400)
                      .++++++++++++.    + .+||+||+|.+|++++.. .|+..+..+ ++|+|+++||||+|++||||+||++++++++
T Consensus       161 ~~~~~~~l~~l~~~----~-~~vvvDEaY~ef~~~~~~-~s~~~~~~~-~~n~iv~rSfSK~~glaGlRlGy~ia~~~~i  233 (358)
T PRK07392        161 KLWSREAILPLLEQ----F-ALVVVDEAFMDFLPPAAE-QSLIPCLAE-YPNLIILRSLTKFYSLPGLRLGYAIAHPDRL  233 (358)
T ss_pred             CCCCHHHHHHHHHC----C-CEEEEECHHHHHCCCCCC-CCHHHHHHC-CCCEEEEEECHHHHHCCCCCCEEEECCHHHH
T ss_conf             65687999988632----8-999995715541688655-678999753-5867999616287657441000002399999


Q ss_pred             HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEECCCCEEEEEECCCCCCCCC
Q ss_conf             87531001222332222222222223467643222222110000000245530477603302740899862641023321
Q gi|254780602|r  259 KSMIVLQGQQTSGACSIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQGVPGIRYMIPDGAFYLYPSCQDLIGKKS  338 (400)
Q Consensus       259 ~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~~~~~L~~~~g~~~~~p~g~~y~~~~~~~~~~~~~  338 (400)
                      +.+.+++.  ..+++++.|.++.++|+ .++|+++.++.+.++|+.+.+.|++++|+++.++ ++.|+|++++       
T Consensus       234 ~~l~~~~~--p~~vn~~a~~aa~aal~-~~~~~~~~~~~~~~~R~~l~~~L~~l~g~~v~ps-~anF~l~~~~-------  302 (358)
T PRK07392        234 QRWQQWRD--PWPVNGLAAAAAIAALA-DRDFQQQTWAWLPPAREALFQGLASLPGLTPLPS-AANFLLVQSQ-------  302 (358)
T ss_pred             HHHHHHCC--CCCCCHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCC-CCEEEEEECC-------
T ss_conf             99998538--87778999999999825-9999999999999999999999971899778888-5049999769-------


Q ss_pred             CCCCCCCCHHHHHHHHHHHCCEEEECCCCCCC--CCEEEEEEECCHHHHHHHHHHHHHHHHH
Q ss_conf             13322489899999999873979983502289--9728999629999999999999999986
Q gi|254780602|r  339 PSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGH--GPSIRISYAVSDAILEEACVRIKRFCHS  398 (400)
Q Consensus       339 ~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~--~~~iRis~~~~~e~l~~al~rl~~~l~~  398 (400)
                            .++.+++.+|++++||+|.||+.|+.  ++|+|||+++++|+ +.-++.|++.|++
T Consensus       303 ------~~~~~~~~~ll~~~gI~Vr~~~~f~~~g~~~iRisvgt~een-~~li~al~~iLa~  357 (358)
T PRK07392        303 ------GSALQLQEELLQQHRILIRDCLSFPELGDRYFRVAVRTEAEN-QRLLSALAAILAN  357 (358)
T ss_pred             ------CCHHHHHHHHHHCCCEEEEECCCCCCCCCCEEEEEECCHHHH-HHHHHHHHHHHHC
T ss_conf             ------999999999997198899868888888999899983999999-9999999999706


No 79 
>PRK02610 histidinol-phosphate aminotransferase; Provisional
Probab=100.00  E-value=0  Score=409.40  Aligned_cols=359  Identities=21%  Similarity=0.304  Sum_probs=292.8

Q ss_pred             CHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCC--CCCCCCCCCHHHHHHHH
Q ss_conf             9367889873897589999999999998699726656589749889999999999983887--56998778989999999
Q gi|254780602|r    1 MVFISNILRRVQPSATLVAAQRVRDLRSKGIDVLCLTAGEPDFDMPENVKYAVVRAMERGE--TKYTAVAGISPLREAIV   78 (400)
Q Consensus         1 m~~~s~~~~~l~~s~~~~~~~~~~~~~~~g~~ii~l~~G~p~~~~p~~i~~a~~~al~~~~--~~Y~~~~G~~~lR~aia   78 (400)
                      |.++.+.+++++||..-    +.   .....++|.|+.+++.|++|+.+++++.+++.++.  +.||+. +..+||++||
T Consensus         2 ~~~~r~~i~~l~~Y~p~----~~---~~~~~~~ikL~~NEnp~g~p~~v~eai~~~~~~~~~~~rYPd~-~~~~Lr~aiA   73 (369)
T PRK02610          2 LPFLRSDLAQLKAYHPH----PS---GDTAPALDRLDTNESPYDLPTDLKQKLAWLYQQGIASNRYPDG-GHLALKQAIA   73 (369)
T ss_pred             CCCCCHHHHCCCCCCCC----CC---CCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHCCHHCCCCCCC-CHHHHHHHHH
T ss_conf             77545336448999999----86---6678782572398989999989999999998703120659999-8799999999


Q ss_pred             HHHHHHCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf             98642101--333322332334543333222222233223-222233332322222222222222222222232221033
Q gi|254780602|r   79 EKFRRDND--LHYTSDQIIVGTGAKHVIFNALMATVNMGD-EVLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNFQVSPE  155 (400)
Q Consensus        79 ~~~~~~~g--~~~~~e~I~it~G~~~~l~~~~~~~~~~Gd-~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~~~~~~~d~~  155 (400)
                      +|++...+  +++++|||++|+|+.++|..++.+++.+|+ +|+++.|+|+.|...++..|++++.+++++++ |.+|++
T Consensus        74 ~~~~~~~~~~~~v~~e~I~vgnGs~eli~~l~~a~~~~~~~~vl~~~Ptf~~Y~~~a~~~g~~~~~v~~~~~~-f~~d~~  152 (369)
T PRK02610         74 EYVNESTAGSWQITPANISVGNGSDELIRSLLIATCLGGEGSILVAEPTFSMYGILAQTLGIPVVRVGRDPEN-FEIDLA  152 (369)
T ss_pred             HHHCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHCCCEEEEECCCCCC-CCCCHH
T ss_conf             8857554555689815699848999999999999954899859967876558999999759627994576436-656989


Q ss_pred             HHHCCCC----CCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf             3100012----212201211354210000123333211122333332011101221100000122332221112333225
Q gi|254780602|r  156 KLEQAIT----PKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERT  231 (400)
Q Consensus       156 ~l~~~i~----~~~k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~  231 (400)
                      .+++++.    +++|+++|||||||||++++.++++++.+.+   .+++||+||+|.+|.  +...   .....+ ++|+
T Consensus       153 ~~~~~i~~~~~~~~klv~l~nPNNPTG~~~~~~~l~~l~~~~---~~~~vvvDEaY~ef~--~~s~---~~~~~~-~~Nl  223 (369)
T PRK02610        153 AAQTAIEQTQNPPVRVVFVVHPNSPTGNPLTAAELEWLRSLP---EDILVVIDEAYFEFS--QTTL---VPELAQ-HPNW  223 (369)
T ss_pred             HHHHHHHHCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHCC---CCEEEEECCCEEECC--CCCC---CHHHHC-CCCE
T ss_conf             999999855598823999789969726567999999998469---976998336760215--5532---102431-7875


Q ss_pred             EEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHC
Q ss_conf             74146544322344544422110122687531001222332222222222223467643222222110000000245530
Q gi|254780602|r  232 LVVNGVSKAYAMTGLRIGYAAGALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQG  311 (400)
Q Consensus       232 i~~~S~SK~~~~~G~RiG~~v~~~~li~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~~~~~L~~  311 (400)
                      |+++||||.|+++|||+||+++++++++.+.+++.  ..+++++.|.++..+|++ .+++.+.++.+.+.|+.+.+.|++
T Consensus       224 ivlrTfSK~~glaGlRlGy~ia~~~~i~~l~~~~~--p~~v~~~a~~aa~~aL~~-~~~~~~~~~~~~~eR~~l~~~L~~  300 (369)
T PRK02610        224 VILRTFSKAFRLAAHRVGYAIGHPELIAVLEKVRL--PYNLPSFSQAAAQLALEH-RDELLAAIPEILQERDKLYRALQE  300 (369)
T ss_pred             EEEECCCHHHCCCCCCCEECCCCHHHHHHHHHHCC--CCCCCHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             89852634406766551311179999999998249--988489999999999769-499999999999999999999986


Q ss_pred             CCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCCCCEEEEEEECCHHHHHHHHHH
Q ss_conf             47760330274089986264102332113322489899999999873979983502289972899962999999999999
Q gi|254780602|r  312 VPGIRYMIPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGHGPSIRISYAVSDAILEEACVR  391 (400)
Q Consensus       312 ~~g~~~~~p~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~iRis~~~~~e~l~~al~r  391 (400)
                      ++|+++. |..+.|+|++++.           ..+..++.+.| .++||+|...     .+++|||+++++| .+..++.
T Consensus       301 l~g~~v~-ps~aNFil~~~~~-----------~~~~~~~~~~L-~~~Gi~VR~~-----~~~lRIsvgt~ee-n~~~l~~  361 (369)
T PRK02610        301 LPQLRVW-PSAANFLFLRLQG-----------AQDLAALHQAL-KNQGTLVRHT-----AGGLRITIGTPEE-NQRTLAR  361 (369)
T ss_pred             CCCCEEC-CCCCEEEEEECCC-----------CCCHHHHHHHH-HCCCEEECCC-----CCEEEEEECCHHH-HHHHHHH
T ss_conf             7997789-9986089998899-----------75699999999-8299099989-----9908999499999-9999999


Q ss_pred             HHHHHHHC
Q ss_conf             99999860
Q gi|254780602|r  392 IKRFCHSL  399 (400)
Q Consensus       392 l~~~l~~l  399 (400)
                      |+++|++|
T Consensus       362 Lk~~L~~~  369 (369)
T PRK02610        362 LQAALTQL  369 (369)
T ss_pred             HHHHHHHC
T ss_conf             99999619


No 80 
>PRK03317 histidinol-phosphate aminotransferase; Provisional
Probab=100.00  E-value=0  Score=404.75  Aligned_cols=335  Identities=20%  Similarity=0.271  Sum_probs=281.0

Q ss_pred             CCEEECCCCCCCCCCCHHHHHHHHHHHHC---CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             97266565897498899999999999838---875699877898999999998642101333322332334543333222
Q gi|254780602|r   31 IDVLCLTAGEPDFDMPENVKYAVVRAMER---GETKYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFNA  107 (400)
Q Consensus        31 ~~ii~l~~G~p~~~~p~~i~~a~~~al~~---~~~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l~~~  107 (400)
                      ...|.|+..|..|++||.+++++.+++..   +.+.||+..+ .+||++||+|++...|..+++|||++|+|+.++|.++
T Consensus        26 ~~~IkL~~NENP~gpsp~~~~ai~~a~~~~~~~~nrYPd~~~-~~Lr~alA~~l~~~~~~gv~~e~Ii~gnGSdE~i~~i  104 (369)
T PRK03317         26 DVPVRLNTNENPYPPSPALVDDIARAVREAAAGLNRYPDRDA-VALRTDLAAYLTAQTGVGLGVENVWAANGSNEILQQL  104 (369)
T ss_pred             CCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCH-HHHHHHHHHHHHHCCCCCCCHHHEEECCCHHHHHHHH
T ss_conf             998660078899999999999999999976652472899748-9999999987503026797877878826899999999


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCC-CCCCEEECCCCCCCCCCCCCCCC
Q ss_conf             22223322322223333232222222222222222222223222103331000122-12201211354210000123333
Q gi|254780602|r  108 LMATVNMGDEVLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQAITP-KTKWLFLNSPSNPSGVVYSQNRL  186 (400)
Q Consensus       108 ~~~~~~~Gd~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~-~~k~i~l~nP~NPTG~v~s~~~l  186 (400)
                      ++++++|||+|++++|+|..|...++..|++++.++.+  .+|.+|+|++.+++++ ++|+|+|||||||||++++.+++
T Consensus       105 ~~af~~pGd~vl~~~Ptf~~Y~~~a~~~g~~~v~v~~~--~df~~d~d~l~~ai~~~~~klv~l~nPNNPTG~~~~~~~l  182 (369)
T PRK03317        105 LQAFGGPGRSALGFVPSYSMHPIIARGTHTEWVAAPRA--ADFGLDVDAAVAAIREHRPDVVFLTSPNNPTGTALPLDDV  182 (369)
T ss_pred             HHHHCCCCCEEEECCCCHHHHHHHHHHCCCEEEEECCC--CCCCCCHHHHHHHHHCCCCCEEEECCCCCCCCEECCHHHH
T ss_conf             99982899989974786027999998709779993678--7888399999998632698589975899987712378999


Q ss_pred             CCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf             21112233333201110122110000012233222111233322574146544322344544422110122687531001
Q gi|254780602|r  187 RALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTGLRIGYAAGALSLIKSMIVLQG  266 (400)
Q Consensus       187 ~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~v~~~~li~~l~~~~~  266 (400)
                      +++++.+ ++ ++ ||.||+|.+|..++.  .+...+..+ ++|+|+++||||.||++|+|+||+++++++++.+.+++.
T Consensus       183 ~~i~~~~-~~-~~-vvvDEAY~ef~~~~~--~s~~~l~~~-~~nlivlRTfSK~~gLAGlRlGy~ia~~~~i~~l~~~~~  256 (369)
T PRK03317        183 EALLDAA-PP-GI-VVVDEAYAEFSRQGT--PSALTLLPG-YPRLVVSRTMSKAFAFAGGRLGYLAAAPAVIDALRLVRL  256 (369)
T ss_pred             HHHHHHC-CC-CE-EEECCCHHHHHCCCC--CCHHHHHHC-CCCEEEEECCHHHHCCCCHHHEEEECCHHHHHHHHHHCC
T ss_conf             9999858-87-77-994387798615688--766788613-797899941058644665331410069999999998448


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCC
Q ss_conf             22233222222222222346764322222211000000024553047760330274089986264102332113322489
Q gi|254780602|r  267 QQTSGACSIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQGVPGIRYMIPDGAFYLYPSCQDLIGKKSPSGDVIRT  346 (400)
Q Consensus       267 ~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~~~~~L~~~~g~~~~~p~g~~y~~~~~~~~~~~~~~~~~~~~~  346 (400)
                        .++++.++|.++..+|++ .+++.+.++.+.+.|+.+.+.|+++ |+++.++++.|+++-.              ..+
T Consensus       257 --p~~vn~~a~~aa~aaL~d-~~~~~~~~~~i~~~R~~l~~~L~~l-g~~v~pS~aNFil~~~--------------~~~  318 (369)
T PRK03317        257 --PYHLSAVTQAAARAALRH-ADETLASVAALRAERDRVVAWLREL-GFRVAPSDANFVLFGR--------------FAD  318 (369)
T ss_pred             --CCCCCHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHC-CCEECCCCCCEEEEEC--------------CCC
T ss_conf             --988679999999999749-9999999999999999999999978-3978889887799963--------------799


Q ss_pred             HHHHHHHHHHHCCEEEECCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHH
Q ss_conf             899999999873979983502289972899962999999999999999998
Q gi|254780602|r  347 DLDFVNGLLEIEKVAVVQGSSFGHGPSIRISYAVSDAILEEACVRIKRFCH  397 (400)
Q Consensus       347 ~~~~~~~Ll~~~gV~v~pG~~Fg~~~~iRis~~~~~e~l~~al~rl~~~l~  397 (400)
                      ..++.+.|+ ++||+|..   ||.++|+||++++++| .+.-++.|++.|.
T Consensus       319 ~~~~~~~L~-~~gIlVR~---~g~~~~lRisigt~ee-n~~~l~al~~il~  364 (369)
T PRK03317        319 AHAVWQRLL-DRGVLIRD---VGIPGWLRVTIGTPEE-NDAFLDALAEVLA  364 (369)
T ss_pred             HHHHHHHHH-HCCCEECC---CCCCCCEEEECCCHHH-HHHHHHHHHHHHH
T ss_conf             999999999-68968922---8998937996199999-9999999999972


No 81 
>PRK01533 histidinol-phosphate aminotransferase; Validated
Probab=100.00  E-value=0  Score=398.27  Aligned_cols=355  Identities=18%  Similarity=0.258  Sum_probs=285.8

Q ss_pred             HHHHHHHHHCCCCHHHHHHHH-HHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             367889873897589999999-9999986997266565897498899999999999838875699877898999999998
Q gi|254780602|r    2 VFISNILRRVQPSATLVAAQR-VRDLRSKGIDVLCLTAGEPDFDMPENVKYAVVRAMERGETKYTAVAGISPLREAIVEK   80 (400)
Q Consensus         2 ~~~s~~~~~l~~s~~~~~~~~-~~~~~~~g~~ii~l~~G~p~~~~p~~i~~a~~~al~~~~~~Y~~~~G~~~lR~aia~~   80 (400)
                      |.+.+.++.++|+..-.-.+. .+++  ...++|+|+.+++.|++|+.+++++.+++.+ .+.||+. +..+||++||++
T Consensus         1 ~~~r~~i~~l~pY~~g~~~~~~~~~~--g~~~~ikLssNENP~g~s~~v~~al~~~~~~-~~~YPd~-~~~~Lr~~iA~~   76 (366)
T PRK01533          1 MQVKDQLSSLQPYKPGKSPEQMKEVY--GDHSFVKLASNENPFGCSPRVLDELQKSWLD-HALYPDG-GATTLRQTIANK   76 (366)
T ss_pred             CCCCHHHHCCCCCCCCCCHHHHHHHH--CCCCEEEEECCCCCCCCCHHHHHHHHHHHHH-CCCCCCC-CHHHHHHHHHHH
T ss_conf             98485750899999999989999861--8887699508999999999999999987874-5579697-789999999998


Q ss_pred             HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCC
Q ss_conf             64210133332233233454333322222223322322223333232222222222222222222223222103331000
Q gi|254780602|r   81 FRRDNDLHYTSDQIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQA  160 (400)
Q Consensus        81 ~~~~~g~~~~~e~I~it~G~~~~l~~~~~~~~~~Gd~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~  160 (400)
                      +      ++++|||++|+|+.++|.+++++++++||+|+++.|+|+.|...+...|++++.+|++..   ..|++++.++
T Consensus        77 ~------gv~~e~I~vgnGs~E~i~~~~~a~~~~gd~vl~~~Ptf~~Y~~~a~~~g~~~~~v~l~~~---~~d~~~i~~~  147 (366)
T PRK01533         77 L------HVKMEQVLCGSGLDEVIQIISRAVLKAGDNIVTAGATFPQYRHHAIIEGCEVKEVALNNG---VYDLDEISSV  147 (366)
T ss_pred             H------CCCHHHEEECCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHCCCEEEEEECCCC---CCCHHHHHHH
T ss_conf             6------828212998178999999999999479982365898864579999980864899836778---6699999975


Q ss_pred             CCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCC
Q ss_conf             12212201211354210000123333211122333332011101221100000122332221112333225741465443
Q gi|254780602|r  161 ITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKA  240 (400)
Q Consensus       161 i~~~~k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~  240 (400)
                      +++++|+++|||||||||++++.++++++++.|. + +.++|.||+|.+|+.++. .++...+.. .++|+|+++||||.
T Consensus       148 ~~~~~klv~l~nPNNPTG~~~~~~~l~~ll~~~~-~-~~~vviDEAY~ef~~~~~-~~~~~~l~~-~~~NliVlrTfSK~  223 (366)
T PRK01533        148 VDNDTKIVWICNPNNPTGTYVNDRKLTQFIEGIS-E-NTLIVIDEAYYEYVTAKD-FPETLPLLE-KHKNILVLRTFSKA  223 (366)
T ss_pred             CCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHCC-C-CEEEEECHHHHHHHCCCC-CCHHHHHHH-CCCCEEEEECCCHH
T ss_conf             0659878997799999767467065899986278-7-737861287897642578-710577876-18984899727432


Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEC
Q ss_conf             22344544422110122687531001222332222222222223467643222222110000000245530477603302
Q gi|254780602|r  241 YAMTGLRIGYAAGALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQGVPGIRYMIP  320 (400)
Q Consensus       241 ~~~~G~RiG~~v~~~~li~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~~~~~L~~~~g~~~~~p  320 (400)
                      ||++|||+||+++++++++.+.+++.  .+++++++|.++..+|. .++|+++.++...++++.+.+.++. .|+++.++
T Consensus       224 ~glaGlRiGy~ia~~~ii~~l~~~~~--p~~vn~la~~aa~aaL~-d~~~~~~~~~~~~e~~~~~~~~l~~-~g~~v~pS  299 (366)
T PRK01533        224 YGLASFRVGYAVGHEELIEKLNVVRL--PFNVSSLAQKAATIAFG-DDEFIEEIVRVNTEGLRQYESFCKE-NEIPFYQS  299 (366)
T ss_pred             CCCCCHHHHHHHCCHHHHHHHHHHCC--CCCCCHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHHHHHHHH-CCCEECCC
T ss_conf             36830345366289999999998558--98843999999999967-9999999999999999999999987-86858999


Q ss_pred             CCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHC
Q ss_conf             7408998626410233211332248989999999987397998350228997289996299999999999999999860
Q gi|254780602|r  321 DGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGHGPSIRISYAVSDAILEEACVRIKRFCHSL  399 (400)
Q Consensus       321 ~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~iRis~~~~~e~l~~al~rl~~~l~~l  399 (400)
                      ++.| +++++.              ++.++.+.| .+.||+|.+.     ++|+||+.++++ +-+.-++.|++++++-
T Consensus       300 ~aNF-ilv~~~--------------~~~~l~~~L-~~~GIlVR~~-----~~~iRIsvgt~e-eN~~ll~aLke~~e~~  356 (366)
T PRK01533        300 QTNF-IFLPVE--------------NGGEIYEAC-AHAGFIIRPF-----PNGVRITVGTRE-QNEGVISVLQQHFENK  356 (366)
T ss_pred             CCCE-EEEECC--------------CHHHHHHHH-HHCCEEEEEC-----CCCEEEECCCHH-HHHHHHHHHHHHHHHC
T ss_conf             7877-998669--------------999999999-9689899899-----598788279999-9999999999999855


No 82 
>PRK07908 hypothetical protein; Provisional
Probab=100.00  E-value=0  Score=396.77  Aligned_cols=323  Identities=17%  Similarity=0.246  Sum_probs=252.1

Q ss_pred             CCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             69972665658974988999999999998388756998778989999999986421013333223323345433332222
Q gi|254780602|r   29 KGIDVLCLTAGEPDFDMPENVKYAVVRAMERGETKYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFNAL  108 (400)
Q Consensus        29 ~g~~ii~l~~G~p~~~~p~~i~~a~~~al~~~~~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l~~~~  108 (400)
                      ++.+||+||+|+|+++||+.+++++.+++++ .++|++..|..+||++||+++    |  +++|+|++|+|++++|.++.
T Consensus        19 ~~pgiidlS~n~np~gpp~~v~~al~~a~~~-~~~YP~~~~~~~Lr~aiA~~~----g--v~~d~I~~gnGs~E~i~~l~   91 (346)
T PRK07908         19 AAPGLLDFAVNVRADRPPEWLRERLAARLPD-LARYPSTEDVRRARAAVAARH----G--RTRDEVLLLAGAAEGFALLA   91 (346)
T ss_pred             CCCCCEECCCCCCCCCCCHHHHHHHHHHCCC-CCCCCCCCCHHHHHHHHHHHH----C--CCHHHEEEECCHHHHHHHHH
T ss_conf             8999778889999989799999999975554-668939865699999999997----8--58899987437999999999


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCC
Q ss_conf             22233223222233332322222222222222222222232221033310001221220121135421000012333321
Q gi|254780602|r  109 MATVNMGDEVLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRA  188 (400)
Q Consensus       109 ~~~~~~Gd~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~k~i~l~nP~NPTG~v~s~~~l~~  188 (400)
                      .  +.+|+.|++ .|+|..|...++..|+.+..++++++  |.+|.++    +.+++|+|++||||||||++++++++.+
T Consensus        92 ~--~~~~~~vi~-~P~f~~y~~~~~~~g~~v~~v~l~~~--~~ld~~a----i~~~~~lv~l~nPnNPTG~~~~~e~l~~  162 (346)
T PRK07908         92 R--LLPRRAAVV-HPSFTEPEAALRAAGIPVHRVVLDPP--FRLDPAA----VPDDADLVVVGNPTNPTSVLHPAEQLLA  162 (346)
T ss_pred             H--HCCCCEEEE-CCCCHHHHHHHHHCCCCEEEEECCCC--CCCCHHH----CCCCCCEEEECCCCCCCCCCCCHHHHHH
T ss_conf             9--748996997-88857999999986992599507986--6689657----6767898997999798778678999999


Q ss_pred             CCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCC
Q ss_conf             11223333320111012211000001223322211123332257414654432234454442211012268753100122
Q gi|254780602|r  189 LADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTGLRIGYAAGALSLIKSMIVLQGQQ  268 (400)
Q Consensus       189 i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~v~~~~li~~l~~~~~~~  268 (400)
                      ++    +. +.++|.||+|.+|+.+.  ..++..   ...+++|+++||||+|++||||+||+++++++++++.+++...
T Consensus       163 l~----~~-~~~lVvDEaY~df~~~~--~~s~~~---~~~~nvivlrSfSK~yglaGlRiGy~va~~~~i~~l~~~~~~~  232 (346)
T PRK07908        163 LR----RP-GRILVVDEAFADAVPGE--PESLAG---DALPDLLVLRSLTKTWSLAGLRVGYALGAPELLARLTAQRAHW  232 (346)
T ss_pred             HH----CC-CCEEEEEHHHHHCCCCC--CHHHHH---HCCCCEEEEECHHHHHCCCHHHHEEEECCHHHHHHHHHHCCCC
T ss_conf             85----34-98999951154325897--134444---2489889992435762577255132116999999999827788


Q ss_pred             CCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCHHHHHHCCCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCC
Q ss_conf             23322222222222234676--4322222211000000024553047760330274089986264102332113322489
Q gi|254780602|r  269 TSGACSIAQWAAVEALNGPQ--DFVVNNRKIFEYRRDLCVAQLQGVPGIRYMIPDGAFYLYPSCQDLIGKKSPSGDVIRT  346 (400)
Q Consensus       269 ~~~~~~~~q~a~~~~l~~~~--~~~~~~~~~~~~~r~~~~~~L~~~~g~~~~~p~g~~y~~~~~~~~~~~~~~~~~~~~~  346 (400)
                        +++++.+.++.+.+. .+  .+.....+.+.++|+.+.+.|+++ |+.+..|.+++|+|+++++              
T Consensus       233 --~v~~~a~~a~~a~~~-~~~~~~~~~~~~~~~~~R~~l~~~L~~~-g~~~~~ps~anF~l~~~~~--------------  294 (346)
T PRK07908        233 --PLGTLQLEAIAACCA-PRAVAEAAADAERLAALRAEMVAGLRAV-GAEVVDPGAAPFVLVRVPD--------------  294 (346)
T ss_pred             --CCCHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHC-CCEECCCCCEEEEEEECCC--------------
T ss_conf             --887999999999958-7568999999999999999999999977-8865389950899986899--------------


Q ss_pred             HHHHHHHHHHHCCEEEECCCCCC-C-CCEEEEEEECCHHHHHHHHHHHHHHHH
Q ss_conf             89999999987397998350228-9-972899962999999999999999998
Q gi|254780602|r  347 DLDFVNGLLEIEKVAVVQGSSFG-H-GPSIRISYAVSDAILEEACVRIKRFCH  397 (400)
Q Consensus       347 ~~~~~~~Ll~~~gV~v~pG~~Fg-~-~~~iRis~~~~~e~l~~al~rl~~~l~  397 (400)
                       .+++.++|.++||+|+||+.|+ . ++||||++++++ +.+.-++.|++.++
T Consensus       295 -a~~~~~~L~~~gIlVr~~~~f~gl~~~~iRiav~~~e-en~rli~aL~~il~  345 (346)
T PRK07908        295 -AELVRKRLRERGIAVRRGDTFPGLDPDYLRAAVRPEW-PVDRLVQAIAEILR  345 (346)
T ss_pred             -HHHHHHHHHCCCEEEEECCCCCCCCCCEEEEEECCHH-HHHHHHHHHHHHHC
T ss_conf             -9999999980895999788778879898999838899-99999999999974


No 83 
>PRK04870 histidinol-phosphate aminotransferase; Provisional
Probab=100.00  E-value=0  Score=388.22  Aligned_cols=340  Identities=19%  Similarity=0.288  Sum_probs=276.7

Q ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCC-CCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             788987389758999999999999869972665658974988999999999998388-7569987789899999999864
Q gi|254780602|r    4 ISNILRRVQPSATLVAAQRVRDLRSKGIDVLCLTAGEPDFDMPENVKYAVVRAMERG-ETKYTAVAGISPLREAIVEKFR   82 (400)
Q Consensus         4 ~s~~~~~l~~s~~~~~~~~~~~~~~~g~~ii~l~~G~p~~~~p~~i~~a~~~al~~~-~~~Y~~~~G~~~lR~aia~~~~   82 (400)
                      +-+-++.++||..           ....++|.|+..|..+++||.+++++.+++.+. .+.||+.. ..+||++||+|+ 
T Consensus        10 ir~~i~~~~~Y~~-----------~~~~~~ikL~~NEnp~g~~~~v~~ai~~~~~~~~lnrYPd~~-~~~Lr~~lA~~~-   76 (356)
T PRK04870         10 IRPDVLAMSAYHV-----------PDAAGFVKLDAMENPYPLPAELQAELGERLAEVALNRYPDPR-AAALKAALRAAM-   76 (356)
T ss_pred             HHHHHHCCCCCCC-----------CCCCCCEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCC-HHHHHHHHHHHH-
T ss_conf             5488745899899-----------999998883278899998999999999975122437798998-999999999986-


Q ss_pred             HHCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCC
Q ss_conf             2101333322-332334543333222222233223222233332322222222222222222222232221033310001
Q gi|254780602|r   83 RDNDLHYTSD-QIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQAI  161 (400)
Q Consensus        83 ~~~g~~~~~e-~I~it~G~~~~l~~~~~~~~~~Gd~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i  161 (400)
                         |  ++++ ||++|||+.++|.++++++++|||+|+++.|+|..|...++..|++++.+|+++  +|.+|++++.+++
T Consensus        77 ---g--v~~~~~Ii~GnGSdElI~~i~~~~~~pgd~vl~~~Ptf~~Y~~~a~~~g~~~~~vpl~~--d~~~d~~~~~~~i  149 (356)
T PRK04870         77 ---G--VPAGADVLLGNGSDELIQLIALACAKPGAKVLAPVPGFVMYRMSAKFAGLEFVGVPLTA--DFTLDLPAMLAAI  149 (356)
T ss_pred             ---C--CCCCCEEEECCCHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHCCCEEEEEECCC--CCCCCHHHHHHHH
T ss_conf             ---8--79877699816799999999999818989899767776689999998298799984687--6562128899874


Q ss_pred             CC-CCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCC
Q ss_conf             22-12201211354210000123333211122333332011101221100000122332221112333225741465443
Q gi|254780602|r  162 TP-KTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKA  240 (400)
Q Consensus       162 ~~-~~k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~  240 (400)
                      ++ ++|+|++||||||||+++++++++++++.   . +.++|.||+|.+|.-  ...   ...... ++|+|+++|||| 
T Consensus       150 ~~~~~klv~i~nPNNPTG~~~~~~~l~~l~~~---~-~~lvVvDEAY~eF~~--~s~---~~~~~~-~~nlivlRTfSK-  218 (356)
T PRK04870        150 AEHRPALVYLAYPNNPTGNLFDDADVEAIIAA---A-PGLVVIDEAYQPFAG--RSW---LPRAAE-FPNVLVMRTVSK-  218 (356)
T ss_pred             CCCCCCEEEECCCCCCCCCCCCHHHHHHHHHC---C-CCEEEEECCCHHHCC--CCC---CHHHHC-CCCEEEEECCCC-
T ss_conf             14687389976899976633687889999850---6-986552254075567--862---101203-796899860541-


Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEC
Q ss_conf             22344544422110122687531001222332222222222223467643222222110000000245530477603302
Q gi|254780602|r  241 YAMTGLRIGYAAGALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQGVPGIRYMIP  320 (400)
Q Consensus       241 ~~~~G~RiG~~v~~~~li~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~~~~~L~~~~g~~~~~p  320 (400)
                      ||++|+|+||+++++++++.+.+++.  ..+++.++|.++..+|+ .++++++.++...+.|+.+.+.|++++|+++.++
T Consensus       219 ~glaGlRvGy~ia~~~~i~~l~k~~~--p~~vn~~a~~aa~~aL~-d~~~~~~~~~~~~~~R~~l~~~L~~l~g~~v~pS  295 (356)
T PRK04870        219 LGLAGLRLGYLAGHPAWIAELDKVRP--PYNVNVLTQATALFALE-HVDVLDAQAAELRAERTRLAAALAALPGVTVFPS  295 (356)
T ss_pred             CCCCCCCEEEEEECHHHHHHHHHHCC--CCCCHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCC
T ss_conf             01365662777509999999977348--98733999999999974-9588999999999999999999983699788899


Q ss_pred             CCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCC--CCCEEEEEEECCHHHHHHHHHHHHH
Q ss_conf             7408998626410233211332248989999999987397998350228--9972899962999999999999999
Q gi|254780602|r  321 DGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFG--HGPSIRISYAVSDAILEEACVRIKR  394 (400)
Q Consensus       321 ~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg--~~~~iRis~~~~~e~l~~al~rl~~  394 (400)
                      ++ .|+|++++              +..++.+.| .++||+|.+++.|+  .++|+||++++++|+ +.-++.|++
T Consensus       296 ~a-NFil~~~~--------------~a~~l~~~L-~~~gIlVR~~~~~~~~~~~~lRIsigt~een-~~ll~aLk~  354 (356)
T PRK04870        296 AA-NFILVRVP--------------DAAAVFDGL-KTRRVLVKNVSGMHPLLANCLRVTVGSPEEN-AQFLAALKL  354 (356)
T ss_pred             CC-EEEEEECC--------------CHHHHHHHH-HHCCEEEEECCCCCCCCCCEEEEECCCHHHH-HHHHHHHHH
T ss_conf             88-08999889--------------999999999-9699099988988888999899983999999-999999998


No 84 
>PRK08153 histidinol-phosphate aminotransferase; Provisional
Probab=100.00  E-value=0  Score=386.93  Aligned_cols=359  Identities=21%  Similarity=0.257  Sum_probs=284.5

Q ss_pred             HHHHHHHCCCCHHH-HHHHHHHHHHHCCC-CEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             78898738975899-99999999998699-72665658974988999999999998388756998778989999999986
Q gi|254780602|r    4 ISNILRRVQPSATL-VAAQRVRDLRSKGI-DVLCLTAGEPDFDMPENVKYAVVRAMERGETKYTAVAGISPLREAIVEKF   81 (400)
Q Consensus         4 ~s~~~~~l~~s~~~-~~~~~~~~~~~~g~-~ii~l~~G~p~~~~p~~i~~a~~~al~~~~~~Y~~~~G~~~lR~aia~~~   81 (400)
                      +..-++.|+|+.-. ...+.+++   -|. ++|.|+..|..++|+|.+++|+.+++.+ .+.||+.. ..+||++||+++
T Consensus         7 ~~p~i~~l~~y~p~~~~~~~~~~---~g~~~~ikL~sNENP~gpsp~v~~Ai~~~~~~-~~rYPd~~-~~~Lr~~lA~~~   81 (370)
T PRK08153          7 LTPLVESLPSTVPFVGPETQERQ---RGRPFRARIGANESGFGPSPSVIAAMREAAAE-VWKYGDPE-NHDLRHALAAHH   81 (370)
T ss_pred             CCHHHHHCCCCCCCCCHHHHHHH---CCCCCCEEECCCCCCCCCCHHHHHHHHHHHHH-CCCCCCCC-HHHHHHHHHHHH
T ss_conf             98558758898999988999986---49998778689999989899999999976864-56799977-899999999986


Q ss_pred             HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCC
Q ss_conf             42101333322332334543333222222233223222233332322222222222222222222232221033310001
Q gi|254780602|r   82 RRDNDLHYTSDQIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQAI  161 (400)
Q Consensus        82 ~~~~g~~~~~e~I~it~G~~~~l~~~~~~~~~~Gd~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i  161 (400)
                            .+++|||+++||+.++|.++++++++|||+|+++.|+|+.|...+...|++++.+|+..+.   .|++++.+++
T Consensus        82 ------gv~~e~I~~gnGSdeli~~~~~a~~~~g~~vv~~~p~y~~y~~~~~~~g~~~~~vp~~~~~---~d~~~~l~~~  152 (370)
T PRK08153         82 ------GVAPENIMVGEGIDGLLGLIVRLYVEPGDAVVTSLGAYPTFNYHVAGFGGRLVTVPYRDDH---EDLDALLDAA  152 (370)
T ss_pred             ------CCCHHHEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCEEEEEECCCCC---CCHHHHHHHC
T ss_conf             ------8786679980888999999999985599923437887516999999819669999445654---4869999860


Q ss_pred             -CCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCC
Q ss_conf             -2212201211354210000123333211122333332011101221100000122332221112333225741465443
Q gi|254780602|r  162 -TPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKA  240 (400)
Q Consensus       162 -~~~~k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~  240 (400)
                       ++++|+|+|||||||||++++.++++++++.+ .+ +.++|.||+|.+|..++    ++..+... ++|+|+++||||.
T Consensus       153 ~~~~~klv~l~nPNNPTG~~~~~~~l~~l~~~~-~~-~~lvVvDEAY~ef~~~~----~~~~l~~~-~~NliVlRTfSK~  225 (370)
T PRK08153        153 RRENAPLVYLANPDNPMGSWHPAADIVAFIEAL-PE-TTLLVLDEAYCETAPAS----AAPPIDPD-DPNVIRMRTFSKA  225 (370)
T ss_pred             CCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHC-CC-CCEEEEEHHHHHHCCCC----CHHHHHHC-CCCEEEEEECCHH
T ss_conf             378973899768959857767868899999847-77-73896215356435642----17788743-9988999826220


Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEC
Q ss_conf             22344544422110122687531001222332222222222223467643222222110000000245530477603302
Q gi|254780602|r  241 YAMTGLRIGYAAGALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQGVPGIRYMIP  320 (400)
Q Consensus       241 ~~~~G~RiG~~v~~~~li~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~~~~~L~~~~g~~~~~p  320 (400)
                      ||++|+|+||+++++++++.+.+++.  .++++.+.|.++.++|+ +++|+++.++...+.|+.+.+.|+.. |+++.++
T Consensus       226 ygLAGlRlGY~ia~~~li~~l~k~r~--p~~vn~~aq~aa~aaL~-d~~~~~~~~~~i~~~R~~l~~~l~~~-g~~~~pS  301 (370)
T PRK08153        226 YGLAGARVGYAIGTPGTIKAFDKVRN--HFGMNRIAQAAALAALK-DQAYLAEVVAKIAAARDRIAAIARAN-GLTPLPS  301 (370)
T ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHCC--CCCCCHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHHHHHHHHC-CCEECCC
T ss_conf             37888743201389999999998648--98877999999999977-99999999999999999999999868-5847999


Q ss_pred             CCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHCC
Q ss_conf             74089986264102332113322489899999999873979983502289972899962999999999999999998609
Q gi|254780602|r  321 DGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGHGPSIRISYAVSDAILEEACVRIKRFCHSLQ  400 (400)
Q Consensus       321 ~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~iRis~~~~~e~l~~al~rl~~~l~~l~  400 (400)
                      ++.| +++++...          .....++.++|+ ++||+|.....++.++|+|||+++++| .+.-++.|++.|+.-|
T Consensus       302 ~aNF-il~~~~~~----------~~~a~~l~~~L~-~~GIlVR~~~~~~l~~~lRIsiGt~ee-n~~~l~aL~eiLk~~~  368 (370)
T PRK08153        302 ATNF-VAIDCGRD----------GAFARAVLDGLI-ARDIFVRMPGVAPLDRCIRVSVGPEEE-LDLFAEALPEALKAAR  368 (370)
T ss_pred             CCCE-EEEECCCC----------HHHHHHHHHHHH-HCCEEECCCCCCCCCCEEEEECCCHHH-HHHHHHHHHHHHHHHH
T ss_conf             7877-99984897----------469999999999-789199449988899989997399999-9999999999999863


No 85 
>PRK08056 threonine-phosphate decarboxylase; Provisional
Probab=100.00  E-value=0  Score=388.41  Aligned_cols=345  Identities=20%  Similarity=0.303  Sum_probs=277.0

Q ss_pred             HHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf             99999999986997266565897498899999999999838875699877898999999998642101333322332334
Q gi|254780602|r   19 AAQRVRDLRSKGIDVLCLTAGEPDFDMPENVKYAVVRAMERGETKYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGT   98 (400)
Q Consensus        19 ~~~~~~~~~~~g~~ii~l~~G~p~~~~p~~i~~a~~~al~~~~~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~e~I~it~   98 (400)
                      +.+.++++--.-.+||+|+..+..|++|+.+++++.+++.. ...||+.. ..+||++||+++      .+++|||++++
T Consensus         8 i~~~~~~~G~~~~~iidlssNeNP~g~p~~v~~ai~~~~~~-~~rYPd~~-~~~Lr~~iA~~~------gv~~~~I~vgn   79 (356)
T PRK08056          8 IREAATVLGISPDQLLDFSANINPLGMPVSVKRALIDNLDC-IERYPDAD-YFHLHQALARHH------QVPASWILAGN   79 (356)
T ss_pred             HHHHHHHHCCCHHHEEEECCCCCCCCCCHHHHHHHHHHHHH-HHCCCCCC-HHHHHHHHHHHH------CCCHHHEEECC
T ss_conf             99999994959766777379999989999999999974757-74199824-899999999982------98889988758


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEECCCCCCCC
Q ss_conf             54333322222223322322223333232222222222222222222223222103331000122122012113542100
Q gi|254780602|r   99 GAKHVIFNALMATVNMGDEVLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSG  178 (400)
Q Consensus        99 G~~~~l~~~~~~~~~~Gd~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~k~i~l~nP~NPTG  178 (400)
                      |+++.|++++..+ .++ .+++..|+|..|...++..|++++.+++.++++|.++ +.+.+++++++|+|++||||||||
T Consensus        80 Gs~Eli~~i~~~~-~~~-~~~i~~Ptf~~Y~~~a~~~g~~v~~~~l~~~~~~~~~-~~~~~~~~~~~~lv~i~nPNNPTG  156 (356)
T PRK08056         80 GETESIFTVASGL-KPR-RAMIVTPGFAEYGRALAQVGCEIRRWSLREADGWQLT-DAILEALTPDLDCLFLCTPNNPTG  156 (356)
T ss_pred             CHHHHHHHHHHHC-CCC-CEEEECCCHHHHHHHHHHCCCEEEEEECCHHHCCCCC-HHHHHHCCCCCCEEEECCCCCCCC
T ss_conf             7899999999854-899-6699788749999999985976999867733158976-999973367888899818999988


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCH-HHH
Q ss_conf             0012333321112233333201110122110000012233222111233322574146544322344544422110-122
Q gi|254780602|r  179 VVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTGLRIGYAAGA-LSL  257 (400)
Q Consensus       179 ~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~v~~-~~l  257 (400)
                      .++++++++++++.| +.+++++|.||+|.+|+.++..   +..+..+ ++|+++++||||.|+++|+|+||++++ +..
T Consensus       157 ~~~~~~~l~~l~~~~-~~~~~~vvvDEAY~ef~~~~~s---~~~~~~~-~~nlivlrTfSK~~glaGlRiGy~i~~~~~~  231 (356)
T PRK08056        157 LLPERQLLQAIADRC-KSLNINLILDEAFIDFIPHETG---FIPALKD-NPHIWVLRSLTKFYAIPGLRLGYLVNSDDAA  231 (356)
T ss_pred             CCCCHHHHHHHHHHH-HCCCEEEEEEHHHHHHCCCCCC---HHHHHHC-CCCEEEEEECCHHCCCCCCCHHHHHCCCHHH
T ss_conf             758999999999872-4049399974455764358613---5799845-9978998414164068520001110588999


Q ss_pred             HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEECCCCEEEEEECCCCCCCC
Q ss_conf             68753100122233222222222222346764322222211000000024553047760330274089986264102332
Q gi|254780602|r  258 IKSMIVLQGQQTSGACSIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQGVPGIRYMIPDGAFYLYPSCQDLIGKK  337 (400)
Q Consensus       258 i~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~~~~~L~~~~g~~~~~p~g~~y~~~~~~~~~~~~  337 (400)
                      ++.+.+.+.  ..+++++.|.++..+|+ +++|+++.++..++.|+.+.+.|++++|+++.+++ +.|+|+++.      
T Consensus       232 i~~l~~~~~--p~~vn~~a~~aa~~al~-d~~~~~~~~~~i~~~r~~l~~~L~~l~g~~v~ps~-aNFil~~~~------  301 (356)
T PRK08056        232 VARMRRQQM--PWSINALAALAGEVALQ-DSAWQQATWHWLREEGARFYQALCQLPLLTVYPGR-ANYLLLRCE------  301 (356)
T ss_pred             HHHHHHHCC--CCCCCHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCC-CCEEEEECC------
T ss_conf             999996158--99811999999999836-99999999999999999999998658997889898-878999889------


Q ss_pred             CCCCCCCCCHHHHHHHHHHHCCEEEECCCCC-CC-CCEEEEEEECCHHHHHHHHHHHHHHHHH
Q ss_conf             1133224898999999998739799835022-89-9728999629999999999999999986
Q gi|254780602|r  338 SPSGDVIRTDLDFVNGLLEIEKVAVVQGSSF-GH-GPSIRISYAVSDAILEEACVRIKRFCHS  398 (400)
Q Consensus       338 ~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~F-g~-~~~iRis~~~~~e~l~~al~rl~~~l~~  398 (400)
                             .++.++.+.|+ ++||+|.+++.| |. ++|+||++++++|+ +.-++.|++.|..
T Consensus       302 -------~~~~~~~~~L~-~~gIlVR~~~~f~gl~~~~lRisigt~~en-~~ll~aL~~iL~g  355 (356)
T PRK08056        302 -------REDIDLQRRLL-TQRILIRSCANYPGLDSRYYRVAIRSAAQN-ERLLAALRNVLTG  355 (356)
T ss_pred             -------CCHHHHHHHHH-HCCEEEEECCCCCCCCCCEEEEECCCHHHH-HHHHHHHHHHHCC
T ss_conf             -------99999999999-689099767888999999899975999999-9999999999737


No 86 
>PRK08637 hypothetical protein; Provisional
Probab=100.00  E-value=0  Score=384.97  Aligned_cols=349  Identities=19%  Similarity=0.255  Sum_probs=258.6

Q ss_pred             EECCCCC---CCCCCCHHHHHHHHHHHHC-CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCC---CCCCCCCCCCCC
Q ss_conf             6656589---7498899999999999838-87569987789899999999864210133332233---233454333322
Q gi|254780602|r   34 LCLTAGE---PDFDMPENVKYAVVRAMER-GETKYTAVAGISPLREAIVEKFRRDNDLHYTSDQI---IVGTGAKHVIFN  106 (400)
Q Consensus        34 i~l~~G~---p~~~~p~~i~~a~~~al~~-~~~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~e~I---~it~G~~~~l~~  106 (400)
                      ||+++|-   -+-+..-.++++..+.+.. ....|.|..|+|++|+++++.+... +..+.++.+   ++|+|+++||.+
T Consensus         6 iN~tiG~~~d~~~~~~l~~v~~~~~~l~~~~~~~Y~Pi~G~p~~~~~~~~~~~~~-~~~~~~~~~~~~v~T~Ggt~al~~   84 (386)
T PRK08637          6 YNATIGMATEKGGKMFASSLDAMFNDLTPDEIFPYAPPQGIEELRDLWQQKMLRD-NPSLSGKNMSLPIVTNALTHGLSL   84 (386)
T ss_pred             EEEEEEEEECCCCCEEHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCC-CCHHHHCCEEEEEECCCHHHHHHH
T ss_conf             5503899987999882899999997368410258689767299999999998367-921111264666875746899999


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCHHHHHHCCCC---C-CCCCEEECCCCCCCCCCC
Q ss_conf             2222233223222233332322222222-2222222222222322210333100012---2-122012113542100001
Q gi|254780602|r  107 ALMATVNMGDEVLIPRPYWVSYPDMVAL-CGGIPVFVDTQQDDNFQVSPEKLEQAIT---P-KTKWLFLNSPSNPSGVVY  181 (400)
Q Consensus       107 ~~~~~~~~Gd~Vlv~~P~y~~y~~~~~~-~g~~~~~v~~~~~~~~~~d~~~l~~~i~---~-~~k~i~l~nP~NPTG~v~  181 (400)
                      ++..+++|||+|++++|+|++|..++.. .|.++..+|+..+++ .+|++.+.+.+.   + +..++++++||||||.++
T Consensus        85 ~~~~~~~~gd~Vlip~P~W~ny~~i~~~~~G~~v~~y~~~~~~~-~~~~~~~~~~l~~~~~~~~vvll~n~phNPTG~~~  163 (386)
T PRK08637         85 VADLFVNQGDTVLLPDHNWGNYKLVFNTRNGANLQTYPIFDKDG-HFTTDALVEALQAAYNKDKVILILNFPNNPTGYTP  163 (386)
T ss_pred             HHHHHHCCCCEEEEECCCCHHHHHHHHHHCCCCEEEEEEECCCC-CCCHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCC
T ss_conf             99998479998999179854179999983798416774264678-97819999999845778838999878999888689


Q ss_pred             CCCCCCCCCCCCCCC----CCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCE--EEEECCCCCCCCCCCCCCCCCCC--
Q ss_conf             233332111223333----3201110122110000012233222111233322--57414654432234454442211--
Q gi|254780602|r  182 SQNRLRALADVLVRN----PHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYER--TLVVNGVSKAYAMTGLRIGYAAG--  253 (400)
Q Consensus       182 s~~~l~~i~~~~a~~----~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~--~i~~~S~SK~~~~~G~RiG~~v~--  253 (400)
                      +.+++++|++++.++    .++++|+|++|.+|.|++....++....+++.++  +++++|+||+|+|+|||+||++.  
T Consensus       164 t~ee~~~i~~~~~~~~~~g~~i~~i~D~aY~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~myG~RvG~l~~~~  243 (386)
T PRK08637        164 THKEVTTIVEAIKALADKGTKVIAVVDDAYYGLFYEDVYKESLFTALANLHSNILAVKLDGATKEFFAWGFRVGFITFGT  243 (386)
T ss_pred             CHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHCCCCCCCHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCEEEEEEEC
T ss_conf             99999999999998773388889999601456630884322499986215776489996131012557002315788605


Q ss_pred             -HHHHHHHH----HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---CCCCCCCCCCHHHHHHC---CCCCEEEECCC
Q ss_conf             -01226875----310012223322222222222234676432222---22110000000245530---47760330274
Q gi|254780602|r  254 -ALSLIKSM----IVLQGQQTSGACSIAQWAAVEALNGPQDFVVNN---RKIFEYRRDLCVAQLQG---VPGIRYMIPDG  322 (400)
Q Consensus       254 -~~~li~~l----~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~---~~~~~~~r~~~~~~L~~---~~g~~~~~p~g  322 (400)
                       +++..+.+    ......+.+++|++.|.++..+|+.++.+.++.   ++.+++|++.+.+.|.+   -.++.+.+.++
T Consensus       244 ~~~~~~~~~~~~~~~~~r~~~Snpp~~gq~~~~~~L~~~~~~~~e~~e~~~~m~~R~~~~~~~l~~~~~~~~~~~~p~~~  323 (386)
T PRK08637        244 SDQTTKEVLEAKVKGLIRSNISSGPHPSQSAVLHVLKNPDQFDKEIEQKIQILKERYEVTKEVVYDDQYDDHWQAYPFNS  323 (386)
T ss_pred             CCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf             98999999999999998604488568999999999759088999999999999999999999974204356863245676


Q ss_pred             CEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCCCCEEEEEE-ECCHHHHHHHHHHHHHHHHHCC
Q ss_conf             08998626410233211332248989999999987397998350228997289996-2999999999999999998609
Q gi|254780602|r  323 AFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGHGPSIRISY-AVSDAILEEACVRIKRFCHSLQ  400 (400)
Q Consensus       323 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~iRis~-~~~~e~l~~al~rl~~~l~~l~  400 (400)
                      |||.|+++++            .++++++.+|+++++|.++|   +| .+++|||| +.++++++++++||++++++||
T Consensus       324 G~F~~i~~~~------------~~~e~l~~~Lle~~~V~~v~---~g-~~~iRIs~aals~~nI~~~~~~I~~al~~Lk  386 (386)
T PRK08637        324 GYFMCLKLKD------------VDAEELRVHLLEKYGIGVIA---LN-ETDLRIAFSCVEEEDIPHVFDSIAKAIDDLR  386 (386)
T ss_pred             EEEEEECCCC------------CCHHHHHHHHHHCCCEEEEE---CC-CCCEEEEEEECCHHHHHHHHHHHHHHHHHCC
T ss_conf             1588647998------------99999999998639589995---59-9977999985889999999999999998539


No 87 
>PRK09105 putative aminotransferase; Provisional
Probab=100.00  E-value=0  Score=384.09  Aligned_cols=326  Identities=16%  Similarity=0.220  Sum_probs=264.9

Q ss_pred             CCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             97266565897498899999999999838875699877898999999998642101333322332334543333222222
Q gi|254780602|r   31 IDVLCLTAGEPDFDMPENVKYAVVRAMERGETKYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFNALMA  110 (400)
Q Consensus        31 ~~ii~l~~G~p~~~~p~~i~~a~~~al~~~~~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l~~~~~~  110 (400)
                      +.+|.|+..|..++|+|.+++|+.+++.. .+.||+.. ..+||++||+++      .+++|||+++||+.+.|.+++++
T Consensus        46 ~g~ikL~sNENP~Gpsp~v~~Ai~~~~~~-~~rYPd~~-~~~Lr~~lA~~~------gv~~~~I~~gnGSdE~i~~l~~a  117 (374)
T PRK09105         46 EGAVFLNFNENPLGPSAAARAAAARSAAL-SGRYLFEM-QDELRTLFAAQL------GLPVDHLHAYAGSSEPLNYAVLA  117 (374)
T ss_pred             CCCEEEECCCCCCCCCHHHHHHHHHHHHH-CCCCCCCC-HHHHHHHHHHHH------CCCHHHEEEECCHHHHHHHHHHH
T ss_conf             99978458888889899999999976524-57798986-899999999997------85902499936999999999999


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf             23322322223333232222222222222222222223222103331000122122012113542100001233332111
Q gi|254780602|r  111 TVNMGDEVLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALA  190 (400)
Q Consensus       111 ~~~~Gd~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~k~i~l~nP~NPTG~v~s~~~l~~i~  190 (400)
                      +++|||+|++++|+|..|...++..|++++.+|++++  |.+|++.+.+. .+++|+++|||||||||++++.+++++++
T Consensus       118 f~~~g~~vv~~~Ptf~~Y~~~a~~~g~~v~~vpl~~d--~~~dl~~l~~~-~~~tklv~l~nPNNPTG~~~~~~el~~~~  194 (374)
T PRK09105        118 FTSPEAGLVTADPTYEAGWRAADAQGAKVIKVPLRAD--GAHDVRAMLAA-DPNAGLIYICNPNNPTGSVTPRADIEWLL  194 (374)
T ss_pred             HHCCCCEEEECCCCHHHHHHHHHHCCCEEEEEEECCC--CCCCHHHHHHC-CCCCCEEEECCCCCCCCCCCCHHHHHHHH
T ss_conf             8079986895888779999999982977999861655--58586889735-78987899788999987657999999999


Q ss_pred             CCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf             22333332011101221100000122332221112333225741465443223445444221101226875310012223
Q gi|254780602|r  191 DVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTGLRIGYAAGALSLIKSMIVLQGQQTS  270 (400)
Q Consensus       191 ~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~v~~~~li~~l~~~~~~~~~  270 (400)
                      +. ..+ +.+||.||+|.+|.  +.  ++...+... ++|+|+++||||.|+++|+|+||+++++++++.+.++..   .
T Consensus       195 ~~-~~~-~~lvvvDEAY~ef~--~~--~s~~~l~~~-~~NvivlRTfSKaygLAGlRvGY~ia~~~li~~l~~~~~---~  264 (374)
T PRK09105        195 AH-KPA-GSVVLVDEAYIHFS--DA--PSVVDLVAQ-RKDVVVLRTFSKLYGMAGMRLGLAAARPDLLAKLARFGG---N  264 (374)
T ss_pred             HH-CCC-CCEEEEEHHHHHHC--CC--CCCHHHHHC-CCCEEEEEHHHHHHCCCCCCCCHHHCCHHHHHHHHHCCC---C
T ss_conf             71-898-81899862676625--78--643256742-898899822237626651002231089999999973588---9


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCHHHH
Q ss_conf             32222222222223467643222222110000000245530477603302740899862641023321133224898999
Q gi|254780602|r  271 GACSIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQGVPGIRYMIPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDF  350 (400)
Q Consensus       271 ~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~~~~~L~~~~g~~~~~p~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~  350 (400)
                      ..+...|.+++++|+ +++|+++.++...+.|+.+.+.|++. |+++.++++.|++ +++.             .+..++
T Consensus       265 ~~~~~a~aaa~aaL~-d~~~~~~~~~~~~~~R~~l~~~L~~~-g~~~~pS~aNFil-~~~~-------------~~a~~~  328 (374)
T PRK09105        265 PLPVPAAAAGLASLR-DPKLVPQRRAQNAAVREDTIAWLRKQ-GYACTPSQANCFM-VDVK-------------RPAEVF  328 (374)
T ss_pred             CCCHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHC-CCEECCCCCCEEE-EECC-------------CCHHHH
T ss_conf             887999999999962-99999999999999999999999978-3958998785799-9559-------------999999


Q ss_pred             HHHHHHHCCEEEECCCCCC-CCCEEEEEEECCHHHHHHHHHHHHHHHH
Q ss_conf             9999987397998350228-9972899962999999999999999998
Q gi|254780602|r  351 VNGLLEIEKVAVVQGSSFG-HGPSIRISYAVSDAILEEACVRIKRFCH  397 (400)
Q Consensus       351 ~~~Ll~~~gV~v~pG~~Fg-~~~~iRis~~~~~e~l~~al~rl~~~l~  397 (400)
                      .+.| .++||.|.  ..|+ .++|+||++++++| .+.-++.|++.++
T Consensus       329 ~~~L-~~~gIlV~--r~~~~~~~~lRISiGt~ee-n~~fl~AL~evL~  372 (374)
T PRK09105        329 ADAM-AKQGVFIG--RSWPIWPNWVRVTVGTEEE-MAAFRSAFAKVMR  372 (374)
T ss_pred             HHHH-HHCCEEEE--CCCCCCCCEEEEECCCHHH-HHHHHHHHHHHHC
T ss_conf             9999-96997993--7999889979994699999-9999999999866


No 88 
>PRK03967 histidinol-phosphate aminotransferase; Provisional
Probab=100.00  E-value=0  Score=383.18  Aligned_cols=332  Identities=20%  Similarity=0.324  Sum_probs=271.2

Q ss_pred             HHHHHHCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCC-CCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             889873897589999999999998699726656589749889999999999983887-5699877898999999998642
Q gi|254780602|r    5 SNILRRVQPSATLVAAQRVRDLRSKGIDVLCLTAGEPDFDMPENVKYAVVRAMERGE-TKYTAVAGISPLREAIVEKFRR   83 (400)
Q Consensus         5 s~~~~~l~~s~~~~~~~~~~~~~~~g~~ii~l~~G~p~~~~p~~i~~a~~~al~~~~-~~Y~~~~G~~~lR~aia~~~~~   83 (400)
                      -+.++.++|+..           .+|..+|.|+.+++.|+||+.+++++.+++++.. +.||+ .+..+||++||+|+  
T Consensus         3 r~~i~~~~pY~~-----------~~~~~~I~L~~NEnp~gpp~~v~~ai~~~l~~~~~~rYPd-~~~~~Lr~~ia~~~--   68 (337)
T PRK03967          3 REEVKEFKPYRV-----------YEGDYRIWLDKNENPFDLPEELKEEIFEELKRVPFNRYPH-ITADPLREAIAEFL--   68 (337)
T ss_pred             CHHHHCCCCCCC-----------CCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCC-CCHHHHHHHHHHHH--
T ss_conf             836635899778-----------8999817826989999999999999999987158776999-98799999999986--


Q ss_pred             HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCC
Q ss_conf             10133332233233454333322222223322322223333232222222222222222222223222103331000122
Q gi|254780602|r   84 DNDLHYTSDQIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQAITP  163 (400)
Q Consensus        84 ~~g~~~~~e~I~it~G~~~~l~~~~~~~~~~Gd~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~  163 (400)
                          .+++++|++|+|+.++|..+++++  +||+|+++.|+|+.|...++..|++++.+|+++  +|.+|++.+.+. .+
T Consensus        69 ----gv~~~~v~~gnGs~e~i~~~~~~~--~gd~v~i~~P~f~~Y~~~~~~~g~~~~~vpl~~--~f~~d~~~~~~~-~~  139 (337)
T PRK03967         69 ----GLDAENIIVGNGSDELISYLVKLF--NGKYIVISPPTFGMYSFYAKLNGIPVIDVPLKE--DFTIDGDRIVEK-AK  139 (337)
T ss_pred             ----CCCHHEEEECCCHHHHHHHHHHHC--CCCEEEECCCCCHHHHHHHHHCCCEEEEEECCC--CCCCCHHHHHHC-CC
T ss_conf             ----838410998278899999999863--999799868983089999998398599961534--567899999851-77


Q ss_pred             CCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCC
Q ss_conf             12201211354210000123333211122333332011101221100000122332221112333225741465443223
Q gi|254780602|r  164 KTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAM  243 (400)
Q Consensus       164 ~~k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~~  243 (400)
                      ++++|++||||||||++++.+++.++++    . +..||.||+|.+|.  +...   ..+... ++++|+++||||.|++
T Consensus       140 ~~~~v~l~nPnNPTG~~~~~~el~~~~~----~-~~~vvvDEaY~ef~--~~s~---~~l~~~-~~nliv~rSfSK~~gl  208 (337)
T PRK03967        140 DASAVFICSPNNPTGNLQPIEEILKVLD----T-GKPVVVDEAYVEFS--GKSY---IGLLDE-YDNLILLRTFSKAFGL  208 (337)
T ss_pred             CCCEEEEECCCCCCCCCCCHHHHHHHHH----C-CCEEEECCCHHHHC--CCCH---HHHHHH-CCCCEEEECCCHHHCC
T ss_conf             8878999389998762167899998650----0-88788435547645--7525---778874-7762166556655345


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEECCCC
Q ss_conf             44544422110122687531001222332222222222223467643222222110000000245530477603302740
Q gi|254780602|r  244 TGLRIGYAAGALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQGVPGIRYMIPDGA  323 (400)
Q Consensus       244 ~G~RiG~~v~~~~li~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~~~~~L~~~~g~~~~~p~g~  323 (400)
                      +|||+||+++++++++.+.+++.  .++++.++|.++..+|+ .++++++.++.+.+.|+.+.+.|.++ ++    |..+
T Consensus       209 aGlRlGy~ia~~~~i~~l~k~~~--p~~vn~~a~~aa~aal~-~~~~~~~~~~~~~~~r~~l~~~L~~~-~~----ps~a  280 (337)
T PRK03967        209 AGIRVGYAIANEEIIKALYRIKP--PFSLNILSEKIVRLMLD-HYDLIKERIDYIIKERERVYRELGDY-AY----PSDA  280 (337)
T ss_pred             CCCCCEEECCCHHHHHHHHHHCC--CCCCCHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHCC-CC----CCCC
T ss_conf             62002310189999999999538--98775999999999962-99999999999999999999981277-78----9988


Q ss_pred             EEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHC
Q ss_conf             8998626410233211332248989999999987397998350228997289996299999999999999999860
Q gi|254780602|r  324 FYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGHGPSIRISYAVSDAILEEACVRIKRFCHSL  399 (400)
Q Consensus       324 ~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~iRis~~~~~e~l~~al~rl~~~l~~l  399 (400)
                      .|+|++.                  ++.+.| .++||+|.....+ .++|+|||++++ ++.+..++.|++|++..
T Consensus       281 NFvl~~~------------------~~~~~L-~~~gIlVR~~~~~-~~~~iRIsvgt~-een~~ll~aLke~~e~~  335 (337)
T PRK03967        281 NFLLLKL------------------DAYDYL-LENGIVVRKLSGR-LEGHIRVTIGKK-EENDEFIKALKEFKENY  335 (337)
T ss_pred             EEEEEEH------------------HHHHHH-HHCCEEEECCCCC-CCCEEEEECCCH-HHHHHHHHHHHHHHHHH
T ss_conf             1999725------------------899999-8499099489999-999899983999-99999999999999972


No 89 
>KOG0256 consensus
Probab=100.00  E-value=0  Score=374.75  Aligned_cols=328  Identities=23%  Similarity=0.430  Sum_probs=285.0

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCC
Q ss_conf             5699877898999999998642101--33332233233454333322222223322322223333232222222-22222
Q gi|254780602|r   62 TKYTAVAGISPLREAIVEKFRRDND--LHYTSDQIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDMVA-LCGGI  138 (400)
Q Consensus        62 ~~Y~~~~G~~~lR~aia~~~~~~~g--~~~~~e~I~it~G~~~~l~~~~~~~~~~Gd~Vlv~~P~y~~y~~~~~-~~g~~  138 (400)
                      ..|.+..|++++|+|+|+++.+..|  +.++|+++++++|++.+...+..++++|||.-++|+|+|+.+..-++ ..|.+
T Consensus       115 a~fqdy~Gl~~frqa~A~Fm~~~r~~~v~fdP~r~Vv~~G~T~ane~l~fcLadpgdafLvPtPyY~gfdrdl~~rTgve  194 (471)
T KOG0256         115 AMFQDYHGLPSFRQAVAEFMERARGNRVKFDPERVVVTNGATSANETLMFCLADPGDAFLVPTPYYPGFDRDLRWRTGVE  194 (471)
T ss_pred             HHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCEEECCCE
T ss_conf             63345347568999999999998489874376566885575316677787625898510356899876322014203836


Q ss_pred             CCCCCCCCCCCCCCHHHHHHCCCCC------CCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC
Q ss_conf             2222222223222103331000122------1220121135421000012333321112233333201110122110000
Q gi|254780602|r  139 PVFVDTQQDDNFQVSPEKLEQAITP------KTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVY  212 (400)
Q Consensus       139 ~~~v~~~~~~~~~~d~~~l~~~i~~------~~k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~  212 (400)
                      +++|.+..+++|+++.+++|++.++      ++|+++++||+||.|++++++++..+++++.+ +++.+|+||+|+.-+|
T Consensus       195 ivpv~c~Ss~~f~itv~alE~A~~~A~~~~~kVkGvlitNPsNPLG~~~~~e~L~~ll~Fa~~-kniHvI~DEIya~sVF  273 (471)
T KOG0256         195 IVPVHCSSSNGFQITVEALEAALNQARKLGLKVKGVLITNPSNPLGTTLSPEELISLLNFASR-KNIHVISDEIYAGSVF  273 (471)
T ss_pred             EEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHH-CCEEEEEEHHHHHCCC
T ss_conf             999984067884122999999999999818952489982799977774699999999998864-5627986032100203


Q ss_pred             CCCCCCCCCCCCCC---CCCEEEEECCCCCCCCCCCCCCCCCCC-HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC-
Q ss_conf             01223322211123---332257414654432234454442211-0122687531001222332222222222223467-
Q gi|254780602|r  213 RNCQFSNIVNVEPS---LYERTLVVNGVSKAYAMTGLRIGYAAG-ALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGP-  287 (400)
Q Consensus       213 ~~~~~~s~~~~~~~---~~~~~i~~~S~SK~~~~~G~RiG~~v~-~~~li~~l~~~~~~~~~~~~~~~q~a~~~~l~~~-  287 (400)
                      +...+.|++++...   ..+++.+++|+||.||+||+|+|.+.+ +++++.+..++.+  ...+++..|+.++..|.+. 
T Consensus       274 ~~~~F~Sv~ev~~~~~~~~~rvHivyslSKD~GlpGfRvGviYs~ne~VvsaA~kmss--f~~vSs~tQ~~la~LLSD~~  351 (471)
T KOG0256         274 DKSEFRSVLEVRKDPHLDPDRVHIVYSLSKDFGLPGFRVGVIYSNNEDVVSAATKMSS--FGLVSSQTQYLLASLLSDEE  351 (471)
T ss_pred             CCCCCEEHHHHHHCCCCCCCCEEEEEEECCCCCCCCEEEEEEEECCHHHHHHHHHHHH--CCCCCHHHHHHHHHHHCHHH
T ss_conf             6667137898752645687727999973355698863789998667389999998750--36875899999999843088


Q ss_pred             --CCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECC
Q ss_conf             --643222222110000000245530477603302740899862641023321133224898999999998739799835
Q gi|254780602|r  288 --QDFVVNNRKIFEYRRDLCVAQLQGVPGIRYMIPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQG  365 (400)
Q Consensus       288 --~~~~~~~~~~~~~~r~~~~~~L~~~~g~~~~~p~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG  365 (400)
                        +.|+.+.+.+++.+.+++.++|+++ |+.+.+.+||+|+|+|++.+.....     .....++.++++++.+|.+.||
T Consensus       352 f~~~yl~en~~Rl~~rh~~~~~gLk~l-gI~cl~s~AGlF~wvDlr~lL~s~t-----fe~El~Lw~~i~~~vklnlSpG  425 (471)
T KOG0256         352 FTREYLRENNKRLRIRHRYIVEGLKAL-GIPCLKSNAGLFCWVDLRKLLTSLT-----FEGELELWERILDNVKLNLSPG  425 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCEEECCCCEEEEEEHHHHCCCCC-----HHHHHHHHHHHHHHHCCCCCCC
T ss_conf             999999999999999999997548764-8840306870699976677457578-----1889999999998606325799


Q ss_pred             CCCC--CCCEEEEEEE-CCHHHHHHHHHHHHHHHHH
Q ss_conf             0228--9972899962-9999999999999999986
Q gi|254780602|r  366 SSFG--HGPSIRISYA-VSDAILEEACVRIKRFCHS  398 (400)
Q Consensus       366 ~~Fg--~~~~iRis~~-~~~e~l~~al~rl~~~l~~  398 (400)
                      +.|-  .+||+|++|+ ..++.++.|++||+.++++
T Consensus       426 ~s~~C~EpGWFRvcFAn~~~~t~~~am~Ri~~~~~~  461 (471)
T KOG0256         426 SSCHCHEPGWFRVCFANMSEETLEVAMRRLKQFLDS  461 (471)
T ss_pred             CCCEECCCCEEEEEECCCCHHHHHHHHHHHHHHHHH
T ss_conf             762436898589984248877899999999999874


No 90 
>PRK03262 consensus
Probab=100.00  E-value=0  Score=366.70  Aligned_cols=341  Identities=17%  Similarity=0.239  Sum_probs=266.6

Q ss_pred             HHHHHHCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             88987389758999999999999869972665658974988999999999998388756998778989999999986421
Q gi|254780602|r    5 SNILRRVQPSATLVAAQRVRDLRSKGIDVLCLTAGEPDFDMPENVKYAVVRAMERGETKYTAVAGISPLREAIVEKFRRD   84 (400)
Q Consensus         5 s~~~~~l~~s~~~~~~~~~~~~~~~g~~ii~l~~G~p~~~~p~~i~~a~~~al~~~~~~Y~~~~G~~~lR~aia~~~~~~   84 (400)
                      -+.++.++||..-      ++  -.++.+|.|+..|..+++|+.+.+.       ..+.||+.. ..+||++||+++   
T Consensus        10 r~~i~~l~pY~~~------~~--~~~~~~ikL~sNEnP~~~~~~~~~~-------~lnrYPD~~-~~~Lr~aiA~~~---   70 (355)
T PRK03262         10 RENVRNLTPYQSA------RR--LGGNGDVWLNANEYPTAVEFQLTQQ-------TLNRYPECQ-PKAVIENYAQYA---   70 (355)
T ss_pred             CHHHCCCCCCCCC------CC--CCCCCCEEEECCCCCCCCCHHHHHH-------HHCCCCCCC-HHHHHHHHHHHH---
T ss_conf             8652678998873------44--7999988957899999984877678-------870398998-899999999986---


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCC
Q ss_conf             0133332233233454333322222223322-322223333232222222222222222222223222103331000122
Q gi|254780602|r   85 NDLHYTSDQIIVGTGAKHVIFNALMATVNMG-DEVLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQAITP  163 (400)
Q Consensus        85 ~g~~~~~e~I~it~G~~~~l~~~~~~~~~~G-d~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~  163 (400)
                         +++++||+++||+.++|.++++++++|| |.|+++.|+|..|...++..|++++.+|+.+  +|.+|++.+.+++. 
T Consensus        71 ---gv~~~~I~vGnGSdE~I~~i~~~f~~pg~d~vl~~~PtF~~Y~~~a~~~g~~~~~vp~~~--~~~~dl~~~~~~~~-  144 (355)
T PRK03262         71 ---GVKPEQVLVSRGADEGIELLIRAFCEPGKDAILYCPPTYGMYAVSAETIGVEIRTVPTLE--NWQLDLQAIADNLD-  144 (355)
T ss_pred             ---CCCHHHEEEECCHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHCCCEEEEEECCC--CCCCCHHHHHHHCC-
T ss_conf             ---858557999378999999999998638997799778885999999997398389964655--66768999996404-


Q ss_pred             CCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCC
Q ss_conf             12201211354210000123333211122333332011101221100000122332221112333225741465443223
Q gi|254780602|r  164 KTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAM  243 (400)
Q Consensus       164 ~~k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~~  243 (400)
                      ++|++++||||||||+.++.++++++++.+ +. +.++|.||+|.+|+-+ .   +...+... ++|+|+++||||.||+
T Consensus       145 ~~klv~l~nPNNPTG~~~~~~el~~l~~~~-~~-~~lvVvDEAY~eF~~~-~---s~~~l~~~-~~NliVlRTfSK~~gL  217 (355)
T PRK03262        145 GVKVVYVCSPNNPTGNLINPQDLRTLLELT-RG-KAIVVADEAYIEFCPQ-A---SLAGWLAE-YPNLVILRTLSKAFAL  217 (355)
T ss_pred             CCCEEEECCCCCCCCCCCCHHHHHHHHHHC-CC-CCEEEEECHHHHHCCC-C---CHHHHHHC-CCCEEEEECHHHHHCC
T ss_conf             888899768999876446999999999768-76-7289873025543656-2---15567640-7744676126777246


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCHHHHHHCCCCCE-EEECC
Q ss_conf             44544422110122687531001222332222222222223467-64322222211000000024553047760-33027
Q gi|254780602|r  244 TGLRIGYAAGALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGP-QDFVVNNRKIFEYRRDLCVAQLQGVPGIR-YMIPD  321 (400)
Q Consensus       244 ~G~RiG~~v~~~~li~~l~~~~~~~~~~~~~~~q~a~~~~l~~~-~~~~~~~~~~~~~~r~~~~~~L~~~~g~~-~~~p~  321 (400)
                      +|+|+||+++++++++.+.+++.  ..+++.+.|.++..+|... .+++++..+..++.|+.+.+.|+++++++ +.+++
T Consensus       218 AGlRlGy~ia~~~ii~~l~k~~~--p~~vn~~~~~~a~~al~~~~~~~~~~~i~~i~~~R~~l~~~L~~l~~~~~v~pS~  295 (355)
T PRK03262        218 AGLRCGFTLANEEVINLLLKVIA--PYPLSTPVADIAAQALSPQGIEAMRERVAQINANRAWLIAALKEIACVEQVFDSE  295 (355)
T ss_pred             CCCCEEEEECCHHHHHHHHHHCC--CCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCC
T ss_conf             65350543179999999998438--9987799999999997226599999999999999999999998489986068997


Q ss_pred             CCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCC-CCCCEEEEEEECCHHHHHHHHHHHHHHHHHCC
Q ss_conf             40899862641023321133224898999999998739799835022-89972899962999999999999999998609
Q gi|254780602|r  322 GAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSF-GHGPSIRISYAVSDAILEEACVRIKRFCHSLQ  400 (400)
Q Consensus       322 g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~F-g~~~~iRis~~~~~e~l~~al~rl~~~l~~l~  400 (400)
                      + -|+++++.              ++.++.+.|+ ++||+|.+...| |.++|+||++++++|+     +++-+.|+++|
T Consensus       296 a-NFvl~~~~--------------~~~~~~~~L~-~~gIlVR~~~~~~gl~~~lRisigt~een-----~~~l~aLka~~  354 (355)
T PRK03262        296 T-NYILARFT--------------ASSAVFKSLW-DQGIILRDQNKQPSLSNCLRITIGTREEC-----QRVIDALRAEQ  354 (355)
T ss_pred             C-CEEEEECC--------------CHHHHHHHHH-HCCCEEEECCCCCCCCCEEEEECCCHHHH-----HHHHHHHCCCC
T ss_conf             8-28999789--------------9999999999-69938966888789999899966999999-----99999971387


No 91 
>PRK04781 histidinol-phosphate aminotransferase; Provisional
Probab=100.00  E-value=0  Score=365.98  Aligned_cols=344  Identities=21%  Similarity=0.281  Sum_probs=264.6

Q ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             78898738975899999999999986997266565897498899999999999838875699877898999999998642
Q gi|254780602|r    4 ISNILRRVQPSATLVAAQRVRDLRSKGIDVLCLTAGEPDFDMPENVKYAVVRAMERGETKYTAVAGISPLREAIVEKFRR   83 (400)
Q Consensus         4 ~s~~~~~l~~s~~~~~~~~~~~~~~~g~~ii~l~~G~p~~~~p~~i~~a~~~al~~~~~~Y~~~~G~~~lR~aia~~~~~   83 (400)
                      +-+.++.++||..-      +.  ......|.|+..|..+++|+....+        ...||+.. ..+||++||+++  
T Consensus        10 ~R~~i~~l~~Y~~~------~~--~~~~~~ikL~~NEnp~~~p~~~~~~--------~~RYPD~~-~~~Lr~~lA~~~--   70 (362)
T PRK04781         10 VREDLRAFAGYSSA------RT--SALQGDVWLNANESAWGNPADPDAS--------TRRYPDPQ-PKGLRSALAALY--   70 (362)
T ss_pred             HHHHHHCCCCCCCC------CC--CCCCCCEEEECCCCCCCCCHHHHHH--------HCCCCCCC-HHHHHHHHHHHH--
T ss_conf             46886169998998------77--7899998977989999984444277--------54798998-899999999986--


Q ss_pred             HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCHHHHHH-CC
Q ss_conf             10133332233233454333322222223322-3222233332322222222222222222222-232221033310-00
Q gi|254780602|r   84 DNDLHYTSDQIIVGTGAKHVIFNALMATVNMG-DEVLIPRPYWVSYPDMVALCGGIPVFVDTQQ-DDNFQVSPEKLE-QA  160 (400)
Q Consensus        84 ~~g~~~~~e~I~it~G~~~~l~~~~~~~~~~G-d~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~-~~~~~~d~~~l~-~~  160 (400)
                          .+++|+|++|||+.++|.+++++++.|| |.|+++.|+|..|...++..|++++.+|+.+ +.+|..|++++. ..
T Consensus        71 ----gv~~~~I~~GnGSdE~I~ll~~a~~~pg~d~vl~~~PtF~~Y~~~a~~~g~~~~~vpl~~~~~~f~~d~~~~~~~~  146 (362)
T PRK04781         71 ----GCAPEQLLIGRGSDEAIDLLVRGLCVPERDAVLVTPPVFGMYAVCARLQNAPLVEVPLVDGADGFHADVPAIVAAA  146 (362)
T ss_pred             ----CCCHHHEEEECCHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHHHHHH
T ss_conf             ----8695579983678999999999995589854884797468999999983987999957555124677999999885


Q ss_pred             CCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCC
Q ss_conf             12212201211354210000123333211122333332011101221100000122332221112333225741465443
Q gi|254780602|r  161 ITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKA  240 (400)
Q Consensus       161 i~~~~k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~  240 (400)
                      +++++|+++|||||||||++++.++++++++.| +. +.+||.||+|.+|.  +  ..+...+... ++|+|+++||||.
T Consensus       147 ~~~~~klv~l~nPNNPTG~~~~~~~l~~~~~~~-~~-~~lvvvDEAY~eF~--~--~~s~~~l~~~-~~NliVlRTfSK~  219 (362)
T PRK04781        147 LASNAKLVFLCSPSNPAGSAIALDQIETALQAL-QG-KALVVVDEAYGEFS--D--VPSAVGLLAR-YDNLAVLRTLSKA  219 (362)
T ss_pred             HCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHC-CC-CCEEEEECHHHHHC--C--CCCHHHHHHC-CCCEEEEECHHHH
T ss_conf             267988899868989735567989999999757-99-80899834165525--7--8434457651-7854533140587


Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCHHHHHHCCCCCEEEE
Q ss_conf             223445444221101226875310012223322222222222234676-4322222211000000024553047760330
Q gi|254780602|r  241 YAMTGLRIGYAAGALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGPQ-DFVVNNRKIFEYRRDLCVAQLQGVPGIRYMI  319 (400)
Q Consensus       241 ~~~~G~RiG~~v~~~~li~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~-~~~~~~~~~~~~~r~~~~~~L~~~~g~~~~~  319 (400)
                      ||++|+|+||+++++++++.+.+++.  ..+++++.|.++.++|.... ++..+.....+..|+.+.+.|++++|+...-
T Consensus       220 ygLAGlRlGy~ia~~~~i~~l~k~~~--p~~v~~~a~~~a~~al~~~~~~~~~~~v~~i~~eR~~l~~~L~~l~g~~~v~  297 (362)
T PRK04781        220 HALAAARIGSLIANAELIAVLRRCQA--PYPVPTPCAAMAEQALSAPALAVTARRVAEVRAERERLHAALAQLPGVRQVY  297 (362)
T ss_pred             HHCCCCCEEEEECCHHHHHHHHHHCC--CCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEC
T ss_conf             40755350444179999999998217--9887599999999996076699999999999999999999998478985568


Q ss_pred             CCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCC-CCCCEEEEEEECCHH--HHHHHHHHHHH
Q ss_conf             2740899862641023321133224898999999998739799835022-899728999629999--99999999999
Q gi|254780602|r  320 PDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSF-GHGPSIRISYAVSDA--ILEEACVRIKR  394 (400)
Q Consensus       320 p~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~F-g~~~~iRis~~~~~e--~l~~al~rl~~  394 (400)
                      |..+.|+++++.              +..++.+.|+ ++||+|.++..| |.++|+||++++++|  .+-++++++.+
T Consensus       298 pS~aNFil~~~~--------------~a~~~~~~L~-~~gIlVR~~~~~p~l~~~lRisigt~een~~ll~aL~~i~e  360 (362)
T PRK04781        298 PSQGNFLLVRFD--------------DAEAAFQALL-AAGVVVRDQRAVPRLSDALRITIGTPEQNDRVLAALQRTQE  360 (362)
T ss_pred             CCCCEEEEEECC--------------CHHHHHHHHH-HCCCEEEECCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHH
T ss_conf             998849998779--------------9999999999-49939970788789999799980999999999999999996


No 92 
>COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]
Probab=100.00  E-value=0  Score=363.34  Aligned_cols=331  Identities=24%  Similarity=0.348  Sum_probs=277.7

Q ss_pred             CCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             97266565897498899999999999838875699877898999999998642101333322332334543333222222
Q gi|254780602|r   31 IDVLCLTAGEPDFDMPENVKYAVVRAMERGETKYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFNALMA  110 (400)
Q Consensus        31 ~~ii~l~~G~p~~~~p~~i~~a~~~al~~~~~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l~~~~~~  110 (400)
                      .++++|+.++..+++|+.+++++.++++ ..+.||+. ...+||+++++++..     +++++|++++|+.+.|..++++
T Consensus        22 ~~~i~LssNenP~gp~~~~~~~~~~~~~-~~~rYPd~-~~~~l~~a~a~~~~~-----~~~~~V~~gnGsde~i~~l~~~   94 (356)
T COG0079          22 PGIIKLSSNENPYGPPPKVIEAIRAALD-KLNRYPDP-DYRELRAALAEYYGV-----VDPENVLVGNGSDELIELLVRA   94 (356)
T ss_pred             CCCEEECCCCCCCCCCHHHHHHHHHHHH-HHHCCCCC-CHHHHHHHHHHHHCC-----CCCCEEEEECCHHHHHHHHHHH
T ss_conf             6554624788999998999999998788-86429996-179999999998479-----9802399827848999999999


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf             23322322223333232222222222222222222223222103331000122122012113542100001233332111
Q gi|254780602|r  111 TVNMGDEVLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALA  190 (400)
Q Consensus       111 ~~~~Gd~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~k~i~l~nP~NPTG~v~s~~~l~~i~  190 (400)
                      ++.|||+|+++.|+|..|...++..|++++.+++.+   |..|++.+.+.+.++++++|+||||||||+.++.+++++++
T Consensus        95 ~~~~gd~vl~~~Ptf~~Y~~~a~~~g~~~~~v~~~~---~~~d~~~~~~~~~~~~~lv~i~nPNNPTG~~~~~~~l~~l~  171 (356)
T COG0079          95 FVEPGDTVLIPEPTFSMYEIAAQLAGAEVVKVPLKE---FRLDLDAILAAIRDKTKLVFLCNPNNPTGTLLPREELRALL  171 (356)
T ss_pred             HHCCCCEEEECCCCHHHHHHHHHHCCCEEEEECCCC---CCCCHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHH
T ss_conf             617898599817880788999997698699944644---44588999865146888899959959988876999999999


Q ss_pred             CCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf             22333332011101221100000122332221112333225741465443223445444221101226875310012223
Q gi|254780602|r  191 DVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTGLRIGYAAGALSLIKSMIVLQGQQTS  270 (400)
Q Consensus       191 ~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~v~~~~li~~l~~~~~~~~~  270 (400)
                      +.+ .. +.+||.||+|.+|.-     .+...+.. .++|++++.||||.|+++|+|+||+++++++++.+.+.+.  .+
T Consensus       172 ~~~-~~-~~~vVvDEAY~eF~~-----~~~~~l~~-~~~nlivlRTfSKa~gLAGlRlGy~ia~~~~i~~l~~vr~--p~  241 (356)
T COG0079         172 EAL-PE-GGLVVIDEAYIEFSP-----ESSLELLK-YPPNLIVLRTFSKAFGLAGLRVGYAIANPELIAALNKVRP--PF  241 (356)
T ss_pred             HHC-CC-CCEEEEECCCCCCCC-----CHHHHHHC-CCCCEEEEECCHHHHCCCHHCEEEHCCCHHHHHHHHHHCC--CC
T ss_conf             838-78-858999775310278-----24545521-4898899954678640211333402089999999998307--88


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCE-EEECCCCEEEEEECCCCCCCCCCCCCCCCCHHH
Q ss_conf             3222222222222346764322222211000000024553047760-330274089986264102332113322489899
Q gi|254780602|r  271 GACSIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQGVPGIR-YMIPDGAFYLYPSCQDLIGKKSPSGDVIRTDLD  349 (400)
Q Consensus       271 ~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~~~~~L~~~~g~~-~~~p~g~~y~~~~~~~~~~~~~~~~~~~~~~~~  349 (400)
                      +++.+.|.++.++|+. ++|+++.++...+.|+.+.+.|+.++ +. +.+++ +-|+++++++           .. ..+
T Consensus       242 ~v~~~a~~aa~aal~~-~~~~~~~~~~~~~~r~rl~~~l~~~~-~~~v~pS~-aNFvlv~~~~-----------~~-~~~  306 (356)
T COG0079         242 NVSSPALAAAIAALRD-ADYLEESVERIREERERLYAALKALG-LFGVFPSQ-ANFVLVRVPD-----------AE-AAA  306 (356)
T ss_pred             CCCHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCCCCC-CCEEEEECCC-----------CC-HHH
T ss_conf             8889999999986024-89999999999999999999997379-87015588-8779997586-----------21-999


Q ss_pred             HHHHHHHHCCEEEECCCCC-CCCCEEEEEEECCHHHHHHHHHHHHHHHHH
Q ss_conf             9999998739799835022-899728999629999999999999999986
Q gi|254780602|r  350 FVNGLLEIEKVAVVQGSSF-GHGPSIRISYAVSDAILEEACVRIKRFCHS  398 (400)
Q Consensus       350 ~~~~Ll~~~gV~v~pG~~F-g~~~~iRis~~~~~e~l~~al~rl~~~l~~  398 (400)
                      +.+.|+ ++||.+++...- ..++|+||+.++++|+ +.-++.|+++++.
T Consensus       307 l~~~L~-~~giivR~~~~~~~~~~~lRitvgt~een-~~ll~AL~~~~~~  354 (356)
T COG0079         307 LAEALL-KKGILVRDCSSVGLLPGYLRITVGTPEEN-DRLLAALREVLKG  354 (356)
T ss_pred             HHHHHH-HCCEEEEECCCCCCCCCEEEEECCCHHHH-HHHHHHHHHHHHC
T ss_conf             999998-78989985777788887599965988999-9999999998731


No 93 
>PRK01688 histidinol-phosphate aminotransferase; Provisional
Probab=100.00  E-value=0  Score=362.61  Aligned_cols=331  Identities=18%  Similarity=0.258  Sum_probs=261.3

Q ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             78898738975899999999999986997266565897498899999999999838875699877898999999998642
Q gi|254780602|r    4 ISNILRRVQPSATLVAAQRVRDLRSKGIDVLCLTAGEPDFDMPENVKYAVVRAMERGETKYTAVAGISPLREAIVEKFRR   83 (400)
Q Consensus         4 ~s~~~~~l~~s~~~~~~~~~~~~~~~g~~ii~l~~G~p~~~~p~~i~~a~~~al~~~~~~Y~~~~G~~~lR~aia~~~~~   83 (400)
                      +-+.++.++||..-      ++  -.+..+|.|+..|..++++..+.+   +    ..+.||+.. ..+||+++|+++  
T Consensus         9 ~r~~i~~l~pY~~~------~~--~~~~~~ikL~sNEnP~~p~~~~~~---~----~lnrYPD~~-~~~Lr~alA~~~--   70 (355)
T PRK01688          9 ARENVRALTPYQSA------RR--LGGNGDVWLNANEYPTAVEFQLTQ---Q----TLNRYPECQ-PKAVIENYAQYA--   70 (355)
T ss_pred             HCHHHCCCCCCCCC------CC--CCCCCCEEEECCCCCCCCCHHHHH---H----HHCCCCCCC-HHHHHHHHHHHH--
T ss_conf             57552478998873------55--899996895789998998776767---8----862497998-899999999986--


Q ss_pred             HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCC
Q ss_conf             10133332233233454333322222223322-32222333323222222222222222222222322210333100012
Q gi|254780602|r   84 DNDLHYTSDQIIVGTGAKHVIFNALMATVNMG-DEVLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQAIT  162 (400)
Q Consensus        84 ~~g~~~~~e~I~it~G~~~~l~~~~~~~~~~G-d~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~  162 (400)
                          ++++|+|+++||+.++|.++++++++|| |.|++..|+|..|...++.+|++++.+|+++  +|.+|++++.+.++
T Consensus        71 ----gv~~e~I~vGnGSdElI~~l~raf~~pg~d~vl~~~PtF~~Y~~~a~~~g~~~~~vpl~~--~f~~d~~~~~~~~~  144 (355)
T PRK01688         71 ----GVKPEQVLVSRGADEGIELLIRAFCEPGKDAILYCPPTYGMYSVSAETIGVECRTVPTLE--NWQLDLPAISDNLD  144 (355)
T ss_pred             ----CCCHHHEEEECCHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHCCCEEEEECCCC--CCCCCHHHHHHHCC
T ss_conf             ----858778998168999999999998558997499778876899999986795799952765--76869999997515


Q ss_pred             CCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCC
Q ss_conf             21220121135421000012333321112233333201110122110000012233222111233322574146544322
Q gi|254780602|r  163 PKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYA  242 (400)
Q Consensus       163 ~~~k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~  242 (400)
                       ++|++++||||||||+.++.++++++++.+ +. +.+||.||+|.+|+-+    .+...+... ++|+|++.||||.||
T Consensus       145 -~~klvficNPNNPTG~~~~~~~l~~l~~~~-~~-~~lvVvDEAY~eF~~~----~s~~~l~~~-~~NliVlRTfSK~~g  216 (355)
T PRK01688        145 -GVKVVYVCSPNNPTGNLINPQDLRTLLELT-RG-KAIVVADEAYIEFCPQ----ASLAGWLAE-YPHLVILRTLSKAFA  216 (355)
T ss_pred             -CCCEEEECCCCCCCCCCCCHHHHHHHHHHC-CC-CCEEEEECHHHHCCCC----HHHHHHHHC-CCEEEEEEEHHHHHC
T ss_conf             -888899868999877646899999999758-88-8668855416434764----004567640-772899951668752


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCHHHHHHCCCCC-EEEEC
Q ss_conf             344544422110122687531001222332222222222223467-6432222221100000002455304776-03302
Q gi|254780602|r  243 MTGLRIGYAAGALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGP-QDFVVNNRKIFEYRRDLCVAQLQGVPGI-RYMIP  320 (400)
Q Consensus       243 ~~G~RiG~~v~~~~li~~l~~~~~~~~~~~~~~~q~a~~~~l~~~-~~~~~~~~~~~~~~r~~~~~~L~~~~g~-~~~~p  320 (400)
                      ++|+|+||+++++++++.+.+++.  ..+++.+.|.++.++|.+. .+++.+..+...+.|+.+.+.|++++++ ++.++
T Consensus       217 LAGlRlGy~ia~~~ii~~l~k~~~--p~~vn~~~~~~a~~al~~~~~~~~~~~~~~i~~~R~~l~~~L~~l~~~~~v~pS  294 (355)
T PRK01688        217 LAGLRCGFTLANEEVINLLLKVIA--PYPLSTPVADIAAQALSPQGIAAMRERVAQINANRQWLIAALKEIPCVEQVFDS  294 (355)
T ss_pred             CCCCCEEEEECCHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCC
T ss_conf             687312788509999999998507--897539999999999720459999999999999999999999858998616899


Q ss_pred             CCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCC-CCCCCEEEEEEECCHHH
Q ss_conf             74089986264102332113322489899999999873979983502-28997289996299999
Q gi|254780602|r  321 DGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSS-FGHGPSIRISYAVSDAI  384 (400)
Q Consensus       321 ~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~-Fg~~~~iRis~~~~~e~  384 (400)
                      ++. |+++++.              ++.++.+.|+ ++||+|++.+. +|.++|+||++++++|+
T Consensus       295 ~aN-Fil~~~~--------------~~~~~~~~L~-~~GIlVR~~~~~~gl~~~lRItigt~een  343 (355)
T PRK01688        295 ETN-YILARFT--------------ASSAVFKSLW-DQGIILRDQNKQPGLSNCLRITIGTREEC  343 (355)
T ss_pred             CCC-EEEEECC--------------CHHHHHHHHH-HCCEEEEECCCCCCCCCEEEEECCCHHHH
T ss_conf             887-8999779--------------9999999999-79909955898789999899976999999


No 94 
>PRK04635 histidinol-phosphate aminotransferase; Provisional
Probab=100.00  E-value=0  Score=362.96  Aligned_cols=339  Identities=19%  Similarity=0.250  Sum_probs=266.1

Q ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             78898738975899999999999986997266565897498899999999999838875699877898999999998642
Q gi|254780602|r    4 ISNILRRVQPSATLVAAQRVRDLRSKGIDVLCLTAGEPDFDMPENVKYAVVRAMERGETKYTAVAGISPLREAIVEKFRR   83 (400)
Q Consensus         4 ~s~~~~~l~~s~~~~~~~~~~~~~~~g~~ii~l~~G~p~~~~p~~i~~a~~~al~~~~~~Y~~~~G~~~lR~aia~~~~~   83 (400)
                      +.+.+++|+||..    .  +  +..+.++|.|+..|..+++++.+..+       ..+.||+.. ..+||+++|+++  
T Consensus         5 ~r~~i~~l~pY~~----~--~--~~~~~~~ikL~sNEnP~~~~~~~~~~-------~lnRYPD~~-~~~L~~~lA~~~--   66 (346)
T PRK04635          5 ARKQVQALTPYLS----A--R--RIGGSGDVWLNANESPFDNEYKTNFA-------RLNRYSECQ-PKELIQAYAAYA--   66 (346)
T ss_pred             HHHHHCCCCCCCC----C--C--CCCCCCCEEEECCCCCCCCCHHHHHH-------HHCCCCCCC-HHHHHHHHHHHH--
T ss_conf             1233247899899----7--7--78998948937999999985656599-------836799988-899999999996--


Q ss_pred             HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCC
Q ss_conf             10133332233233454333322222223322-32222333323222222222222222222222322210333100012
Q gi|254780602|r   84 DNDLHYTSDQIIVGTGAKHVIFNALMATVNMG-DEVLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQAIT  162 (400)
Q Consensus        84 ~~g~~~~~e~I~it~G~~~~l~~~~~~~~~~G-d~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~  162 (400)
                          ++++|||++|+|+.++|.++++++++|| |.|+++.|+|..|...++..|++++.+|++++  |..|++.+++.+ 
T Consensus        67 ----~v~~~~Ii~gnGSde~I~~i~~af~~pg~d~vl~~~PtF~~Y~~~a~~~g~~~~~vpl~~d--~~~dl~~l~~~~-  139 (346)
T PRK04635         67 ----GVKPEQVLTSRGADEGIELLIRAFCEPNQDAILYCPPTYGMYAISAETIGVERKTVPLTSD--WQLDLPSIEANL-  139 (346)
T ss_pred             ----CCCHHHEEECCCHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHCCCEEEEEECCCC--CCCCHHHHHHHC-
T ss_conf             ----8696689984889999999999984699976997787569999999747967999736856--577999998643-


Q ss_pred             CCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCC
Q ss_conf             21220121135421000012333321112233333201110122110000012233222111233322574146544322
Q gi|254780602|r  163 PKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYA  242 (400)
Q Consensus       163 ~~~k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~  242 (400)
                      +++|++++||||||||++++.++++++++.+ ++ +.+||.||+|.+|.-+    .+...+... ++|+|+++||||.||
T Consensus       140 ~~~kli~l~NPNNPTG~~~~~~~l~~l~~~~-~~-~~lvVvDEAY~ef~~~----~s~~~l~~~-~~NliVlRTfSK~~g  212 (346)
T PRK04635        140 DNVKLVFVCSPNNPTGNLVKRKDIISLLEMT-KD-RAIVVMDEAYIDFCPE----ASTVDLLAQ-YPNLAILRTLSKAFA  212 (346)
T ss_pred             CCCCEEEECCCCCCCCCCCCHHHHHHHHHHC-CC-CCEEEEECCEECCCCC----CCHHHHHHH-CCCEEEEECHHHHHC
T ss_conf             4875899778999876448999999999848-75-6559987453103656----446789860-881687505678740


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCHHHHHHCCCCCEEEEC
Q ss_conf             344544422110122687531001222332222222222223467643222--222110000000245530477603302
Q gi|254780602|r  243 MTGLRIGYAAGALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGPQDFVVN--NRKIFEYRRDLCVAQLQGVPGIRYMIP  320 (400)
Q Consensus       243 ~~G~RiG~~v~~~~li~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~--~~~~~~~~r~~~~~~L~~~~g~~~~~p  320 (400)
                      ++|+|+||+++++++++.+.+++.  ..+++.+.|.++..+|.+. ++...  ......+.|+.+...|..++|+++.++
T Consensus       213 LaGlRlGY~ia~~~~i~~l~k~~~--p~~v~~~a~~~a~~al~~~-~~~~~~~~~~~~~~~r~~l~~~l~~~~g~~~~~s  289 (346)
T PRK04635        213 LAGLRCGFTLANEELINVLLKVIA--PYPVPVPVAEIATQALSEA-GLARAKFQVLDLSANRAYLQAGLSMLPGVTVFEG  289 (346)
T ss_pred             CCCCCCEEECCCHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCC
T ss_conf             654111410079999999998408--9888899999999997307-8999999999999999999999986799077899


Q ss_pred             CCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHH
Q ss_conf             74089986264102332113322489899999999873979983502289972899962999999999999999998
Q gi|254780602|r  321 DGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGHGPSIRISYAVSDAILEEACVRIKRFCH  397 (400)
Q Consensus       321 ~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~iRis~~~~~e~l~~al~rl~~~l~  397 (400)
                      ++.| ++++++              +..++.+.|+ ++||.|..+   +.++|+|||.++ +++.++.++.|++|.|
T Consensus       290 ~aNF-il~~~~--------------~~~~~~~~l~-~~GI~VR~~---~~~~~iRISvGt-~eEn~~~l~~lr~~~~  346 (346)
T PRK04635        290 WGNY-LLVKFP--------------DGDALFKAAW-DHGIILRNS---PIENCVRISVGN-REECEKTLGFIRNYYQ  346 (346)
T ss_pred             CCCE-EEEECC--------------CHHHHHHHHH-HCCEEECCC---CCCCEEEEECCC-HHHHHHHHHHHHHHHC
T ss_conf             8808-999889--------------9999999998-399598569---999979995399-9999999999999859


No 95 
>KOG0258 consensus
Probab=100.00  E-value=0  Score=336.52  Aligned_cols=389  Identities=22%  Similarity=0.337  Sum_probs=295.0

Q ss_pred             HHHHHHHCCCCHHH-HHHHHHHHHHHCCC--------CEEECCCCCCC--------C--------------C---CCHHH
Q ss_conf             78898738975899-99999999998699--------72665658974--------9--------------8---89999
Q gi|254780602|r    4 ISNILRRVQPSATL-VAAQRVRDLRSKGI--------DVLCLTAGEPD--------F--------------D---MPENV   49 (400)
Q Consensus         4 ~s~~~~~l~~s~~~-~~~~~~~~~~~~g~--------~ii~l~~G~p~--------~--------------~---~p~~i   49 (400)
                      +|+++.+.+ +..+ .+.-+|.|++.+.+        +||+-++|+|.        |              .   -|..+
T Consensus        13 ~N~~V~k~e-YAVRG~i~~rA~El~~eL~~~~~~PF~eiI~aNIGnpqamgQ~PiTF~RQvlal~~~p~lLd~~~fp~Da   91 (475)
T KOG0258          13 LNPNVKKAE-YAVRGPIVIRADELEKELKKGVKKPFDEIIRANIGNPQAMGQKPITFLRQVLALCQYPELLDSPEFPTDA   91 (475)
T ss_pred             CCHHHHHHH-HHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCHHHHCCCCHHHHHHHHHHHCCHHHCCCCCCCHHH
T ss_conf             472555333-3212415566899999997377688178784147997881788647999999995474330788897689


Q ss_pred             HHHHHHHHHC--CC-CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCC
Q ss_conf             9999999838--87-569987789899999999864210133332233233454333322222223-3223222233332
Q gi|254780602|r   50 KYAVVRAMER--GE-TKYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFNALMATV-NMGDEVLIPRPYW  125 (400)
Q Consensus        50 ~~a~~~al~~--~~-~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l~~~~~~~~-~~Gd~Vlv~~P~y  125 (400)
                      ++.....+++  |. ..|.+++|.+-+|+.+|+|..+|.|...+|++|.+|.|++.|+..++..++ .+.|.|++|-|.|
T Consensus        92 i~RA~~~L~~~gGs~GaYS~SqGv~~vR~~VA~~I~rRDG~p~~p~dI~LT~GAS~ai~~il~l~~~~~~~GvliPiPQY  171 (475)
T KOG0258          92 IKRAKRILNDCGGSLGAYSDSQGVPGVRKHVAEFIERRDGIPADPEDIFLTTGASPAIRSILSLLIAGKKTGVLIPIPQY  171 (475)
T ss_pred             HHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHEEECCCCCHHHHHHHHHHHCCCCCCEEEECCCC
T ss_conf             99999999756876455302457736899999998852689898777553278858999999999658987037526877


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCC-----CCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf             32222222222222222222223222103331000122-----1220121135421000012333321112233333201
Q gi|254780602|r  126 VSYPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQAITP-----KTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVH  200 (400)
Q Consensus       126 ~~y~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~-----~~k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~  200 (400)
                      |.|...+...|+..+++-++++++|.+|.++|++.+.+     ++|++++.||.||||.++|++.+++|+++|++ .++.
T Consensus       172 PLYsAti~l~~~~~v~YyLdEe~~W~ld~~el~~~~~eA~k~i~~r~lvvINPGNPTGqvls~e~ie~i~~fa~~-~~l~  250 (475)
T KOG0258         172 PLYSATISLLGGTQVPYYLDEESNWSLDVAELERSVDEARKGINPRALVVINPGNPTGQVLSEENIEGIICFAAE-EGLV  250 (475)
T ss_pred             CHHHHHHHHHCCCCCCEEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHCHHHHHHHHHHHHH-CCCE
T ss_conf             404888997288335435433447778899999999998616884189997799961145068779999999987-3707


Q ss_pred             EECCCCCCCCCCCCC-CCCCCCCCCCCC----CCE--EEEECCCCCCC-CCCCCCCCCCCC---HHHHHHHHHHHCCCCC
Q ss_conf             110122110000012-233222111233----322--57414654432-234454442211---0122687531001222
Q gi|254780602|r  201 IISDDIYEHIVYRNC-QFSNIVNVEPSL----YER--TLVVNGVSKAY-AMTGLRIGYAAG---ALSLIKSMIVLQGQQT  269 (400)
Q Consensus       201 ii~De~Y~~l~~~~~-~~~s~~~~~~~~----~~~--~i~~~S~SK~~-~~~G~RiG~~v~---~~~li~~l~~~~~~~~  269 (400)
                      ++.||+|.+-+|.+. +|.|+....-++    .++  ++.++|.||.+ +-.|.|-||+-.   +++.-.++.++.+ ..
T Consensus       251 llaDEVYQ~Nvy~~~skFhSfKKvl~emg~~~~~~v~L~SfhSvSKGy~gECG~RGGYmEv~n~~prv~~qi~Kl~s-i~  329 (475)
T KOG0258         251 LLADEVYQDNVYTTGSKFHSFKKVLHEMGNPYPDNVSLASFHSVSKGYMGECGQRGGYMESLNRDPRVKQQIKKLAS-IK  329 (475)
T ss_pred             EECHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCEEEECCCCCEEECCCCCHHHHHHHHHHHH-HH
T ss_conf             73268887632578760274999999846867785577661035522112305567732110588278777898875-64


Q ss_pred             CCCCCCCCCCCCCCCCCC----CC---CC---CCCCCCCCCCCCCHHHHHHCCCCCEEEECCCCEEEEEECCCCCCCCCC
Q ss_conf             332222222222223467----64---32---222221100000002455304776033027408998626410233211
Q gi|254780602|r  270 SGACSIAQWAAVEALNGP----QD---FV---VNNRKIFEYRRDLCVAQLQGVPGIRYMIPDGAFYLYPSCQDLIGKKSP  339 (400)
Q Consensus       270 ~~~~~~~q~a~~~~l~~~----~~---~~---~~~~~~~~~~r~~~~~~L~~~~g~~~~~p~g~~y~~~~~~~~~~~~~~  339 (400)
                      .|++...|...-.....+    .+   +.   ......+++|.+.+.+.+++++|++|.+|+|+||+|+.+.-.......
T Consensus       330 lc~~V~GQ~~vdl~VnPP~Pgd~Sy~~~~~Ekd~il~~l~~ra~l~~~~~ns~~gi~cn~~qGAMY~fP~i~lP~kaie~  409 (475)
T KOG0258         330 LCPQVSGQKLVDLVVNPPKPGDPSYDLFSSEKDGILSSLRSRAKLTEDAFNSLEGISCNPVQGAMYLFPQISLPPKAIEA  409 (475)
T ss_pred             HCCCCCCHHHHCEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCEEECCCCCCCHHHHHH
T ss_conf             16675322533201589999984266666666768999987628899987505764632676223534534678889999


Q ss_pred             C-CCCCCCHHHHHHHHHHHCCEEEECCCCCCCC-C--EEEEEEECCHHHHHHHHHHHHHHHHH
Q ss_conf             3-3224898999999998739799835022899-7--28999629999999999999999986
Q gi|254780602|r  340 S-GDVIRTDLDFVNGLLEIEKVAVVQGSSFGHG-P--SIRISYAVSDAILEEACVRIKRFCHS  398 (400)
Q Consensus       340 ~-~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~-~--~iRis~~~~~e~l~~al~rl~~~l~~  398 (400)
                      . ......|+-+|.+||++.||+++||++||.. |  |+|.+|..+.  + +-++|+++|-+.
T Consensus       410 A~~~~~~PD~FYc~~LLe~tGIcvVPGSGFGQ~~GtyH~R~TiLp~~--~-~~i~~~~~fH~~  469 (475)
T KOG0258         410 AKALGIAPDEFYCLKLLEATGICVVPGSGFGQKEGTYHFRTTILPPG--L-EIIEKFKKFHAE  469 (475)
T ss_pred             HHHHCCCCHHHHHHHHHHHCCEEEECCCCCCCCCCEEEEEEEECCCH--H-HHHHHHHHHHHH
T ss_conf             99708997089999999765758834887788985048888625706--5-999999999999


No 96 
>PRK08354 putative aminotransferase; Provisional
Probab=100.00  E-value=0  Score=336.71  Aligned_cols=304  Identities=21%  Similarity=0.306  Sum_probs=228.4

Q ss_pred             CCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             97266565897498899999999999838875699877898999999998642101333322332334543333222222
Q gi|254780602|r   31 IDVLCLTAGEPDFDMPENVKYAVVRAMERGETKYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFNALMA  110 (400)
Q Consensus        31 ~~ii~l~~G~p~~~~p~~i~~a~~~al~~~~~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l~~~~~~  110 (400)
                      .++|+|+..+..+ +|+.+.+++.++++. ...||..   .+||+++|+++    |     ++|++++|++++|.++..+
T Consensus         8 ~~iidfssN~NP~-~P~~~~~~~~~~~~~-~~~YP~~---~~L~~~la~~~----g-----~~i~~~~Gs~e~i~~l~~~   73 (312)
T PRK08354          8 EGLIDFSASVNPY-PPEWLDEMFERAVEI-SGRYTYY---EWLEEEFSKLF----G-----EPITITAGITEALYLIGIL   73 (312)
T ss_pred             HHCEEECCCCCCC-CCHHHHHHHHHHHHH-HCCCCCH---HHHHHHHHHHH----C-----CCEEECCCHHHHHHHHHHH
T ss_conf             6416607999999-972999999960564-0049998---99999998876----8-----7969926799999999999


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf             23322322223333232222222222222222222223222103331000122122012113542100001233332111
Q gi|254780602|r  111 TVNMGDEVLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALA  190 (400)
Q Consensus       111 ~~~~Gd~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~k~i~l~nP~NPTG~v~s~~~l~~i~  190 (400)
                      ++ +||+|+++.|+|..|...++..|++++.+++        |++.+++.+ ++++++++||||||||++++.+++++++
T Consensus        74 ~~-~~~~vl~~~Ptf~~Y~~~a~~~g~~v~~~~~--------d~~~l~~~~-~~~~~v~l~nPNNPTG~~~~~~~l~~l~  143 (312)
T PRK08354         74 AL-RDRKVIIPRHTYGEYERVARFFAARIIKGPN--------DPEKLEELV-EKNSVVFFCNPNNPDGKYYNFKELAPLI  143 (312)
T ss_pred             HC-CCCEEEEECCCHHHHHHHHHHCCCEEEECCC--------CHHHHHHHH-CCCCEEEEECCCCCCCCCCCHHHHHHHH
T ss_conf             76-9898999359999999999986987873599--------989998630-4898899968989867868989999999


Q ss_pred             CCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf             22333332011101221100000122332221112333225741465443223445444221101226875310012223
Q gi|254780602|r  191 DVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTGLRIGYAAGALSLIKSMIVLQGQQTS  270 (400)
Q Consensus       191 ~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~v~~~~li~~l~~~~~~~~~  270 (400)
                      +.|. .++++||.||+|.+|+.+...        ++ ++|+|+++||||.|++||+|+||+++++++++++.     ...
T Consensus       144 ~~~~-~~~~~vvvDEAY~ef~~~~~~--------~~-~~nlivlrS~SK~~glaGlRlGy~i~~~e~i~~~r-----~p~  208 (312)
T PRK08354        144 DAVE-DKNVLLILDEAFIDFVKKAES--------PE-GENIIKLRTFTKSYGVPGIRVGYVKGFEEAFRSVR-----MPW  208 (312)
T ss_pred             HHCC-CCCCEEEEECHHHHHCCCCCC--------CC-CCCEEEEEECCHHHCCCCHHHHHHHCCHHHHHHHC-----CCC
T ss_conf             8647-778489974047773676334--------77-79889997462643574043436627899999863-----898


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCHHHH
Q ss_conf             32222222222223467643222222110000000245530477603302740899862641023321133224898999
Q gi|254780602|r  271 GACSIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQGVPGIRYMIPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDF  350 (400)
Q Consensus       271 ~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~~~~~L~~~~g~~~~~p~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~  350 (400)
                      +++++.|.++..++.+..+++++.++.+.+.|+.+       .+....++++.| ++++++              +..++
T Consensus       209 ~vn~~a~~~~~~~l~d~~~~~~~~~~~~~~er~~l-------~~~~~~~s~aNF-il~~~~--------------~a~~~  266 (312)
T PRK08354        209 GIGSLGYAFLEFLLEDNFEHLKKTLPLIWREKERF-------EKFLYVKSDANF-FIKDVG--------------DAEKF  266 (312)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HCCCCCCCCCCE-EEEECC--------------CHHHH
T ss_conf             87499999999998816999999999999999999-------562368996738-998779--------------99999


Q ss_pred             HHHHHHHCCEEEECCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHH
Q ss_conf             99999873979983502289972899962999999999999999998
Q gi|254780602|r  351 VNGLLEIEKVAVVQGSSFGHGPSIRISYAVSDAILEEACVRIKRFCH  397 (400)
Q Consensus       351 ~~~Ll~~~gV~v~pG~~Fg~~~~iRis~~~~~e~l~~al~rl~~~l~  397 (400)
                      ++.| .++||+|.+++.||.++|+||++++++| -+.-++.|++|..
T Consensus       267 ~~~L-~~~gIlVR~~~~fgl~~~iRisvg~~ee-n~~li~aLke~~~  311 (312)
T PRK08354        267 VEFL-KRNGILVRDCTSFGLPGYVRFSVRDREE-NEKLLNALREWRL  311 (312)
T ss_pred             HHHH-HHCCEEEEECCCCCCCCEEEEECCCHHH-HHHHHHHHHHHHC
T ss_conf             9999-8399199968999999989997199999-9999999998851


No 97 
>KOG0634 consensus
Probab=100.00  E-value=0  Score=333.66  Aligned_cols=361  Identities=23%  Similarity=0.319  Sum_probs=279.7

Q ss_pred             HCCCCEEECCCCCCC---CCCCH--------HHHHHH----------HHHHHC------CCCCCCCCCCCHHHHHHHHHH
Q ss_conf             869972665658974---98899--------999999----------999838------875699877898999999998
Q gi|254780602|r   28 SKGIDVLCLTAGEPD---FDMPE--------NVKYAV----------VRAMER------GETKYTAVAGISPLREAIVEK   80 (400)
Q Consensus        28 ~~g~~ii~l~~G~p~---~~~p~--------~i~~a~----------~~al~~------~~~~Y~~~~G~~~lR~aia~~   80 (400)
                      +.+.++|.|+.|-|+   ||.-.        ++.|..          .....+      ..+||+++.|.|+|+..|.++
T Consensus        33 ~~~i~~i~lagGlPnp~~fp~~~~s~~p~~~~~~e~~~~~~~~~~~~~~~~~~~~l~~s~alQYg~s~G~peLl~fik~h  112 (472)
T KOG0634          33 ASPISIISLAGGLPNPDYFPIRSDSIKPQGSWKKENGKKLNNVTFAFENEASENTLPLSRALQYGQSSGIPELLLFIKDH  112 (472)
T ss_pred             CCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHH
T ss_conf             38976387158999998656545544635675113665112124540136874533156663145446848999999874


Q ss_pred             HH-HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHC
Q ss_conf             64-21013333223323345433332222222332232222333323222222222222222222222322210333100
Q gi|254780602|r   81 FR-RDNDLHYTSDQIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQ  159 (400)
Q Consensus        81 ~~-~~~g~~~~~e~I~it~G~~~~l~~~~~~~~~~Gd~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~  159 (400)
                      .. ..+.-.+..=+|++|+|.+++++.++..+||+||.|++..++|+.-.+..+..|+++++|++++++   +++|.|++
T Consensus       113 ~~~~ih~p~~~~wdiiit~G~t~~l~~~l~~~~N~gd~vlie~~ty~~AL~s~~a~gv~~ipv~md~~G---i~pE~l~~  189 (472)
T KOG0634         113 NRPTIHAPPYKNWDIIITNGNTDGLFKVLRTLINRGDHVLIEEYTYPSALQSMEALGVKIIPVKMDQDG---IDPESLEE  189 (472)
T ss_pred             CCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHCCCCCEEEECCCCHHHHHHCCCCCCEEEECCCCCCC---CCHHHHHH
T ss_conf             623142777788438980687217899999851678826874034367887331048457741456789---88799998


Q ss_pred             CCC---------CCCCCEE-ECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCC--------CC-----
Q ss_conf             012---------2122012-113542100001233332111223333320111012211000001--------22-----
Q gi|254780602|r  160 AIT---------PKTKWLF-LNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRN--------CQ-----  216 (400)
Q Consensus       160 ~i~---------~~~k~i~-l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~--------~~-----  216 (400)
                      .+.         ++++++| +.+-+||||..++.+++++|.++ ||+||++||+||+|..|-|+.        .+     
T Consensus       190 il~~w~~~~~k~~~p~vlYTIPTgqNPTG~tls~errk~iy~L-ArKyDfLIVeDdpYy~Lq~~~y~~~~~~~~p~~s~~  268 (472)
T KOG0634         190 ILSNWKPGSYKKPKPHVLYTIPTGQNPTGNTLSLERRKKIYQL-ARKYDFLIVEDDPYYFLQMNTYNPSLELESPAHSSS  268 (472)
T ss_pred             HHHCCCCCCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHH-HHHCCEEEEECCCCCEEECCCCCCCCCCCCCCCCHH
T ss_conf             9864885434689970799676888998874689999999999-987678999247631243366688766467552478


Q ss_pred             ------CCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC---
Q ss_conf             ------33222111233322574146544322344544422110122687531001222332222222222223467---
Q gi|254780602|r  217 ------FSNIVNVEPSLYERTLVVNGVSKAYAMTGLRIGYAAGALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGP---  287 (400)
Q Consensus       217 ------~~s~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~v~~~~li~~l~~~~~~~~~~~~~~~q~a~~~~l~~~---  287 (400)
                            .+++.+++.  ..|||...||||.++ ||+|+||+.+++.+++++.......+.+++.++|.+.-+.|...   
T Consensus       269 ~f~k~l~~sflslDt--dGrVIr~dSFSKiia-PGlRlG~it~~~~~l~ril~~ae~~t~~pSg~sq~iv~a~l~~wgqe  345 (472)
T KOG0634         269 MFLKSLVPSFLSLDT--DGRVIRNDSFSKIIA-PGLRLGWITGNSLFLKRILDLAEVATSGPSGFSQGIVYAMLKRWGQE  345 (472)
T ss_pred             HHHHHHCCCCCCCCC--CCCEEECCCHHHHHC-CCCEEEEEECCHHHHHHHHHHCCEEECCCCCCCHHHHHHHHHHHHHH
T ss_conf             898864477323666--661786341244416-76315786357778888861203100386641099999999998888


Q ss_pred             --CCCCCCCCCCCCCCCCCHHHHHHC-CCC--CEEEECCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEE
Q ss_conf             --643222222110000000245530-477--603302740899862641023321133224898999999998739799
Q gi|254780602|r  288 --QDFVVNNRKIFEYRRDLCVAQLQG-VPG--IRYMIPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAV  362 (400)
Q Consensus       288 --~~~~~~~~~~~~~~r~~~~~~L~~-~~g--~~~~~p~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v  362 (400)
                        .+|+.+.+..|..||+.+..+|.+ +|+  .++++|.||||+|++++ ...  ....+....-+++...++.+.||.+
T Consensus       346 G~~~wi~~l~~~Yt~Rrn~~l~Al~kylp~~~~~~~~P~aGmFiwv~i~-~~~--~~~~~~i~q~~e~i~~~~vk~gV~~  422 (472)
T KOG0634         346 GFLRWIQHLRSSYTERRNALLSALDKYLPKSVCEYHPPKAGMFIWVEIP-YIN--FDTKKSINQIEEIIFIKAVKNGVKL  422 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEEC-CCC--CCCCCCHHHHHHHHHHHHHHCCEEE
T ss_conf             8999999999999888999999999758777069866876469999926-643--4655666799999999999779189


Q ss_pred             ECCCCCCC------CC-EEEEEEE-CCHHHHHHHHHHHHHHHHH
Q ss_conf             83502289------97-2899962-9999999999999999986
Q gi|254780602|r  363 VQGSSFGH------GP-SIRISYA-VSDAILEEACVRIKRFCHS  398 (400)
Q Consensus       363 ~pG~~Fg~------~~-~iRis~~-~~~e~l~~al~rl~~~l~~  398 (400)
                      ++|+.|-.      .. ++|++|+ .+.|++++|++|+...|++
T Consensus       423 v~G~~F~v~p~~s~~kiffRls~a~a~~e~l~~g~~rf~~~ike  466 (472)
T KOG0634         423 VCGSWFMVDPESSWSKIFFRLSIAFAEPEKLDEGIERFGSVIKE  466 (472)
T ss_pred             ECCCEEEECCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHH
T ss_conf             33743687676577752599996208988999999999999998


No 98 
>PRK06425 histidinol-phosphate aminotransferase; Validated
Probab=100.00  E-value=0  Score=332.25  Aligned_cols=314  Identities=18%  Similarity=0.236  Sum_probs=237.6

Q ss_pred             CCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             97266565897498899999999999838875699877898999999998642101333322332334543333222222
Q gi|254780602|r   31 IDVLCLTAGEPDFDMPENVKYAVVRAMERGETKYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFNALMA  110 (400)
Q Consensus        31 ~~ii~l~~G~p~~~~p~~i~~a~~~al~~~~~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l~~~~~~  110 (400)
                      .++||||.+-..|...            .....||+.. ..+||++||+|+      .+++++|+++||+++.|..++. 
T Consensus        16 g~ilDfSsniNP~~~~------------~~l~rYPd~~-~~~Lr~~iA~~~------~v~~~~I~vgnGs~ElI~~l~~-   75 (332)
T PRK06425         16 GRIIDFSANINDFMDI------------GDISIYPEIS-YTDIEDQIKIYT------QGLKIKVLIGPGLTHFIYRLLS-   75 (332)
T ss_pred             CCCEEECCCCCCCCCC------------CHHHHCCCCC-HHHHHHHHHHHH------CCCHHHEEECCCHHHHHHHHHH-
T ss_conf             9988878877999983------------1564294998-699999999886------9686739982209999999999-


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf             23322322223333232222222222222222222223222103331000122122012113542100001233332111
Q gi|254780602|r  111 TVNMGDEVLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALA  190 (400)
Q Consensus       111 ~~~~Gd~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~k~i~l~nP~NPTG~v~s~~~l~~i~  190 (400)
                      .+.+| .++++.|+|..|...++..|++++.+|....+   .+++.++   +.+++++++||||||||++++++++++++
T Consensus        76 ~~~~~-~~~i~~PtF~~Y~~~a~~~g~~~~~vp~~~~~---~~~~~~~---~~~~~lv~i~nPNNPTG~~~~~~~l~~l~  148 (332)
T PRK06425         76 YINVG-NIIIVEPNFNEYKGYAFTHGIRISALPFNLIN---NNPEILN---NYNFDLIFIVSPDNPLGNLISRDSLLTIS  148 (332)
T ss_pred             HHCCC-CEEEECCCHHHHHHHHHHCCCEEEEECCCCCC---CCHHHHH---CCCCCEEEEECCCCCCCCCCCHHHHHHHH
T ss_conf             86899-98996888899999999869989995743332---5888884---58989899941817201348999999999


Q ss_pred             CCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf             22333332011101221100000122332221112333225741465443223445444221101226875310012223
Q gi|254780602|r  191 DVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTGLRIGYAAGALSLIKSMIVLQGQQTS  270 (400)
Q Consensus       191 ~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~v~~~~li~~l~~~~~~~~~  270 (400)
                      +.|. +++.+||.||+|.+|+-+.  ..+...+. ..++|+|+++||||.|++||+|+||+++++++++.+.+.+.  .+
T Consensus       149 ~~~~-~~~~~vvvDEAY~ef~~~~--~~~~~~l~-~~~~NliVlRSfSK~~gLaGlRlGY~i~~~~~i~~l~~~~~--p~  222 (332)
T PRK06425        149 EICR-KKGALLFIDEAFIDFVPNR--AEEDVLLN-RSYGNVIIGRSLTKILGIPSLRIGYIATDDYNMKISRKITE--PW  222 (332)
T ss_pred             HHCC-CCCCEEEEECHHHHHHCCC--CHHHHHHH-HCCCCEEEEEEHHHHHHCCCHHHEHHCCCHHHHHHHHHCCC--CC
T ss_conf             9605-2697999964135651466--34357776-40798899920078761641433331089999999997048--98


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCHHHH
Q ss_conf             32222222222223467643222222110000000245530477603302740899862641023321133224898999
Q gi|254780602|r  271 GACSIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQGVPGIRYMIPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDF  350 (400)
Q Consensus       271 ~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~~~~~L~~~~g~~~~~p~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~  350 (400)
                      +++.+.+.+ +.+++ .+.+.+..++..++.|+++.+.|+++ |+.+..+..++|+|++++              +..++
T Consensus       223 ~v~~~a~~~-~~a~~-~~~~~~~~~~~~~~~r~~l~~~L~~~-g~~~~~~~~aNFil~~~~--------------~a~~l  285 (332)
T PRK06425        223 SVCDPAIDF-IRSID-LDYVAKHSLDIMENERSYLINNLEAM-GFRAAGDPSANFITFMIP--------------DAHDF  285 (332)
T ss_pred             CCHHHHHHH-HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHC-CCEECCCCCCEEEEEECC--------------CHHHH
T ss_conf             738999999-99963-19999999999999999999999977-797889997048999679--------------99999


Q ss_pred             HHHHHHHCCEEEECCCCCCC--CCEEEEEEECCHHHHHHHHHHHHHHH
Q ss_conf             99999873979983502289--97289996299999999999999999
Q gi|254780602|r  351 VNGLLEIEKVAVVQGSSFGH--GPSIRISYAVSDAILEEACVRIKRFC  396 (400)
Q Consensus       351 ~~~Ll~~~gV~v~pG~~Fg~--~~~iRis~~~~~e~l~~al~rl~~~l  396 (400)
                      .++|+ ++||+|++++.|+.  ++|+||+.++++| -+.-++.|+++|
T Consensus       286 ~~~L~-~~gIlVR~~~~~~~l~~~~iRisvgt~~e-N~~ll~aLk~~L  331 (332)
T PRK06425        286 YSYLL-KNGILVRLLDDYECLGEQYIRIAIRRRSF-NIKLVNALRNFL  331 (332)
T ss_pred             HHHHH-HCCEEEEECCCCCCCCCCEEEEECCCHHH-HHHHHHHHHHHH
T ss_conf             99999-69919998899898899999997899999-999999999975


No 99 
>PRK05664 threonine-phosphate decarboxylase; Reviewed
Probab=100.00  E-value=0  Score=304.07  Aligned_cols=302  Identities=17%  Similarity=0.228  Sum_probs=231.5

Q ss_pred             CCEEECCCCCCCCCCC-HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             9726656589749889-999999999983887569987789899999999864210133332233233454333322222
Q gi|254780602|r   31 IDVLCLTAGEPDFDMP-ENVKYAVVRAMERGETKYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFNALM  109 (400)
Q Consensus        31 ~~ii~l~~G~p~~~~p-~~i~~a~~~al~~~~~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l~~~~~  109 (400)
                      .|||+||.+...+++| +.+..   +++    ..|++..  ..||+++++++    |.    ++|++++|++++|.++..
T Consensus        20 ~~iiDfSsNiNP~g~P~~~~~~---~~~----~ryP~~~--~~L~~a~a~~~----g~----~~vl~gnGs~e~I~ll~~   82 (330)
T PRK05664         20 ADWLDLSTGIAPWPWPVPPIPA---DAW----ARLPETD--DGLEAAARAYY----GA----PQLLPVAGSQAAIQALPR   82 (330)
T ss_pred             HHEEECCCCCCCCCCCHHHHHH---HHH----HHCCCCC--HHHHHHHHHHC----CC----CCEEEECCHHHHHHHHHH
T ss_conf             9915537888999998688889---999----8779996--89999999871----99----739994169999999999


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCC
Q ss_conf             22332232222333323222222222222222222222322210333100012212201211354210000123333211
Q gi|254780602|r  110 ATVNMGDEVLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRAL  189 (400)
Q Consensus       110 ~~~~~Gd~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~k~i~l~nP~NPTG~v~s~~~l~~i  189 (400)
                      .  .++++|+++.|+|..|...++..|.+++.++          .+++...+ ++.+++++||||||||.++++++++++
T Consensus        83 l--~~~~~v~i~~PtfseY~~a~~~~g~~v~~~~----------~~~~~~~~-~~~d~v~l~nPNNPTG~~~~~~~l~~~  149 (330)
T PRK05664         83 L--RAPGRVGVLSPCYAEHAHAWRRAGHQVRELD----------EAEVEAAL-DSLDVLVVVNPNNPTGRRFDPARLLAW  149 (330)
T ss_pred             H--HCCCEEEECCCCHHHHHHHHHHCCCEEEECC----------HHHHHHCC-CCCCEEEECCCCCCCCCCCCHHHHHHH
T ss_conf             7--4899468848887999999998699889768----------77776226-788989982792886689899999999


Q ss_pred             CCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCC
Q ss_conf             12233333201110122110000012233222111233322574146544322344544422110122687531001222
Q gi|254780602|r  190 ADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTGLRIGYAAGALSLIKSMIVLQGQQT  269 (400)
Q Consensus       190 ~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~v~~~~li~~l~~~~~~~~  269 (400)
                      ++.|.+ .+.++|.||+|.++.-+    .++.... . .+++++++||||.|++||+|+||+++++++++.+.+++.  .
T Consensus       150 ~~~~~~-~~~~lvvDEay~d~~~~----~s~~~~~-~-~~nlivlrS~sK~~glaGlRlGy~~a~~~~i~~l~~~~~--p  220 (330)
T PRK05664        150 HARLAA-RGGWLVVDEAFMDNTPQ----HSLAACA-H-RPGLIVLRSFGKFFGLAGARLGFVLAEPALLRALAELLG--P  220 (330)
T ss_pred             HHHHHH-CCCEEEEECHHHCCCCC----HHHHHHC-C-CCCEEEEEECCHHHCCCCCCCEEHCCCHHHHHHHHHHCC--C
T ss_conf             998653-19889997532116873----1146633-5-899899840447426854030201089999999998449--9


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCHHH
Q ss_conf             33222222222222346764322222211000000024553047760330274089986264102332113322489899
Q gi|254780602|r  270 SGACSIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQGVPGIRYMIPDGAFYLYPSCQDLIGKKSPSGDVIRTDLD  349 (400)
Q Consensus       270 ~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~~~~~L~~~~g~~~~~p~g~~y~~~~~~~~~~~~~~~~~~~~~~~~  349 (400)
                      .+++++.|.++..+|. +++|+.+.++...+.|+.+.+.|+.. |+++..+. +.|+++...              +..+
T Consensus       221 w~Vn~~a~~aa~aaL~-d~~~~~~~~~~l~~er~~l~~~L~~~-g~~~~~s~-anF~l~~~~--------------~a~~  283 (330)
T PRK05664        221 WTVSGPTRWLAQAALA-DTPWQRQQRERLLAASQRLAALLRRH-GLPPAGGC-ALFQWVRTE--------------DAAA  283 (330)
T ss_pred             CCCCHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHHHHHHHHC-CCEECCCC-CEEEEEECC--------------CHHH
T ss_conf             9860999999999963-99999999999999999999999978-88427995-369996259--------------9999


Q ss_pred             HHHHHHHHCCEEEECCCCCCCCCEEEEEEECCHHH---HHHHHHHH
Q ss_conf             99999987397998350228997289996299999---99999999
Q gi|254780602|r  350 FVNGLLEIEKVAVVQGSSFGHGPSIRISYAVSDAI---LEEACVRI  392 (400)
Q Consensus       350 ~~~~Ll~~~gV~v~pG~~Fg~~~~iRis~~~~~e~---l~~al~rl  392 (400)
                      +.+.|+ ++||+|..   |+..+++|+++..++++   |.+|+..+
T Consensus       284 l~~~L~-~~GIlVR~---~~~~~~LRi~i~~~e~~~~rL~~AL~~~  325 (330)
T PRK05664        284 LHEFLA-RRGILTRL---FEQPPSLRFGLPADEADWARLDQALLAY  325 (330)
T ss_pred             HHHHHH-HCCEEEEE---CCCCCCEEEECCCCHHHHHHHHHHHHHH
T ss_conf             999999-69949978---8999977985798878899999999999


No 100
>PRK06959 putative threonine-phosphate decarboxylase; Provisional
Probab=100.00  E-value=4.2e-45  Score=294.51  Aligned_cols=323  Identities=16%  Similarity=0.173  Sum_probs=235.4

Q ss_pred             HHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf             99999999986997266565897498899999999999838875699877898999999998642101333322332334
Q gi|254780602|r   19 AAQRVRDLRSKGIDVLCLTAGEPDFDMPENVKYAVVRAMERGETKYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGT   98 (400)
Q Consensus        19 ~~~~~~~~~~~g~~ii~l~~G~p~~~~p~~i~~a~~~al~~~~~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~e~I~it~   98 (400)
                      +.+.+++.--.-.++|+||.+...+++|.....+  +++    ..|++. + ..|+++++.+|    |. .++++|+.++
T Consensus        12 l~~~a~~~G~~~~~ilDlSsNiNPlG~P~~~~~a--~~~----~ryPd~-~-~~l~~~~a~~~----g~-~~~~~Vl~gn   78 (339)
T PRK06959         12 LHEAARRYGIPYDAWLDLSTGINPHGYPVPPVPA--DAW----RRLPDD-G-DGLAACAARYY----GA-PDAAHVLPVA   78 (339)
T ss_pred             HHHHHHHHCCCHHHEEECCCCCCCCCCCCCHHHH--HHH----HHCCCC-C-HHHHHHHHHHC----CC-CCHHHEEECC
T ss_conf             9999999694998957616888989999222249--999----858998-5-89999999981----99-9677099665


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEECCCCCCCC
Q ss_conf             54333322222223322322223333232222222222222222222223222103331000122122012113542100
Q gi|254780602|r   99 GAKHVIFNALMATVNMGDEVLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSG  178 (400)
Q Consensus        99 G~~~~l~~~~~~~~~~Gd~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~k~i~l~nP~NPTG  178 (400)
                      |+++.|..+. .++.+|+ ++++.|+|..|...+...|.++++++...        +    .+.+.++.+++||||||||
T Consensus        79 Gs~elI~~l~-~~l~~~~-v~i~~ptfseY~~a~~~~G~~v~~~~~~~--------~----~l~~~~~~v~l~nPNNPTG  144 (339)
T PRK06959         79 GSQAAIRALP-ALLPRGR-VGIAALAYSEYAPAFARHGHRVVPLDIAA--------D----TLPATLTHAIVVNPNNPTA  144 (339)
T ss_pred             CHHHHHHHHH-HHHCCCC-EEEECCCHHHHHHHHHHCCCEEEECCCCH--------H----HCCCCCCEEEEECCCCCCC
T ss_conf             7999999999-9828886-89945203677899998298555137334--------3----3735689899805807103


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf             00123333211122333332011101221100000122332221112333225741465443223445444221101226
Q gi|254780602|r  179 VVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTGLRIGYAAGALSLI  258 (400)
Q Consensus       179 ~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~v~~~~li  258 (400)
                      ..++.++++++++.|.++ +.++|.||+|.++.  +.  .++.... + .+++|+++||||.|+++|+|+||++++++++
T Consensus       145 ~~~~~~~l~~~~~~~~~~-~~~lvvDEAy~df~--~~--~s~~~~~-~-~~nlivlRS~sK~~gLaGlRlGy~~a~~~~i  217 (339)
T PRK06959        145 ERLPAARLLRWHAQLAAR-GGTLIVDEAFADTG--AH--ASLAAHT-H-RPGLVVLRSVGKFFGLAGVRAGFVLAAPALL  217 (339)
T ss_pred             CCCCHHHHHHHHHHCCCC-CCEEEEEHHHHHHC--CC--HHHHHHC-C-CCCEEEEEECCHHHCCCCCCEEEEECCHHHH
T ss_conf             888999999999855413-88899973444526--65--4557641-6-9998998415676458764636443799999


Q ss_pred             HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEECCCCEEEEEECCCCCCCCC
Q ss_conf             87531001222332222222222223467643222222110000000245530477603302740899862641023321
Q gi|254780602|r  259 KSMIVLQGQQTSGACSIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQGVPGIRYMIPDGAFYLYPSCQDLIGKKS  338 (400)
Q Consensus       259 ~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~~~~~L~~~~g~~~~~p~g~~y~~~~~~~~~~~~~  338 (400)
                      +++.+.+.  ..+++++.|.++.++|. +++|+++.+..+.+.|+.+.+.|+.. |+.+. + ...|+|...        
T Consensus       218 ~~l~~~~~--pw~v~~~a~~a~~aal~-d~~~~~~~~~~l~~~r~~L~~~L~~~-g~~~~-~-~~lF~~~~~--------  283 (339)
T PRK06959        218 AALRDALG--AWTVSGPARHAVRAAFA-DRAWQAAMRERLAADGARLAALLRAH-GFAVH-A-TPLFSWTDD--------  283 (339)
T ss_pred             HHHHHHCC--CCCCCHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCC-C-CEEEEEECC--------
T ss_conf             99995389--98977999999999963-99999999999999999999999977-99866-7-205898468--------


Q ss_pred             CCCCCCCCHHHHHHHHHHHCCEEEECCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHC
Q ss_conf             1332248989999999987397998350228997289996299999999999999999860
Q gi|254780602|r  339 PSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGHGPSIRISYAVSDAILEEACVRIKRFCHSL  399 (400)
Q Consensus       339 ~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~iRis~~~~~e~l~~al~rl~~~l~~l  399 (400)
                            .+..++.+.|+ ++||.|+   .|+.++++||++..++++.+.-++.|++.+..|
T Consensus       284 ------~~a~~~~~~L~-~~GIlVR---~f~~p~~LRi~vp~~e~e~~RL~~AL~e~l~~~  334 (339)
T PRK06959        284 ------PRAAALHAALA-ARGIWTR---YFAAPPSVRIGLPADEAEWQRLEDALAECVPTL  334 (339)
T ss_pred             ------CCHHHHHHHHH-HCCEEEE---ECCCCCCEEEECCCCHHHHHHHHHHHHHHHHHH
T ss_conf             ------89999999998-4992995---889999889867899999999999999999986


No 101
>TIGR01140 CobD L-threonine-O-3-phosphate decarboxylase, putative; InterPro: IPR005860    L-threonine-O-3-phosphate decarboxylase (CobD) was shown to decarboxylate L-threonine O-3-phosphate to yield (R)-1-amino-2-propanol O-2-phosphate, which is the precursor for the linkage between the nucleotide loop and the corrin ring in the biosynthesis of cobalamin . The molecule is a dimer where each subunit consists of a large and small domain . This family contains pyridoxal phosphate-binding class II aminotransferases closely related to histidinol-phosphate aminotransferase (HisC). ; GO: 0003824 catalytic activity, 0009236 cobalamin biosynthetic process.
Probab=100.00  E-value=7e-45  Score=293.28  Aligned_cols=332  Identities=23%  Similarity=0.334  Sum_probs=275.4

Q ss_pred             CCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             97266565897498899999999999838875699877898999999998642101333322332334543333222222
Q gi|254780602|r   31 IDVLCLTAGEPDFDMPENVKYAVVRAMERGETKYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFNALMA  110 (400)
Q Consensus        31 ~~ii~l~~G~p~~~~p~~i~~a~~~al~~~~~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l~~~~~~  110 (400)
                      .+++||+..-....+|-.++-++..+|+. .-+||+.+ ++.||+|+|++.      +++.+.|+-|||+.++|.++..+
T Consensus         5 ~~lLDFsAninPlgpP~S~~aa~~~aLd~-~~rYPD~d-Y~hlrqA~AdH~------q~~~dwvl~gnG~~e~i~la~~t   76 (349)
T TIGR01140         5 DDLLDFSANINPLGPPASVKAALAAALDA-LERYPDDD-YIHLRQALADHH------QVAADWVLAGNGELESIRLAAET   76 (349)
T ss_pred             CCCCCCCCCCCCCCCCCCHHHHHHHHHHH-HHCCCCCC-HHHHHHHHHHHH------CCCCCCEECCCCCHHHHHHHHHH
T ss_conf             43032434578888760204589874278-76088843-189999986541------25601254599727888998861


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCHHH----HHHCCCCCCCCCEEECCCCCCCCCCCCCC
Q ss_conf             233223222233332322222222222222--222222232221033----31000122122012113542100001233
Q gi|254780602|r  111 TVNMGDEVLIPRPYWVSYPDMVALCGGIPV--FVDTQQDDNFQVSPE----KLEQAITPKTKWLFLNSPSNPSGVVYSQN  184 (400)
Q Consensus       111 ~~~~Gd~Vlv~~P~y~~y~~~~~~~g~~~~--~v~~~~~~~~~~d~~----~l~~~i~~~~k~i~l~nP~NPTG~v~s~~  184 (400)
                      +..+||.++|+.|+|..|-...+..|+++.  ++.+++..+|...-|    ++-+++.+.-..+++||||||||..+.++
T Consensus        77 ~~~~Gd~~~V~~P~F~eYgR~~~~~Gae~~ti~w~~~~~~~W~~~~dPseiA~l~A~~s~h~~lilctPnNPtG~l~~r~  156 (349)
T TIGR01140        77 LVSRGDAVLVVAPAFAEYGRELELAGAELKTIRWSLDEADGWRVLRDPSEIALLDAVTSEHDLLILCTPNNPTGDLLERD  156 (349)
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCH
T ss_conf             47888757870887026799998569812234577316888745576456654126883313531117676989862247


Q ss_pred             CCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHH-HHHHHHH
Q ss_conf             332111223333320111012211000001223322211123332257414654432234454442211012-2687531
Q gi|254780602|r  185 RLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTGLRIGYAAGALS-LIKSMIV  263 (400)
Q Consensus       185 ~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~v~~~~-li~~l~~  263 (400)
                      ++++|++-| |.-|+-+|.||++-+|+-.|.+ +++..-..+ ..+++++.|++|.|++||+|+||+|+..+ .+.++..
T Consensus       157 ~l~A~a~rc-~~~N~~LllDEAF~dF~pPG~E-~~l~p~l~~-~P~~~vlRSLTKfy~lPGLRlGylva~~Da~la~~r~  233 (349)
T TIGR01140       157 ALRALADRC-KAVNIELLLDEAFLDFLPPGEE-TSLVPSLKD-TPNVVVLRSLTKFYALPGLRLGYLVAVDDALLARLRA  233 (349)
T ss_pred             HHHHHHHHH-HHHHHHHHHHHHHHCCCCCCCC-CCCCCHHHC-CCCEEEECCHHHHHCCHHHHHHHHHCCCHHHHHHHHH
T ss_conf             899999888-8740466665565157898644-343413326-8978997111554025024454555166178999997


Q ss_pred             HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEECCCCEEEEEECCCCCCCCCCCCCC
Q ss_conf             00122233222222222222346764322222211000000024553047760330274089986264102332113322
Q gi|254780602|r  264 LQGQQTSGACSIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQGVPGIRYMIPDGAFYLYPSCQDLIGKKSPSGDV  343 (400)
Q Consensus       264 ~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~~~~~L~~~~g~~~~~p~g~~y~~~~~~~~~~~~~~~~~~  343 (400)
                      .+.  ..+++.+...++..+|+ .++|....++.+.+.|..+.+.|.++|++.++++++.| +.+++.            
T Consensus       234 ~r~--pW~vnalAaaag~~al~-~sef~q~tw~wl~~erar~~qaL~~lP~l~v~Ps~anf-LLl~~~------------  297 (349)
T TIGR01140       234 ARR--PWSVNALAAAAGAAALR-DSEFRQETWRWLAEERARLRQALADLPLLDVYPSRANF-LLLKVE------------  297 (349)
T ss_pred             HCC--CCCCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC-EEEECC------------
T ss_conf             428--99877689999999876-67899999874366778999999717887558888761-145458------------


Q ss_pred             CCCHHHHHHHHHHHCCEEEECCCCCC-C-CCEEEEEEECCH--HHHHHHHH
Q ss_conf             48989999999987397998350228-9-972899962999--99999999
Q gi|254780602|r  344 IRTDLDFVNGLLEIEKVAVVQGSSFG-H-GPSIRISYAVSD--AILEEACV  390 (400)
Q Consensus       344 ~~~~~~~~~~Ll~~~gV~v~pG~~Fg-~-~~~iRis~~~~~--e~l~~al~  390 (400)
                       ..+.|+.++|+.+.+|.+..+..|- - ..|+|++.-+..  ++|-.|+.
T Consensus       298 -~~~~dl~~~llt~~~IliRdc~~fpgLds~~~RVAvRt~a~N~rLlaALa  347 (349)
T TIGR01140       298 -REDVDLQEELLTKERILIRDCLSFPGLDSDYYRVAVRTAAENDRLLAALA  347 (349)
T ss_pred             -CCCHHHHHHHHHHCCCCHHHCCCCCCCCCCEEEEEECCHHHHHHHHHHHH
T ss_conf             -98688999998743410012057888887527888528554789999961


No 102
>COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism]
Probab=100.00  E-value=5.4e-42  Score=275.85  Aligned_cols=359  Identities=21%  Similarity=0.356  Sum_probs=271.5

Q ss_pred             HHHHHHHHHHH-HHHCCCCEEECCCCCCCCCCCHHHHH----HHHHHHHCCC-----CCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             89999999999-99869972665658974988999999----9999983887-----56998778989999999986421
Q gi|254780602|r   15 ATLVAAQRVRD-LRSKGIDVLCLTAGEPDFDMPENVKY----AVVRAMERGE-----TKYTAVAGISPLREAIVEKFRRD   84 (400)
Q Consensus        15 ~~~~~~~~~~~-~~~~g~~ii~l~~G~p~~~~p~~i~~----a~~~al~~~~-----~~Y~~~~G~~~lR~aia~~~~~~   84 (400)
                      .+..+.....+ ++..|  .|.|+.|+|-. . |++.+    ...+.+.++.     ..|..++|...|-+++++.++++
T Consensus        15 Gi~~lMdDl~d~Lrt~g--~imLggGNPa~-i-Pem~~~f~~~~aemla~~~~~e~~cnY~~pQG~~~li~ala~~l~~~   90 (417)
T COG3977          15 GITQLMDDLNDGLRTPG--AIMLGGGNPAR-I-PEMDDYFQDLLAEMLASGKATEALCNYDGPQGKAVLIDALAKMLRRE   90 (417)
T ss_pred             HHHHHHHHHHHHCCCCC--CEEECCCCCCC-C-HHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
T ss_conf             09999998876515887--15656998543-7-34999999999999855607778754899764169999999999897


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCC---CCCC--CCCCC-CCCCCCCCCCCCC----CCCCCCCCCCCCCCC--CCC
Q ss_conf             0133332233233454333322222223---3223--22223-3332322222222----222222222222232--221
Q gi|254780602|r   85 NDLHYTSDQIIVGTGAKHVIFNALMATV---NMGD--EVLIP-RPYWVSYPDMVAL----CGGIPVFVDTQQDDN--FQV  152 (400)
Q Consensus        85 ~g~~~~~e~I~it~G~~~~l~~~~~~~~---~~Gd--~Vlv~-~P~y~~y~~~~~~----~g~~~~~v~~~~~~~--~~~  152 (400)
                      +||+++++||.+|||++.+.+-++..+.   ..|+  +|++| .|.|..|..+.-.    .-++|- +.+.+++.  |++
T Consensus        91 yGwnit~~NIalTnGSQs~fFYlfNlF~G~~sdG~~k~illPLaPeYiGY~d~~l~~d~fVs~kP~-iel~~~g~FKY~v  169 (417)
T COG3977          91 YGWNITAQNIALTNGSQSAFFYLFNLFAGRRSDGTEKKILLPLAPEYIGYADAGLEEDLFVSAKPN-IELLPAGQFKYHV  169 (417)
T ss_pred             HCCCCCCCEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEECCCHHHCCCCCCCCCCCCEEECCCC-CCCCCCCCEEECC
T ss_conf             578766441563278611588998875476679851046643683432655446572123552687-5326666622137


Q ss_pred             HHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCC--CCCCCCCCE
Q ss_conf             033310001221220121135421000012333321112233333201110122110000012233222--111233322
Q gi|254780602|r  153 SPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIV--NVEPSLYER  230 (400)
Q Consensus       153 d~~~l~~~i~~~~k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~--~~~~~~~~~  230 (400)
                      |++.+.  +.+.+.+|+++-|.||||.|++.+|+.+|..+ +++|++.+|.|.+|.      .+|+.+-  ...+-+.+|
T Consensus       170 DF~~l~--i~e~~g~ic~SRPtNPTGNVlTdeE~~kldal-A~~~giPliIDnAYg------~PFP~iifsd~~~~w~~N  240 (417)
T COG3977         170 DFEHLH--IGESTGAICVSRPTNPTGNVLTDEELAKLDAL-ARQHGIPLIIDNAYG------VPFPGIIFSDATPLWNEN  240 (417)
T ss_pred             CHHHHC--CCCCEEEEEECCCCCCCCCCCCHHHHHHHHHH-HHHCCCCEEEECCCC------CCCCCEECCCCCCCCCCC
T ss_conf             788813--36760269964788988773648899989987-422389679735667------997862003564156787


Q ss_pred             EEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC--CCC-CCCCCCCCCCCCCHHH
Q ss_conf             5741465443223445444221101226875310012223322222222222234676--432-2222211000000024
Q gi|254780602|r  231 TLVVNGVSKAYAMTGLRIGYAAGALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGPQ--DFV-VNNRKIFEYRRDLCVA  307 (400)
Q Consensus       231 ~i~~~S~SK~~~~~G~RiG~~v~~~~li~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~--~~~-~~~~~~~~~~r~~~~~  307 (400)
                      +|.+.|+||. ++||.|+|.++++++++..+..+.......+....+..++.+++.++  ..- +-.|-.|+++.+...+
T Consensus       241 iilC~SLSK~-GLPG~R~GIiIane~viqaitnmn~iisLap~~~G~Aiaa~mie~gdl~rlseqVIrPFY~~~~q~~~~  319 (417)
T COG3977         241 IILCMSLSKL-GLPGSRCGIIIANEKVIQAITNMNGIISLAPGRMGPAIAAEMIESGDLLRLSEQVIRPFYRNRVQTTIA  319 (417)
T ss_pred             EEEEEEHHHC-CCCCCEEEEEECCHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             7888314334-898730357962699999997114535316787568999988602428889998643888988999999


Q ss_pred             HHHC-CCC--CEEEECCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCC--C-------CEEE
Q ss_conf             5530-477--60330274089986264102332113322489899999999873979983502289--9-------7289
Q gi|254780602|r  308 QLQG-VPG--IRYMIPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGH--G-------PSIR  375 (400)
Q Consensus       308 ~L~~-~~g--~~~~~p~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~--~-------~~iR  375 (400)
                      .|+. ++-  +.+++|+|+.|+|+-+.++          ..+++++.++| ++.||+++||+.|-.  +       ..+|
T Consensus       320 ~l~~~lp~~~~~iHkpEGAIFlWLWf~dL----------PItt~~LYq~L-Ka~Gvl~VPG~~FFpGl~~ewpH~hqC~R  388 (417)
T COG3977         320 ILRRYLPEYRCLIHKPEGAIFLWLWFKDL----------PITTEELYQRL-KARGVLMVPGHYFFPGLDKEWPHTHQCMR  388 (417)
T ss_pred             HHHHHCCCCCEEEECCCCCEEEHHHHCCC----------CCCHHHHHHHH-HHCEEEEECCCCCCCCCCCCCCCCCCEEE
T ss_conf             99986577652542687515413355358----------76689999999-86868994463247899988876122478


Q ss_pred             EEEECCHHHHHHHHHHHHHHHHHC
Q ss_conf             996299999999999999999860
Q gi|254780602|r  376 ISYAVSDAILEEACVRIKRFCHSL  399 (400)
Q Consensus       376 is~~~~~e~l~~al~rl~~~l~~l  399 (400)
                      ++++.++++++.++++|++.++++
T Consensus       389 mn~~~~~e~ie~Gva~lae~ve~~  412 (417)
T COG3977         389 MNYVPEPEKIEKGVAILAEEVERA  412 (417)
T ss_pred             EECCCCHHHHHHHHHHHHHHHHHH
T ss_conf             753698799999999999999999


No 103
>PRK09275 aspartate aminotransferase; Provisional
Probab=100.00  E-value=3.7e-41  Score=270.74  Aligned_cols=329  Identities=22%  Similarity=0.305  Sum_probs=237.9

Q ss_pred             CCCCCCCCHHHHHHHHHHH-HHH-CCCCC--CCCCCCCCCCCCCCCCCCCCCC-----CCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             6998778989999999986-421-01333--3223323345433332222222-----3322322223333232222222
Q gi|254780602|r   63 KYTAVAGISPLREAIVEKF-RRD-NDLHY--TSDQIIVGTGAKHVIFNALMAT-----VNMGDEVLIPRPYWVSYPDMVA  133 (400)
Q Consensus        63 ~Y~~~~G~~~lR~aia~~~-~~~-~g~~~--~~e~I~it~G~~~~l~~~~~~~-----~~~Gd~Vlv~~P~y~~y~~~~~  133 (400)
                      .||.+.-....-|.|.+.| .+. +|-.-  ..=+++.|-|++.||.-+|..+     +++||+|.+..|.|.+|..+.+
T Consensus       133 nYPvP~RmL~~~E~Iv~~YL~~em~~~~~~~~~fdlFatEGgTAAM~YiF~sL~~N~LL~~GDkIAi~~PIFTPYlEIP~  212 (531)
T PRK09275        133 NYPVPDRMLVHTEKIVKDYLRQEMCGNRPPPGEFDLFAVEGGTAAMCYIFDSLKENGLLKAGDKIALMTPIFTPYLEIPE  212 (531)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCC
T ss_conf             89996788898999999999999628999988731674167205799999999975887889878995677776301677


Q ss_pred             C--CCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCC-CCCCEEECCCCCCCC
Q ss_conf             2--2222222222222322210333100012212201211354210000123333211122333-332011101221100
Q gi|254780602|r  134 L--CGGIPVFVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVR-NPHVHIISDDIYEHI  210 (400)
Q Consensus       134 ~--~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~-~~~i~ii~De~Y~~l  210 (400)
                      +  .+.+++.+..+++++|+..-++|+++-+|+.|+++++||+||++..++.+.+++|.++... +.|+.||.||+|+.|
T Consensus       213 L~~Y~l~vV~i~a~~~~~WQy~d~EleKL~DP~IKAlf~VNPsNP~S~~ls~e~l~~i~~IV~~~nPdLmIiTDDVYgTF  292 (531)
T PRK09275        213 LPDYDLEVVHISADEKNEWQYPDKELEKLRDPSIKALFVVNPSNPPSVAMSDESLEKIADIVKEDRPDLMIITDDVYGTF  292 (531)
T ss_pred             CCCCCCEEEEEECCCCCCCCCCHHHHHHHCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCC
T ss_conf             66678628998556545887798999874497711899989999866656999999999999742998799954653226


Q ss_pred             CCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHH-----HHHHH--------HH--------------
Q ss_conf             0001223322211123332257414654432234454442211012-----26875--------31--------------
Q gi|254780602|r  211 VYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTGLRIGYAAGALS-----LIKSM--------IV--------------  263 (400)
Q Consensus       211 ~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~v~~~~-----li~~l--------~~--------------  263 (400)
                      +.   .+.|+.+..   +.|||.++||||.||++|||+|++..+++     +|+.+        .+              
T Consensus       293 ~~---~F~Sl~a~~---P~NTi~VYSfSKyFGaTGWRLG~Ialh~~NvfD~~i~~Lp~~~k~~L~~RY~~lt~~P~~lkF  366 (531)
T PRK09275        293 VD---DFRSLFAEL---PYNTLLVYSFSKYFGATGWRLGVIALHEDNVFDKLIAELPEEKKKELDKRYSSLTTEPEKLKF  366 (531)
T ss_pred             CC---CCEEHHHHC---CCCEEEEEEEHHCCCCCCCCCEEEEECCCCCHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCH
T ss_conf             45---646365648---875478886310058844110344541033077999866887899999877554688233540


Q ss_pred             ----------HCCCCCCCCCCCCCCCCC-----CCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEECCCCEEEEE
Q ss_conf             ----------001222332222222222-----22346764322222211000000024553047760330274089986
Q gi|254780602|r  264 ----------LQGQQTSGACSIAQWAAV-----EALNGPQDFVVNNRKIFEYRRDLCVAQLQGVPGIRYMIPDGAFYLYP  328 (400)
Q Consensus       264 ----------~~~~~~~~~~~~~q~a~~-----~~l~~~~~~~~~~~~~~~~~r~~~~~~L~~~~g~~~~~p~g~~y~~~  328 (400)
                                +.-+.+.|.|+|-|..+.     ..+++.+.|....++.+++|.+.+++.|. ++ ....+-.++||.-+
T Consensus       367 IDRlVADSR~VALnHTAGLStPQQvqM~LFsl~~L~d~~~~Yk~~~~~ii~~R~~~L~~~lg-~~-~~~~~~~~~YYt~i  444 (531)
T PRK09275        367 IDRLVADSRQVALNHTAGLSTPQQVQMALFSLFSLLDEEDAYKKAMKDIIRRRYKALYEGLG-LP-EPEDPNNAAYYTLI  444 (531)
T ss_pred             HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCC-CC-CCCCCCCCCEEEEE
T ss_conf             67765217888876603788099999999999986277338999999999999999998549-99-88898765524566


Q ss_pred             ECCCCCCCCCC-----CCCCCCCHHHHHHHHHHHCCEEEECCCCCCCC-CEEEEEEE-CCHHHHHHHHHHHHHHHHHC
Q ss_conf             26410233211-----33224898999999998739799835022899-72899962-99999999999999999860
Q gi|254780602|r  329 SCQDLIGKKSP-----SGDVIRTDLDFVNGLLEIEKVAVVQGSSFGHG-PSIRISYA-VSDAILEEACVRIKRFCHSL  399 (400)
Q Consensus       329 ~~~~~~~~~~~-----~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~-~~iRis~~-~~~e~l~~al~rl~~~l~~l  399 (400)
                      |+........-     ......+..+|.-+|++++||++.||.+||.+ ..+|+|++ .++++..+.-+.|.+.++.+
T Consensus       445 dl~~~a~~~yg~~F~~~l~~~~~p~d~lfrLA~e~~vVLl~G~GF~~p~ws~RVSLANL~~~dY~~IG~~i~~~l~eY  522 (531)
T PRK09275        445 DLEEWAEKNYGKEFAEYLKKNYSPLDLLFRLAEETGIVLLPGGGFGGPEWSLRVSLANLNEEDYAKIGKSIRKLLDEY  522 (531)
T ss_pred             EHHHHHHHHHCHHHHHHHHHHCCHHHHHHHHHHHCCEEEECCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHH
T ss_conf             099999987678999999972888889999998737899558877999862588736899889999999999999999


No 104
>KOG0633 consensus
Probab=100.00  E-value=2.4e-35  Score=235.33  Aligned_cols=331  Identities=21%  Similarity=0.272  Sum_probs=248.4

Q ss_pred             HCCCCEEECCCCCC-CCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             86997266565897-49889999999999983887569987789899999999864210133332233233454333322
Q gi|254780602|r   28 SKGIDVLCLTAGEP-DFDMPENVKYAVVRAMERGETKYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFN  106 (400)
Q Consensus        28 ~~g~~ii~l~~G~p-~~~~p~~i~~a~~~al~~~~~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l~~  106 (400)
                      +.|.+++.+...+. -.|.|.. .|        =.+.|++.+ ..+|+.+.+.-      -+.++|+|+++.|+.+.|.+
T Consensus        38 a~G~~iv~ld~~e~~ryPdP~q-~e--------fk~~~~d~r-nk~ls~a~~~d------kpLt~dnic~GvGsDE~ID~  101 (375)
T KOG0633          38 ALGRDIVKLDANENPRYPDPEQ-ME--------FKYVYPDPR-NKRLSDALAQD------KPLTSDNICVGVGSDELIDL  101 (375)
T ss_pred             HCCCCCEEECCCCCCCCCCHHH-CC--------CCCCCCCCC-CCHHHHHCCCC------CCCCCCCEEEECCCHHHHHH
T ss_conf             4099736753655789968787-00--------330147834-21112211668------99872446772172888988


Q ss_pred             CCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCC--CCCCCEEECCCCCCCCCCCCC
Q ss_conf             222223322-32222333323222222222222222222222322210333100012--212201211354210000123
Q gi|254780602|r  107 ALMATVNMG-DEVLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQAIT--PKTKWLFLNSPSNPSGVVYSQ  183 (400)
Q Consensus       107 ~~~~~~~~G-d~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~--~~~k~i~l~nP~NPTG~v~s~  183 (400)
                      ++++.|.|| ++|+.--|+|..|.-.+...++.++.+|+.+  +|.++.|.+.+.+.  .+.|.+++++|+||||+.++.
T Consensus       102 iiR~~c~PGkeKIl~cPPtysMY~v~A~iNd~eVvkvpl~p--dF~lnvdai~evl~~ds~iK~~F~tSPgNPtg~~ik~  179 (375)
T KOG0633         102 IIRCVCDPGKEKILDCPPTYSMYVVDAAINDAEVVKVPLNP--DFSLNVDAIAEVLELDSKIKCIFLTSPGNPTGSIIKE  179 (375)
T ss_pred             HHHHEECCCCCCEEECCCCCEEEEEEEECCCCEEEEECCCC--CCCCCHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCH
T ss_conf             78100058843036569854058997403773479803788--7555699999998326643289981798987330338


Q ss_pred             CCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             33321112233333201110122110000012233222111233322574146544322344544422110122687531
Q gi|254780602|r  184 NRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTGLRIGYAAGALSLIKSMIV  263 (400)
Q Consensus       184 ~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~v~~~~li~~l~~  263 (400)
                      +.+.+|.+.- .  +.+++.||+|-+|.-++    |-+.+... ++|.+++.+|||+||++|+|+||...+.++++-+.+
T Consensus       180 ~di~KiLe~p-~--nglVVvDEAYidFsg~~----S~~~lV~k-YpNLivlqTlSKsfGLAGiRvG~~~~~~~ia~iln~  251 (375)
T KOG0633         180 DDILKILEMP-D--NGLVVVDEAYIDFSGVE----SRMKLVKK-YPNLIVLQTLSKSFGLAGIRVGYGAFPLSIAEILNR  251 (375)
T ss_pred             HHHHHHHHCC-C--CCEEEEEEEEEEECCCC----CCCHHHHH-CCCEEEHHHHHHHCCCCEEEEECCCCCHHHHHHHHH
T ss_conf             8999998298-8--83799750027602540----02457674-886522545555417532675033352789999986


Q ss_pred             HCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCHHHHHHCCCCCE-EEECCCCEEEEEECCCCCCCCCCCC
Q ss_conf             001222332222222222223467-64322222211000000024553047760-3302740899862641023321133
Q gi|254780602|r  264 LQGQQTSGACSIAQWAAVEALNGP-QDFVVNNRKIFEYRRDLCVAQLQGVPGIR-YMIPDGAFYLYPSCQDLIGKKSPSG  341 (400)
Q Consensus       264 ~~~~~~~~~~~~~q~a~~~~l~~~-~~~~~~~~~~~~~~r~~~~~~L~~~~g~~-~~~p~g~~y~~~~~~~~~~~~~~~~  341 (400)
                      ++.  ..+.+.+.-.++++++... -.+++..|+...+.|.++.+.|.+++++. ++-+--+-|+.+.+.+-.+      
T Consensus       252 ~Ka--PYNiS~~~s~~AL~Als~~n~kkme~~rdaiv~er~RL~keLt~v~~~~~~~gg~daNFiLi~v~~~~n------  323 (375)
T KOG0633         252 AKA--PYNISVAGSVAALAALSDSNGKKMEDVRDAIVRERERLFKELTEVPFLNDYPGGSDANFILIEVTGGDN------  323 (375)
T ss_pred             CCC--CCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCC------
T ss_conf             228--852162457999986180112278999999999999998776327654577786666579999707873------


Q ss_pred             CCCCCHHHHHHHHHHHCCEEEEC-CCCCCCCCEEEEEEECCHHHHHHHHHHHHHHH
Q ss_conf             22489899999999873979983-50228997289996299999999999999999
Q gi|254780602|r  342 DVIRTDLDFVNGLLEIEKVAVVQ-GSSFGHGPSIRISYAVSDAILEEACVRIKRFC  396 (400)
Q Consensus       342 ~~~~~~~~~~~~Ll~~~gV~v~p-G~~Fg~~~~iRis~~~~~e~l~~al~rl~~~l  396 (400)
                         .-+..+..+++.++||.|.- |+.-|..|++||+.++++|+-. -++-||.|+
T Consensus       324 ---~~akkly~q~at~~gVvVRfrgse~~c~G~lRitvGt~Eentv-L~k~~K~~l  375 (375)
T KOG0633         324 ---GMAKKLYKQDATKMGVVVRFRGSEEGCKGYLRITVGTPEENTV-LMKCLKQFL  375 (375)
T ss_pred             ---HHHHHHHHHHHHHCCEEEEECCCCCCCCEEEEEECCCCCCCHH-HHHHHHHHC
T ss_conf             ---7889999998875666999717850465008997178642208-999998659


No 105
>PRK09257 aromatic amino acid aminotransferase; Provisional
Probab=100.00  E-value=2.3e-34  Score=229.34  Aligned_cols=356  Identities=15%  Similarity=0.158  Sum_probs=245.9

Q ss_pred             HHHHCCCCHHHHHHHHHHHHHHCCCCEEECCCCC---CC--CCCCHHHHHHHHHHHHCCC-CCCCCCCCCHHHHHHHHHH
Q ss_conf             9873897589999999999998699726656589---74--9889999999999983887-5699877898999999998
Q gi|254780602|r    7 ILRRVQPSATLVAAQRVRDLRSKGIDVLCLTAGE---PD--FDMPENVKYAVVRAMERGE-TKYTAVAGISPLREAIVEK   80 (400)
Q Consensus         7 ~~~~l~~s~~~~~~~~~~~~~~~g~~ii~l~~G~---p~--~~~p~~i~~a~~~al~~~~-~~Y~~~~G~~~lR~aia~~   80 (400)
                      .+....|-+++.+.+..++-....+  |||++|-   -+  -+..+.|++|-...+++.. ..|.|..|.+++++++.+.
T Consensus         4 ~l~~~p~Dpil~l~~~f~~D~~p~K--vnLgvGvYrde~G~~~vl~aVk~Ae~~l~~~~~~k~Ylpi~G~~~f~~~~~~L   81 (397)
T PRK09257          4 HLEAAPADPILGLMEAFRADPRPDK--VNLGVGVYKDEQGRTPVLRAVKKAEARLLETETTKSYLPIEGLAAYNQAVQEL   81 (397)
T ss_pred             CCCCCCCCHHHHHHHHHHCCCCCCC--EEEEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf             6777899857799999822999674--77302378999989166579999999997378998787978779999999998


Q ss_pred             HHHHCCCC---CCCCCCC--CCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf             64210133---3322332--3345433332222222--332232222333323222222222222222222222322210
Q gi|254780602|r   81 FRRDNDLH---YTSDQII--VGTGAKHVIFNALMAT--VNMGDEVLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNFQVS  153 (400)
Q Consensus        81 ~~~~~g~~---~~~e~I~--it~G~~~~l~~~~~~~--~~~Gd~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~~~~~~~d  153 (400)
                      +   +|-+   +..++|.  -|.|++.||.+....+  ..|+.+|.+++|+|++|..+++.+|.++..+|.-....-.+|
T Consensus        82 ~---fG~~~~~~~~~rv~~vQt~gGTGAlrl~a~fl~~~~p~~~v~is~PtW~Nh~~If~~aGl~v~~Y~y~d~~t~~ld  158 (397)
T PRK09257         82 L---FGADSPAIAAGRVATVQTPGGTGALRVGADFLKRAFPDAKVWVSDPTWPNHRAIFEAAGLEVKTYPYYDAATKGLD  158 (397)
T ss_pred             H---CCCCCHHHHHCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCEEEEEEEECCCCCCCC
T ss_conf             4---2787556662525888547753689999999998589986997699962038999977980577655645457628


Q ss_pred             HHHHHCCCCC--CCCCEEECCC-CCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCC--CCCCCCCCCCCC
Q ss_conf             3331000122--1220121135-4210000123333211122333332011101221100000122--332221112333
Q gi|254780602|r  154 PEKLEQAITP--KTKWLFLNSP-SNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQ--FSNIVNVEPSLY  228 (400)
Q Consensus       154 ~~~l~~~i~~--~~k~i~l~nP-~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~--~~s~~~~~~~~~  228 (400)
                      ++.+.+.+..  .-.+|+|..+ |||||.-.+.++|++|++++.+ .+++.+.|-+|..|.- |..  ...+-.+. +..
T Consensus       159 f~~~~~~L~~a~~gsvvlLh~ccHNPTG~D~t~eqW~~ia~~~~~-k~l~p~~D~AYqGf~s-Gl~~Da~~iR~f~-~~~  235 (397)
T PRK09257        159 FDGMLADLSQAPAGDVVLLHGCCHNPTGADLTPEQWDEVAELLKE-RGLIPFLDIAYQGFGD-GLEEDAYGLRLFA-AAG  235 (397)
T ss_pred             HHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHH-CCCEEEEEHHCCCCCC-CHHHHHHHHHHHH-HHC
T ss_conf             999999998289999899725667988999899999999999996-6986888400143346-6899999999999-728


Q ss_pred             CEEEEECCCCCCCCCCCCCCCCCCC---HHHH----HHHHHHHCCCCCCCCCCCCCCCCCCCCCCC---CCC---CCCCC
Q ss_conf             2257414654432234454442211---0122----687531001222332222222222223467---643---22222
Q gi|254780602|r  229 ERTLVVNGVSKAYAMTGLRIGYAAG---ALSL----IKSMIVLQGQQTSGACSIAQWAAVEALNGP---QDF---VVNNR  295 (400)
Q Consensus       229 ~~~i~~~S~SK~~~~~G~RiG~~v~---~~~l----i~~l~~~~~~~~~~~~~~~q~a~~~~l~~~---~~~---~~~~~  295 (400)
                      ...++..||||+|++.|.|+|.++.   +++.    ..++..+.-...+++|...+.++...|+++   .+|   +..++
T Consensus       236 ~e~lva~SfSKnfgLY~eRvG~l~vv~~~~~~~~~v~s~l~~~~R~~~S~PP~hGA~iv~~IL~d~~L~~~W~~El~~m~  315 (397)
T PRK09257        236 LELLVASSFSKNFGLYGERVGALSVVAEDAEEAARVLSQLKATIRTNYSNPPAHGAAIVATILNDPELRAEWEQELAEMR  315 (397)
T ss_pred             CCEEEEEECCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_conf             85799840375433346775038998188889999999999999734588983899999999679999999999999999


Q ss_pred             CCCCCCCCCHHHHHHCCC---CCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCCCC
Q ss_conf             211000000024553047---76033027408998626410233211332248989999999987397998350228997
Q gi|254780602|r  296 KIFEYRRDLCVAQLQGVP---GIRYMIPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGHGP  372 (400)
Q Consensus       296 ~~~~~~r~~~~~~L~~~~---g~~~~~p~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~  372 (400)
                      ++.+..|+.+.+.|++..   .+..+.-|.|||.|.-++               . +-+.+|-++++|.++++       
T Consensus       316 ~Ri~~~R~~L~~~L~~~~~~~~w~~i~~q~GmFs~~gls---------------~-~qv~~Lr~~~~IYl~~~-------  372 (397)
T PRK09257        316 DRIKAMRQLLVEALKAKGPDRDFSFILRQRGMFSYSGLT---------------P-EQVDRLREEFGIYAVGS-------  372 (397)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCEEECCCCC---------------H-HHHHHHHHHCCEEECCC-------
T ss_conf             999999999999999758999962675076605668979---------------9-99999998472514699-------


Q ss_pred             EEEEEEE-CCHHHHHHHHHHHHH
Q ss_conf             2899962-999999999999999
Q gi|254780602|r  373 SIRISYA-VSDAILEEACVRIKR  394 (400)
Q Consensus       373 ~iRis~~-~~~e~l~~al~rl~~  394 (400)
                       -||+++ .++.+++--.+.|.+
T Consensus       373 -GRIniaGLn~~ni~~vA~AI~~  394 (397)
T PRK09257        373 -GRINVAGLNEDNIDYVAKAIAA  394 (397)
T ss_pred             -CEEEEECCCHHHHHHHHHHHHH
T ss_conf             -5689820776638999999999


No 106
>COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=99.97  E-value=5.3e-32  Score=214.98  Aligned_cols=357  Identities=15%  Similarity=0.178  Sum_probs=246.7

Q ss_pred             HHHHHCCCCHHHHHHHHHHHHHHCCCCEEECCCCC---CC--CCCCHHHHHHHHHHHHCCC-CCCCCCCCCHHHHHHHHH
Q ss_conf             89873897589999999999998699726656589---74--9889999999999983887-569987789899999999
Q gi|254780602|r    6 NILRRVQPSATLVAAQRVRDLRSKGIDVLCLTAGE---PD--FDMPENVKYAVVRAMERGE-TKYTAVAGISPLREAIVE   79 (400)
Q Consensus         6 ~~~~~l~~s~~~~~~~~~~~~~~~g~~ii~l~~G~---p~--~~~p~~i~~a~~~al~~~~-~~Y~~~~G~~~lR~aia~   79 (400)
                      +++....+-|++.+.+..++-.+.  +-|||++|-   .+  .|.-+.|++|-+..+++.. ..|.+..|.+++++++++
T Consensus         3 ~~i~~~p~DpIlgL~e~f~~D~R~--~KVNLgIGvY~de~Gk~pvl~aV~~Ae~~l~~~~~~k~Yl~i~G~~~f~~~~~~   80 (396)
T COG1448           3 EKIEAAPADPILGLKEAFKADPRP--NKVNLGIGVYKDEDGKTPVLRAVKKAEKRLLEQEKTKNYLPIEGLPEFLEAVQK   80 (396)
T ss_pred             CCCCCCCCCCHHHHHHHHHCCCCC--CEEEEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf             445668997044799997427986--705500566667989861218999999974026566555786770889999999


Q ss_pred             HHHHHCCCC---CCCCCCC--CCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             864210133---3322332--3345433332222222--33223222233332322222222222222222222232221
Q gi|254780602|r   80 KFRRDNDLH---YTSDQII--VGTGAKHVIFNALMAT--VNMGDEVLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNFQV  152 (400)
Q Consensus        80 ~~~~~~g~~---~~~e~I~--it~G~~~~l~~~~~~~--~~~Gd~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~~~~~~~  152 (400)
                      .+   +|-+   ++.++|.  -|.|++.||.++..-+  .-|...|.+++|+|++|..++..+|.++..||.-...+-.+
T Consensus        81 ll---FG~d~~~l~~~Rv~t~Qt~GGTGAL~~~A~fl~~~~~~~~vwis~PtW~NH~~If~~aGl~v~~Y~Yyd~~~~~~  157 (396)
T COG1448          81 LL---FGADSPALAEDRVATVQTLGGTGALRVAADFLARFFPDATVWISDPTWPNHKAIFEAAGLEVETYPYYDAETKGL  157 (396)
T ss_pred             HH---CCCCCHHHHHHHHHHEECCCCCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCEEEEECCCCCCCCC
T ss_conf             96---489817777655763006776128999999999848886288479982758999996698145310354666642


Q ss_pred             HHHHHHCCCCC--CCCCEEECCC-CCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCC-CCCCCCCCCCCC
Q ss_conf             03331000122--1220121135-4210000123333211122333332011101221100000122-332221112333
Q gi|254780602|r  153 SPEKLEQAITP--KTKWLFLNSP-SNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQ-FSNIVNVEPSLY  228 (400)
Q Consensus       153 d~~~l~~~i~~--~~k~i~l~nP-~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~-~~s~~~~~~~~~  228 (400)
                      |++.+-+.++.  ...+++|.-+ |||||.-++.++|++|+++. ++.+++.+.|-+|..|.-+-.+ ...+-.+.... 
T Consensus       158 df~~mla~L~~a~~~~vvLLH~CcHNPTG~D~t~~qW~~l~~~~-~~r~lip~~D~AYQGF~~GleeDa~~lR~~a~~~-  235 (396)
T COG1448         158 DFDGMLADLKTAPEGSVVLLHGCCHNPTGIDPTEEQWQELADLI-KERGLIPFFDIAYQGFADGLEEDAYALRLFAEVG-  235 (396)
T ss_pred             CHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHH-HHCCCEEEEEHHHHHHCCCHHHHHHHHHHHHHHC-
T ss_conf             57999999973789988998367789889999999999999999-9769823663244442124677899999999729-


Q ss_pred             CEEEEECCCCCCCCCCCCCCCCCCC---HHHHH----HHHHHHCCCCCCCCCCCCCCCCCCCCCCCC---CC---CCCCC
Q ss_conf             2257414654432234454442211---01226----875310012223322222222222234676---43---22222
Q gi|254780602|r  229 ERTLVVNGVSKAYAMTGLRIGYAAG---ALSLI----KSMIVLQGQQTSGACSIAQWAAVEALNGPQ---DF---VVNNR  295 (400)
Q Consensus       229 ~~~i~~~S~SK~~~~~G~RiG~~v~---~~~li----~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~---~~---~~~~~  295 (400)
                      ...++.+||||+|++.|.|+|....   +++..    .++....-...++||......+...|+.++   .|   +..+|
T Consensus       236 ~~~lva~S~SKnfgLYgERVGa~~vva~~~~~a~~v~sqlk~~iR~~ySnPP~~Ga~vva~IL~~p~Lra~W~~El~~Mr  315 (396)
T COG1448         236 PELLVASSFSKNFGLYGERVGALSVVAEDAEEADRVLSQLKAIIRTNYSNPPAHGAAVVATILNNPELRAEWEQELEEMR  315 (396)
T ss_pred             CCEEEEEHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_conf             85899710001244343002315888278899999999999999863589841239999999489999999999999999


Q ss_pred             CCCCCCCCCHHHHHHCC-C--CCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCCCC
Q ss_conf             21100000002455304-7--76033027408998626410233211332248989999999987397998350228997
Q gi|254780602|r  296 KIFEYRRDLCVAQLQGV-P--GIRYMIPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGHGP  372 (400)
Q Consensus       296 ~~~~~~r~~~~~~L~~~-~--g~~~~~p~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~  372 (400)
                      +++.+.|+.+.+.|++. +  .+.++..|-|||.+.-++                .+=+.+|.++++|.++..      |
T Consensus       316 ~Ri~~mR~~lv~~L~~~~~~~~f~~i~~Q~GMFsy~Gls----------------~~QV~rLree~~IY~v~s------G  373 (396)
T COG1448         316 QRILEMRQALVDALKALGAPRNFDFIISQRGMFSYTGLS----------------PEQVDRLREEFGIYLVAS------G  373 (396)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCEEECCCCC----------------HHHHHHHHHHCCEEEECC------C
T ss_conf             999999999999998627886622475467524458999----------------999999998566799537------8


Q ss_pred             EEEEEEE-CCHHHHHHHHHHHH
Q ss_conf             2899962-99999999999999
Q gi|254780602|r  373 SIRISYA-VSDAILEEACVRIK  393 (400)
Q Consensus       373 ~iRis~~-~~~e~l~~al~rl~  393 (400)
                        |||.+ .++.+++.-.+.|.
T Consensus       374 --Ri~vaGl~~~ni~~va~ai~  393 (396)
T COG1448         374 --RINVAGLNTSNIDYVAKAIA  393 (396)
T ss_pred             --EEEECCCCHHHHHHHHHHHH
T ss_conf             --14653687440899999998


No 107
>pfam04864 Alliinase_C Allinase. Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species. Allicin is synthesized from sulfoxide cysteine derivatives by alliinase (EC:4.4.1.4), whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system.
Probab=99.95  E-value=1.5e-28  Score=193.93  Aligned_cols=287  Identities=18%  Similarity=0.243  Sum_probs=194.0

Q ss_pred             CHHHHHHHHHHHHHHCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCC---C---CCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             9899999999864210133332-233233454333322222223322---3---22223333232222222222222222
Q gi|254780602|r   70 ISPLREAIVEKFRRDNDLHYTS-DQIIVGTGAKHVIFNALMATVNMG---D---EVLIPRPYWVSYPDMVALCGGIPVFV  142 (400)
Q Consensus        70 ~~~lR~aia~~~~~~~g~~~~~-e~I~it~G~~~~l~~~~~~~~~~G---d---~Vlv~~P~y~~y~~~~~~~g~~~~~v  142 (400)
                      .+||-++|.+ +.+--|--+.. -.|++++|++|.+..++.++..++   +   .|+-..|+|+.|.....++.-....+
T Consensus        45 s~eLe~~Ir~-LH~~VGNAvtdgr~iv~GtGsTQL~~Aav~ALs~~~~~~~~p~~VVa~aPyYs~y~~qT~~~~s~~y~w  123 (363)
T pfam04864        45 SPELEREIRR-LHRAVGNAVTDDRYIVFGTGSTQLLQAAVYALSPNVTPTSPPVKVVAAVPYYSVYKEQTSYFDSKGYEW  123 (363)
T ss_pred             CHHHHHHHHH-HHHHHCCCEECCEEEEEECCHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHCCCCCEE
T ss_conf             7999999999-998633421066169991788999999998638899987887323556876644287888845678446


Q ss_pred             CCCCCCCCCCHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf             22222322210333100012212201211354210000123333211122333332011101221100000122332221
Q gi|254780602|r  143 DTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVN  222 (400)
Q Consensus       143 ~~~~~~~~~~d~~~l~~~i~~~~k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~  222 (400)
                      .-+        .......=++.+=.=++|+||||.|.+     .+++++    .....+|.|-+|-+     ..+++|..
T Consensus       124 ~Gd--------a~~~~~~~~~~~~IElVtSPNNPdG~l-----r~aV~~----g~~~k~i~D~aYYW-----PhyTpIt~  181 (363)
T pfam04864       124 KGN--------ASAYVNTDNPGPFIELVTSPNNPDGTL-----REAVID----GSEAKVIHDLAYYW-----PHYTPITY  181 (363)
T ss_pred             CCC--------HHHHCCCCCCCCEEEEEECCCCCCCHH-----HHHHCC----CCCCEEEEEEEEEC-----CCCCCCCC
T ss_conf             346--------898367999887289983899984013-----366506----99841887520006-----66667677


Q ss_pred             CCCCCCCEEEEECCCCCCCCCCCCCCCC-CCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC----------CCCC
Q ss_conf             1123332257414654432234454442-2110122687531001222332222222222223467----------6432
Q gi|254780602|r  223 VEPSLYERTLVVNGVSKAYAMTGLRIGY-AAGALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGP----------QDFV  291 (400)
Q Consensus       223 ~~~~~~~~~i~~~S~SK~~~~~G~RiG~-~v~~~~li~~l~~~~~~~~~~~~~~~q~a~~~~l~~~----------~~~~  291 (400)
                      .    .|..|.+.++||..|.+|+|+|| ++-++++.++|.++.+..+.|++.-+|..+++.|..-          .+.+
T Consensus       182 ~----aD~DIMLFTlSK~TGHAGsRiGWALVKD~~VakkM~~y~~lNt~GvS~dSQlRa~kiLkvv~~~~~~~~~~~~iF  257 (363)
T pfam04864       182 P----ADEDIMLFTMSKYTGHAGSRFGWALVKDEEVAKKMVEYIELNTIGVSKESQLRTLKILKVVLATCKTESGTMGFF  257 (363)
T ss_pred             C----CCCCEEEEEECCCCCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHH
T ss_conf             7----767679898612236762523478863799999999997650530688999999999999997632676623578


Q ss_pred             CCCCCCCCCCCCCHHHHHHCCCCCEE--EECCC-CE----------EEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf             22222110000000245530477603--30274-08----------9986264102332113322489899999999873
Q gi|254780602|r  292 VNNRKIFEYRRDLCVAQLQGVPGIRY--MIPDG-AF----------YLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIE  358 (400)
Q Consensus       292 ~~~~~~~~~~r~~~~~~L~~~~g~~~--~~p~g-~~----------y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~  358 (400)
                      +--++..++|-+.+.+.++...-++.  ..|+. .|          |.|++|..             ...+-|..+|+++
T Consensus       258 ~fg~~~m~~RW~~L~~~v~~S~~FsL~~~~p~yC~ff~~~~~~sPafaWlkCe~-------------eed~DC~~~L~~~  324 (363)
T pfam04864       258 DFGYQTMRERWERLRELVSSSTRFSLQKLPPEYCNYFKKIREPSPAYAWLKCEW-------------EEDTDCYEVLREG  324 (363)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCEEECCCCCCCCCCCCCCCCCCCCCEEEEEECC-------------CCHHHHHHHHHHC
T ss_conf             999999999999999997115807726778776654232168998637997266-------------3201799999878


Q ss_pred             CEEEECCCCCCC-CCEEEEEEECCHHHHHHHHHHHHHHH
Q ss_conf             979983502289-97289996299999999999999999
Q gi|254780602|r  359 KVAVVQGSSFGH-GPSIRISYAVSDAILEEACVRIKRFC  396 (400)
Q Consensus       359 gV~v~pG~~Fg~-~~~iRis~~~~~e~l~~al~rl~~~l  396 (400)
                      ||+.++|..||. +.|||||+..+.+++++.++||++++
T Consensus       325 ~I~~r~G~~Fga~~~YVRlSll~~~d~Fd~lleRL~~lV  363 (363)
T pfam04864       325 KILTRSGERFGADSRYVRLSLIKTQDDFDQLLQRLKSLV  363 (363)
T ss_pred             CEECCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHC
T ss_conf             864568764588987699984068878999999998549


No 108
>TIGR01979 sufS cysteine desulfurases, SufS subfamily; InterPro: IPR010970   Cysteine desulphurases are pyridoxal-phosphate enzymes which catalyse the removal of sulphur from L-cysteine to form L-alanine and elemental sulphur. These enzymes have been shown to play an important role in the biosynthesis of iron-sulphur clusters, thionucleosides in tRNA, thiamine, biotin, lipoate and molydopterin    This entry represents a subfamily of NifS-related cysteine desulphurases that are often involved in iron-sulphur cluster formation, which is needed for nitrogen fixation and other vital functions . Many of these enzymes, in addition to cysteine desulphurase activity, also show selenocysteine lyase activity where L-selenocysteine is converted to L-alanine and selenide . Some of these enzymes are much more specific for selenocysteine than cysteine and are thus believed to function in selenium metabolism rather than sulphur metabolism.   Structural studies of the E. coli  and Synechocystis  enzymes indicate that they are homodimers which show a similar fold to other members of the alpha family of pyridoxal-phosphate enzymes .; GO: 0030170 pyridoxal phosphate binding, 0031071 cysteine desulfurase activity, 0006534 cysteine metabolic process.
Probab=99.94  E-value=1.4e-27  Score=188.04  Aligned_cols=329  Identities=21%  Similarity=0.280  Sum_probs=227.9

Q ss_pred             CC-CCEEECCCCCCCCCCCHHHHHHHHHHHHCC---CCC--CC----CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf             69-972665658974988999999999998388---756--99----877898999999998642101333322332334
Q gi|254780602|r   29 KG-IDVLCLTAGEPDFDMPENVKYAVVRAMERG---ETK--YT----AVAGISPLREAIVEKFRRDNDLHYTSDQIIVGT   98 (400)
Q Consensus        29 ~g-~~ii~l~~G~p~~~~p~~i~~a~~~al~~~---~~~--Y~----~~~G~~~lR~aia~~~~~~~g~~~~~e~I~it~   98 (400)
                      .| ++++-|--|--. .=|..|++|+.+.-.+.   .++  |.    .+..+.+.|+.+++|.+..     ++++|++|-
T Consensus        15 ~Gg~pLvYLDsAAT~-QKP~~Vida~~~yY~~~nANVHRG~H~Ls~~AT~~YE~~R~kva~FiNA~-----~~~EIvFT~   88 (409)
T TIGR01979        15 NGGKPLVYLDSAATS-QKPQAVIDAVEEYYRKSNANVHRGIHTLSVRATEAYEEAREKVAKFINAA-----SAEEIVFTR   88 (409)
T ss_pred             CCCCCEEEECCCCCC-CCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----CCCCEEEEC
T ss_conf             799841773485100-28477999999998751670016899999999999999999999850889-----985478707


Q ss_pred             CCCCCCCCCCCCC----CCC----CCCCCCCCC----CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCC
Q ss_conf             5433332222222----332----232222333----3232222222222222222222223222103331000122122
Q gi|254780602|r   99 GAKHVIFNALMAT----VNM----GDEVLIPRP----YWVSYPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQAITPKTK  166 (400)
Q Consensus        99 G~~~~l~~~~~~~----~~~----Gd~Vlv~~P----~y~~y~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~k  166 (400)
                      |++++|+++..++    +.+    ||+|++..=    .-.+|..+++..|+++.++++++++  .+|+|++++.+++|||
T Consensus        89 gtTe~iNLvA~s~g~~~l~~av~pGDeIv~s~mEHHaNiVPWQ~l~~r~GA~lk~~~l~~~G--~ld~~~l~~~~~~~TK  166 (409)
T TIGR01979        89 GTTESINLVAYSWGRSRLKAAVDPGDEIVISEMEHHANIVPWQLLAERTGATLKFIPLDDDG--TLDLDDLEELLTEKTK  166 (409)
T ss_pred             CCCHHHHHHHHHHCCCCCHHHCCCCCEEEECCHHHHCCHHHHHHHHHHHCCEEEEEECCCCC--EEEHHHHHHHHHCCCE
T ss_conf             60278899999831101342538988798401110012147999997609878997448876--0518889988326982


Q ss_pred             CEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCC
Q ss_conf             01211354210000123333211122333332011101221100000122332221112333225741465443223445
Q gi|254780602|r  167 WLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTGL  246 (400)
Q Consensus       167 ~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~~~G~  246 (400)
                      +|-+++=+|=||++-+.+++.   +. ++++|..++.|-+=      +.+|-++   +-..-+.-+++.|--|.||-+| 
T Consensus       167 lVa~~HvSNVlGtvnP~~ei~---~~-AH~~GA~vlvDGAQ------~~pH~pv---Dv~~ldcDFyvFSGHKmyGPtG-  232 (409)
T TIGR01979       167 LVAITHVSNVLGTVNPVEEII---KL-AHQVGAKVLVDGAQ------AVPHMPV---DVQALDCDFYVFSGHKMYGPTG-  232 (409)
T ss_pred             EEEEEEEECCCCCCCCHHHHH---HH-HHHCCCEEEEECCC------CCCCCCC---CHHHHCCCEEEEECCHHHCCCC-
T ss_conf             999974202203014878999---99-86579769986255------7589898---8565578744561004525766-


Q ss_pred             CCCCCCCHHHHHHHHHHHC-----------CC-CCC---------CCCCCCCCC----CCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             4442211012268753100-----------12-223---------322222222----2222346764322222211000
Q gi|254780602|r  247 RIGYAAGALSLIKSMIVLQ-----------GQ-QTS---------GACSIAQWA----AVEALNGPQDFVVNNRKIFEYR  301 (400)
Q Consensus       247 RiG~~v~~~~li~~l~~~~-----------~~-~~~---------~~~~~~q~a----~~~~l~~~~~~~~~~~~~~~~~  301 (400)
                       ||.+.+.++++++|--..           +. +++         |.|.+.|..    |+.+|+.  =-+++..+.-++-
T Consensus       233 -iGVLYGK~~lLe~MPPf~gGG~MI~~V~~~~g~ty~~~P~KFEAGTPniagviGLgaAidYl~~--iG~~~I~~~E~~L  309 (409)
T TIGR01979       233 -IGVLYGKEELLEEMPPFLGGGEMIEEVSLEEGTTYNEAPHKFEAGTPNIAGVIGLGAAIDYLEK--IGLEKIEAHEKEL  309 (409)
T ss_pred             -CEEEHHHHHHHHHCCCCCCCCCEEEEEEECCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHH--CCHHHHHHHHHHH
T ss_conf             -3011278898864778466986157888057711367875456888358999999999999852--3878999999999


Q ss_pred             CCCHHHHHHCCCCCEEEECC-----CCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCC--------C
Q ss_conf             00002455304776033027-----4089986264102332113322489899999999873979983502--------2
Q gi|254780602|r  302 RDLCVAQLQGVPGIRYMIPD-----GAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSS--------F  368 (400)
Q Consensus       302 r~~~~~~L~~~~g~~~~~p~-----g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~--------F  368 (400)
                      ..++.+.|.++||+++.-|+     ||- +=.++.+            ...-|. -.+|++.||+|+-|+.        |
T Consensus       310 ~~yal~~L~~ipg~~iyGP~~~~~R~g~-isFn~~g------------~HpHDV-g~~LD~~GiAvR~GHHCAqPlm~~~  375 (409)
T TIGR01979       310 TAYALERLGEIPGLRIYGPRDAEDRGGI-ISFNVEG------------VHPHDV-GTILDEEGIAVRSGHHCAQPLMRRF  375 (409)
T ss_pred             HHHHHHHHHCCCCEEEECCCCCCCCCCE-EEECCCC------------CCCCHH-HHHCCCCCCEEEECCHHHHHHHHHC
T ss_conf             9999999601898587468774326433-3302588------------870022-3012267756861705324898655


Q ss_pred             CCCCEEEEEEE--CCH---HHHHHHHHHHHHHH
Q ss_conf             89972899962--999---99999999999999
Q gi|254780602|r  369 GHGPSIRISYA--VSD---AILEEACVRIKRFC  396 (400)
Q Consensus       369 g~~~~iRis~~--~~~---e~l~~al~rl~~~l  396 (400)
                      |-+.-.|.||+  .++   |.|.+|+++.++|+
T Consensus       376 ~v~atcRASf~~YNT~ediD~Lv~aL~~v~~~F  408 (409)
T TIGR01979       376 GVPATCRASFYLYNTEEDIDALVEALKKVRKFF  408 (409)
T ss_pred             CCCEEEEEEEEECCCHHHHHHHHHHHHHHHHHH
T ss_conf             996367887410389899999999999999860


No 109
>PRK10874 cysteine sulfinate desulfinase; Provisional
Probab=99.93  E-value=1.2e-25  Score=176.21  Aligned_cols=333  Identities=17%  Similarity=0.147  Sum_probs=210.9

Q ss_pred             CEEECCCCCCCCCCCHHHHHHHHHHHHCCCCC--CCC-CCC------CHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf             72665658974988999999999998388756--998-778------989999999986421013333223323345433
Q gi|254780602|r   32 DVLCLTAGEPDFDMPENVKYAVVRAMERGETK--YTA-VAG------ISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKH  102 (400)
Q Consensus        32 ~ii~l~~G~p~~~~p~~i~~a~~~al~~~~~~--Y~~-~~G------~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~  102 (400)
                      +.|-|.-+--. ++|+.|.+++.+.+......  ... ..|      ..+.|+.+|+++    |.+ ++++|++|+|+++
T Consensus        19 ~~iYlD~Aatt-~~p~~V~~a~~~~~~~~~~n~~~~~~~~~~~~~~~~e~aR~~iA~ll----ga~-~~~eI~fts~~Te   92 (401)
T PRK10874         19 AGVYLDSAATA-LKPQAVIEATQQFYSLSAGNVHRSQFAEAQRLTARYEAAREKVAQLL----NAP-DAKNIVWTRGTTE   92 (401)
T ss_pred             CCEEEECCCCC-CCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC----CCC-CCCEEEEECCHHH
T ss_conf             94897487526-89999999999999864489886410899999999999999999982----969-9897999796589


Q ss_pred             CCCCCCCCC----CCCCCCCCCCCCCCCC----CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEECCCC
Q ss_conf             332222222----3322322223333232----22222222222222222222322210333100012212201211354
Q gi|254780602|r  103 VIFNALMAT----VNMGDEVLIPRPYWVS----YPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPS  174 (400)
Q Consensus       103 ~l~~~~~~~----~~~Gd~Vlv~~P~y~~----y~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~k~i~l~nP~  174 (400)
                      ++.+++.++    .++||+|++..--++.    +....+..|.+++.+|.+.++  .+|++.|+++++++||++.++.-+
T Consensus        93 ~~n~~~~~~~~~~~~~gd~vv~s~~Eh~s~~~pw~~~~~~~g~~v~~~p~~~~g--~~d~~~l~~~i~~~T~lVai~~vs  170 (401)
T PRK10874         93 SINMVAQCYARPRLQPGDEIIVSEAEHHANLVPWLMVAQQTGAKVVKLPLGADR--LPDVDLLPELITPRSRILALGQMS  170 (401)
T ss_pred             HHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHCCCEEEEECCCCCC--CCCHHHHHHHHCCCCEEEEEECCC
T ss_conf             999999999997358998388704413541589999998539636994158888--759999999855896599997966


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCH
Q ss_conf             21000012333321112233333201110122110000012233222111233322574146544322344544422110
Q gi|254780602|r  175 NPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTGLRIGYAAGA  254 (400)
Q Consensus       175 NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~v~~  254 (400)
                      |-||.+.+.   ++|+++| +++++++++|-+.+-    +.-...+..+     +..++..|.-|.+|..|  +|++...
T Consensus       171 n~~G~~~pv---~~I~~~~-~~~g~~~~vDa~Q~~----g~~~idv~~l-----~vD~l~~S~HKl~GP~G--~G~Lyv~  235 (401)
T PRK10874        171 NVTGGCPDL---ARAITLA-HQAGMVVMVDGAQGA----VHFPADVQQL-----DIDFYAFSGHKLYGPTG--IGVLYGK  235 (401)
T ss_pred             CCCCCCCCH---HHHHHHH-HHCCCEEEEECCCCC----CCCCCCHHHH-----CCCEEEEECHHCCCCCC--EEEEEEC
T ss_conf             788655769---9999999-764977997530137----7425466784-----39889987033169981--4999985


Q ss_pred             HHHHHHHHHHCCC--------------------CCCCCCCCCCC-CCCCCCCCC-CCCCCCCCCCCCCCCCCHHHHHHCC
Q ss_conf             1226875310012--------------------22332222222-222223467-6432222221100000002455304
Q gi|254780602|r  255 LSLIKSMIVLQGQ--------------------QTSGACSIAQW-AAVEALNGP-QDFVVNNRKIFEYRRDLCVAQLQGV  312 (400)
Q Consensus       255 ~~li~~l~~~~~~--------------------~~~~~~~~~q~-a~~~~l~~~-~~~~~~~~~~~~~~r~~~~~~L~~~  312 (400)
                      +++++.+......                    ...+.+.+... +..++++.- +.-++...+..+.-.+++.+.|.++
T Consensus       236 ~~~~~~l~P~~~Gg~~~~~~~~~~~~~~~~~~r~e~GT~n~~~i~~l~aal~~l~~~~~~~~~~~~~~L~~~~~~~L~~~  315 (401)
T PRK10874        236 SELLEAMSPWLGGGKMLTEVSFDGFTPQSAPWRLEAGTPNVAGVIGLSAALEWLADIDIEQAESWSRSLATLAEDALAKR  315 (401)
T ss_pred             CCHHHHCCCEECCCCCCCCCCCCCCCCCCCCHHCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             30364278653587540023467654255500025778328899999999999996399999999999999999998528


Q ss_pred             CCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCC--------CCCCEEEEEEE--CCH
Q ss_conf             77603302740899862641023321133224898999999998739799835022--------89972899962--999
Q gi|254780602|r  313 PGIRYMIPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSF--------GHGPSIRISYA--VSD  382 (400)
Q Consensus       313 ~g~~~~~p~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~F--------g~~~~iRis~~--~~~  382 (400)
                      +|+....+.++-.+-+.+.            .....++... |.++||.+..|+..        |.++.||+||+  .++
T Consensus       316 ~g~~~~~~~~~~i~sf~~~------------gi~~~~l~~~-L~~~gi~v~~g~~ca~~~l~alg~~g~iRvS~~~ynT~  382 (401)
T PRK10874        316 PGFRSFRCQDSSLLAFDFA------------GVHHSDMVTL-LAEYGIALRAGQHCAQPLLAALGVTGTLRASFAPYNTQ  382 (401)
T ss_pred             CCCCCCCCCCCCEEEEEEC------------CCCHHHHHHH-HHHCCCEEECCCCCCHHHHHHHCCCCEEEEECCCCCCH
T ss_conf             9965347999988999879------------9599999999-97789789618534289999859999799965888899


Q ss_pred             HHHHHHHHHHHHHHHHCC
Q ss_conf             999999999999998609
Q gi|254780602|r  383 AILEEACVRIKRFCHSLQ  400 (400)
Q Consensus       383 e~l~~al~rl~~~l~~l~  400 (400)
                      ++++..++.|++.++.||
T Consensus       383 ~dId~li~al~~~v~~lr  400 (401)
T PRK10874        383 SDVDALVNAVDRALELLV  400 (401)
T ss_pred             HHHHHHHHHHHHHHHHHC
T ss_conf             999999999999999830


No 110
>TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA. Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.
Probab=99.93  E-value=2.4e-25  Score=174.49  Aligned_cols=333  Identities=17%  Similarity=0.141  Sum_probs=210.9

Q ss_pred             CEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCC---CCCC------CHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf             7266565897498899999999999838875699---8778------989999999986421013333223323345433
Q gi|254780602|r   32 DVLCLTAGEPDFDMPENVKYAVVRAMERGETKYT---AVAG------ISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKH  102 (400)
Q Consensus        32 ~ii~l~~G~p~~~~p~~i~~a~~~al~~~~~~Y~---~~~G------~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~  102 (400)
                      +.|-|.-+-- -++|+.|.+++.+.+.......+   ...|      +.+.|+.+|+++    |.+ ++++|++|+|+++
T Consensus        16 ~~iYlDnAat-t~~p~~V~~a~~~~~~~~~~n~~~s~~~~~~~~~~~~e~aR~~iA~~l----ga~-~~~~Iifts~~Te   89 (398)
T TIGR03392        16 GTVYLDSAAT-ALKPQAVIDATQQFYRLSSGTVHRSQHQQAQSLTARYELARQQVARFL----NAP-DAENIVWTRGTTE   89 (398)
T ss_pred             CEEEEECCCC-CCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC----CCC-CCCEEEEECCHHH
T ss_conf             9088678632-689899999999999863488875143999999999999999999970----959-9897999587799


Q ss_pred             CCCCCCCCC----CCCCCCCCCCCCCCCC----CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEECCCC
Q ss_conf             332222222----3322322223333232----22222222222222222222322210333100012212201211354
Q gi|254780602|r  103 VIFNALMAT----VNMGDEVLIPRPYWVS----YPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPS  174 (400)
Q Consensus       103 ~l~~~~~~~----~~~Gd~Vlv~~P~y~~----y~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~k~i~l~nP~  174 (400)
                      ++.+++.++    .++||+|++..-.++.    +....+..|.+++.+|.+.++  .+|++.++++++++||++.++.-+
T Consensus        90 ~~n~~~~~~~~~~~~~gd~ii~s~~EH~s~~~pw~~~~~~~g~~v~~~~~~~~~--~~d~~~l~~~i~~~T~lVsi~~vs  167 (398)
T TIGR03392        90 SINLVAQSYARPRLQPGDEIIVSEAEHHANLIPWLMVAQQTGAKVVKLPIGADL--LPDIRQLPELLTPRTRILALGQMS  167 (398)
T ss_pred             HHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHCCCEEEEECCCCCC--CCCHHHHHHHCCCCCCEEEEECCC
T ss_conf             999898776887239989899824400342389998876448527996147889--879999998525787089982555


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCH
Q ss_conf             21000012333321112233333201110122110000012233222111233322574146544322344544422110
Q gi|254780602|r  175 NPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTGLRIGYAAGA  254 (400)
Q Consensus       175 NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~v~~  254 (400)
                      |=||.+.+.   ++|+++| +++++++++|-+.+-    +.-...+..+     +--++..|.-|.+|..|  +|++...
T Consensus       168 n~~G~i~pi---~~I~~~~-~~~g~~~~vDa~Q~~----g~~~idv~~~-----~~D~~~~S~hKl~GP~G--~G~Ly~~  232 (398)
T TIGR03392       168 NVTGGCPDL---ARAITLA-HQYGAVVVVDGAQGV----VHGPPDVQAL-----DIDFYAFSGHKLYGPTG--IGVLYGK  232 (398)
T ss_pred             CCCCCCCCH---HHHHHHH-HHCCCEEEEECCCCC----CCCCCCCCCC-----CCCEEEEECCCCCCCCC--EEEEEEC
T ss_conf             678885879---9999999-865974786334115----6203341026-----78779986553569984--1899984


Q ss_pred             HHHHHHHHHHCCC--------------------CCCCCCCC-CCCCCCCCCCCCC-CCCCCCCCCCCCCCCCHHHHHHCC
Q ss_conf             1226875310012--------------------22332222-2222222234676-432222221100000002455304
Q gi|254780602|r  255 LSLIKSMIVLQGQ--------------------QTSGACSI-AQWAAVEALNGPQ-DFVVNNRKIFEYRRDLCVAQLQGV  312 (400)
Q Consensus       255 ~~li~~l~~~~~~--------------------~~~~~~~~-~q~a~~~~l~~~~-~~~~~~~~~~~~~r~~~~~~L~~~  312 (400)
                      +++++.+......                    ...+.+.+ ...+..++++... .-+++.....+...+++.+.|.++
T Consensus       233 ~~~~~~l~p~~~Gg~~~~~~~~~~~~~~~~~~r~e~GT~n~~~i~gl~~al~~l~~~~~~~~~~~~~~L~~~~~~~l~~l  312 (398)
T TIGR03392       233 TELLEAMPPWQGGGKMLSHVSFDGFIPQAVPHRFEAGTPNIAGVIGLSAALEWLTDIDIAAAEAWSVSLADLAEERLAQL  312 (398)
T ss_pred             CHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             11474379735799734433477764455502114688548789999999999996499999999999999999998638


Q ss_pred             CCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCC--------CCCCEEEEEEE--CCH
Q ss_conf             77603302740899862641023321133224898999999998739799835022--------89972899962--999
Q gi|254780602|r  313 PGIRYMIPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSF--------GHGPSIRISYA--VSD  382 (400)
Q Consensus       313 ~g~~~~~p~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~F--------g~~~~iRis~~--~~~  382 (400)
                      +|+....+.++-.+-+.+.            .....++... |.+.||.+..|+.+        |.++.||+||+  .++
T Consensus       313 ~g~~~~~~~~~~~~~f~~~------------~~~~~~l~~~-L~~~gi~v~~G~~ca~~~l~a~g~~g~iRvS~~~ynT~  379 (398)
T TIGR03392       313 PGFRSFRCPGSSLLAFDFA------------GVHHSDLAAL-LAESGIALRAGQHCAQPLMAALGVSGTLRASFAPYNTQ  379 (398)
T ss_pred             CCCCCCCCCCCCEEEEEEC------------CCCHHHHHHH-HHHCCCEEECCCCCCHHHHHHHCCCCEEEEECCCCCCH
T ss_conf             9964457999967999879------------9399999999-97789799668665489999868998799967888899


Q ss_pred             HHHHHHHHHHHHHHHHCC
Q ss_conf             999999999999998609
Q gi|254780602|r  383 AILEEACVRIKRFCHSLQ  400 (400)
Q Consensus       383 e~l~~al~rl~~~l~~l~  400 (400)
                      ++++..++.|++.++.|+
T Consensus       380 edId~li~aL~~~l~~l~  397 (398)
T TIGR03392       380 QDVDALVDAVGAALELLN  397 (398)
T ss_pred             HHHHHHHHHHHHHHHHHC
T ss_conf             999999999999999843


No 111
>PRK09295 selenocysteine lyase; Validated
Probab=99.93  E-value=4.9e-25  Score=172.53  Aligned_cols=333  Identities=16%  Similarity=0.152  Sum_probs=208.4

Q ss_pred             CCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCC-----CCCC----CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf             6997266565897498899999999999838875-----6998----778989999999986421013333223323345
Q gi|254780602|r   29 KGIDVLCLTAGEPDFDMPENVKYAVVRAMERGET-----KYTA----VAGISPLREAIVEKFRRDNDLHYTSDQIIVGTG   99 (400)
Q Consensus        29 ~g~~ii~l~~G~p~~~~p~~i~~a~~~al~~~~~-----~Y~~----~~G~~~lR~aia~~~~~~~g~~~~~e~I~it~G   99 (400)
                      .|.++|-|--+--. +.|+.|.+++.+.+.+...     .|..    ..-..+.|+.+|++++    . -++++|++|+|
T Consensus        20 ~~~~~iYlDnaAtt-~~p~~Vi~a~~~~~~~~~~n~~~~~~~~~~~a~~~~e~aR~~iA~~lg----a-~~~~eIvFts~   93 (406)
T PRK09295         20 NGLPLAYLDSAASA-QKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKQASLFIN----A-RSAEELVFVRG   93 (406)
T ss_pred             CCCCEEEECCCCCC-CCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC----C-CCCCEEEEECC
T ss_conf             89975995288537-899999999999998656988864138999999999999999999749----9-99896999378


Q ss_pred             CCCCCCCCCCCC----CCCCCCCCCCCCCCCC----CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEEC
Q ss_conf             433332222222----3322322223333232----22222222222222222222322210333100012212201211
Q gi|254780602|r  100 AKHVIFNALMAT----VNMGDEVLIPRPYWVS----YPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQAITPKTKWLFLN  171 (400)
Q Consensus       100 ~~~~l~~~~~~~----~~~Gd~Vlv~~P~y~~----y~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~k~i~l~  171 (400)
                      +++++.+++..+    .++||+|++..-.++.    +....+..|+++..+|.++++  .+|+|+++++++++||++.++
T Consensus        94 ~Tea~N~~~~~~~~~~~~~gd~vi~s~~EH~s~~~pw~~l~~~~G~~v~~vp~~~~g--~id~~~l~~~i~~~T~LVsv~  171 (406)
T PRK09295         94 TTEGINLVANSWGNSNVRAGDNIIISEMEHHANIVPWQMLCARVGAELRVIPLNPDG--TLQLETLPALFDERTRLLAIT  171 (406)
T ss_pred             CHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHCCEEEEEECCCCC--CCCHHHHHHHHCCCCEEEEEE
T ss_conf             169988888666886058989899946642878889999999649624898038998--485999998753796399997


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCC
Q ss_conf             35421000012333321112233333201110122110000012233222111233322574146544322344544422
Q gi|254780602|r  172 SPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTGLRIGYA  251 (400)
Q Consensus       172 nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~  251 (400)
                      .-+|-||.+.+.+   +|+++| ++++++++.|-+.+-    +.-...+..+     +.-++..|.-|.+|..|  +|++
T Consensus       172 ~vsn~~G~i~pv~---~I~~~~-~~~g~~~~vDaaQ~~----g~~~idv~~l-----~~D~~~~S~HKl~GP~G--~G~L  236 (406)
T PRK09295        172 HVSNVLGTENPLA---EMIALA-HQHGAKVLVDGAQAV----MHHPVDVQAL-----DCDFYVFSGHKLYGPTG--IGIL  236 (406)
T ss_pred             ECCCCCCCCCCHH---HHHHHH-HHCCCEEEEECCCCC----CCCCCCHHHH-----HCCEEEEEHHHCCCCCC--EEEE
T ss_conf             1367888717899---999988-755854896423466----8105546663-----15479986142269981--4999


Q ss_pred             CCHHHHHHHHHHHCCC---------------------CCCCCCCCCC-CCCCCCCCCCC-CCCCCCCCCCCCCCCCHHHH
Q ss_conf             1101226875310012---------------------2233222222-22222234676-43222222110000000245
Q gi|254780602|r  252 AGALSLIKSMIVLQGQ---------------------QTSGACSIAQ-WAAVEALNGPQ-DFVVNNRKIFEYRRDLCVAQ  308 (400)
Q Consensus       252 v~~~~li~~l~~~~~~---------------------~~~~~~~~~q-~a~~~~l~~~~-~~~~~~~~~~~~~r~~~~~~  308 (400)
                      ...+++++.+..+...                     ...+.+.+.. .+..++++.-. --+++..+..++..+++.+.
T Consensus       237 yv~~~~~~~l~P~~~GG~~~~~~~~~~~~~~~~~p~rfe~GT~n~~~i~gl~aAl~~~~~~g~~~i~~~~~~L~~~l~~~  316 (406)
T PRK09295        237 YVKEALLQEMPPWEGGGSMIATVSLTEGTTWAKAPWRFEAGTPNTGGIIGLGAALDYVSALGLNNIAEYEQNLMHYALSQ  316 (406)
T ss_pred             EECHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCCHHCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_conf             98334563178631688631100345675535652220588876889999999999999718899999999999999999


Q ss_pred             HHCCCCCEEEECCCC--EEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCC--------CCCCEEEEEE
Q ss_conf             530477603302740--899862641023321133224898999999998739799835022--------8997289996
Q gi|254780602|r  309 LQGVPGIRYMIPDGA--FYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSF--------GHGPSIRISY  378 (400)
Q Consensus       309 L~~~~g~~~~~p~g~--~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~F--------g~~~~iRis~  378 (400)
                      |++++++++..|+..  ...| .+            ...+..++.. +|++.||.+..|+.+        +.++.+|+||
T Consensus       317 L~~~~~v~~~gp~~r~~ivsf-~~------------~~~~~~~v~~-~L~~~gI~vr~G~~Ca~~~~~~~~~~~~iRvS~  382 (406)
T PRK09295        317 LEQVPDLTLYGPQNRLGVIAF-NL------------GKHHAYDVGS-FLDNYGIAVRTGHHCAMPLMAYYNVPAMCRASL  382 (406)
T ss_pred             HHCCCCEEEECCCCCCEEEEE-EC------------CCCCHHHHHH-HHHHCCEEEECCHHHHHHHHHHHCCCCEEEEEC
T ss_conf             736999899588775507999-73------------8989999999-985499899763433304457628996799978


Q ss_pred             E--CCHHHHHHHHHHHHHHHHH
Q ss_conf             2--9999999999999999986
Q gi|254780602|r  379 A--VSDAILEEACVRIKRFCHS  398 (400)
Q Consensus       379 ~--~~~e~l~~al~rl~~~l~~  398 (400)
                      +  .++|+++.-++.|++..+-
T Consensus       383 ~~ynT~eeId~lv~aL~~I~k~  404 (406)
T PRK09295        383 AMYNTHEEVDRLVAGLQRIHRL  404 (406)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHH
T ss_conf             8999999999999999999997


No 112
>cd06453 SufS_like Cysteine desulfurase (SufS)-like. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.
Probab=99.90  E-value=9e-24  Score=164.86  Aligned_cols=312  Identities=17%  Similarity=0.168  Sum_probs=195.0

Q ss_pred             CCCCHHHHHHHHHHHHCCC-----CCCCCCC----CCHHHHHHHHHHHHHHCCCCC-CCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             9889999999999983887-----5699877----898999999998642101333-32233233454333322222223
Q gi|254780602|r   43 FDMPENVKYAVVRAMERGE-----TKYTAVA----GISPLREAIVEKFRRDNDLHY-TSDQIIVGTGAKHVIFNALMATV  112 (400)
Q Consensus        43 ~~~p~~i~~a~~~al~~~~-----~~Y~~~~----G~~~lR~aia~~~~~~~g~~~-~~e~I~it~G~~~~l~~~~~~~~  112 (400)
                      -++|+.|++++.+.+.+..     ..|....    -+.+.|+.+|+++    |  + +|++|++|+|+++++.+++..+.
T Consensus         9 t~~~~~V~~~~~~~~~~~~~np~~~~~~~~~~a~~~le~aR~~ia~~l----g--~~~~~eI~fts~aTea~n~~~~~l~   82 (373)
T cd06453           9 SQKPQPVIDAIVDYYRHYNANVHRGVHELSARATDAYEAAREKVARFI----N--APSPDEIIFTRNTTEAINLVAYGLG   82 (373)
T ss_pred             CCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHC----C--CCCCCEEEECCCHHHHHHHHHHHHH
T ss_conf             689999999999999975899873050999999999999999999974----9--6998979991886799878865302


Q ss_pred             ---CCCCCCCCCCCCCCC----CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCC
Q ss_conf             ---322322223333232----2222222222222222222232221033310001221220121135421000012333
Q gi|254780602|r  113 ---NMGDEVLIPRPYWVS----YPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNR  185 (400)
Q Consensus       113 ---~~Gd~Vlv~~P~y~~----y~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~k~i~l~nP~NPTG~v~s~~~  185 (400)
                         .+||+|++..--++.    +....+..|+++..+|.++++  .+|+|+++++++++|+++.++.-+|-||.+.+.  
T Consensus        83 ~~~~~gd~Vi~s~~EH~s~~~p~~~la~~~G~~v~~ip~~~~G--~i~~~~l~~~i~~~T~lV~~~~v~n~tG~~~pi--  158 (373)
T cd06453          83 RANKPGDEIVTSVMEHHSNIVPWQQLAERTGAKLKVVPVDDDG--QLDLEALEKLLTERTKLVAVTHVSNVLGTINPV--  158 (373)
T ss_pred             HCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCEEEEECCCCCC--CCCHHHHHHHCCCCCEEEEEECCCCCCCCCCCH--
T ss_conf             0269999899760111242789999987059589850789788--588999997545895699997856677608879--


Q ss_pred             CCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf             32111223333320111012211000001223322211123332257414654432234454442211012268753100
Q gi|254780602|r  186 LRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTGLRIGYAAGALSLIKSMIVLQ  265 (400)
Q Consensus       186 l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~v~~~~li~~l~~~~  265 (400)
                       ++|+++| ++++++++.|-+.+-    |.-...+..+     +--+++.|.-|.++-.|  +|++...+++...+....
T Consensus       159 -~~I~~~~-~~~g~~~~vDa~Qa~----g~~~idv~~~-----~~D~~~~s~hK~~GP~G--~G~Lyv~~~~~~~l~p~~  225 (373)
T cd06453         159 -KEIGEIA-HEAGVPVLVDGAQSA----GHMPVDVQDL-----GCDFLAFSGHKMLGPTG--IGVLYGKEELLEEMPPYG  225 (373)
T ss_pred             -HHHHHHH-HHCCCEEEEECCCCC----CCCCCCHHHH-----HCCEEEEECHHCCCCCC--EEEEEECCHHHHCCCCCC
T ss_conf             -9999999-874976998762124----5546517776-----27738976101158883--499998601452478331


Q ss_pred             CCC--------------------CCCCCC-CCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCHHHHHHCCCCCEEEECC--
Q ss_conf             122--------------------233222-22222222234676-432222221100000002455304776033027--
Q gi|254780602|r  266 GQQ--------------------TSGACS-IAQWAAVEALNGPQ-DFVVNNRKIFEYRRDLCVAQLQGVPGIRYMIPD--  321 (400)
Q Consensus       266 ~~~--------------------~~~~~~-~~q~a~~~~l~~~~-~~~~~~~~~~~~~r~~~~~~L~~~~g~~~~~p~--  321 (400)
                      ...                    ..+.+. +.-.++.++++.-. .-+++..+...+-.+++.+.|++++|+++..+.  
T Consensus       226 ~gg~~~~~~~~~~~~~~~~~~rfe~GT~n~~~i~~l~~al~~~~~~g~~~i~~~~~~L~~~l~~~L~~l~~v~i~~~~~~  305 (373)
T cd06453         226 GGGEMIEEVSFEETTYADLPHKFEAGTPNIAGAIGLGAAIDYLEKIGMEAIAAHEHELTAYALERLSEIPGVRVYGDAED  305 (373)
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCC
T ss_conf             68875333234322225552202556755889999999999999848999999999999999999963899762488455


Q ss_pred             -CCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCC--------CCCCEEEEEEE--CCHHHHHHHHH
Q ss_conf             -40899862641023321133224898999999998739799835022--------89972899962--99999999999
Q gi|254780602|r  322 -GAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSF--------GHGPSIRISYA--VSDAILEEACV  390 (400)
Q Consensus       322 -g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~F--------g~~~~iRis~~--~~~e~l~~al~  390 (400)
                       .+...| .+            ...+..++...| +++||.+..|+.+        |.++.||+||+  .++++++..++
T Consensus       306 r~~ivsf-~~------------~~~~~~~v~~~L-~~~gI~vs~G~~Ca~~~~~~~g~~g~iRvS~~~ynt~~dId~li~  371 (373)
T cd06453         306 RAGVVSF-NL------------EGIHPHDVATIL-DQYGIAVRAGHHCAQPLMRRLGVPGTVRASFGLYNTEEEIDALVE  371 (373)
T ss_pred             CCCEEEE-EE------------CCCCHHHHHHHH-HHCCEEEECCCCCCHHHHHHHCCCCEEEEECCCCCCHHHHHHHHH
T ss_conf             6888999-96------------995999999999-679929978633244889972899879996888899999999995


Q ss_pred             H
Q ss_conf             9
Q gi|254780602|r  391 R  391 (400)
Q Consensus       391 r  391 (400)
                      .
T Consensus       372 a  372 (373)
T cd06453         372 A  372 (373)
T ss_pred             H
T ss_conf             5


No 113
>TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type. Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PMID:11123951), so we use this designation.
Probab=99.90  E-value=8e-24  Score=165.15  Aligned_cols=317  Identities=14%  Similarity=0.117  Sum_probs=199.8

Q ss_pred             CCCCHHHHHHHHHHHHCCCCCCCCCCC-----------CHHHHHHHHHHHHHHCCCCCC-CCCCCCCCCCCCCCCCCCCC
Q ss_conf             988999999999998388756998778-----------989999999986421013333-22332334543333222222
Q gi|254780602|r   43 FDMPENVKYAVVRAMERGETKYTAVAG-----------ISPLREAIVEKFRRDNDLHYT-SDQIIVGTGAKHVIFNALMA  110 (400)
Q Consensus        43 ~~~p~~i~~a~~~al~~~~~~Y~~~~G-----------~~~lR~aia~~~~~~~g~~~~-~e~I~it~G~~~~l~~~~~~  110 (400)
                      -|+|+.|++++.+.+.+.   |..+.+           +.+.|+.+|+++      +.. +++|++|+|+++++.+++..
T Consensus         9 t~~~~~Vi~~~~~~~~~~---~~Np~s~h~~~~~a~~~~e~aR~~ia~~l------~a~~~~eIvFTsg~Tea~N~~~~g   79 (382)
T TIGR03403         9 TMLDPKVKELMDPFFCDI---YGNPNSLHQFGTATHPAIAEALDKLYKGI------NARDLDDIIITSCATESNNWVLKG   79 (382)
T ss_pred             CCCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHHHHHHHHHHHC------CCCCCCEEEEECCHHHHHHHHHHH
T ss_conf             899999999999999866---89963253999999999999999999975------969978699938758999999999


Q ss_pred             CC-----CC-CCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEECCCCCCCCCCC
Q ss_conf             23-----32-23222233---33232222222222222222222223222103331000122122012113542100001
Q gi|254780602|r  111 TV-----NM-GDEVLIPR---PYWVSYPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVVY  181 (400)
Q Consensus       111 ~~-----~~-Gd~Vlv~~---P~y~~y~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~k~i~l~nP~NPTG~v~  181 (400)
                      +.     ++ +|+|++..   |.-.......+..|.++.++|++.++  .+|+++++++++++|++|.++.-||=||.+.
T Consensus        80 l~~~~~~~~~~~~ii~s~~EH~sv~~~~~~l~~~G~~v~~~~~d~~G--~~d~~~l~~~l~~~T~LVai~~anN~tG~i~  157 (382)
T TIGR03403        80 VYFDEILKGGKNHIITTEVEHPAVRATCAFLESLGVEVTYLPINEQG--TITAEQVREAITEKTALVSVMWANNETGMIF  157 (382)
T ss_pred             HHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEECCCCCC--CCCHHHHHHHCCCCCCEEEEECCCCCCCCCC
T ss_conf             99998636899999995565153899999999659789997759998--5889999976014660677631476777778


Q ss_pred             CCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf             23333211122333332011101221100000122332221112333225741465443223445444221101226875
Q gi|254780602|r  182 SQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTGLRIGYAAGALSLIKSM  261 (400)
Q Consensus       182 s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~v~~~~li~~l  261 (400)
                      +.++   |+++| ++++++++.|-+..-    +.-+..+..+     +-.+...|.-|.+|..|  +|.+...+++  .+
T Consensus       158 pv~~---I~~~~-~~~g~~~~vDa~Q~~----g~~pidv~~l-----~~D~l~~S~HK~~GP~G--iG~L~ir~~~--~l  220 (382)
T TIGR03403       158 PIKE---IGEIC-KERGVLFHTDAVQAI----GKIPVDVQKA-----GVDFLSFSAHKFHGPKG--VGGLYIRKGV--EL  220 (382)
T ss_pred             CHHH---HHHHH-HHCCCEEEEEHHHHC----CCCCCCCCCC-----CCCEEEEEHHHCCCCCC--EEEEEECCCC--CC
T ss_conf             7999---99999-872987996713413----5646432323-----46524531010368883--4999986777--65


Q ss_pred             HHHC---C---CCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEECCCC---EEEEEECC
Q ss_conf             3100---1---222332-222222222223467643222222110000000245530477603302740---89986264
Q gi|254780602|r  262 IVLQ---G---QQTSGA-CSIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQGVPGIRYMIPDGA---FYLYPSCQ  331 (400)
Q Consensus       262 ~~~~---~---~~~~~~-~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~~~~~L~~~~g~~~~~p~g~---~y~~~~~~  331 (400)
                      ....   .   ....+. +.+...+..++++...++++......++.++++.+.|++++++.+..+...   ..+.+.++
T Consensus       221 ~P~~~Gg~~~~~~r~GT~n~~~i~~l~~A~~~~~~~~~~~~~~~~~L~~~l~~~L~~i~~~~i~g~~~~r~p~~~~~~~~  300 (382)
T TIGR03403       221 TPLFHGGEHMGGRRSGTLNVPYIVAMGEAMRLANEYLDFEKSHVRRLRDRLEDALLELPDVFVVGDREHRVPNTILISIK  300 (382)
T ss_pred             CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCHHHCCCCEEEEECC
T ss_conf             87658987747612798678899999999999999899999999999999999998177946716833258857986279


Q ss_pred             CCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCC-------------------CCEEEEEEE--CCHHHHHHHHH
Q ss_conf             102332113322489899999999873979983502289-------------------972899962--99999999999
Q gi|254780602|r  332 DLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGH-------------------GPSIRISYA--VSDAILEEACV  390 (400)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~-------------------~~~iRis~~--~~~e~l~~al~  390 (400)
                                  ..++..+... |++.||.+..|+.+-.                   .+.||+||+  +++|+++..++
T Consensus       301 ------------~i~~~~~~~~-L~~~gI~v~~GsaCas~~~~~s~vl~a~g~~~~~~~~~vR~S~~~ynT~eeId~~i~  367 (382)
T TIGR03403       301 ------------GVEGEAMLWD-LNKAGIAASTGSACASEDLEANPVMVAIGADKELAHTAIRLSLSRFTTEEEIDYTIE  367 (382)
T ss_pred             ------------CCCHHHHHHH-HCCCCEEEECHHHHCCCCCCCCHHHHHCCCCHHHCCCEEEEECCCCCCHHHHHHHHH
T ss_conf             ------------9898999998-470997997557728998875899997199854459579997589999999999999


Q ss_pred             HHHHHHHHCC
Q ss_conf             9999998609
Q gi|254780602|r  391 RIKRFCHSLQ  400 (400)
Q Consensus       391 rl~~~l~~l~  400 (400)
                      .|++.+++||
T Consensus       368 ~l~~~v~~lr  377 (382)
T TIGR03403       368 VFKKAVQRLR  377 (382)
T ss_pred             HHHHHHHHHH
T ss_conf             9999999998


No 114
>pfam00266 Aminotran_5 Aminotransferase class-V. This domain is found in amino transferases, and other enzymes including cysteine desulphurase EC:4.4.1.-.
Probab=99.89  E-value=2.9e-23  Score=161.75  Aligned_cols=310  Identities=18%  Similarity=0.197  Sum_probs=194.3

Q ss_pred             CCCHHHHHHHHHHHHCCCCCCCCCC----C------CHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC--
Q ss_conf             8899999999999838875699877----8------989999999986421013333223323345433332222222--
Q gi|254780602|r   44 DMPENVKYAVVRAMERGETKYTAVA----G------ISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFNALMAT--  111 (400)
Q Consensus        44 ~~p~~i~~a~~~al~~~~~~Y~~~~----G------~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l~~~~~~~--  111 (400)
                      |+|+.|++++.+.+.+.... +.+.    |      +.+.|+.+++++    |.. ++++|++|+|+++++.+++..+  
T Consensus        10 p~~~~V~~~~~~~~~~~~~n-p~s~~~~~~~~~~~~~e~aR~~ia~~l----ga~-~~~~i~ft~~~Te~~n~~~~~~~~   83 (371)
T pfam00266        10 QKPQAVLDALQEYYTDYNGN-VHRGVHHLGKEATQAYEEAREKVAEFI----NAP-SDEEIIFTSGTTEAINLVAISLGR   83 (371)
T ss_pred             CCCHHHHHHHHHHHHHCCCC-CCCCCCHHHHHHHHHHHHHHHHHHHHC----CCC-CCCEEEECCCHHHHHHHHHHHHHH
T ss_conf             89999999999999864888-565214999999999999999999971----939-989799848878998876523453


Q ss_pred             -CCCCCCCCCCCCCCCCC----CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCC
Q ss_conf             -33223222233332322----2222222222222222222322210333100012212201211354210000123333
Q gi|254780602|r  112 -VNMGDEVLIPRPYWVSY----PDMVALCGGIPVFVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRL  186 (400)
Q Consensus       112 -~~~Gd~Vlv~~P~y~~y----~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~k~i~l~nP~NPTG~v~s~~~l  186 (400)
                       ..+||+|++..-.|+.-    ....+..|+++..++.++++  .+|+++++++++++||++.++.-+|-||.+.+.+  
T Consensus        84 ~~~~gd~ii~s~~eh~s~~~~~~~l~~~~g~~v~~i~~~~~g--~i~~~~l~~~i~~~t~lv~~~~v~n~tG~~~pi~--  159 (371)
T pfam00266        84 RLKPGDEILVTEMEHHANLVPWQELAKRTGATVRVIPVDPNG--LLDLDALEKLLTPRTKLVAITHVSNVTGTVNPVE--  159 (371)
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHHHCCCEEEEECCCCCC--CCCHHHHHHHCCCCCEEEEEECCCCCCCEECHHH--
T ss_conf             149989999954775523659999876249569993569898--6989999985689964999967667788240555--


Q ss_pred             CCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf             21112233333201110122110000012233222111233322574146544322344544422110122687531001
Q gi|254780602|r  187 RALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTGLRIGYAAGALSLIKSMIVLQG  266 (400)
Q Consensus       187 ~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~v~~~~li~~l~~~~~  266 (400)
                       +|+++| +++++++++|-+.+-    +.....+..+     ..-+++.|.-|.++-+|  +|++...+++.+.+.....
T Consensus       160 -~i~~~~-~~~g~~~~vDa~q~~----g~~~id~~~~-----g~D~~~~s~hK~~GP~G--~G~L~v~~~~~~~l~p~~~  226 (371)
T pfam00266       160 -EIGKLA-HEYGALVVVDAAQAV----GHRPIDVQAL-----GVDFLAFSGHKLYGPTG--IGVLYGRRDLLEKLPPWKG  226 (371)
T ss_pred             -HHHHHH-HHCCCEEEEECCCCC----CCCCCCCCCC-----CCCEEEEECCCCCCCCC--EEEEEECHHHHHHCCCCCC
T ss_conf             -699998-636917998751236----7522032324-----36569986555689984--3999981577845787567


Q ss_pred             C---------------------CCCCCCCCCC-CCCCCCCCCC-CCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEECCCC
Q ss_conf             2---------------------2233222222-2222223467-643222222110000000245530477603302740
Q gi|254780602|r  267 Q---------------------QTSGACSIAQ-WAAVEALNGP-QDFVVNNRKIFEYRRDLCVAQLQGVPGIRYMIPDGA  323 (400)
Q Consensus       267 ~---------------------~~~~~~~~~q-~a~~~~l~~~-~~~~~~~~~~~~~~r~~~~~~L~~~~g~~~~~p~g~  323 (400)
                      .                     ...+...+.. .++.++++.- +..+++..+..++.++.+.+.|++++++.+..+...
T Consensus       227 g~~~~~~~~~~~~~~~~~~~~~~e~GT~n~~~~~~l~~al~~~~~~g~~~i~~~~~~L~~~l~~~L~~~~~~~i~~~~~~  306 (371)
T pfam00266       227 GGGMIDLVSLLQETTFADAPSKFEAGTPNIAGIIGLGAALDYLAEIGLEAIEKHERELAAYLYERLLAIPGIRLVPAVAE  306 (371)
T ss_pred             CCCCCCCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCC
T ss_conf             99843565422235545614440478998788999999999999819899999999999999999855999899498624


Q ss_pred             EEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCC--------CCCCEEEEEEE--CCHHHHH
Q ss_conf             899862641023321133224898999999998739799835022--------89972899962--9999999
Q gi|254780602|r  324 FYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSF--------GHGPSIRISYA--VSDAILE  386 (400)
Q Consensus       324 ~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~F--------g~~~~iRis~~--~~~e~l~  386 (400)
                           +.+...    .......++.++... |.++||.+..|+.+        +.++.||+|++  .++++++
T Consensus       307 -----~~~~iv----sf~~~~~~~~~~~~~-L~~~gI~vs~G~~Cs~~~l~~~~~~g~iRiS~~~ynT~eeId  369 (371)
T pfam00266       307 -----RRPSII----SFNFPGVHPHDVATL-LDERGIAVRSGHHCAQPLMERLGVHGTLRASLYFYNTEEEVD  369 (371)
T ss_pred             -----CCCCEE----EEEECCCCHHHHHHH-HHHCCEEEECCCCCCCHHHHHHCCCCEEEEECCCCCCHHHHH
T ss_conf             -----668889----999599099999999-734881997640003244487679988999768879999982


No 115
>TIGR03402 FeS_nifS cysteine desulfurase NifS. Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.
Probab=99.88  E-value=4.8e-23  Score=160.41  Aligned_cols=324  Identities=12%  Similarity=0.104  Sum_probs=194.4

Q ss_pred             CCCHHHHHHHHHHHHCCCC----CCCC----CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC---C
Q ss_conf             8899999999999838875----6998----778989999999986421013333223323345433332222222---3
Q gi|254780602|r   44 DMPENVKYAVVRAMERGET----KYTA----VAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFNALMAT---V  112 (400)
Q Consensus        44 ~~p~~i~~a~~~al~~~~~----~Y~~----~~G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l~~~~~~~---~  112 (400)
                      ++|+.+.+++.+.+.+...    .|..    ..=+.+.|+.+|+++    |  .++++|++|+|+++++..++..+   .
T Consensus        10 ~~~~~V~~a~~~~~~~~~~np~~~h~~~~~a~~~~e~aR~~iA~~l----g--a~~~eIvFt~~~T~a~n~~i~~~~~~~   83 (379)
T TIGR03402        10 RVDPEVLEAMLPYFTEYFGNPSSMHSFGGEVGKAVEEAREQVAKLL----G--AEPDEIIFTSGGTESDNTAIKSALAAQ   83 (379)
T ss_pred             CCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH----C--CCCCCEEEECCHHHHHHHHHHHHHHHC
T ss_conf             8999999999999996589977658999999999999999999982----9--996739992887999999999999867


Q ss_pred             CCCCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCC
Q ss_conf             32232222333323222---222222222222222222322210333100012212201211354210000123333211
Q gi|254780602|r  113 NMGDEVLIPRPYWVSYP---DMVALCGGIPVFVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRAL  189 (400)
Q Consensus       113 ~~Gd~Vlv~~P~y~~y~---~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~k~i~l~nP~NPTG~v~s~~~l~~i  189 (400)
                      .+||+|++..-.++...   ..++..|.++..+|+++++  .+|+++++++++++||++.++.-+|-||.+.+.++   |
T Consensus        84 ~~~d~Ii~s~~eH~a~~~~~~~l~~~g~~v~~~~~~~~g--~id~~~l~~~l~~~T~lvs~~~~sn~tG~i~pv~~---I  158 (379)
T TIGR03402        84 PEKRHIITTAVEHPAVLSLCQHLEKQGYKVTYLPVDEEG--RLDLEELRAAITDDTALVSVMWANNETGTIFPIEE---I  158 (379)
T ss_pred             CCCCEEEEECCHHHHHHHHHHHHHHCCCEEEEEECCCCC--CCCHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHH---H
T ss_conf             999999980131045667999999659889997037898--26426678872678628996125788870178999---9


Q ss_pred             CCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHH-HHHHHHH-CCC
Q ss_conf             12233333201110122110000012233222111233322574146544322344544422110122-6875310-012
Q gi|254780602|r  190 ADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTGLRIGYAAGALSL-IKSMIVL-QGQ  267 (400)
Q Consensus       190 ~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~v~~~~l-i~~l~~~-~~~  267 (400)
                      +++| +++++++++|-+..-    +..+..+..+     +--++..|.-|.+|-.|  +|.+...+++ ++.+..- .+.
T Consensus       159 ~~~~-~~~g~~~~vDa~Q~~----g~~pidv~~~-----~~D~~~~S~hK~~GP~G--~G~Ly~r~~~~~~P~~~Gg~~e  226 (379)
T TIGR03402       159 GEIA-KERGALFHTDAVQAV----GKIPIDLKEM-----NIDMLSLSGHKLHGPKG--VGALYIRKGTRFRPLLRGGHQE  226 (379)
T ss_pred             HHHH-HHCCCEEEEECCCCC----CCCCCCHHHH-----CCCCEECCHHHCCCCCC--EEEEEECCCCCCCCCCCCCCCC
T ss_conf             9999-763988994531124----6646403441-----57721202111368872--5999982676668767888877


Q ss_pred             --CCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH-HHCCCCCEEEECCCCEEEEEECCCCCCCCCCCCCC
Q ss_conf             --22332-222222222223467643222222110000000245-53047760330274089986264102332113322
Q gi|254780602|r  268 --QTSGA-CSIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQ-LQGVPGIRYMIPDGAFYLYPSCQDLIGKKSPSGDV  343 (400)
Q Consensus       268 --~~~~~-~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~~~~~-L~~~~g~~~~~p~g~~y~~~~~~~~~~~~~~~~~~  343 (400)
                        ...+. +.+.-.+...+++-....++......+..++.+.+. |+.++++.+.-|...     +++....    ....
T Consensus       227 ~~~~~GT~n~~~i~gl~~a~~~~~~~~~~~~~~~~~l~~~l~~~ll~~~~~~~i~g~~~~-----r~p~~~~----~~~~  297 (379)
T TIGR03402       227 RGRRAGTENVPGIVGLGKAAELATEHLEEENTRVRALRDRLEAGLLARIPDARLNGDPTK-----RLPNTVN----ISFE  297 (379)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCHHH-----CCCCCEE----ECCC
T ss_conf             776789712999999999999999759999999999999999999850898275478666-----4887303----2369


Q ss_pred             CCCHHHHHHHHHHHCCEEEECCCCCCC-------------------CCEEEEEEE--CCHHHHHHHHHHHHHHHHHCC
Q ss_conf             489899999999873979983502289-------------------972899962--999999999999999998609
Q gi|254780602|r  344 IRTDLDFVNGLLEIEKVAVVQGSSFGH-------------------GPSIRISYA--VSDAILEEACVRIKRFCHSLQ  400 (400)
Q Consensus       344 ~~~~~~~~~~Ll~~~gV~v~pG~~Fg~-------------------~~~iRis~~--~~~e~l~~al~rl~~~l~~l~  400 (400)
                      ..+...+.. +|+++||.+..|+.+..                   .|.||+|++  .++++++..++.|++.++.||
T Consensus       298 ~~~~~~i~~-~L~~~gI~v~~G~~Ca~~~~~ps~vL~a~g~~~~~~~g~iRvS~~~ynT~edId~li~aL~~iv~~lr  374 (379)
T TIGR03402       298 YIEGEAILL-LLDMEGICASSGSACTSGSLEPSHVLRAMGVPHTAAHGSIRFSLSRYNTEEDIDYVLEVLPPIIARLR  374 (379)
T ss_pred             CCCHHHHHH-HHCCCCEEEECCHHCCCCCCCHHHHHHHCCCCHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             989999999-84518929975032159998624999975998333395699973899999999999999999999998


No 116
>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]
Probab=99.88  E-value=3e-22  Score=155.62  Aligned_cols=329  Identities=19%  Similarity=0.203  Sum_probs=215.4

Q ss_pred             CCCEEECCCCCCCCCCCHHHHHHHHHHHHC---CCC--CCCCCC----CCHHHHHHHHHHHHHHCCCCCC-CCCCCCCCC
Q ss_conf             997266565897498899999999999838---875--699877----8989999999986421013333-223323345
Q gi|254780602|r   30 GIDVLCLTAGEPDFDMPENVKYAVVRAMER---GET--KYTAVA----GISPLREAIVEKFRRDNDLHYT-SDQIIVGTG   99 (400)
Q Consensus        30 g~~ii~l~~G~p~~~~p~~i~~a~~~al~~---~~~--~Y~~~~----G~~~lR~aia~~~~~~~g~~~~-~e~I~it~G   99 (400)
                      |++++.|-.+-... .|..+.+++.+....   ..+  .|....    -..+.|++++++++      .+ .++|++|.|
T Consensus        20 ~~~~vylD~aa~~~-~p~~V~~a~~~~~~~~~an~~r~~~~~~~~~t~~~e~aRe~va~~~~------a~~~~eIvft~~   92 (405)
T COG0520          20 GKPLVYLDNAATSQ-KPQAVLDAVAEYYRRYNANVHRGAHTLAEEATDLYEAAREAVARFLN------ADSSDEIVFTRG   92 (405)
T ss_pred             CCCCEECCCCCCCC-CCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC------CCCCCEEEEECC
T ss_conf             67847636765666-78899999999999740245755441279999999999999999819------998772999598


Q ss_pred             CCCCCCCCCCCC---CCCCCCCCCCCCCCC----CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEECC
Q ss_conf             433332222222---332232222333323----2222222222222222222223222103331000122122012113
Q gi|254780602|r  100 AKHVIFNALMAT---VNMGDEVLIPRPYWV----SYPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQAITPKTKWLFLNS  172 (400)
Q Consensus       100 ~~~~l~~~~~~~---~~~Gd~Vlv~~P~y~----~y~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~k~i~l~n  172 (400)
                      ++++|.++..++   ..+||+|++..--++    .+....+..|++++.+|+++++  .++.|+++..++++||++.++.
T Consensus        93 tT~aln~va~~l~~~~~~gdeIv~s~~EH~sn~~pw~~~~~~~Ga~v~~i~~~~~g--~~~~d~~~~~i~~~Tklvais~  170 (405)
T COG0520          93 TTEALNLVARGLGRSLKPGDEIVVSDLEHHSNIVPWQELAKRTGAKVRVIPLDDDG--LLDLDALEKLITPKTKLVALSH  170 (405)
T ss_pred             HHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHCCCEEEEEECCCCC--CCCHHHHHHHCCCCCEEEEEEC
T ss_conf             37999999997024106899899804655200899999998759689998418999--7288999864699944999966


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCC-CCCCCCCCCCCC
Q ss_conf             5421000012333321112233333201110122110000012233222111233322574146544-322344544422
Q gi|254780602|r  173 PSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSK-AYAMTGLRIGYA  251 (400)
Q Consensus       173 P~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK-~~~~~G~RiG~~  251 (400)
                      -+|-||.+.+   +++|+++| +++++++++|-+.+-    +.....+..     .+.-+++.|.-| .+|-+|  +|.+
T Consensus       171 vSn~tG~~~p---v~~I~~la-~~~ga~v~VDaaq~~----~h~~idv~~-----l~~Df~afsgHKwl~gP~G--iGvL  235 (405)
T COG0520         171 VSNVTGTVNP---VKEIAELA-HEHGALVLVDAAQAA----GHLPIDVQE-----LGCDFLAFSGHKWLLGPTG--IGVL  235 (405)
T ss_pred             CCCCCCCCCC---HHHHHHHH-HHCCCEEEEECCCCC----CCCCCCHHH-----CCCCEEEECCCCCCCCCCC--EEEE
T ss_conf             4167554040---99999999-984998999771334----756688556-----1898999767432579985--2999


Q ss_pred             CCHHHHHHHHHHHCCC---------------------CCCCCCCCCCCCC-CCCCCCCCC-CCCCCCCCCCCCCCCHHHH
Q ss_conf             1101226875310012---------------------2233222222222-222346764-3222222110000000245
Q gi|254780602|r  252 AGALSLIKSMIVLQGQ---------------------QTSGACSIAQWAA-VEALNGPQD-FVVNNRKIFEYRRDLCVAQ  308 (400)
Q Consensus       252 v~~~~li~~l~~~~~~---------------------~~~~~~~~~q~a~-~~~l~~~~~-~~~~~~~~~~~~r~~~~~~  308 (400)
                      .+.+++++.+.-....                     ...+.+.+.+..+ .++++..++ -++++.+.-++..+++.+.
T Consensus       236 y~r~~~l~~l~P~~~gg~~~~~~~~~~~~~~~~~p~rfe~gTpn~~~~i~l~aAl~~~~~ig~~~i~~~e~~L~~~~~~~  315 (405)
T COG0520         236 YVRKELLEELEPFLGGGGMIEYVSRDEGVTLAELPLRFEAGTPNIAGAIGLAAALDYLLEIGMEAIEAHERELTEYLLEG  315 (405)
T ss_pred             EECHHHHHHCCCCCCCCCCEEECCCCCCCEECCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             98665584378977788724401445553015641531557843788986999999999857999999999999999999


Q ss_pred             HHCCCCCEEEECC----CCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCC--------CCCEEEE
Q ss_conf             5304776033027----408998626410233211332248989999999987397998350228--------9972899
Q gi|254780602|r  309 LQGVPGIRYMIPD----GAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFG--------HGPSIRI  376 (400)
Q Consensus       309 L~~~~g~~~~~p~----g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg--------~~~~iRi  376 (400)
                      |++++++++..|.    ++.+.| .+.            ..+..+.+..| .+.||++.-|....        .+..+|+
T Consensus       316 L~~~~~v~i~g~~~~~r~~~vsF-~v~------------~~~~~dv~~~L-~~~gI~vr~g~~ca~p~~~~~~~~~~iR~  381 (405)
T COG0520         316 LSELPGVEIYGPPDADRGGIVSF-NVK------------GIHPHDVATLL-DEKGIAVRAGHHCAQPLHRLLGVDATIRA  381 (405)
T ss_pred             HHCCCCEEEECCCCCCCCCEEEE-EEC------------CCCHHHHHHHH-HHCCEEEEECCCCCHHHHHHCCCCCCEEE
T ss_conf             85489849964663467746999-978------------95989999999-86786998256443267875377775799


Q ss_pred             EEE--CCHHHHHHHHHHHHHHH
Q ss_conf             962--99999999999999999
Q gi|254780602|r  377 SYA--VSDAILEEACVRIKRFC  396 (400)
Q Consensus       377 s~~--~~~e~l~~al~rl~~~l  396 (400)
                      ||+  .+.|+++.-++.|+++.
T Consensus       382 S~~~YNt~edid~l~~aL~~~~  403 (405)
T COG0520         382 SLHLYNTEEDVDRLLEALKKAL  403 (405)
T ss_pred             EEECCCCHHHHHHHHHHHHHHH
T ss_conf             9742599999999999999874


No 117
>PRK02948 cysteine desulfurase; Provisional
Probab=99.88  E-value=7.3e-23  Score=159.33  Aligned_cols=324  Identities=13%  Similarity=0.091  Sum_probs=188.8

Q ss_pred             CCCCHHHHHHHHHHHHCCCCC----CCC----CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC---
Q ss_conf             988999999999998388756----998----778989999999986421013333223323345433332222222---
Q gi|254780602|r   43 FDMPENVKYAVVRAMERGETK----YTA----VAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFNALMAT---  111 (400)
Q Consensus        43 ~~~p~~i~~a~~~al~~~~~~----Y~~----~~G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l~~~~~~~---  111 (400)
                      -|+|+.+.+++.+.+.+....    |..    ..=+.+.|+.||+++    |  .++++|++|+|+++++.+++..+   
T Consensus        10 tp~~~~v~~a~~~~~~~~~~N~~s~h~~~~~a~~~~e~aR~~ia~~l----g--a~~~~IvFTsg~Tes~nlai~~~~~~   83 (381)
T PRK02948         10 TPMSEEALQTYQKAASQYFGNESSLHDIGGTASSLLQVCRKTFAEMI----G--GKEQGVYFTSGGTESNYLAIQSLLNA   83 (381)
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHC----C--CCCCCEEEECCHHHHHHHHHHHHHHH
T ss_conf             99999999999999987068985141799999999999999999980----9--99780899288769999999999997


Q ss_pred             -CCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCC
Q ss_conf             -33223222233---33232222222222222222222223222103331000122122012113542100001233332
Q gi|254780602|r  112 -VNMGDEVLIPR---PYWVSYPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLR  187 (400)
Q Consensus       112 -~~~Gd~Vlv~~---P~y~~y~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~k~i~l~nP~NPTG~v~s~~~l~  187 (400)
                       ..+||+|++..   ++-......++..|.++..+|+++++  .+|+++|+++++++|+++.++.-||=||.+.+.+   
T Consensus        84 ~~~~g~~ii~s~~EH~sv~~~~~~l~~~G~~v~~i~~d~~G--~id~~~l~~~l~~~t~LV~v~~asN~tG~i~pi~---  158 (381)
T PRK02948         84 LPQNKKHIITTPMEHASIHSYFQSLESQGYTVTEIPVDKSG--LIRLVDLERAITEDTVLASIQHANSEIGTIQPIA---  158 (381)
T ss_pred             HCCCCCEEEECCCCCCHHHHHHHHHHHCCCEEEEECCCCCC--CCCHHHHHHHCCCCCEEEEEECEEECCCCCCCHH---
T ss_conf             05799989974642200789999999729989996778888--7699999975689946999975020686477588---


Q ss_pred             CCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHH-HHHHHHHC-
Q ss_conf             1112233333201110122110000012233222111233322574146544322344544422110122-68753100-
Q gi|254780602|r  188 ALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTGLRIGYAAGALSL-IKSMIVLQ-  265 (400)
Q Consensus       188 ~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~v~~~~l-i~~l~~~~-  265 (400)
                      +|.++| +++++++++|-+-. +   +..+..+..+     +.-++..|..|.+|..|  +|.+...+++ .+.+..-. 
T Consensus       159 ~I~~~a-~~~g~~~~vDa~Q~-~---g~~~idv~~l-----~~D~~~fS~HK~~GP~G--iG~L~~~~~~~~~~~~~g~~  226 (381)
T PRK02948        159 EIGALL-KKYNVLFHSDCVQT-F---GKLPIDVFEM-----GIDSLSVSAHKIYGPKG--VGAVYINPQVRWKPVFPGTS  226 (381)
T ss_pred             HHHHHH-HHHCCEEEEEHHHH-C---CCCCCCCCCC-----CCCEEEEEHHCCCCCCC--EEEEEECCCCCCCCCCCCCC
T ss_conf             999999-87098798465661-4---6516653446-----77625620000458872--59999878986555668988


Q ss_pred             -CC-CCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCC-CCEEEECCCCEEEEEECCCCCCCCCCCC
Q ss_conf             -12-22332-22222222222346764322222211000000024553047-7603302740899862641023321133
Q gi|254780602|r  266 -GQ-QTSGA-CSIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQGVP-GIRYMIPDGAFYLYPSCQDLIGKKSPSG  341 (400)
Q Consensus       266 -~~-~~~~~-~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~~~~~L~~~~-g~~~~~p~g~~y~~~~~~~~~~~~~~~~  341 (400)
                       .. ...+. +.+...+..++++.....++.....+++-++++.+.|+.++ .+.+....+-     .++.....    .
T Consensus       227 ~e~~~~~GT~nv~gi~~l~~A~~~~~~~~~~~~~~~~~L~~~l~~~l~~~~~~~~~~~~~~~-----~~p~i~~~----~  297 (381)
T PRK02948        227 HEKGFRPGTVNVPGIAAFLTAAENILKNMQEESLRFKELRSYFLEQIQTLPLPIEVEGHSTS-----CLPHIIGV----T  297 (381)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCC-----CCCCEEEE----E
T ss_conf             78976678675999999999999998649999999999999999998547997465688634-----56867887----3


Q ss_pred             CCCCCHHHHHHHHHHHCCEEEECCCCC--------------CC-----CCEEEEEEE--CCHHHHHHHHHHHHHHHHHC
Q ss_conf             224898999999998739799835022--------------89-----972899962--99999999999999999860
Q gi|254780602|r  342 DVIRTDLDFVNGLLEIEKVAVVQGSSF--------------GH-----GPSIRISYA--VSDAILEEACVRIKRFCHSL  399 (400)
Q Consensus       342 ~~~~~~~~~~~~Ll~~~gV~v~pG~~F--------------g~-----~~~iRis~~--~~~e~l~~al~rl~~~l~~l  399 (400)
                      ....+.... ...|+++||.+..|+.+              |.     .+.||+||+  ++.|+++..++.|++..+..
T Consensus       298 ~~~~~~~~~-~~~l~~~gI~v~~GsaCa~~~~~~s~~l~a~g~~~~~a~~~vRvS~g~ynT~eeId~~i~al~~i~~~f  375 (381)
T PRK02948        298 IKGFEGQYT-MLECNRRGIAISTGSACQVGKQEPSKTMLAIGKTYEEAKQFVRFSFGQQTTKDQIDTTIHALETIGNQF  375 (381)
T ss_pred             CCCCCHHHH-HHHCCCCCCEEECCHHHCCCCCCCCHHHHHCCCCHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             388688999-985421681897804527898870089997599878809259997479999999999999999999998


No 118
>PRK05958 8-amino-7-oxononanoate synthase; Reviewed
Probab=99.88  E-value=7.7e-22  Score=153.09  Aligned_cols=334  Identities=17%  Similarity=0.110  Sum_probs=199.7

Q ss_pred             HCCCCEEECCCCC-CCCCCCHHHHHHHHHHHHCCCCCCCCCC---CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf             8699726656589-7498899999999999838875699877---89899999999864210133332233233454333
Q gi|254780602|r   28 SKGIDVLCLTAGE-PDFDMPENVKYAVVRAMERGETKYTAVA---GISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHV  103 (400)
Q Consensus        28 ~~g~~ii~l~~G~-p~~~~p~~i~~a~~~al~~~~~~Y~~~~---G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~  103 (400)
                      -+|+++|+|+..+ -++...|.++++..++++.-.++.+.++   |..++-+.+-+.+.+.+|.   ++-+++++| ..+
T Consensus        36 i~gr~~lnFsSndYLGL~~hp~v~~a~~~a~~~yG~g~~~SRl~~G~~~~h~~LE~~lA~~~g~---e~allf~SG-y~A  111 (387)
T PRK05958         36 VDGRRMLNFASNDYLGLANHPELIAAAQQAARRYGVGSGGSRLVTGNSPAHEALEAELAEWFGA---ERALLFSSG-YAA  111 (387)
T ss_pred             ECCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHCCCCHHHHHHHHHHHHHHCC---CCEEEECCC-HHH
T ss_conf             8997999856654247789999999999999983898865632306869999999999998689---967964552-386


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCC--CCCEEECCCCCCCCCCC
Q ss_conf             3222222233223222233332322222222222222222222232221033310001221--22012113542100001
Q gi|254780602|r  104 IFNALMATVNMGDEVLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQAITPK--TKWLFLNSPSNPSGVVY  181 (400)
Q Consensus       104 l~~~~~~~~~~Gd~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~--~k~i~l~nP~NPTG~v~  181 (400)
                      ...++.++++++|.|++..-.-.....-+++.+++++.++       +-|+++|++.+...  .+.++++.      .+|
T Consensus       112 n~~~i~al~~~~d~ii~D~~~HaSi~dG~~ls~a~~~~f~-------HnD~~~Le~~L~~~~~~~~~iv~e------gvy  178 (387)
T PRK05958        112 NLAVLTALVGKGDLIVSDKLNHASLIDGARLSRAEVRRYP-------HNDVDALEALLAKWRAGRALIVTE------SVF  178 (387)
T ss_pred             HHHHHHHCCCCCCEEEEECCCCHHHHHHHHHCCCCEEEEC-------CCCHHHHHHHHHHCCCCCEEEEEC------CCC
T ss_conf             6656653278997899710046989998872799289968-------999999999997388987599974------665


Q ss_pred             C----CCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf             2----333321112233333201110122110000012233222111233322574146544322344544422110122
Q gi|254780602|r  182 S----QNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTGLRIGYAAGALSL  257 (400)
Q Consensus       182 s----~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~v~~~~l  257 (400)
                      |    ...+.+|+++| ++++++++.||+|+.-+++. ....+........+..|.++||||.|+..|   ||+++++++
T Consensus       179 SMdGd~apL~~i~~L~-~~y~~~L~vDeAH~~Gv~G~-~G~G~~e~~~~~~~vdi~~gTlsKA~gs~G---G~i~g~~~~  253 (387)
T PRK05958        179 SMDGDLAPLAELVALA-RRHGAWLLVDEAHGTGVLGP-QGRGLAEAAGLAGEIVILVGTLGKALGSSG---AAVLGSETL  253 (387)
T ss_pred             CCCCCCCCHHHHHHHH-HHCCEEEEECCHHHCCCCCC-CCCCHHHHHCCCCCCEEEECCCCCCCCCCC---EEEEECHHH
T ss_conf             7788766899999999-97084788426222263379-998489984788886899760544456774---399507899


Q ss_pred             HHHHHHH-CCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEECCCCEEEEEECCCCCC
Q ss_conf             6875310-01222332222222-222223467643222222110000000245530477603302740899862641023
Q gi|254780602|r  258 IKSMIVL-QGQQTSGACSIAQW-AAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQGVPGIRYMIPDGAFYLYPSCQDLIG  335 (400)
Q Consensus       258 i~~l~~~-~~~~~~~~~~~~q~-a~~~~l~~~~~~~~~~~~~~~~~r~~~~~~L~~~~g~~~~~p~g~~y~~~~~~~~~~  335 (400)
                      ++.+... +.+..+...+|.+. ++.++|+--++ -.+.++.+.++.+++.+.|++. |+.+...+.. -+-+-+.+   
T Consensus       254 i~~l~~~a~~~ifStalpP~~~aa~~~al~~i~~-~~~~~~~L~~n~~~~~~~l~~~-g~~~~~s~sp-Iipi~ig~---  327 (387)
T PRK05958        254 IDYLINRARPFIFTTALPPAQAAAARAALRILRE-EPERRERLAALIARLRAGLRAL-GLGLPDSESA-IQPLIVGD---  327 (387)
T ss_pred             HHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHHHHC-CCCCCCCCCC-EEEEEECC---
T ss_conf             9999873902031588877999999999999860-9599999999999998645753-9985899998-79999699---


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCC-CCC--EEEEEEE--CCHHHHHHHHHHHHHHHHH
Q ss_conf             3211332248989999999987397998350228-997--2899962--9999999999999999986
Q gi|254780602|r  336 KKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFG-HGP--SIRISYA--VSDAILEEACVRIKRFCHS  398 (400)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg-~~~--~iRis~~--~~~e~l~~al~rl~~~l~~  398 (400)
                              .....++++.|+ +.||.+.|...=. +.+  -+|+++.  .+++++++.++.|++.++.
T Consensus       328 --------~~~~~~~~~~L~-~~Gi~v~~i~~PtVp~~~~rlRi~i~a~ht~~dId~l~~~l~e~~~~  386 (387)
T PRK05958        328 --------NERALALAAALQ-AQGFWVGAIRPPTVPAGTSRLRITLTAAHTEADIDRLLEALAEALAA  386 (387)
T ss_pred             --------HHHHHHHHHHHH-HCCCEEEEECCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHH
T ss_conf             --------999999999999-77952831789988999844999978779999999999999999950


No 119
>cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.
Probab=99.86  E-value=8.9e-21  Score=146.61  Aligned_cols=326  Identities=18%  Similarity=0.142  Sum_probs=191.5

Q ss_pred             CCEEECCCCC-CCCCCCHHHHHHHHHHHHCCCCCCCCCC---CCH----HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf             9726656589-7498899999999999838875699877---898----9999999986421013333223323345433
Q gi|254780602|r   31 IDVLCLTAGE-PDFDMPENVKYAVVRAMERGETKYTAVA---GIS----PLREAIVEKFRRDNDLHYTSDQIIVGTGAKH  102 (400)
Q Consensus        31 ~~ii~l~~G~-p~~~~p~~i~~a~~~al~~~~~~Y~~~~---G~~----~lR~aia~~~~~~~g~~~~~e~I~it~G~~~  102 (400)
                      +++++|+.-+ -++...|.++++..+++++-.++++.++   |..    +|-+.+|+++    |.    |..++.+.+..
T Consensus         1 r~~l~f~s~dYLgL~~~p~~~~a~~~a~~~~G~g~~~sr~~~G~~~~~~~lE~~la~~~----g~----e~al~~~sG~~   72 (349)
T cd06454           1 KKVLNFCSNDYLGLANHPEVIEAAKEALDKYGVGAGGSRLISGTSDLHEELEEELAEFH----GK----EAALVFSSGYA   72 (349)
T ss_pred             CCEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHH----CC----CEEEEECCHHH
T ss_conf             95899766632478989999999999999739988876736478799999999999986----99----81999557078


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCC---C-CCCEEECCC-CCCC
Q ss_conf             3322222223322322223333232222222222222222222223222103331000122---1-220121135-4210
Q gi|254780602|r  103 VIFNALMATVNMGDEVLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQAITP---K-TKWLFLNSP-SNPS  177 (400)
Q Consensus       103 ~l~~~~~~~~~~Gd~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~---~-~k~i~l~nP-~NPT  177 (400)
                      +...++.+++.+||.|++..-.-......+++.+++++.++       +-|+++|++.+++   + .+.++++.. .+=+
T Consensus        73 an~~~i~~l~~~~d~i~~D~~~H~si~~G~~~s~a~~~~f~-------Hnd~~~L~~~l~~~~~~~~~~~iv~egv~Sm~  145 (349)
T cd06454          73 ANDGVLSTLAGKGDLIISDSLNHASIIDGIRLSGAKKRIFK-------HNDMEDLEKLLREARRPYGKKLIVTEGVYSMD  145 (349)
T ss_pred             HHHHHHHHCCCCCCEEEECCCCCHHHHHHHHCCCCCEEEEC-------CCCHHHHHHHHHHHHCCCCCEEEEECCCCCCC
T ss_conf             77888862057897797415343728863652446479978-------99999999999853225897699965767888


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf             00012333321112233333201110122110000012233222111233322574146544322344544422110122
Q gi|254780602|r  178 GVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTGLRIGYAAGALSL  257 (400)
Q Consensus       178 G~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~v~~~~l  257 (400)
                      |.+.+   +++|.++| ++++++++.||+|+.-+++ .....+........+..+++.||||.|+..|   |++.+++++
T Consensus       146 Gd~ap---L~~l~~l~-~~~~~~livDeAH~~Gv~G-~~G~G~~~~~~~~~~~di~~~tlsKa~G~~G---g~v~g~~~~  217 (349)
T cd06454         146 GDIAP---LPELVDLA-KKYGAILFVDEAHSVGVYG-PHGRGVEEFGGLTDDVDIIMGTLGKAFGAVG---GYIAGSKEL  217 (349)
T ss_pred             CCCCC---HHHHHHHH-HHHCCEEEEECHHHCCCCC-CCCCCHHHHCCCCCCCEEEECCCCCCCCCCC---CEEECCHHH
T ss_conf             77679---89999999-9829789972323317415-8887678865898866799853654346777---124253568


Q ss_pred             HHHHHHHC-CCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEECCCCEEEEEECCCCCC
Q ss_conf             68753100-12223322222-22222223467643222222110000000245530477603302740899862641023
Q gi|254780602|r  258 IKSMIVLQ-GQQTSGACSIA-QWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQGVPGIRYMIPDGAFYLYPSCQDLIG  335 (400)
Q Consensus       258 i~~l~~~~-~~~~~~~~~~~-q~a~~~~l~~~~~~~~~~~~~~~~~r~~~~~~L~~~~g~~~~~p~g~~y~~~~~~~~~~  335 (400)
                      ++.+.... .+..+...++. -.++.++|+.-++ ..+.++.++++.+++.+.|++. |+.+.....+--..+-..    
T Consensus       218 i~~l~~~~~~~i~s~~l~p~~~aa~~~al~~l~~-~~~~~~~L~~~~~~~~~~l~~~-g~~i~~~~~~~i~~~~~~----  291 (349)
T cd06454         218 IDYLRSYARGFIFSTSLPPAVAAAALAALEVLQG-GPERRERLQENVRYLRRGLKEL-GFPVGGSPSHIIPPLIGD----  291 (349)
T ss_pred             HHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHHHC-CCCCCCCCCCCEEEEECC----
T ss_conf             9999861988577777689999999999999863-9588999999999999999976-997579999727999869----


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCC--C--CCEEEEEEE--CCHHHHHHHHHHHHH
Q ss_conf             3211332248989999999987397998350228--9--972899962--999999999999999
Q gi|254780602|r  336 KKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFG--H--GPSIRISYA--VSDAILEEACVRIKR  394 (400)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg--~--~~~iRis~~--~~~e~l~~al~rl~~  394 (400)
                             ......+++++|+ ++||.+.|.. |-  +  ..-+|+++.  .++|++++.++-|++
T Consensus       292 -------~~~~a~~~~~~L~-~~Gi~v~~~~-~Ptvp~~~~~lRi~~sa~ht~edId~li~~l~e  347 (349)
T cd06454         292 -------DPAKAVAFSDALL-ERGIYVQAIR-YPTVPRGTARLRISLSAAHTKEDIDRLLEALKE  347 (349)
T ss_pred             -------CHHHHHHHHHHHH-HCCCEEEEEC-CCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf             -------9999999999998-8796286379-897899983599986877999999999999997


No 120
>TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein; InterPro: IPR010969   This entry describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulphurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N terminus. The function of members of this family are unknown..
Probab=99.84  E-value=1.1e-20  Score=146.06  Aligned_cols=314  Identities=16%  Similarity=0.185  Sum_probs=197.2

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHCCC--CCCCC-------CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             589749889999999999983887--56998-------778989999999986421013333223323345433332222
Q gi|254780602|r   38 AGEPDFDMPENVKYAVVRAMERGE--TKYTA-------VAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFNAL  108 (400)
Q Consensus        38 ~G~p~~~~p~~i~~a~~~al~~~~--~~Y~~-------~~G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l~~~~  108 (400)
                      .+--.||=|++|.++|.+.++...  .+|+.       +.-..|+|+.||+.++    .+ ++.+|++|+.++.||..++
T Consensus         5 nAATtyPKP~ev~~a~~~~~~~~gg~~gRG~~~~~l~~~~~v~EtR~~lA~Lf~----~~-~~~~v~Ft~nAT~aLN~~L   79 (384)
T TIGR01977         5 NAATTYPKPDEVYEAMADFLKNYGGSPGRGRYRLALRASREVEETRELLAKLFN----AP-SKAHVVFTNNATTALNIAL   79 (384)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHC----CC-CCCCEEEECCHHHHHHHHH
T ss_conf             665689973899999999987348756888750345414228899999999848----89-7462784060779999998


Q ss_pred             CC-CCC--CCCCCCCCCCCCCCCCCC-------CCCC-CCCCCCCCCCCCCCCCCHHHHHHCCCCCC-CCCEEECCCCCC
Q ss_conf             22-233--223222233332322222-------2222-22222222222232221033310001221-220121135421
Q gi|254780602|r  109 MA-TVN--MGDEVLIPRPYWVSYPDM-------VALC-GGIPVFVDTQQDDNFQVSPEKLEQAITPK-TKWLFLNSPSNP  176 (400)
Q Consensus       109 ~~-~~~--~Gd~Vlv~~P~y~~y~~~-------~~~~-g~~~~~v~~~~~~~~~~d~~~l~~~i~~~-~k~i~l~nP~NP  176 (400)
                      +. ++.  +||.|++..   ..|-+.       .+.. |.++-.+++++++  .+|+|+|+++++.+ ||++++++-+|=
T Consensus        80 ~Gl~lknr~g~hVi~t~---mEHNsV~RPL~~L~~~~~g~~~~iv~~~~~G--~~~~e~i~~~~~~~kTk~iv~~HaSNV  154 (384)
T TIGR01977        80 KGLILKNREGDHVITTP---MEHNSVLRPLEKLKEERIGVEITIVKCDNEG--LISPERIKRAIKKNKTKLIVVSHASNV  154 (384)
T ss_pred             HCCCCCCCCCCCEEECC---CCHHHHHHHHHHHHHCCCCEEEEEECCCCCC--CCCHHHHHHHCCCCCCCEEEEECHHHH
T ss_conf             43300055999678647---6023664389999735997589986278885--216799998533788300432200301


Q ss_pred             CCCCCCCCCCCCCC-CCCCCCCCCEEECCCCC-CCCCCCCCCCCCCCCCCCCCCCE--EEEECCCCCCC-CCCCCCCCCC
Q ss_conf             00001233332111-22333332011101221-10000012233222111233322--57414654432-2344544422
Q gi|254780602|r  177 SGVVYSQNRLRALA-DVLVRNPHVHIISDDIY-EHIVYRNCQFSNIVNVEPSLYER--TLVVNGVSKAY-AMTGLRIGYA  251 (400)
Q Consensus       177 TG~v~s~~~l~~i~-~~~a~~~~i~ii~De~Y-~~l~~~~~~~~s~~~~~~~~~~~--~i~~~S~SK~~-~~~G~RiG~~  251 (400)
                      ||.+++-||   |. ++ |+++++.+|.|.+= ..+          ..+  ++.+.  -+..++-.|++ |..|  +|-+
T Consensus       155 ~G~ilpiEE---IgR~l-A~e~g~~~~~DAaQtAGv----------~~I--d~~~~~i~~lAF~GHKgLlGP~G--tGGl  216 (384)
T TIGR01977       155 TGTILPIEE---IGREL-AKENGIFFILDAAQTAGV----------IPI--DMEELAIDMLAFTGHKGLLGPQG--TGGL  216 (384)
T ss_pred             CCCCCCHHH---HHHHH-HHHCCCEEEEECCCCCCC----------CHH--CCCHHHCCEEEECCCHHHHCCCC--CEEE
T ss_conf             031125789---99999-986797399832000375----------410--10322067676377522001136--3157


Q ss_pred             CCHHHHHHHHHHHCCC---------------------CCCCCCCCCCCCCCCCCCCCCCCCCCCC-----CCCCCCCCCH
Q ss_conf             1101226875310012---------------------2233222222222222346764322222-----2110000000
Q gi|254780602|r  252 AGALSLIKSMIVLQGQ---------------------QTSGACSIAQWAAVEALNGPQDFVVNNR-----KIFEYRRDLC  305 (400)
Q Consensus       252 v~~~~li~~l~~~~~~---------------------~~~~~~~~~q~a~~~~l~~~~~~~~~~~-----~~~~~~r~~~  305 (400)
                      ...+..-+.+..+..-                     .+.+.+      ++..|...-.|+.+.+     +.=...++.+
T Consensus       217 ~~~e~~~~~l~pl~~GGTGs~S~~~~~P~~~PdrfE~GTLN~p------GI~gL~agik~~~~~gi~~i~~kE~~l~~~l  290 (384)
T TIGR01977       217 IIKEGIKEILKPLKSGGTGSHSALIDQPSELPDRFESGTLNTP------GIAGLNAGIKFIEKIGIANIAKKELKLTEKL  290 (384)
T ss_pred             EEECCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHCCCCHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             8873705674532068875453444577604320114400379------9999988878875644778999999999999


Q ss_pred             HHHHHCCCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCC--------C--CCCEEE
Q ss_conf             245530477603302740899862641023321133224898999999998739799835022--------8--997289
Q gi|254780602|r  306 VAQLQGVPGIRYMIPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSF--------G--HGPSIR  375 (400)
Q Consensus       306 ~~~L~~~~g~~~~~p~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~F--------g--~~~~iR  375 (400)
                      .+.|++.+.+++.-|+       |..+... ..-......|+.+.+..|-++.+|+++.|-.+        |  ..|-||
T Consensus       291 ~~~L~~~~~V~iyG~~-------d~~~~~~-vvSf~~~g~d~~~va~~L~~~~~I~~RtGlHCAPLAH~~~GT~~~Gt~R  362 (384)
T TIGR01977       291 LNGLKEIKKVKIYGPK-------DPAKRVG-VVSFTVEGIDSEEVADILDEKFDIAVRTGLHCAPLAHKTIGTFATGTIR  362 (384)
T ss_pred             HHHCCCCCCEEEECCC-------CHHHCCC-EEEEEECCCCHHHHHHHHHHCCCCEEECCCCCCHHHHHHHCCCCCCEEE
T ss_conf             8740167806762770-------3433267-5899834888778999998618918976766641230353116765388


Q ss_pred             EEEE--CCHHHHHHHHHHHH
Q ss_conf             9962--99999999999999
Q gi|254780602|r  376 ISYA--VSDAILEEACVRIK  393 (400)
Q Consensus       376 is~~--~~~e~l~~al~rl~  393 (400)
                      +|++  .++|+++..++.|.
T Consensus       363 ~S~gyFnt~ee~~~l~~al~  382 (384)
T TIGR01977       363 LSLGYFNTEEEIEKLVEALS  382 (384)
T ss_pred             EECCCCCCHHHHHHHHHHHH
T ss_conf             72787788899999999985


No 121
>PRK07179 hypothetical protein; Provisional
Probab=99.84  E-value=2e-20  Score=144.49  Aligned_cols=330  Identities=12%  Similarity=0.067  Sum_probs=196.9

Q ss_pred             HCCCCEEECCCCC-CCCCCCHHHHHHHHHHHHCCCCCCCC---CCC----CHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf             8699726656589-74988999999999998388756998---778----989999999986421013333223323345
Q gi|254780602|r   28 SKGIDVLCLTAGE-PDFDMPENVKYAVVRAMERGETKYTA---VAG----ISPLREAIVEKFRRDNDLHYTSDQIIVGTG   99 (400)
Q Consensus        28 ~~g~~ii~l~~G~-p~~~~p~~i~~a~~~al~~~~~~Y~~---~~G----~~~lR~aia~~~~~~~g~~~~~e~I~it~G   99 (400)
                      ..|+++|+|+..+ -++.-.|.|++|..+++++-..+.+.   ..|    +.+|-+++|+|+..       ++-+++++ 
T Consensus        51 ~~G~~~i~fsSNdYLGLs~hp~v~~a~~~ai~~~G~g~~~Srl~~G~~~~h~~LE~~LA~~~g~-------e~allf~S-  122 (408)
T PRK07179         51 TPGPDAIILQSNDYLNLSGHPDIIKAQIAALQEYGDGLVMSAVFLHDDSPKPQFEKKLAAFTGF-------ESGLLCQS-  122 (408)
T ss_pred             CCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC-------CCEEEECC-
T ss_conf             8997356857666347889999999999999984999874680316758999999999998689-------92999875-


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEECCCCCCCCC
Q ss_conf             43333222222233223222233332322222222222222222222232221033310001221220121135421000
Q gi|254780602|r  100 AKHVIFNALMATVNMGDEVLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGV  179 (400)
Q Consensus       100 ~~~~l~~~~~~~~~~Gd~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~k~i~l~nP~NPTG~  179 (400)
                      +-.+...++.++++++|.|++-.-.-.....-+++.|++.+.++       +-|+++|++.+....+.++++      =.
T Consensus       123 Gy~AN~g~i~aL~~~~d~I~~D~~~HaSi~dG~rls~a~~~~f~-------HND~~~Le~~L~~~~~~iIv~------eg  189 (408)
T PRK07179        123 GWAANVGLLQTIADPNTPVYIDFFAHMSLWEGVRAAGAQAHPFR-------HNDVDHLRRQIERHGPGIIVV------DS  189 (408)
T ss_pred             HHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCEEEEC-------CCCHHHHHHHHHHCCCCEEEE------EE
T ss_conf             38999999999679998899988778889876761488579947-------999999999998469977999------74


Q ss_pred             CCC----CCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCC-CCEEEEECCCCCCCCCCCCCCCCCCCH
Q ss_conf             012----333321112233333201110122110000012233222111233-322574146544322344544422110
Q gi|254780602|r  180 VYS----QNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSL-YERTLVVNGVSKAYAMTGLRIGYAAGA  254 (400)
Q Consensus       180 v~s----~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~-~~~~i~~~S~SK~~~~~G~RiG~~v~~  254 (400)
                      |||    ...+.+|+++ +++++.+++.||+|+.=+++. ....+.... ++ .+..|.++||||+|+..|   ||++++
T Consensus       190 VfSMdGDiapL~~l~~l-a~~y~a~L~VDEAH~~Gv~G~-~G~G~~~~~-gl~~~vdi~~gTlsKA~G~~G---Gfi~gs  263 (408)
T PRK07179        190 VYSTTGTIAPLVDIVDI-AEEFGCVLVVDESHSLGTHGP-QGAGLVAEL-GLTSRVHFITASLAKAFAGRA---GIITCP  263 (408)
T ss_pred             CCCCCCCCCCHHHHHHH-HHHHCEEEEEECCCEEEEECC-CCCCHHHHC-CCCCCCEEEEEEHHHHHHHCC---CCEECC
T ss_conf             23578876689999999-987267988614350523679-998779984-998787289937178676376---634237


Q ss_pred             HHHHHHHHHHC-CCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEECCCCEEEEEECCC
Q ss_conf             12268753100-12223322222222-22223467643222222110000000245530477603302740899862641
Q gi|254780602|r  255 LSLIKSMIVLQ-GQQTSGACSIAQWA-AVEALNGPQDFVVNNRKIFEYRRDLCVAQLQGVPGIRYMIPDGAFYLYPSCQD  332 (400)
Q Consensus       255 ~~li~~l~~~~-~~~~~~~~~~~q~a-~~~~l~~~~~~~~~~~~~~~~~r~~~~~~L~~~~g~~~~~p~g~~y~~~~~~~  332 (400)
                      +++++-+.... .+..+...+|.+.+ +.++++--++ -.+.|+.+.++.+++.+.|+++ |+.+..++.-. +-+-+.+
T Consensus       264 ~~~id~L~~~ar~~IfStal~P~~~aa~~aal~ii~~-~~~~r~~L~~n~~~~r~~L~~~-G~~i~~s~spI-vpi~~G~  340 (408)
T PRK07179        264 AELAEYFPFVSYPAIFSSTLLPHEIAGLEATLEVIES-ADERRARLHANARFLREGLSEL-GYNIRSSESQI-IALETGS  340 (408)
T ss_pred             HHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHHHHC-CCCCCCCCCCE-EEEECCC
T ss_conf             9999999971877455666789999999999999862-9999999999999999999837-99978999997-9998599


Q ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCC-CC--CEEEEEEE--CCHHHHHHHHHHHHHHHHHC
Q ss_conf             0233211332248989999999987397998350228-99--72899962--99999999999999999860
Q gi|254780602|r  333 LIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFG-HG--PSIRISYA--VSDAILEEACVRIKRFCHSL  399 (400)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg-~~--~~iRis~~--~~~e~l~~al~rl~~~l~~l  399 (400)
                                 ......+.+. |.+.|+.+.+-..=- +.  .-+|+++.  .++++++..++.|++.-+.+
T Consensus       341 -----------~~~a~~~~~~-L~~~Gi~v~~i~~PtVP~g~~rlRislsA~ht~~dId~ll~~l~~~~~e~  400 (408)
T PRK07179        341 -----------ERNTEVLRDA-LEERNVFGAVFCAPATPKNRALIRLSLNADLTKSDLDRVLEVCREARDEV  400 (408)
T ss_pred             -----------HHHHHHHHHH-HHHCCCEEEEECCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHC
T ss_conf             -----------9999999999-99789628416799899998169987487799999999999999999980


No 122
>PRK13392 5-aminolevulinate synthase; Provisional
Probab=99.83  E-value=5.3e-20  Score=141.89  Aligned_cols=330  Identities=15%  Similarity=0.127  Sum_probs=193.1

Q ss_pred             CCCCEEECCCCC-CCCCCCHHHHHHHHHHHHCCCCCCCC---CCCCH----HHHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf             699726656589-74988999999999998388756998---77898----99999999864210133332233233454
Q gi|254780602|r   29 KGIDVLCLTAGE-PDFDMPENVKYAVVRAMERGETKYTA---VAGIS----PLREAIVEKFRRDNDLHYTSDQIIVGTGA  100 (400)
Q Consensus        29 ~g~~ii~l~~G~-p~~~~p~~i~~a~~~al~~~~~~Y~~---~~G~~----~lR~aia~~~~~~~g~~~~~e~I~it~G~  100 (400)
                      +|+++++|+..+ -++.-.|.+++++.+++++--++-+.   ..|..    +|-+.+|+|+    |.   ++-+++.+| 
T Consensus        44 ~g~~~l~f~SNdYLGLs~~p~v~~a~~~a~~~yG~gs~gSrl~~G~~~~h~~LE~~LA~f~----g~---e~allf~SG-  115 (410)
T PRK13392         44 TGKRVTIWCSNDYLGMGQHPDVIGAMVDALDRYGAGAGGTRNISGTSHEHVLLERELADLH----GK---QSALLFTSG-  115 (410)
T ss_pred             CCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHH----CC---CCEEEECCH-
T ss_conf             9938989775666577899999999999999809998775856278799999999999986----99---929997664-


Q ss_pred             CCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCC----CCCCEEECCCC
Q ss_conf             3333222222233--22322223333232222222222222222222223222103331000122----12201211354
Q gi|254780602|r  101 KHVIFNALMATVN--MGDEVLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQAITP----KTKWLFLNSPS  174 (400)
Q Consensus       101 ~~~l~~~~~~~~~--~Gd~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~----~~k~i~l~nP~  174 (400)
                      ..+...++.++++  |+|.|+.-.-.-.....-+++.|++.+.++       +-|+++|++.+..    ++++|+.    
T Consensus       116 y~AN~g~i~aL~~~~~~d~i~~D~l~HaSiidG~rlS~a~~~~f~-------HnD~~~Le~~L~~~~~~~~~~Ivt----  184 (410)
T PRK13392        116 YVSNDAALSTLARLLPNCLILSDALNHASMIEGIRRSGAEKQVWA-------HNDLADLERQLASVDPDRPKLICF----  184 (410)
T ss_pred             HHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHCCCCEEEEC-------CCCHHHHHHHHHHCCCCCCEEEEE----
T ss_conf             788899999982779997999873122889987875589589971-------899899999997566678559997----


Q ss_pred             CCCCCCCC----CCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCC
Q ss_conf             21000012----33332111223333320111012211000001223322211123332257414654432234454442
Q gi|254780602|r  175 NPSGVVYS----QNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTGLRIGY  250 (400)
Q Consensus       175 NPTG~v~s----~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~  250 (400)
                         =.|||    ...+.+|+++| ++|+.+++.||+|+.=+++. ....+.....-..+..|.++||||+|+..|   ||
T Consensus       185 ---EgVfSMdGd~apL~~l~~L~-~~y~a~L~VDeAH~~GvlG~-~GrG~~e~~g~~~~vdi~~gTlsKA~Gs~G---gf  256 (410)
T PRK13392        185 ---ESCYSMDGDFAPMAAICDLA-EKYNAFTYVDEVHAVGLYGP-RGGGIAERDGLMDRIDMFQGTLSKAFGCLG---GY  256 (410)
T ss_pred             ---CCCCCCCCCCCCHHHHHHHH-HHHCCEEEEECCCCCCCCCC-CCCCHHHHCCCCCCCEEEECCCCCCCCCCC---EE
T ss_conf             ---25312478868999999999-98495999613100241358-998779972898766799850654123676---03


Q ss_pred             CCCHHHHHHHHHHHC-CCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEECCCCEEEEE
Q ss_conf             211012268753100-1222332222222-22222346764322222211000000024553047760330274089986
Q gi|254780602|r  251 AAGALSLIKSMIVLQ-GQQTSGACSIAQW-AAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQGVPGIRYMIPDGAFYLYP  328 (400)
Q Consensus       251 ~v~~~~li~~l~~~~-~~~~~~~~~~~q~-a~~~~l~~~~~~~~~~~~~~~~~r~~~~~~L~~~~g~~~~~p~g~~y~~~  328 (400)
                      +++++++++.+.... .+..+..-+|.+. ++.++++.-++ -...++.+..+.+++.+.|.+. |+.+...+.- -+-+
T Consensus       257 v~gs~~~id~l~~~ar~~IfStalpP~~~aa~~~al~~l~~-~~~~r~~L~~~~~~lr~~l~~~-g~~~~~s~s~-Iipi  333 (410)
T PRK13392        257 IAASADLVDFVRSFAPGFIFTTALPPPVVAGARAALRHLKT-SQWERDAHQDRTASLKAKLNAN-GIPVLPSPSH-IVPV  333 (410)
T ss_pred             EECCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHHHHC-CCCCCCCCCC-EEEE
T ss_conf             42373778999873875436667899999999999999871-9588999999999999999867-9984899998-7999


Q ss_pred             ECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCC-CCC--EEEEEEE--CCHHHHHHHHHHHHHHHHHC
Q ss_conf             26410233211332248989999999987397998350228-997--2899962--99999999999999999860
Q gi|254780602|r  329 SCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFG-HGP--SIRISYA--VSDAILEEACVRIKRFCHSL  399 (400)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg-~~~--~iRis~~--~~~e~l~~al~rl~~~l~~l  399 (400)
                      -+.+           ......++.+|+++.||.+.|-..=. +.+  -+|+++.  .++++++..++.|.+.-+.+
T Consensus       334 ~ig~-----------~~~a~~~~~~ll~e~Gi~v~~i~~PtVP~g~~rLRi~lsA~Ht~~dId~l~~~L~~v~~e~  398 (410)
T PRK13392        334 MVGD-----------PEKCKAISDLLMAEHGIYIQPINYPTVPRGTERLRITPSPLHTDEDIDALVAALVAIWREL  398 (410)
T ss_pred             EECC-----------HHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHC
T ss_conf             9799-----------9999999999987599899867888379997449877586689999999999999999980


No 123
>PRK10534 L-threonine aldolase; Provisional
Probab=99.83  E-value=1.5e-20  Score=145.23  Aligned_cols=317  Identities=18%  Similarity=0.228  Sum_probs=200.1

Q ss_pred             EEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             26656589749889999999999983887569987789899999999864210133332233233454333322222223
Q gi|254780602|r   33 VLCLTAGEPDFDMPENVKYAVVRAMERGETKYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFNALMATV  112 (400)
Q Consensus        33 ii~l~~G~p~~~~p~~i~~a~~~al~~~~~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l~~~~~~~~  112 (400)
                      +|||-.-.. -.|.|.+++||.+|- -|.--|+.-+-..+|.+.+|+.+    |.+   .-+++ +.++.+..+++++.|
T Consensus         1 ~id~rSDtv-t~p~~~m~~Am~~A~-~GddvYgeDptv~~Le~~~A~l~----G~e---aalFv-psGTmaN~iAl~~~~   70 (333)
T PRK10534          1 MIDLRSDTV-TRPSRAMLEAMMAAP-VGDDVYGDDPTVNALQDYAAELS----GKE---AALFL-PTGTQANLVALLSHC   70 (333)
T ss_pred             CCCCCCCCC-CCCCHHHHHHHHCCC-CCCCCCCCCHHHHHHHHHHHHHH----CCC---EEEEE-CCCCHHHHHHHHHHC
T ss_conf             924654428-999999999997375-57754576989999999999985----897---18995-787578999999847


Q ss_pred             CCCCCCCCCCCCC-CCCCC--CCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCC------CCCCEEECCCCCCCCCCCCC
Q ss_conf             3223222233332-32222--222222222222222223222103331000122------12201211354210000123
Q gi|254780602|r  113 NMGDEVLIPRPYW-VSYPD--MVALCGGIPVFVDTQQDDNFQVSPEKLEQAITP------KTKWLFLNSPSNPSGVVYSQ  183 (400)
Q Consensus       113 ~~Gd~Vlv~~P~y-~~y~~--~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~------~~k~i~l~nP~NPTG~v~s~  183 (400)
                      +||++|++..-+- ..|+.  ...+.|..+.+++...++  .+++++++..+.+      .++++.+-|.+|  |++||.
T Consensus        71 ~~g~~vi~~~~sHI~~~E~Gg~a~l~g~~~~~i~~~~~g--~~~~~~v~~~i~~~~~h~~~~~lv~lenT~~--G~v~p~  146 (333)
T PRK10534         71 ERGEEYIVGQAAHNYLYEAGGAAVLGSIQPQPIDAAADG--TLPLDKVAAKIKPDDIHFARTRLLSLENTHN--GKVLPR  146 (333)
T ss_pred             CCCCEEEECCCCCCHHCCCCCHHHHCCCCEEEECCCCCC--CCCHHHHHHHCCCCCCCCCCEEEEEEEECCC--CEECCH
T ss_conf             899869875777610114664898769521551478898--2489999986187887667624665540358--853689


Q ss_pred             CCCCCCCCCCCCCCCCEEECCCCCC--CCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCC-CCCCHHHHHHH
Q ss_conf             3332111223333320111012211--00000122332221112333225741465443223445444-22110122687
Q gi|254780602|r  184 NRLRALADVLVRNPHVHIISDDIYE--HIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTGLRIG-YAAGALSLIKS  260 (400)
Q Consensus       184 ~~l~~i~~~~a~~~~i~ii~De~Y~--~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG-~~v~~~~li~~  260 (400)
                      +++++|.++| +++++.+-.|-+=-  -.+..+.++   ..+... . .++++ +|||.++.|   +| .+++++++|++
T Consensus       147 ~el~~i~~~a-~~~gl~vHlDGARl~NA~~a~g~~~---~e~~~~-~-Dsvs~-clsKgLGap---~Gsvl~g~~~~i~~  216 (333)
T PRK10534        147 EYLKEAWEFT-RERNLALHVDGARIFNAVVAYGCEL---KEITQY-C-DSFTI-CLSKGLGTP---VGSLLVGNRDYIKR  216 (333)
T ss_pred             HHHHHHHHHH-HHCCCEEEECHHHHHHHHHHCCCCH---HHHHHH-C-CEEEE-EEECCCCCC---CCEEEECCHHHHHH
T ss_conf             9999999999-9759837623277764465429999---999975-8-98898-740678873---32146468999999


Q ss_pred             HHHHCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEECCCCEEEEEECCCCCCCCC
Q ss_conf             531001222332222222--222223467643222222110000000245530477603302740899862641023321
Q gi|254780602|r  261 MIVLQGQQTSGACSIAQW--AAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQGVPGIRYMIPDGAFYLYPSCQDLIGKKS  338 (400)
Q Consensus       261 l~~~~~~~~~~~~~~~q~--a~~~~l~~~~~~~~~~~~~~~~~r~~~~~~L~~~~g~~~~~p~g~~y~~~~~~~~~~~~~  338 (400)
                      ...++.....++.-....  ++..+|++   ++....+ -.+|...+.+.|+++ |+.+..|+..+ +|+++++.     
T Consensus       217 a~~~RK~~GGgmrQ~g~lAAa~l~aL~~---~~~rl~~-dH~nA~~La~~L~~~-g~~~~~~eTN~-vf~~~~~~-----  285 (333)
T PRK10534        217 AIRWRKMTGGGMRQAGILAAAGLYALKH---NVARLQE-DHDNAAWLAQQLREA-GADVMRQDTNM-LFVRVGEE-----  285 (333)
T ss_pred             HHHHHHHHCCHHHHHHHHHHHHHHHHHC---CHHHHHH-HHHHHHHHHHHHHHC-CCCCCCCCCCE-EEEECCHH-----
T ss_conf             9999998546555899999999999963---9998999-999899999999976-98748997647-99977877-----


Q ss_pred             CCCCCCCCHHHHHHHHHHHCCEEEECCCCCCCCCEEEEEE--ECCHHHHHHHHHHHHHHHHH
Q ss_conf             1332248989999999987397998350228997289996--29999999999999999986
Q gi|254780602|r  339 PSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGHGPSIRISY--AVSDAILEEACVRIKRFCHS  398 (400)
Q Consensus       339 ~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~iRis~--~~~~e~l~~al~rl~~~l~~  398 (400)
                             ...+|.+. ++++||.+..      .+.+|+..  .++++++++.++.+++++.+
T Consensus       286 -------~~~~l~~~-~~~~gv~~~~------~~~vR~Vth~~it~~dv~~~i~~~r~~l~~  333 (333)
T PRK10534        286 -------NAAALGEY-MRERNVLINA------SPIVRLVTHLDVSREQLAEVVAHWRAFLAR  333 (333)
T ss_pred             -------HHHHHHHH-HHHCCEEECC------CCCEEEEEECCCCHHHHHHHHHHHHHHHCC
T ss_conf             -------79999999-9987967579------981899980899999999999999999719


No 124
>PRK13393 5-aminolevulinate synthase; Provisional
Probab=99.83  E-value=7.4e-20  Score=141.02  Aligned_cols=328  Identities=16%  Similarity=0.140  Sum_probs=194.2

Q ss_pred             CCEEECCCCC-CCCCCCHHHHHHHHHHHHCCCCCCC---CCCCCH----HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf             9726656589-7498899999999999838875699---877898----9999999986421013333223323345433
Q gi|254780602|r   31 IDVLCLTAGE-PDFDMPENVKYAVVRAMERGETKYT---AVAGIS----PLREAIVEKFRRDNDLHYTSDQIIVGTGAKH  102 (400)
Q Consensus        31 ~~ii~l~~G~-p~~~~p~~i~~a~~~al~~~~~~Y~---~~~G~~----~lR~aia~~~~~~~g~~~~~e~I~it~G~~~  102 (400)
                      +++|+|+..| -++...|.++++..++++.=-++-+   -..|..    +|-+.+|+|+    |.   ++-+++++| ..
T Consensus        45 r~~i~f~SNdYLGL~~~p~v~~a~~~a~~~yG~gs~~Srl~~G~~~~h~~LE~~LA~~~----g~---e~allf~SG-y~  116 (404)
T PRK13393         45 REVTVWCSNDYLGMGQHPAVLAAMHEALDTCGAGAGGTRNISGTNHYHVLLEAELADLH----GK---EAALLFTSG-YV  116 (404)
T ss_pred             EEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHCCHHHHHHHHHHHHHHH----CC---CCEEEECCH-HH
T ss_conf             47998774344576789999999999999868998766020188799999999999986----99---919998744-88


Q ss_pred             CCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCC----CCCCEEECCCCCC
Q ss_conf             33222222233--22322223333232222222222222222222223222103331000122----1220121135421
Q gi|254780602|r  103 VIFNALMATVN--MGDEVLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQAITP----KTKWLFLNSPSNP  176 (400)
Q Consensus       103 ~l~~~~~~~~~--~Gd~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~----~~k~i~l~nP~NP  176 (400)
                      +...++.++++  |||.|+.-.-.-......+++.+++++.++       +-|+++|++.+..    ++++|++      
T Consensus       117 AN~g~i~aL~~~~~~d~i~~D~l~HaSi~dG~rls~a~~~~f~-------HnD~~~Le~~L~~~~~~~~~lIv~------  183 (404)
T PRK13393        117 SNWAALSTLASRLPGCVILSDELNHASMIEGIRHSRAETRIFR-------HNDPADLERKLSDLDPHAPKLVAF------  183 (404)
T ss_pred             HHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHCCCCEEEEE-------CCCHHHHHHHHHHCCCCCCCEEEE------
T ss_conf             8999999985789997899987545989998885479879982-------799999999998562248808999------


Q ss_pred             CCCCCC----CCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCC
Q ss_conf             000012----3333211122333332011101221100000122332221112333225741465443223445444221
Q gi|254780602|r  177 SGVVYS----QNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTGLRIGYAA  252 (400)
Q Consensus       177 TG~v~s----~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~v  252 (400)
                       =.|||    ...+.+|+++| ++++.++++||+|+.=+++. ....+.....-..+..|.++||||.|+..|   ||++
T Consensus       184 -egVfSMdGDiapL~el~~L~-~~y~a~L~VDeAH~~Gv~G~-~G~G~~e~~gl~~~vdi~~gTfsKA~Gs~G---g~v~  257 (404)
T PRK13393        184 -ESVYSMDGDIAPIAEICDVA-DKHGAMTYLDEVHAVGLYGP-RGGGIAERDGLADRLTIIEGTLAKAFGVVG---GYIT  257 (404)
T ss_pred             -EEECCCCCCCCCHHHHHHHH-HHCCCEEEEECCCCCCCCCC-CCCCHHHHCCCCCCCEEEEEECCCCCCCCC---CEEE
T ss_conf             -65535578856899999999-74094999844320010368-998788873898876289971776433577---5031


Q ss_pred             CHHHHHHHHHHH-CCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEECCCCEEEEEEC
Q ss_conf             101226875310-01222332222222-2222234676432222221100000002455304776033027408998626
Q gi|254780602|r  253 GALSLIKSMIVL-QGQQTSGACSIAQW-AAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQGVPGIRYMIPDGAFYLYPSC  330 (400)
Q Consensus       253 ~~~~li~~l~~~-~~~~~~~~~~~~q~-a~~~~l~~~~~~~~~~~~~~~~~r~~~~~~L~~~~g~~~~~p~g~~y~~~~~  330 (400)
                      +++++++-+... +.+..+.+.+|.+. ++.++++.-++ -...++.+.++..++.+.|++. |+.....++- -+-+-+
T Consensus       258 gs~~~id~L~~~ar~~IfStalpP~~~aa~~~al~~l~~-~~~~r~~L~~n~~~~r~~L~~~-G~~~~~s~s~-Iipi~i  334 (404)
T PRK13393        258 GSAALCDFIRSFASGFIFTTSLPPAVAAGALASIRHLKA-SSAERERHQDRVARLRARLDQA-GVPHMDNPSH-IVPVMV  334 (404)
T ss_pred             CCHHHHHHHHHHCHHHHHCCCCCHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHHHHC-CCCCCCCCCC-EEEEEE
T ss_conf             476889999984728652779889999999999999861-9699999999999999999966-9997899988-799996


Q ss_pred             CCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCC-CCC--EEEEEEE--CCHHHHHHHHHHHHHHHHHC
Q ss_conf             410233211332248989999999987397998350228-997--2899962--99999999999999999860
Q gi|254780602|r  331 QDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFG-HGP--SIRISYA--VSDAILEEACVRIKRFCHSL  399 (400)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg-~~~--~iRis~~--~~~e~l~~al~rl~~~l~~l  399 (400)
                      .+           ......++..|++++||.+.|-..=. +.+  -+|+++.  .++++++..++.|++..++|
T Consensus       335 g~-----------~~~a~~~~~~Ll~~~Gi~v~~i~~PtVP~g~~rLRi~lsA~ht~~did~l~~~L~~v~~~l  397 (404)
T PRK13393        335 GD-----------AVLCKQISDLLLDRYGIYVQPINYPTVPRGTERLRITPSPLHTDADIEHLVQALSEIWARL  397 (404)
T ss_pred             CC-----------HHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHC
T ss_conf             99-----------9999999999986189899988898589997359987688799999999999999999983


No 125
>PRK09064 5-aminolevulinate synthase; Validated
Probab=99.82  E-value=2.9e-19  Score=137.42  Aligned_cols=328  Identities=16%  Similarity=0.170  Sum_probs=191.9

Q ss_pred             CCCEEECCCCC-CCCCCCHHHHHHHHHHHHCCCCCCCC---CCCCHH----HHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf             99726656589-74988999999999998388756998---778989----99999998642101333322332334543
Q gi|254780602|r   30 GIDVLCLTAGE-PDFDMPENVKYAVVRAMERGETKYTA---VAGISP----LREAIVEKFRRDNDLHYTSDQIIVGTGAK  101 (400)
Q Consensus        30 g~~ii~l~~G~-p~~~~p~~i~~a~~~al~~~~~~Y~~---~~G~~~----lR~aia~~~~~~~g~~~~~e~I~it~G~~  101 (400)
                      ++++++|+..+ -++.-.|.++++..+++++-.++-+.   ..|..+    |-+.+|+|+    |.   ++-+++.+| -
T Consensus        44 ~r~~~~FsSNdYLGLs~~p~v~~a~~~a~~~~G~gs~gSrl~~G~~~~h~~LE~~LA~~~----g~---e~allf~SG-y  115 (406)
T PRK09064         44 AREVTVWCSNDYLGMGQHPKVIEAMHEALDRCGAGAGGTRNISGTNHYHVELERELADLH----GK---EAALVFTSG-Y  115 (406)
T ss_pred             CEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHH----CC---CCEEEECCH-H
T ss_conf             869998465443577799999999999999848998777704058799999999999985----88---858997741-7


Q ss_pred             CCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCC----CCCCEEECCCCC
Q ss_conf             3332222222332--2322223333232222222222222222222223222103331000122----122012113542
Q gi|254780602|r  102 HVIFNALMATVNM--GDEVLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQAITP----KTKWLFLNSPSN  175 (400)
Q Consensus       102 ~~l~~~~~~~~~~--Gd~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~----~~k~i~l~nP~N  175 (400)
                      .+...++.++++.  +|.|+.-.-.-.....-+++.+++++.++       +-|+++|++.+..    ++|+|++     
T Consensus       116 ~AN~g~i~aL~~~~p~~~i~~D~l~HASiidG~rls~a~~~~f~-------HND~~~Le~~L~~~~~~~~~iIvt-----  183 (406)
T PRK09064        116 VSNDATLSTLAKLIPGCVIFSDELNHASMIEGIRRSGAEKHIFR-------HNDVAHLEELLAAADPDRPKLIAF-----  183 (406)
T ss_pred             HHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHCCCCEEEEC-------CCCHHHHHHHHHHCCCCCCEEEEE-----
T ss_conf             88899999985679996899814233248999875599589947-------999899999998377789709999-----


Q ss_pred             CCCCCCC----CCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCC
Q ss_conf             1000012----333321112233333201110122110000012233222111233322574146544322344544422
Q gi|254780602|r  176 PSGVVYS----QNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTGLRIGYA  251 (400)
Q Consensus       176 PTG~v~s----~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~  251 (400)
                        =.+||    ...+.+|+++| ++++.+++.||+|+.=+++. ....+.....-..+..+.++||||.|+..|   ||+
T Consensus       184 --EgVfSMdGDiapL~~l~~l~-~~y~a~L~VDeAH~~Gv~G~-~G~G~~e~~g~~~~vdi~~gTfsKA~Gs~G---gfv  256 (406)
T PRK09064        184 --ESVYSMDGDIAPIAEICDLA-DKYNAMTYLDEVHAVGMYGP-RGGGIAERDGLMDRIDIIEGTLAKAFGVMG---GYI  256 (406)
T ss_pred             --EECCCCCCCCCCHHHHHHHH-HHHCCEEEEECCCCCCCCCC-CCCCHHHHCCCCCCCEEEEEECCCCCCCCC---EEE
T ss_conf             --70001678765799999999-86095999962210220368-887739872986667079921665235775---043


Q ss_pred             CCHHHHHHHHHHHC-CCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEECCCCE-EEEE
Q ss_conf             11012268753100-1222332222222-2222234676432222221100000002455304776033027408-9986
Q gi|254780602|r  252 AGALSLIKSMIVLQ-GQQTSGACSIAQW-AAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQGVPGIRYMIPDGAF-YLYP  328 (400)
Q Consensus       252 v~~~~li~~l~~~~-~~~~~~~~~~~q~-a~~~~l~~~~~~~~~~~~~~~~~r~~~~~~L~~~~g~~~~~p~g~~-y~~~  328 (400)
                      ++++++++-+.... .+..+...++.+. ++.++++.-++ -.+.++.+.++.+++.+.|++. |+.+...+.-. -++ 
T Consensus       257 ~gs~~~id~L~~~ar~~IfStalpp~~~aa~~~al~~l~~-~~~~r~~L~~n~~~~r~~l~~~-G~~~~~s~spIipi~-  333 (406)
T PRK09064        257 AGSASLIDAVRSYAPGFIFTTSLPPAIAAAALASIRHLKE-SNEERERHQERAAKLKASLDAA-GIPVMPNPSHIVPVI-  333 (406)
T ss_pred             CCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHHHHC-CCCCCCCCCCEEEEE-
T ss_conf             1788999999871853002678999999999999999870-9077899999999999867744-997479999879999-


Q ss_pred             ECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCC-CCC--EEEEEEE--CCHHHHHHHHHHHHHHHHHC
Q ss_conf             26410233211332248989999999987397998350228-997--2899962--99999999999999999860
Q gi|254780602|r  329 SCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFG-HGP--SIRISYA--VSDAILEEACVRIKRFCHSL  399 (400)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg-~~~--~iRis~~--~~~e~l~~al~rl~~~l~~l  399 (400)
                       +.+           ......+++.|++++||.+.|-..=. +.+  -+||++.  .++++++..++.|++..+++
T Consensus       334 -ig~-----------~~~~~~~~~~Ll~~~Gi~v~~I~~PtVP~g~~rLRi~l~a~ht~edid~l~~~L~ev~~~~  397 (406)
T PRK09064        334 -VGD-----------PEKCKKASDRLLEEHGIYVQPINYPTVPRGTERLRITPTPLHTDEMIDHLVEALVEVWARL  397 (406)
T ss_pred             -ECC-----------HHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHC
T ss_conf             -599-----------9999999999998689878108899889998469988686699999999999999999980


No 126
>PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional
Probab=99.81  E-value=2.9e-19  Score=137.36  Aligned_cols=329  Identities=16%  Similarity=0.149  Sum_probs=194.1

Q ss_pred             CCCCEEECCCCC-CCCCCCHHHHHHHHHHHHCCCCCCCC---CCCC----HHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf             699726656589-74988999999999998388756998---7789----899999999864210133332233233454
Q gi|254780602|r   29 KGIDVLCLTAGE-PDFDMPENVKYAVVRAMERGETKYTA---VAGI----SPLREAIVEKFRRDNDLHYTSDQIIVGTGA  100 (400)
Q Consensus        29 ~g~~ii~l~~G~-p~~~~p~~i~~a~~~al~~~~~~Y~~---~~G~----~~lR~aia~~~~~~~g~~~~~e~I~it~G~  100 (400)
                      .|+++|+|+..+ -++...|.++++..++++.--.+-+.   ..|.    .+|-+++|+|+    |.   ++-+++.+| 
T Consensus        40 dG~~~lnf~SndYLGL~~~p~v~~a~~~a~~~yG~gs~~Srl~~G~~~~h~~LE~~lA~~~----g~---e~allf~SG-  111 (395)
T PRK06939         40 DGKEVINFCANNYLGLANHPELIAAAKAALDSHGFGMASVRFICGTQDLHKELEQKLAKFL----GT---EDAILYSSC-  111 (395)
T ss_pred             CCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHH----CC---CCEEEECCH-
T ss_conf             8938999776765578899899999999999729998776857478399999999999986----99---949997552-


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCC----CC-CCEEECCCCC
Q ss_conf             333322222223322322223333232222222222222222222223222103331000122----12-2012113542
Q gi|254780602|r  101 KHVIFNALMATVNMGDEVLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQAITP----KT-KWLFLNSPSN  175 (400)
Q Consensus       101 ~~~l~~~~~~~~~~Gd~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~----~~-k~i~l~nP~N  175 (400)
                      ..+...++.+++.++|.|+.-.-.-.....-+++.+++.+.++       +-|+++|++.+..    .. +.++++    
T Consensus       112 y~aN~~~i~aL~~~~d~i~~D~l~HaSiidG~~ls~a~~~~f~-------HnD~~~Le~~L~~~~~~~~~~~~ivt----  180 (395)
T PRK06939        112 FDANGGLFETLLGKEDAIISDALNHASIIDGVRLCKAKRYRYA-------NNDMADLEAQLKEAKEAGARHKLIAT----  180 (395)
T ss_pred             HHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCEEEEC-------CCCHHHHHHHHHHHHHCCCCEEEEEE----
T ss_conf             7767889999647998899845635889999986589479966-------89999999999960021586289999----


Q ss_pred             CCCCCCCC----CCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCC-CCCCCCCCC
Q ss_conf             10000123----3332111223333320111012211000001223322211123332257414654432-234454442
Q gi|254780602|r  176 PSGVVYSQ----NRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAY-AMTGLRIGY  250 (400)
Q Consensus       176 PTG~v~s~----~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~-~~~G~RiG~  250 (400)
                        =.|||-    ..+.+|+++| ++++.+++.||+|+.=+++. ....+.....-..+..|.++||||.| +..|   ||
T Consensus       181 --egVfSMdGDiapL~~l~~L~-~~y~a~L~vDeAH~~GvlG~-~G~G~~e~~gl~~~vdi~~gTlsKA~~G~~G---gf  253 (395)
T PRK06939        181 --DGVFSMDGDIANLPEICDLA-DKYDALVMVDDSHAVGFLGE-NGRGTVEHCGVMDRVDIITGTLGKALGGASG---GY  253 (395)
T ss_pred             --ECCCCCCCCCCCHHHHHHHH-HHHCEEEEEECCCCEEEECC-CCCCHHHHCCCCCCCEEEECCCHHHHHCCCC---CE
T ss_conf             --66777787601599999999-97273798614300003458-9986799809998868997732766624765---14


Q ss_pred             CCCHHHHHHHHHHH-CCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEECCCCEEEEE
Q ss_conf             21101226875310-0122233222222-222222346764322222211000000024553047760330274089986
Q gi|254780602|r  251 AAGALSLIKSMIVL-QGQQTSGACSIAQ-WAAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQGVPGIRYMIPDGAFYLYP  328 (400)
Q Consensus       251 ~v~~~~li~~l~~~-~~~~~~~~~~~~q-~a~~~~l~~~~~~~~~~~~~~~~~r~~~~~~L~~~~g~~~~~p~g~~y~~~  328 (400)
                      +++++++++.+... +++..+.+.+|.+ .++.++++--++ -.+.++.++++.+++.+.|++. |+.+...+.-. +-+
T Consensus       254 v~g~~~~i~~l~~~~r~~ifStalpp~~~aa~~~al~~~~~-~~~~r~~L~~n~~~~r~~l~~~-g~~~~~s~spI-~pi  330 (395)
T PRK06939        254 TAGKKEVIDWLRQRSRPYLFSNSLAPAIVAASIKVLELLEE-SDELRDRLWENARYFREGMTAA-GFTLGPGEHPI-IPV  330 (395)
T ss_pred             EECCHHHHHHHHHHCHHHHCCCCCCHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHC-CCCCCCCCCCE-EEE
T ss_conf             51667889999984712211579987999999999999874-9599999999999999999967-99868999997-999


Q ss_pred             ECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCC--CC--CEEEEEEE--CCHHHHHHHHHHHHHHHHHC
Q ss_conf             26410233211332248989999999987397998350228--99--72899962--99999999999999999860
Q gi|254780602|r  329 SCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFG--HG--PSIRISYA--VSDAILEEACVRIKRFCHSL  399 (400)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg--~~--~~iRis~~--~~~e~l~~al~rl~~~l~~l  399 (400)
                      -+.+           .....+++..|++ .|+.+.+-. |-  +.  .-+|+++.  .++++++..++.|++..+.|
T Consensus       331 ~iG~-----------~~~a~~~~~~L~~-~Gi~v~~ir-~PtVp~g~~rlRi~lta~ht~~did~lv~~l~~v~~~l  394 (395)
T PRK06939        331 MLGD-----------AKLAQEFADRLLE-EGVYVIGFS-FPVVPKGQARIRTQMSAAHTKEQLDRAIDAFEKVGKEL  394 (395)
T ss_pred             EECC-----------HHHHHHHHHHHHH-CCCEEEEEC-CCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHC
T ss_conf             9699-----------9999999999997-797482078-99889898569988787799999999999999999963


No 127
>PRK08249 cystathionine gamma-synthase; Provisional
Probab=99.80  E-value=6.1e-19  Score=135.44  Aligned_cols=226  Identities=15%  Similarity=0.176  Sum_probs=145.3

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----CCCCCC
Q ss_conf             5699877898999999998642101333322332334543333222222233223222233332322222----222222
Q gi|254780602|r   62 TKYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDM----VALCGG  137 (400)
Q Consensus        62 ~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l~~~~~~~~~~Gd~Vlv~~P~y~~y~~~----~~~~g~  137 (400)
                      .+|--++..-+.++++.+.+...-|    .+.-++++.+..||..++.+++++||+|++++..|..-...    +...|.
T Consensus        54 ~g~~YsR~~nPT~~~lE~~la~LEg----~~~a~~~~SGmaAis~~l~~ll~~Gd~vv~~~~~YggT~~l~~~~l~~~Gi  129 (398)
T PRK08249         54 PGHIYSRNTNPTVQALEAKVKELEG----AEAATSFSTGMAAISNTLYTFLSPGDRVVSIKDTYGGTNKIFEEFLPRMGV  129 (398)
T ss_pred             CCCEEECCCCHHHHHHHHHHHHHHC----CCEEEEECCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHCCCCE
T ss_conf             8951408988659999999999829----970899647899999999997189998998189843799999976015986


Q ss_pred             CCCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCC
Q ss_conf             22222222223222103331000122122012113542100001233332111223333320111012211000001223
Q gi|254780602|r  138 IPVFVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQF  217 (400)
Q Consensus       138 ~~~~v~~~~~~~~~~d~~~l~~~i~~~~k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~  217 (400)
                      ++.+++.       .|+++++++++++||+||+-+|.|||-.+.+   +++|+++ ++++++.+++|..+.-=.+    .
T Consensus       130 ~v~fvd~-------~d~~~~~~ai~~~Tklv~~EtpsNP~l~v~D---i~~ia~i-A~~~g~~~vVDNTfatP~~----~  194 (398)
T PRK08249        130 DVTLCET-------GDHEQIEREIAKGCDLLYLETPTNPTLKITD---IRRLSAA-AHEVGALVVVDNTFATPIN----Q  194 (398)
T ss_pred             EEEEECC-------CCHHHHHHHCCCCCEEEEEECCCCCCCEEEC---HHHHHHH-HHHCCCEEEEECCCCHHHC----C
T ss_conf             9998799-------9869999855888618998448999746664---7999999-9874996998477420312----7


Q ss_pred             CCCCCCCCCCCCEEEEECCCCCCCCCCCCC-CCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             322211123332257414654432234454-4422110122687531001222332222222222223467643222222
Q gi|254780602|r  218 SNIVNVEPSLYERTLVVNGVSKAYAMTGLR-IGYAAGALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGPQDFVVNNRK  296 (400)
Q Consensus       218 ~s~~~~~~~~~~~~i~~~S~SK~~~~~G~R-iG~~v~~~~li~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~  296 (400)
                      .++ .+  +   --|++.|.||..+--|== .|.+++++++++++...+.....++++...+.+...|+.    +.-..+
T Consensus       195 ~Pl-~~--G---aDivvhS~TKyi~GHsDvlgGvv~~~~~~~~~l~~~~~~~G~~lsP~~a~L~~RGL~T----L~lRm~  264 (398)
T PRK08249        195 NPL-AL--G---ADLVVHSATKFLGGHADALGGVVCGPEALMAQVYHYREINGATLDPFAAYLILRGMKT----LALRVR  264 (398)
T ss_pred             CCC-CC--C---CCEEEECCCCEECCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCC----HHHHHH
T ss_conf             821-15--7---9879972662003687635105608899999999999704887891778998646897----999999


Q ss_pred             CCCCCCCCHHHHHHCCCCCE
Q ss_conf             11000000024553047760
Q gi|254780602|r  297 IFEYRRDLCVAQLQGVPGIR  316 (400)
Q Consensus       297 ~~~~~r~~~~~~L~~~~g~~  316 (400)
                      +-.++...+.+.|++.|.+.
T Consensus       265 r~~~nA~~vA~~L~~hp~V~  284 (398)
T PRK08249        265 QQQENAMALAEYLQTEPLVE  284 (398)
T ss_pred             HHHHHHHHHHHHHHHCCCCC
T ss_conf             99889999999998399807


No 128
>cd06502 TA_like Low-specificity threonine aldolase (TA). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I).  TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.
Probab=99.79  E-value=4.4e-19  Score=136.31  Aligned_cols=312  Identities=15%  Similarity=0.120  Sum_probs=193.9

Q ss_pred             CCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             88999999999998388756998778989999999986421013333223323345433332222222332232222333
Q gi|254780602|r   44 DMPENVKYAVVRAMERGETKYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFNALMATVNMGDEVLIPRP  123 (400)
Q Consensus        44 ~~p~~i~~a~~~al~~~~~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l~~~~~~~~~~Gd~Vlv~~P  123 (400)
                      .|.|.+++||.+|- .|.-.|+...-..+|.+.+++.+    |    .+.+++.++++.+...++.++++||++|++..-
T Consensus         9 ~p~p~m~~A~~~A~-~gd~~yg~D~~~~~le~~~a~l~----g----~eaa~f~~sGT~aN~~al~~~~~~~~~vi~~~~   79 (338)
T cd06502           9 GPTPEMLEAMAAAN-VGDDVYGEDPTTAKLEARAAELF----G----KEAALFVPSGTAANQLALAAHTQPGGSVICHET   79 (338)
T ss_pred             CCCHHHHHHHHCCC-CCCCCCCCCHHHHHHHHHHHHHH----C----CCEEEEECCCCHHHHHHHHHHCCCCCEEEEECC
T ss_conf             89999999998063-67866678989999999999984----8----982998078418999999985699975885046


Q ss_pred             CC-CCCCCC--CCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCC-------CCCCEEECCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             32-322222--22222222222222223222103331000122-------122012113542100001233332111223
Q gi|254780602|r  124 YW-VSYPDM--VALCGGIPVFVDTQQDDNFQVSPEKLEQAITP-------KTKWLFLNSPSNPSGVVYSQNRLRALADVL  193 (400)
Q Consensus       124 ~y-~~y~~~--~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~-------~~k~i~l~nP~NPTG~v~s~~~l~~i~~~~  193 (400)
                      +- ..|+.-  ..+.|++++.++..  ++ .++++++++.+++       ++++|.+.|++| .|.+|+.+++++|.++|
T Consensus        80 aHi~~~E~g~~~~~~G~~~~~~~~~--~g-~l~~~~i~~~i~~~~~~h~~~~~lv~ient~e-~G~v~~~~el~~i~~~a  155 (338)
T cd06502          80 AHIYTDEAGAPEFLSGVKLLPVPGE--NG-KLTPEDLEAAIRPRDDIHFPPPSLVSLENTTE-GGTVYPLDELKAISALA  155 (338)
T ss_pred             CCEEEECCCCHHHHCCCEEEEEECC--CC-CCCHHHHHHHHCCCCCCCCCCCEEEEEEECCC-CCEECCHHHHHHHHHHH
T ss_conf             7145653773998749625643389--99-73899999963156886466520799873128-96312799999999999


Q ss_pred             CCCCCCEEECCCCCCC--CCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCC-CCHHHHHHHHHHHCCCCCC
Q ss_conf             3333201110122110--000012233222111233322574146544322344544422-1101226875310012223
Q gi|254780602|r  194 VRNPHVHIISDDIYEH--IVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTGLRIGYA-AGALSLIKSMIVLQGQQTS  270 (400)
Q Consensus       194 a~~~~i~ii~De~Y~~--l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~-v~~~~li~~l~~~~~~~~~  270 (400)
                       +++++.+-.|.+--.  ++..+..   ...+... . .++++ ++||..++|+   |.+ ++++++++.+..++.....
T Consensus       156 -~~~gl~lH~DGARl~nA~~a~g~~---~~~~~~~-~-Dsvs~-~~sKglgap~---gavl~g~~~~i~~a~~~rK~~Gg  225 (338)
T cd06502         156 -KENGLPLHLDGARLANAAAALGVA---LKTYKSG-V-DSVSF-CLSKGGGAPV---GAVVVGNRDFIARARRRRKQAGG  225 (338)
T ss_pred             -HHCCCEEEECCCCEECEEECCCCC---HHHHHHH-C-CEEEE-ECCCCCCCCC---CEEEECCHHHHHHHHHHHHHHCC
T ss_conf             -974972665365300445415999---8998641-8-78999-6656677743---24787788999999999986475


Q ss_pred             CCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCHH
Q ss_conf             32222--2222222234676432222221100000002455304776033027408998626410233211332248989
Q gi|254780602|r  271 GACSI--AQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQGVPGIRYMIPDGAFYLYPSCQDLIGKKSPSGDVIRTDL  348 (400)
Q Consensus       271 ~~~~~--~q~a~~~~l~~~~~~~~~~~~~~~~~r~~~~~~L~~~~g~~~~~p~g~~y~~~~~~~~~~~~~~~~~~~~~~~  348 (400)
                      ++...  .-.+++.+|++ ..|++. ...-.++.+.+.+.|+++++. ...++-.+ ++++.....       .....-.
T Consensus       226 ~mrq~g~lAAa~~~~L~~-~~~~~~-l~~dh~~A~~La~~l~~~~~~-~~~~etni-v~~~~~~~n-------~~~~~~~  294 (338)
T cd06502         226 GMRQSGFLAAAGLAALEN-DLWLRR-LRHDHEMARRLAEALEELGGL-ESEVQTNI-VLLDPVEAN-------AVFVELS  294 (338)
T ss_pred             CHHHHHHHHHHHHHHHHC-CHHHHH-HHHHHHHHHHHHHHHHHCCCC-CCCCCCCE-EEEECCCCC-------HHHHHHH
T ss_conf             364599999999999854-837899-999999999999999867997-66665775-898327541-------8898746


Q ss_pred             HHHHHHHHHCCEEEECCCCCCCCCEEEEEEE--CCHHHHHHHHHHHHH
Q ss_conf             9999999873979983502289972899962--999999999999999
Q gi|254780602|r  349 DFVNGLLEIEKVAVVQGSSFGHGPSIRISYA--VSDAILEEACVRIKR  394 (400)
Q Consensus       349 ~~~~~Ll~~~gV~v~pG~~Fg~~~~iRis~~--~~~e~l~~al~rl~~  394 (400)
                      +++..+ .+.|+.+.+   ++ .+.+|+.+.  ++++++++.++.|++
T Consensus       295 ~~~~~~-~~~g~~~~~---~~-~~~vR~Vt~~~~t~~dvd~~i~~ik~  337 (338)
T cd06502         295 KEAIER-RGEGVLFYA---WG-EGGVRFVTHWDTTEEDVDELLSALKA  337 (338)
T ss_pred             HHHHHH-HHCCEEEEE---CC-CCEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf             999999-968969994---69-99289998899999999999999962


No 129
>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]
Probab=99.79  E-value=8e-20  Score=140.80  Aligned_cols=322  Identities=16%  Similarity=0.142  Sum_probs=193.9

Q ss_pred             CCCCHHHHHHHHHHHHCC------CCCCC--CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC--C
Q ss_conf             988999999999998388------75699--8778989999999986421013333223323345433332222222--3
Q gi|254780602|r   43 FDMPENVKYAVVRAMERG------ETKYT--AVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFNALMAT--V  112 (400)
Q Consensus        43 ~~~p~~i~~a~~~al~~~------~~~Y~--~~~G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l~~~~~~~--~  112 (400)
                      -|+-|.++++|...+..-      .+.|+  ......+.|+.||+-+      .++|++|++|+|++++..+++...  .
T Consensus        11 Tp~~~~v~~~m~~~~~~~fgNPsS~H~~G~~A~~~ve~AR~~iA~ll------ga~~~eIiFTSG~TEsnNlaI~g~~~a   84 (386)
T COG1104          11 TPVDPEVLEAMLPYLTEVFGNPSSLHSFGREARKAVEEAREQIAKLL------GADPEEIIFTSGATESNNLAIKGAALA   84 (386)
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH------CCCCCEEEEECCCCHHHHHHHHHHHHH
T ss_conf             88989999999999875318961155757999999999999999983------999780899569847777999864876


Q ss_pred             C----CCCCCCCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCC
Q ss_conf             3----22322223333232222222---2222222222222232221033310001221220121135421000012333
Q gi|254780602|r  113 N----MGDEVLIPRPYWVSYPDMVA---LCGGIPVFVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNR  185 (400)
Q Consensus       113 ~----~Gd~Vlv~~P~y~~y~~~~~---~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~k~i~l~nP~NPTG~v~s~~~  185 (400)
                      .    .|.+|++..---+.....++   ..|..+.++|.+.++  .+|+++|+++++++|.++-+..-||=||++.+-++
T Consensus        85 ~~~~~~~~HIIts~iEH~aVl~~~~~Le~~g~~Vtyl~v~~~G--~v~~e~L~~al~~~T~LVSim~aNnE~G~IQpI~e  162 (386)
T COG1104          85 YRNAQKGKHIITSAIEHPAVLNTCRYLERQGFEVTYLPVDSNG--LVDLEQLEEALRPDTILVSIMHANNETGTIQPIAE  162 (386)
T ss_pred             HHCCCCCCEEEECCCCCHHHHHHHHHHHHCCCEEEEECCCCCC--EECHHHHHHHCCCCCEEEEEEECCCCEEECCCHHH
T ss_conf             4235689858875543499999999998669757996888897--28799999863888459999850268201120999


Q ss_pred             CCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHH-HHH---
Q ss_conf             3211122333332011101221100000122332221112333225741465443223445444221101226-875---
Q gi|254780602|r  186 LRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTGLRIGYAAGALSLI-KSM---  261 (400)
Q Consensus       186 l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~v~~~~li-~~l---  261 (400)
                         |.++| ++++++..+|.+-.   + |+-+..+..+     .-.+...|--|.+|.-|  +|.+...+.+. ..+   
T Consensus       163 ---i~~i~-k~~~i~fHvDAvQa---~-Gkipi~~~~~-----~vD~ls~SaHK~~GpkG--iGaLyv~~~~~~~p~i~G  227 (386)
T COG1104         163 ---IGEIC-KERGILFHVDAVQA---V-GKIPIDLEEL-----GVDLLSFSAHKFGGPKG--IGALYVRPGVRLEPLIHG  227 (386)
T ss_pred             ---HHHHH-HHCCCEEEEEHHHH---C-CCEECCCCCC-----CCCEEEEEHHHCCCCCC--EEEEEECCCCCCCCEEEC
T ss_conf             ---99999-97598179761332---5-7600460215-----76568731121369984--279998799873744604


Q ss_pred             ----HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCC-CCCEEEECCCCEEEEEECCCCCCC
Q ss_conf             ----310012223322222222222234676432222221100000002455304-776033027408998626410233
Q gi|254780602|r  262 ----IVLQGQQTSGACSIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQGV-PGIRYMIPDGAFYLYPSCQDLIGK  336 (400)
Q Consensus       262 ----~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~~~~~L~~~-~g~~~~~p~g~~y~~~~~~~~~~~  336 (400)
                          ...++ .+-+++.+  .+...+++...+.++.....++.-|+.+.+.|.+. |.+.+......     .++.....
T Consensus       228 GgQE~g~Rs-GTenv~~I--vg~~~A~~~a~~~~~~~~~~~~~lr~~l~~~l~~~~p~~~~~g~~~~-----rlP~~~~~  299 (386)
T COG1104         228 GGQERGLRS-GTENVPGI--VGFGKAAEIAVEELEEENARLRKLRDRLEDGLLEIIPDVYLNGDDEP-----RLPNILNF  299 (386)
T ss_pred             CCCCCCCCC-CCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCC-----CCCCEEEE
T ss_conf             767899788-87557999--99999999999877888999999999999999850996898688545-----78986899


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCCC-------------------CEEEEEEE--CCHHHHHHHHHHHHHH
Q ss_conf             21133224898999999998739799835022899-------------------72899962--9999999999999999
Q gi|254780602|r  337 KSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGHG-------------------PSIRISYA--VSDAILEEACVRIKRF  395 (400)
Q Consensus       337 ~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~-------------------~~iRis~~--~~~e~l~~al~rl~~~  395 (400)
                      ..    .....+.+ ...|+.+||++..|+++...                   +.||+||+  +++++++.+++.+++.
T Consensus       300 ~f----~gv~gE~l-l~~L~~~gI~vStGSACsS~~~~pShVL~AmG~~~e~a~~siR~S~g~~tt~eei~~~~~~l~~~  374 (386)
T COG1104         300 SF----PGVEGESL-LLALDLAGIAVSTGSACSSGSLEPSHVLRAMGISEELAHGSIRFSLGRFTTEEEIDAAAEALKEI  374 (386)
T ss_pred             EE----CCCCHHHH-HHHCCCCCEEEECCCCCCCCCCCCCHHHHHCCCCHHHHCCCEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf             96----89757899-98610408687336434589987149999809996883724899737999899999999999999


Q ss_pred             HHHCC
Q ss_conf             98609
Q gi|254780602|r  396 CHSLQ  400 (400)
Q Consensus       396 l~~l~  400 (400)
                      ++.||
T Consensus       375 i~~lr  379 (386)
T COG1104         375 IKRLR  379 (386)
T ss_pred             HHHHH
T ss_conf             99986


No 130
>PRK07503 methionine gamma-lyase; Provisional
Probab=99.79  E-value=1.9e-18  Score=132.43  Aligned_cols=234  Identities=15%  Similarity=0.176  Sum_probs=143.7

Q ss_pred             HHHHHHCCCCCCCCCC-CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-
Q ss_conf             9999838875699877-89899999999864210133332233233454333322222223322322223333232222-
Q gi|254780602|r   53 VVRAMERGETKYTAVA-GISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPD-  130 (400)
Q Consensus        53 ~~~al~~~~~~Y~~~~-G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l~~~~~~~~~~Gd~Vlv~~P~y~~y~~-  130 (400)
                      +.+.......+|--++ |.| .++++.+.+...-|    .+.-++++.+..||..++.+++++||+|++++..|..-.. 
T Consensus        46 ~~~~~~~~~~g~~YsR~~nP-T~~~lE~~la~LEg----~~~a~~~sSGmaAi~~~l~~~l~~Gdhiv~~~~~YGgt~~l  120 (403)
T PRK07503         46 GAACFAGEEAGHFYSRISNP-TLALLEQRMASLEG----GEAGLALASGMGAITATLWTLLRPGDEVIVGRTLYGCTFAF  120 (403)
T ss_pred             HHHHHCCCCCCCEECCCCCH-HHHHHHHHHHHHHC----CCEEEEECCHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHH
T ss_conf             98762687679513089885-69999999999849----96488862789999999999659999899768875328999


Q ss_pred             ---CCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCC
Q ss_conf             ---22222222222222222322210333100012212201211354210000123333211122333332011101221
Q gi|254780602|r  131 ---MVALCGGIPVFVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIY  207 (400)
Q Consensus       131 ---~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y  207 (400)
                         .+...|.++.+++.       -|+++++++++++||+||+-+|.|||..+.+   +++|+++ ++++++++++|..+
T Consensus       121 ~~~~l~~~Gi~~~~vd~-------~d~~~~~~ai~~~Tkli~~Etp~NP~l~v~D---i~~ia~i-A~~~g~~~vVDNTf  189 (403)
T PRK07503        121 LHHGLGEFGVKVRHVDL-------TDAKALKAAISEKTRMIYFETPANPNMQLVD---IAAVVEA-ARGHDALVVVDNTY  189 (403)
T ss_pred             HHHHHHHCCEEEEEECC-------CCHHHHHHHCCCCCEEEEEECCCCCCCEEEC---HHHHHHH-HHHCCCEEEEECCC
T ss_conf             98446317759998689-------8989999751867329999527999866305---7999999-98658859983675


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCC-CCCCCCCCHHHHHHHHH--HHCCCCCCCCCCCCCCCCCCCC
Q ss_conf             10000012233222111233322574146544322344-54442211012268753--1001222332222222222223
Q gi|254780602|r  208 EHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTG-LRIGYAAGALSLIKSMI--VLQGQQTSGACSIAQWAAVEAL  284 (400)
Q Consensus       208 ~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~~~G-~RiG~~v~~~~li~~l~--~~~~~~~~~~~~~~q~a~~~~l  284 (400)
                      .-=.+    ..++ .+  +   --|++.|.||.++--| .=.|.++++++.+.+++  .++.....++++...+.++..|
T Consensus       190 atP~~----~~Pl-~~--G---aDivvhS~TKYi~GHsD~l~G~v~~~~~~~~~~r~~~~~~~~G~~lsP~da~L~lRGL  259 (403)
T PRK07503        190 CTPYL----QRPL-EL--G---ADLVVHSATKYLSGHGDITAGLVVGGKALVDRIRLEGLKDMTGAVLSPHDASLLMRGL  259 (403)
T ss_pred             CCCCC----CCHH-HC--C---CCEEEEECCEEECCCCCEEEEEEECCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCC
T ss_conf             45140----1613-31--8---9889995450313787605579972617889999999987428868868889986467


Q ss_pred             CCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCE
Q ss_conf             46764322222211000000024553047760
Q gi|254780602|r  285 NGPQDFVVNNRKIFEYRRDLCVAQLQGVPGIR  316 (400)
Q Consensus       285 ~~~~~~~~~~~~~~~~~r~~~~~~L~~~~g~~  316 (400)
                      +.    +.-..+.-.++...+.+.|++.|.++
T Consensus       260 ~T----L~lRm~~~~~nA~~lA~~L~~hp~V~  287 (403)
T PRK07503        260 KT----LALRMDRHCANAQQVAEFLARQPAVE  287 (403)
T ss_pred             CC----HHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             75----99999999999999999997489955


No 131
>cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold.  In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface.
Probab=99.78  E-value=8.9e-19  Score=134.42  Aligned_cols=318  Identities=14%  Similarity=0.136  Sum_probs=188.9

Q ss_pred             CCHHHHHHHHHHHH------C--CCC-CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             89999999999983------8--875-69987789899999999864210133332233233454333322222223322
Q gi|254780602|r   45 MPENVKYAVVRAME------R--GET-KYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFNALMATVNMG  115 (400)
Q Consensus        45 ~p~~i~~a~~~al~------~--~~~-~Y~~~~G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l~~~~~~~~~~G  115 (400)
                      .+++.++|+.+-=+      .  +.+ .+.. +-..+|-+.+|+|+    |    -|...+++|++.|.+.++.++|+||
T Consensus        13 l~~~a~~a~~~~gdgysvcd~c~~~ld~~~~-P~i~efe~~aAefl----G----~d~A~~V~Ggt~Gnqa~i~t~c~~G   83 (361)
T cd06452          13 LTPEARKALIEWGDGYSVCDFCRGRLDEIEK-PPIKDFHHDLAEFL----G----MDEARVTPGAREGKFAVMHSLCEKG   83 (361)
T ss_pred             CCHHHHHHHHHHCCCCCHHHHCCCCCCCCCC-CCHHHHHHHHHHHC----C----CCEEEEECCCCHHHHHHHHHHHCCC
T ss_conf             8999999999867864714520565334769-98899999999871----9----9669994685208999999984799


Q ss_pred             CCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCC------C-CCCEEECCCCCCCCCCCCCCCCC
Q ss_conf             322223333-232222222222222222222223222103331000122------1-22012113542100001233332
Q gi|254780602|r  116 DEVLIPRPY-WVSYPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQAITP------K-TKWLFLNSPSNPSGVVYSQNRLR  187 (400)
Q Consensus       116 d~Vlv~~P~-y~~y~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~------~-~k~i~l~nP~NPTG~v~s~~~l~  187 (400)
                      |+||+..-+ |..| ..+.+.|++++++|......|.++++.+++.|.+      + +++++++   ||+|..-...+++
T Consensus        84 D~VIv~~naH~S~~-~a~~laG~~~~~v~~~~~~~~~i~pe~~~~~Iee~~~e~g~~p~Lilit---~~dy~yG~~~dl~  159 (361)
T cd06452          84 DWVVVDGLAHYTSY-VAAERAGLNVREVPNTGHPEYHITPEGYAEVIEEVKDEFGKPPALALLT---HVDGNYGNLHDAK  159 (361)
T ss_pred             CEEEECCCCHHHHH-HHHHHCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEE---CCCCCCCCCCCHH
T ss_conf             88985575128899-8888638469995677685665188999999999998618996499996---6787736631379


Q ss_pred             CCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf             11122333332011101221100000122332221112333225741465443223445444221101226875310012
Q gi|254780602|r  188 ALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTGLRIGYAAGALSLIKSMIVLQGQ  267 (400)
Q Consensus       188 ~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~v~~~~li~~l~~~~~~  267 (400)
                      +|+++| ++|++.++.|+||..=.+    +.+...+  +   --+++.|.||+++.++ .+|.+.+.++.++.+.+....
T Consensus       160 ~I~~ia-h~y~iPvlvD~A~~~g~l----pv~a~~~--g---aD~v~~s~hK~~~a~~-p~gvL~~~~~~~~~v~R~~~~  228 (361)
T cd06452         160 KIAKVC-HEYGVPLLLNGAYTVGRM----PVSGKEL--G---ADFIVGSGHKSMAASA-PIGVLATTEEWADIVFRTSQM  228 (361)
T ss_pred             HHHHHH-HHCCCCEEECCCCCCCCC----CCCHHHC--C---CCEEEEECCCCCCCCC-CEEEEEECCHHHHHHHHHCCC
T ss_conf             999999-985996897154224757----9875450--7---9689986565553457-437885050678888741101


Q ss_pred             -------CCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEE--ECCCCEEEEEECCCCCCC
Q ss_conf             -------223322--222222222234676432222221100000002455304776033--027408998626410233
Q gi|254780602|r  268 -------QTSGAC--SIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQGVPGIRYM--IPDGAFYLYPSCQDLIGK  336 (400)
Q Consensus       268 -------~~~~~~--~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~~~~~L~~~~g~~~~--~p~g~~y~~~~~~~~~~~  336 (400)
                             +..|.+  .++ .++.+.+....+-+... +.--++.+++.+.|++++|+.+.  .|..--..+.+-+.+.  
T Consensus       229 ~~~K~~~~Lg~t~~~~~~-~~lmAS~~~~~~~v~~~-~eev~~ar~~~~el~kI~G~~~~ge~p~~~dl~~~dt~~~~--  304 (361)
T cd06452         229 FKIKEVELLGCTLRGAPL-VTLMASFPHVKERVKRW-DEEVEKARWFVAELEKIEGIKQLGEKPKNHDLMFFETPSFD--  304 (361)
T ss_pred             CHHHHHHHHCCCCCCCHH-HHHHCCCHHHHHHHHHH-HHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCEEECCCCCE--
T ss_conf             104577874678655179-99980729999999877-78999999999998428453121557776774561478632--


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHCCEEE-ECCCCCCCCCEEEE-EEECCHHHHHHHHHHHHHHH
Q ss_conf             21133224898999999998739799-83502289972899-96299999999999999999
Q gi|254780602|r  337 KSPSGDVIRTDLDFVNGLLEIEKVAV-VQGSSFGHGPSIRI-SYAVSDAILEEACVRIKRFC  396 (400)
Q Consensus       337 ~~~~~~~~~~~~~~~~~Ll~~~gV~v-~pG~~Fg~~~~iRi-s~~~~~e~l~~al~rl~~~l  396 (400)
                       ...........+|.+.| ++.||.. .||.    .+.+.+ +|+.++|+++.-++.|++-.
T Consensus       305 -~~~~~~~~~G~~L~~~L-~~rgI~~~~~g~----t~~~~~~tyG~t~e~i~~l~~a~keI~  360 (361)
T cd06452         305 -EIAKKHKRRGYFLYSEL-KKRGIHGIKPGL----TRYFKLSTYGLTWEQVEYVVDAFKEIA  360 (361)
T ss_pred             -EEEECCCCCCCHHHHHH-HHCCCEEECCCC----CCEEEEEEECCCHHHHHHHHHHHHHHH
T ss_conf             -44104786500699999-876976871685----337999995168889999999999975


No 132
>TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative; InterPro: IPR010962    Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). PLP is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination , , . PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors . Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy .   PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalyzed reactions, enzymatic and non-enzymatic .   This entry contains a number of enzyme families:  Serine palmitoyltransferase Glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase) 5-aminolevulinic acid synthase 8-amino-7-oxononanoate synthase    All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions.; GO: 0016740 transferase activity, 0030170 pyridoxal phosphate binding.
Probab=99.78  E-value=8e-18  Score=128.62  Aligned_cols=324  Identities=20%  Similarity=0.193  Sum_probs=205.8

Q ss_pred             CCCCEEECCCCC-CCCCCCHHHHHHHHHHHHCCCCCCCCC-------CCCHHH----HHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf             699726656589-749889999999999983887569987-------789899----99999986421013333223323
Q gi|254780602|r   29 KGIDVLCLTAGE-PDFDMPENVKYAVVRAMERGETKYTAV-------AGISPL----REAIVEKFRRDNDLHYTSDQIIV   96 (400)
Q Consensus        29 ~g~~ii~l~~G~-p~~~~p~~i~~a~~~al~~~~~~Y~~~-------~G~~~l----R~aia~~~~~~~g~~~~~e~I~i   96 (400)
                      .|+.||+|+..| -.|...|.+++|.++++++    |+-.       .|..++    -+.+|+| +   +   +..-|++
T Consensus        31 nG~~vinLsSNNYLGlA~hp~Lk~aA~~a~~~----yGvGAGAVRTIaGTl~lH~eLE~~LA~F-K---~---teAAl~f   99 (392)
T TIGR01825        31 NGKKVINLSSNNYLGLASHPRLKEAAKEAIQQ----YGVGAGAVRTIAGTLELHEELEEKLAKF-K---K---TEAALVF   99 (392)
T ss_pred             CCEEEEECCCCCCCCCCCCHHHHHHHHHHHHH----CCCCCCCHHHHHHHHHHHHHHHHHHHHH-C---C---CCEEEHH
T ss_conf             88578740435545546887689999999986----5962241210433778999999998755-3---8---2011010


Q ss_pred             CCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCC------C
Q ss_conf             34543333222222233223--2222333323222222---22222222222222232221033310001221------2
Q gi|254780602|r   97 GTGAKHVIFNALMATVNMGD--EVLIPRPYWVSYPDMV---ALCGGIPVFVDTQQDDNFQVSPEKLEQAITPK------T  165 (400)
Q Consensus        97 t~G~~~~l~~~~~~~~~~Gd--~Vlv~~P~y~~y~~~~---~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~------~  165 (400)
                      -+| -....-++.+++++||  -||=.+   -+|.+++   ++.+++.+.|.       +.|+++|++.++++      -
T Consensus       100 qSG-F~~N~GvlSa~L~k~ddG~v~SdE---LNHASIIDG~RLtkA~k~~y~-------H~dm~DL~~~l~e~~~~Gqy~  168 (392)
T TIGR01825       100 QSG-FNTNQGVLSALLRKGDDGIVLSDE---LNHASIIDGLRLTKAKKKIYK-------HVDMDDLERVLRENVEEGQYK  168 (392)
T ss_pred             HCC-HHHHHHHHHHHHCCCCCEEEEECC---CCHHHHHHCCCCCCCCEEEEE-------CCCHHHHHHHHHHCCCCCCCC
T ss_conf             312-237799998762358871587200---020345504223788568984-------598458999997160337544


Q ss_pred             CCEEECCCCCCCCCCCC----CCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCC-CCCCEEEEECCCCCC
Q ss_conf             20121135421000012----3333211122333332011101221100000122332221112-333225741465443
Q gi|254780602|r  166 KWLFLNSPSNPSGVVYS----QNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEP-SLYERTLVVNGVSKA  240 (400)
Q Consensus       166 k~i~l~nP~NPTG~v~s----~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~-~~~~~~i~~~S~SK~  240 (400)
                      +-++++.     | |+|    ..-|-+|+|+ |+++|.++.+||||..=+.++ .-.....-.. +..+..|-++++||.
T Consensus       169 ~~l~vTD-----G-VFSMDGdvApLp~iVE~-Ae~Yda~~yVDDAHGsGVlGe-~GrGtV~HFGL~y~~v~~qvGTLSKA  240 (392)
T TIGR01825       169 KKLIVTD-----G-VFSMDGDVAPLPEIVEL-AEKYDALVYVDDAHGSGVLGE-KGRGTVKHFGLEYDKVDIQVGTLSKA  240 (392)
T ss_pred             CEEEEEC-----C-EEECCCCCCCCCHHHHH-HHHCCCEEEEECCCCCCCCCC-CCCCEEECCCCCCCCEEEEECCHHHH
T ss_conf             3689966-----5-04256787887323346-324595799863346644477-88713530375416467885552232


Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHH-HCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEE
Q ss_conf             22344544422110122687531-00122233222222-22222234676432222221100000002455304776033
Q gi|254780602|r  241 YAMTGLRIGYAAGALSLIKSMIV-LQGQQTSGACSIAQ-WAAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQGVPGIRYM  318 (400)
Q Consensus       241 ~~~~G~RiG~~v~~~~li~~l~~-~~~~~~~~~~~~~q-~a~~~~l~~~~~~~~~~~~~~~~~r~~~~~~L~~~~g~~~~  318 (400)
                      ||.=|   ||+.+++++++-|.. .+-+.+|..-.|.. .|+.+|++.-++ -.+..+++-.|-+++.+.|.++ |+..-
T Consensus       241 ~GvvG---GY~AG~~~lidyL~~~aRPFLFSta~~Pa~~~A~~~Av~~l~~-~~~l~~kLW~Nt~ylk~~L~~L-Gydl~  315 (392)
T TIGR01825       241 IGVVG---GYVAGSKELIDYLKARARPFLFSTALPPAVVAALIEAVDVLQE-SPELMEKLWDNTRYLKAGLSKL-GYDLG  315 (392)
T ss_pred             HCCCC---CCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHHHHHHH-CCCCC
T ss_conf             22566---4234888999999862898601257880789999999998707-9314777678899999876761-64114


Q ss_pred             ECCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCC--CCCE--EEEEEE--CCHHHHHHHHHHH
Q ss_conf             027408998626410233211332248989999999987397998350228--9972--899962--9999999999999
Q gi|254780602|r  319 IPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFG--HGPS--IRISYA--VSDAILEEACVRI  392 (400)
Q Consensus       319 ~p~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg--~~~~--iRis~~--~~~e~l~~al~rl  392 (400)
                      .++-           +......++ -....||.++|++++||.+. +-.|-  +.+-  ||.-.+  -+.|+|++|++.+
T Consensus       316 ~S~t-----------PItPv~~Gd-e~~A~efS~rL~~~yGvFa~-sivFPTVp~g~ARiR~~~tA~HTkd~L~~al~ay  382 (392)
T TIGR01825       316 ESET-----------PITPVLIGD-EKVAQEFSRRLLDEYGVFAQ-SIVFPTVPRGTARIRNIPTAEHTKDDLDQALDAY  382 (392)
T ss_pred             CCCC-----------CCCCEEECC-CHHHHHHHHHHHHHCCEEEE-EEECCCCCCCCCCCCCCCCHHCCHHHHHHHHHHH
T ss_conf             7668-----------612458765-15689999987775290899-8421656698842124656130266799999999


Q ss_pred             HHHHHHCC
Q ss_conf             99998609
Q gi|254780602|r  393 KRFCHSLQ  400 (400)
Q Consensus       393 ~~~l~~l~  400 (400)
                      ++.-+.++
T Consensus       383 e~~Gk~l~  390 (392)
T TIGR01825       383 EKVGKELG  390 (392)
T ss_pred             HHHHHHHC
T ss_conf             98678725


No 133
>PRK06767 methionine gamma-lyase; Provisional
Probab=99.78  E-value=5e-18  Score=129.87  Aligned_cols=230  Identities=14%  Similarity=0.193  Sum_probs=142.7

Q ss_pred             CCCCCCC-CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----CCC
Q ss_conf             7569987-78989999999986421013333223323345433332222222332232222333323222222----222
Q gi|254780602|r   61 ETKYTAV-AGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDMV----ALC  135 (400)
Q Consensus        61 ~~~Y~~~-~G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l~~~~~~~~~~Gd~Vlv~~P~y~~y~~~~----~~~  135 (400)
                      ..+|.-+ .|.| .++++.+.+....|    .+.-++++.+..||..++.+++++||+|++++..|..-...+    ...
T Consensus        50 ~~~y~Y~R~~nP-T~~~le~~la~LEg----g~~a~~~sSGmaAi~~~ll~~l~~Gd~vv~~~~~Yg~T~~l~~~~~~~~  124 (386)
T PRK06767         50 DPSYIYSRLGNP-TVKLFEERMAVLEG----GEEALAFGSGMAAISATLIGFLKAGDHIICSNGLYGCTYGFLEVLEEKF  124 (386)
T ss_pred             CCCCEECCCCCH-HHHHHHHHHHHHHC----CCEEEEECCHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHHC
T ss_conf             679503389886-79999999999849----9716885278999999997307999989983798223466999988873


Q ss_pred             CCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCC
Q ss_conf             22222222222232221033310001221220121135421000012333321112233333201110122110000012
Q gi|254780602|r  136 GGIPVFVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNC  215 (400)
Q Consensus       136 g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~  215 (400)
                      |.++.+++.       -|.++++++++++||+||+=+|.|||-.+.+   +++|+++ ++++++++++|..+.--.+   
T Consensus       125 gI~~~~~d~-------~~~~~~~~~i~~~Tklv~~EspsNP~l~v~D---i~~i~~~-A~~~g~~~vvDNT~atP~~---  190 (386)
T PRK06767        125 MITHSFCDM-------ETEADIENKIRPNTKLIFVETPINPTMKLID---LKQVIRV-AKRNGLLVIVDNTFCSPYL---  190 (386)
T ss_pred             CEEEEEECC-------CCHHHHHHHCCCCCEEEEEECCCCCCCCCCC---HHHHHHH-HHHCCCEEEEECCCCCCCC---
T ss_conf             758999689-------8889999756888259999779998767127---9999998-6006734997457642200---


Q ss_pred             CCCCCCCCCCCCCCEEEEECCCCCCCCCCC-CCCCCCCCHHHHHH-HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             233222111233322574146544322344-54442211012268-7531001222332222222222223467643222
Q gi|254780602|r  216 QFSNIVNVEPSLYERTLVVNGVSKAYAMTG-LRIGYAAGALSLIK-SMIVLQGQQTSGACSIAQWAAVEALNGPQDFVVN  293 (400)
Q Consensus       216 ~~~s~~~~~~~~~~~~i~~~S~SK~~~~~G-~RiG~~v~~~~li~-~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~  293 (400)
                       +.++ .+  +   --|++.|.||.++--| .=.|.++++.+.+. .+...+......+++...+.+...|+.    +.-
T Consensus       191 -~~Pl-~~--G---aDivihS~TKYi~GHsD~l~G~vv~~~~~~~~~~~~~~~~~G~~~sp~~a~l~~rGl~T----L~l  259 (386)
T PRK06767        191 -QRPL-EL--G---CDAVVHSATKYIGGHGDVVAGVTICKTRALAEKIRPMRKDIGGIMAPFDAWLLLRGLKT----LAV  259 (386)
T ss_pred             -CCCC-CC--C---CCEEEEECCCCCCCCCCCEEEEEEECHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCC----HHH
T ss_conf             -1544-36--7---97899714640047766031388616799999999999841787893477898626787----899


Q ss_pred             CCCCCCCCCCCHHHHHHCCCCCEE-EEC
Q ss_conf             222110000000245530477603-302
Q gi|254780602|r  294 NRKIFEYRRDLCVAQLQGVPGIRY-MIP  320 (400)
Q Consensus       294 ~~~~~~~~r~~~~~~L~~~~g~~~-~~p  320 (400)
                      ..++-.++...+.+.|++.|.++. .-|
T Consensus       260 Rm~~~~~nA~~lA~~L~~hp~V~~V~yP  287 (386)
T PRK06767        260 RMDRHCDNAEKIVSFLKNHDAVEGVWYP  287 (386)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCCEEECC
T ss_conf             9999999999999999639983758796


No 134
>TIGR03235 DNA_S_dndA cysteine desulfurase DndA. This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.
Probab=99.78  E-value=1.7e-19  Score=138.83  Aligned_cols=289  Identities=15%  Similarity=0.121  Sum_probs=173.6

Q ss_pred             CCCCHHHHHHHHHHHHCCCCCCC-CCCC-----------CHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             98899999999999838875699-8778-----------98999999998642101333322332334543333222222
Q gi|254780602|r   43 FDMPENVKYAVVRAMERGETKYT-AVAG-----------ISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFNALMA  110 (400)
Q Consensus        43 ~~~p~~i~~a~~~al~~~~~~Y~-~~~G-----------~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l~~~~~~  110 (400)
                      -|+|+.|++++.+.+.+.   |+ |..+           +.+.|+.||+++    |  .++++|++|+|+++++.+++..
T Consensus         8 tp~~~~v~~~~~~~~~~~---~~Np~s~~h~~g~~a~~~le~aR~~ia~~l----g--a~~~eiiFTsg~Tes~nl~i~g   78 (354)
T TIGR03235         8 TPVDPEVAEVMLPFLLEE---FGNPGSRTHEHGHNAKKAVERARKQVAEAL----G--AQTKEVIFTSGATESNNIAILG   78 (354)
T ss_pred             CCCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHHHHHHHHHHHHH----C--CCCCCEEEECCHHHHHHHHHHH
T ss_conf             989999999999999866---879730312899999999999999999980----9--9967789968837999999999


Q ss_pred             CC----CCCCCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEECCCCCCCCCCCCC
Q ss_conf             23----322322223333232222---22222222222222222322210333100012212201211354210000123
Q gi|254780602|r  111 TV----NMGDEVLIPRPYWVSYPD---MVALCGGIPVFVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQ  183 (400)
Q Consensus       111 ~~----~~Gd~Vlv~~P~y~~y~~---~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~k~i~l~nP~NPTG~v~s~  183 (400)
                      +.    ++||+|++..--.+....   .++..|.++.++|.++++  .+|+++++++++++|+++.+..-||=||++.+.
T Consensus        79 ~~~~~~~~g~~ii~s~~EH~svl~~~~~l~~~G~~v~~~~vd~~G--~id~~~l~~~l~~~t~lvsi~~~nnetG~i~pi  156 (354)
T TIGR03235        79 LARAHENKGKHIITTAIEHPAILEPARALERNGFTVTYLEVDESG--RVSVEELADAIRDDTLLVSIMHVNNETGSLQPI  156 (354)
T ss_pred             HHHHHHCCCCEEEECHHHHHHHHHHHHHHHHCCCEEEEECCCCCC--CCCHHHHHHHHCCCCEEEEEECCCCCCCCCCCH
T ss_conf             998502699999981003044799999999649689995557898--287799998726897799998875666763889


Q ss_pred             CCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHH--H
Q ss_conf             33321112233333201110122110000012233222111233322574146544322344544422110122687--5
Q gi|254780602|r  184 NRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTGLRIGYAAGALSLIKS--M  261 (400)
Q Consensus       184 ~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~v~~~~li~~--l  261 (400)
                      ++   |+++| ++++++++.|.+..-    +.-...+...     .--+...|..|.+|..|  +|.+...+++...  +
T Consensus       157 ~~---i~~~~-~~~g~~~~vDa~Q~~----g~~~id~~~~-----~~D~~s~S~HK~~GP~G--iG~L~vr~~~~~~~~l  221 (354)
T TIGR03235       157 RE---IAELC-EAREVFFHSDAAQVV----GKITVDLERD-----HIDLISLSGHKAYGPKG--IGALYIRKRGKPKAPL  221 (354)
T ss_pred             HH---HHHHH-HCCCCEEEEECHHCC----CCCCCCHHHH-----CCCEEEEECCCCCCCCC--EEEEEEECCCCCCCCC
T ss_conf             99---98865-225641562500115----8755577884-----99737631000348871--4999980466766664


Q ss_pred             HHHC----CC--CCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH-CCCCCEEEECCCCEEEEEECCCC
Q ss_conf             3100----12--22332-22222222222346764322222211000000024553-04776033027408998626410
Q gi|254780602|r  262 IVLQ----GQ--QTSGA-CSIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQ-GVPGIRYMIPDGAFYLYPSCQDL  333 (400)
Q Consensus       262 ~~~~----~~--~~~~~-~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~~~~~L~-~~~g~~~~~p~g~~y~~~~~~~~  333 (400)
                      ..+.    +.  ...+. +.+.-.+..++++......++.....+..++.+.+.|+ .++++.+.-+...     .++..
T Consensus       222 ~Pl~~GGgqe~g~r~GT~nv~~i~g~~~A~~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~~v~i~g~~~~-----r~p~i  296 (354)
T TIGR03235       222 APIMFGGGQERGLRPGTLPVPLIVGMGEAAEIARRNAQAWGVRLRAMCNLLRDALQTSLPGVKLNGDPAE-----TLPNI  296 (354)
T ss_pred             CCEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCC-----CCCCE
T ss_conf             6403689886874689965999999999999999828999999999999999999745996596588224-----75888


Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCC
Q ss_conf             23321133224898999999998739799835022
Q gi|254780602|r  334 IGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSF  368 (400)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~F  368 (400)
                      ..    ......+++++...| + .+|+|..|+++
T Consensus       297 ~s----~~~~gi~~~~l~~~L-~-~~iavstGSAC  325 (354)
T TIGR03235       297 LS----FSFEGVNPEALIRNL-K-ADAAVSTGSAC  325 (354)
T ss_pred             EE----EEECCCCHHHHHHHH-C-CCCEEEHHHHC
T ss_conf             99----997996999999986-3-99899822420


No 135
>PRK06234 methionine gamma-lyase; Provisional
Probab=99.77  E-value=5.5e-18  Score=129.61  Aligned_cols=226  Identities=16%  Similarity=0.237  Sum_probs=141.4

Q ss_pred             CCCCCCC-CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----CCCCCC
Q ss_conf             5699877-89899999999864210133332233233454333322222223322322223333232222----222222
Q gi|254780602|r   62 TKYTAVA-GISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPD----MVALCG  136 (400)
Q Consensus        62 ~~Y~~~~-G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l~~~~~~~~~~Gd~Vlv~~P~y~~y~~----~~~~~g  136 (400)
                      .+|.-++ |.| .++++.+.+...-|    .+.-++++.+..||..++.+++++||+|++.+..|..-..    .+...|
T Consensus        54 ~~~~YsR~~nP-T~~~lE~~la~LEg----g~~a~~~sSGmaAi~~~l~~~l~~Gdhiv~~~~~YGgT~~l~~~~l~~~G  128 (399)
T PRK06234         54 SGYIYTRLGNP-TSTEVENKLALLEG----GEAAVVAASGMGAISSSLWSALKAGDHVVASDTLYGCTFALLNHGLTRYG  128 (399)
T ss_pred             CCCEECCCCCH-HHHHHHHHHHHHHC----CCEEEEECCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHCCC
T ss_conf             78524299886-79999999999839----97599845889999999999718999899758872048999998865168


Q ss_pred             CCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCC
Q ss_conf             22222222222322210333100012212201211354210000123333211122333332011101221100000122
Q gi|254780602|r  137 GIPVFVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQ  216 (400)
Q Consensus       137 ~~~~~v~~~~~~~~~~d~~~l~~~i~~~~k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~  216 (400)
                      .++.+++.       -|+++++++++++||+||+-+|.|||..+.+   +++|++++.++.++++++|..+..=.+    
T Consensus       129 i~~~~vd~-------~d~~~~~~ai~~~Tklv~~Etp~NP~l~v~D---i~~ia~iA~~~~g~~~vvDNT~atP~~----  194 (399)
T PRK06234        129 VEVTFVDT-------SNLEEVRNALKANTKVVYLETPANPNLKVTD---IKAISNIAHENKECLVFVDNTFCTPYI----  194 (399)
T ss_pred             EEEEEECC-------CCHHHHHHHCCCCCEEEEEECCCCCCCEECC---CHHHHHHHHHCCCCEEEEECCCCCCCC----
T ss_conf             57886268-------8969999647888449999789998866148---589999876557976872589776144----


Q ss_pred             CCCCCCCCCCCCCEEEEECCCCCCCCCCC-CCCCCCCCHHHHHHHHHH--HCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             33222111233322574146544322344-544422110122687531--001222332222222222223467643222
Q gi|254780602|r  217 FSNIVNVEPSLYERTLVVNGVSKAYAMTG-LRIGYAAGALSLIKSMIV--LQGQQTSGACSIAQWAAVEALNGPQDFVVN  293 (400)
Q Consensus       217 ~~s~~~~~~~~~~~~i~~~S~SK~~~~~G-~RiG~~v~~~~li~~l~~--~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~  293 (400)
                      +.++ .+  +   --|++.|.||.++--| .=.|.++++++.+.+++.  ++.....++++...+.++..|+.    +.-
T Consensus       195 ~~Pl-~~--G---aDivihS~TKyi~GHsD~l~G~v~~~~~~~~~~r~~~~~~~~G~~l~p~~a~l~lrGL~T----L~l  264 (399)
T PRK06234        195 QRPL-QL--G---ADVVVHSATKYLNGHGDVIAGFVVGKEEFINQVKLFGVKDMTGSVIGPFEAFLIIRGMKT----LQI  264 (399)
T ss_pred             CCCC-CC--C---CCEEEEECCCEECCCCCCEEEEEECCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCC----HHH
T ss_conf             6740-04--8---978998256310588771546996559999999999988701886887888998624674----999


Q ss_pred             CCCCCCCCCCCHHHHHHCCCCCE
Q ss_conf             22211000000024553047760
Q gi|254780602|r  294 NRKIFEYRRDLCVAQLQGVPGIR  316 (400)
Q Consensus       294 ~~~~~~~~r~~~~~~L~~~~g~~  316 (400)
                      ..++-.++...+.+.|++.|.++
T Consensus       265 R~~r~~~nA~~lA~~L~~hp~V~  287 (399)
T PRK06234        265 RMEKHCKNAMEVAEFLEKHPAVE  287 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             99999999999999998489847


No 136
>TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family. Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog.
Probab=99.77  E-value=5.7e-18  Score=129.50  Aligned_cols=305  Identities=18%  Similarity=0.182  Sum_probs=193.4

Q ss_pred             HHHCCCC-EEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCC-CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf             9986997-2665658974988999999999998388756998-7789899999999864210133332233233454333
Q gi|254780602|r   26 LRSKGID-VLCLTAGEPDFDMPENVKYAVVRAMERGETKYTA-VAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHV  103 (400)
Q Consensus        26 ~~~~g~~-ii~l~~G~p~~~~p~~i~~a~~~al~~~~~~Y~~-~~G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~  103 (400)
                      ++..|+| +++|+-=.-.|...+.=.+-+.        .|-. .-=..++++.--++    +|-  +++.++++|-+++|
T Consensus        18 i~~~gr~~lyDltGLsggf~i~~~~~~Lle--------TYvGpaif~ek~~~~g~~H----lgG--~~e~~v~~NRTSsa   83 (346)
T TIGR03576        18 ISRGGRDSLYDLTGLAGGFKIDEEDLELLE--------TYVGPAIFEEKVQELGREH----LGG--PEEKILVFNRTSSA   83 (346)
T ss_pred             HHHCCCCCCCCCCCCCCCCCCCHHHHHHHH--------HHHCCHHHHHHHHHHHHHH----CCC--CCCEEEEECCCHHH
T ss_conf             851486642103445678443786888999--------7505087699999999987----399--83257774562699


Q ss_pred             CCCCCCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEECCCCCCCCCC
Q ss_conf             3222222233223222233---3323222222222222222222222322210333100012212201211354210000
Q gi|254780602|r  104 IFNALMATVNMGDEVLIPR---PYWVSYPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVV  180 (400)
Q Consensus       104 l~~~~~~~~~~Gd~Vlv~~---P~y~~y~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~k~i~l~nP~NPTG~v  180 (400)
                      |..+++++..+|..|+-..   |++|.+...++++|++.+..+         +.+++...   ....++++++.+++..+
T Consensus        84 ilAtIlaL~~~~~~Vvh~vPe~paHPSI~rsc~lagaey~E~d---------~~~el~~~---d~~slvviTgstmd~~v  151 (346)
T TIGR03576        84 ILATILALEPPGRKVVHYLPEKPAHPSIPRSCKLAGAEYFESD---------ELSELKKI---DGTSLVVITGSTMDLKV  151 (346)
T ss_pred             HHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCEECCCCEEECC---------CHHHHCCC---CCCCEEEEECCCCCCEE
T ss_conf             9999998357887058978787899973020051487147506---------67762767---88718999378777300


Q ss_pred             CCCCCCCCCCCCCCCCCCCEEECCCCCCC---CCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf             12333321112233333201110122110---000012233222111233322574146544322344544422110122
Q gi|254780602|r  181 YSQNRLRALADVLVRNPHVHIISDDIYEH---IVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTGLRIGYAAGALSL  257 (400)
Q Consensus       181 ~s~~~l~~i~~~~a~~~~i~ii~De~Y~~---l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~v~~~~l  257 (400)
                      ++.+.+++++++ |+..++.+++||++..   ..|+..+   ...+  +   --+++.|..|.  |+|.|.|.+.+.+++
T Consensus       152 i~~d~~k~vI~~-Ak~~~a~V~vDDAsGARvR~L~gq~~---al~l--G---ADLvVTS~DKl--M~GPR~GlLaG~~eL  220 (346)
T TIGR03576       152 VSEEDLKRVIKQ-AKSKEAIVLVDDASGARVRRLYGQPP---ALDL--G---ADLVVTSTDKL--MDGPRGGLLAGRKEL  220 (346)
T ss_pred             CCHHHHHHHHHH-HHHCCCEEEEECCCCCCHHHHCCCCC---CCCC--C---CCEEEEEHHHC--CCCCCCCEECCCHHH
T ss_conf             457889999999-87469849985488875166519998---6555--6---42688400212--667754112288899


Q ss_pred             HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEECCCCEEEEEECCCCCCCC
Q ss_conf             68753100122233222222222222346764322222211000000024553047760330274089986264102332
Q gi|254780602|r  258 IKSMIVLQGQQTSGACSIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQGVPGIRYMIPDGAFYLYPSCQDLIGKK  337 (400)
Q Consensus       258 i~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~~~~~L~~~~g~~~~~p~g~~y~~~~~~~~~~~~  337 (400)
                      ++++..........+.+|.+.++..+|+.-+  .++.++.+++..++....+   .++.+.+...|| ++-..+      
T Consensus       221 V~ki~~~~~~~GlEaq~Pi~aAmv~aLe~f~--~~~l~~a~~r~~~~~l~~~---~~l~~e~TptGf-~ik~~~------  288 (346)
T TIGR03576       221 VDKIKSVGEQFGLEAQAPLLAAVVRALEEFE--LSRIRDAFKRKEEVYLRLF---DKLNVERTPTGF-VIKGVE------  288 (346)
T ss_pred             HHHHHHHHHHCCCCCCCCHHHHHHHHHHCCC--HHHHHHHHHHHHHHHHHHH---HCCCCCCCCCEE-EEECCC------
T ss_conf             9999999875277778415999999997079--9999999999999887653---035743278537-985656------


Q ss_pred             CCCCCCCCCHHHHHHHHHHHCCEEEECCCCC-CCCCEEEEEEEC-CHHHH
Q ss_conf             1133224898999999998739799835022-899728999629-99999
Q gi|254780602|r  338 SPSGDVIRTDLDFVNGLLEIEKVAVVQGSSF-GHGPSIRISYAV-SDAIL  385 (400)
Q Consensus       338 ~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~F-g~~~~iRis~~~-~~e~l  385 (400)
                            .....+.+..||+++||...|..+. |....+||-|+. +-+++
T Consensus       289 ------~e~~~~~~~~LL~~ygIiTIta~GmpgasktlR~d~~skDAeri  332 (346)
T TIGR03576       289 ------EEKLIEIGLDLLRNYGIITITAVGMPGASKTLRFDLAAKDAERI  332 (346)
T ss_pred             ------HHHHHHHHHHHHHHCCEEEEECCCCCCCCCEEEEEEECCCHHHH
T ss_conf             ------88889999999997694898347788876326876202516551


No 137
>PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed
Probab=99.77  E-value=3.5e-18  Score=130.82  Aligned_cols=226  Identities=15%  Similarity=0.268  Sum_probs=139.9

Q ss_pred             CCCCCCCC-CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----CCCC
Q ss_conf             75699877-898999999998642101333322332334543333222222233223222233332322222----2222
Q gi|254780602|r   61 ETKYTAVA-GISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDM----VALC  135 (400)
Q Consensus        61 ~~~Y~~~~-G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l~~~~~~~~~~Gd~Vlv~~P~y~~y~~~----~~~~  135 (400)
                      ..+|--++ |.| .++++.+.+...-|    .+.-++++.+..||..++.+++++||+|++++..|..-...    ....
T Consensus        54 ~~g~~YsR~~NP-T~~~lE~~la~LEg----~~~a~~~~SGmaAi~~~lla~l~~Gdhiv~~~~~Yg~t~~l~~~~l~~~  128 (397)
T PRK07504         54 DPGFIYSRYSNP-TVDMFEKRMCALEG----AEDARATASGMAAVTAAILCQLKAGDHVVAARALFGSCRYVVETLLPRY  128 (397)
T ss_pred             CCCCEEECCCCH-HHHHHHHHHHHHHC----CCEEEEECCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHCC
T ss_conf             689634089886-49999999999829----9859873449999999999855899989855887556999999998607


Q ss_pred             CCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCC
Q ss_conf             22222222222232221033310001221220121135421000012333321112233333201110122110000012
Q gi|254780602|r  136 GGIPVFVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNC  215 (400)
Q Consensus       136 g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~  215 (400)
                      |.++.+++.       -|+++++++++++||+||+=+|.|||..+.+   +++|+++ ++++++.+++|..+.--.+   
T Consensus       129 Gi~~~~vd~-------~d~~~~~~ai~~~Tklv~~EspsNP~l~v~D---i~~ia~i-A~~~g~~~vVDNTfatP~~---  194 (397)
T PRK07504        129 GIESTLVDG-------LDLDNWEKAVRPNTKVFFLESPTNPTLEVID---IAAVAEI-ANQAGAKLVVDNVFATPLF---  194 (397)
T ss_pred             CEEEEEECC-------CCHHHHHHHCCCCCEEEEEECCCCCCCEECC---CHHHHHH-HHHCCCEEEEECCCCCCCC---
T ss_conf             858998789-------8858899745877539998548999745137---1999999-9982995997366221112---


Q ss_pred             CCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCC-CCCCCHHHHHHH-HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             233222111233322574146544322344544-422110122687-531001222332222222222223467643222
Q gi|254780602|r  216 QFSNIVNVEPSLYERTLVVNGVSKAYAMTGLRI-GYAAGALSLIKS-MIVLQGQQTSGACSIAQWAAVEALNGPQDFVVN  293 (400)
Q Consensus       216 ~~~s~~~~~~~~~~~~i~~~S~SK~~~~~G~Ri-G~~v~~~~li~~-l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~  293 (400)
                       +.++ .+  +   --|+++|.||.++--|-=+ |.++++.+.+.+ +.........++++...+.++..|+.    +.-
T Consensus       195 -~~Pl-~~--G---aDiVvhS~TKyi~GHsDvlgGvv~~~~~~~~~~~~~~~~~~G~~~~p~~a~l~lRGL~T----L~l  263 (397)
T PRK07504        195 -QKPL-EL--G---AHIVVYSATKHIDGQGRCLGGVVLSDKAWIEEHLQDYFRHTGPSLSPFNAWVLLKGLET----LAV  263 (397)
T ss_pred             -CCHH-HH--C---CCEEEEECCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCC----HHH
T ss_conf             -6845-62--8---88799742521258876254699555899999999999971887883788998716772----999


Q ss_pred             CCCCCCCCCCCHHHHHHCCCCCE
Q ss_conf             22211000000024553047760
Q gi|254780602|r  294 NRKIFEYRRDLCVAQLQGVPGIR  316 (400)
Q Consensus       294 ~~~~~~~~r~~~~~~L~~~~g~~  316 (400)
                      ..++-.++...+.+.|++.|.++
T Consensus       264 Rm~r~~~nA~~iA~~L~~hp~V~  286 (397)
T PRK07504        264 RVRQQTESAAAIADFLAGHPKVA  286 (397)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             99999999999999997389955


No 138
>PRK05937 8-amino-7-oxononanoate synthase; Provisional
Probab=99.77  E-value=4.6e-18  Score=130.06  Aligned_cols=322  Identities=13%  Similarity=0.107  Sum_probs=180.5

Q ss_pred             CCCEEECCCCC-CCCCCCHHHHHHHHHHHHCC-------CCCCCC---CCCCH----HHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf             99726656589-74988999999999998388-------756998---77898----99999999864210133332233
Q gi|254780602|r   30 GIDVLCLTAGE-PDFDMPENVKYAVVRAMERG-------ETKYTA---VAGIS----PLREAIVEKFRRDNDLHYTSDQI   94 (400)
Q Consensus        30 g~~ii~l~~G~-p~~~~p~~i~~a~~~al~~~-------~~~Y~~---~~G~~----~lR~aia~~~~~~~g~~~~~e~I   94 (400)
                      +...|||+..| -++.-.|.+++|+.++++.=       .+|.+.   ..|..    +|-+.||+|+    |.   ++-+
T Consensus         3 ~~~~lnFsSNDYLGLs~~p~v~~a~~~a~~~y~~~~~~~g~Gs~gSrl~~G~~~~h~~LE~~lA~f~----g~---e~al   75 (370)
T PRK05937          3 SSLSIDFVTNDFLGFSRSTTLVHEVEKRYRLYCEQFPHAQLGYGGSRAILGPSSLLDDLEHKIAHFH----GA---PEAF   75 (370)
T ss_pred             CCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH----CC---CCEE
T ss_conf             7707824032003878998999999999998731257898768687826278699999999999986----99---9399


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCC---C--CCCCEE
Q ss_conf             23345433332222222332232222333323222222222222222222222322210333100012---2--122012
Q gi|254780602|r   95 IVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQAIT---P--KTKWLF  169 (400)
Q Consensus        95 ~it~G~~~~l~~~~~~~~~~Gd~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~---~--~~k~i~  169 (400)
                      ++++| ..+...++.++++++|.|++-.-.-......+++.+++.+.++       +-|+++|++.+.   .  ..+.++
T Consensus        76 lf~sG-y~AN~~~i~al~~~~d~i~~D~l~HaSi~dG~rls~a~~~~f~-------Hnd~~~Le~~L~~~~~~~~~~~~i  147 (370)
T PRK05937         76 IVPSG-YMANLGLCAHLSSVTDYVLWDEQVHISVVYSLSVISGKHQSFR-------HNDLDHLESLLESCRAVSFGRIFI  147 (370)
T ss_pred             EECCH-HHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHCCCCEEEEC-------CCCHHHHHHHHHHHHHCCCCCEEE
T ss_conf             98766-8899999996089999899963061999999986499869968-------999899999998533117885599


Q ss_pred             ECCCCCCCCCCCCC----CCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCC
Q ss_conf             11354210000123----33321112233333201110122110000012233222111233322574146544322344
Q gi|254780602|r  170 LNSPSNPSGVVYSQ----NRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTG  245 (400)
Q Consensus       170 l~nP~NPTG~v~s~----~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~~~G  245 (400)
                      ++      =.|||-    ..+.+|+++| ++|+.+++.||+|+.=+++. ....+.... +..+..+++.||||+||..|
T Consensus       148 v~------egVfSMdGdiapL~~l~~l~-~~y~a~l~vDeAH~~Gv~G~-~GrG~~e~~-g~~~~~~i~~TlsKAlGs~G  218 (370)
T PRK05937        148 FV------CSVYSFKGTLAPLEQIIALS-KKYHAHLIVDEAHAMGIFGD-DGKGFCHSL-GYENFYAVLVTYSKALGSMG  218 (370)
T ss_pred             EE------ECCCCCCCCCCCHHHHHHHH-HHCCCEEEEECCHHCCCCCC-CCCCHHHHC-CCCCCCEEEEEHHHHHHHCC
T ss_conf             99------40566778755899999999-98197899733000043379-997578873-99887789813256621065


Q ss_pred             CCCCCCCCHHHHHHHHHHHC-CCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEECCCC
Q ss_conf             54442211012268753100-12223322222222-22223467643222222110000000245530477603302740
Q gi|254780602|r  246 LRIGYAAGALSLIKSMIVLQ-GQQTSGACSIAQWA-AVEALNGPQDFVVNNRKIFEYRRDLCVAQLQGVPGIRYMIPDGA  323 (400)
Q Consensus       246 ~RiG~~v~~~~li~~l~~~~-~~~~~~~~~~~q~a-~~~~l~~~~~~~~~~~~~~~~~r~~~~~~L~~~~g~~~~~p~g~  323 (400)
                         ||+++++++++.+.... .+..+.+.+|.+.+ +..+++.-.+--+..|+.+.++++++.+.+.. ..-.++.|   
T Consensus       219 ---gfv~~s~~~i~~l~~~ar~~IfStalpP~~~aa~~~al~~l~~e~~~~r~~l~~~~~~~~~~~~~-~~~~~i~p---  291 (370)
T PRK05937        219 ---AALLSSSEVKQDLMLNSPPLRYSTGLPPHALISIQVAYDFLSQEGELARKQLFRLKEYFAQKFSS-AAPGCVQP---  291 (370)
T ss_pred             ---EEEECCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCC-CCCCCEEE---
T ss_conf             ---38982889999999839640036755899999999999999859599999999999999985066-78997488---


Q ss_pred             EEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCCCCEEEEEEE--CCHHHHHHHHHHHHHHHHHCC
Q ss_conf             89986264102332113322489899999999873979983502289972899962--999999999999999998609
Q gi|254780602|r  324 FYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGHGPSIRISYA--VSDAILEEACVRIKRFCHSLQ  400 (400)
Q Consensus       324 ~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~iRis~~--~~~e~l~~al~rl~~~l~~l~  400 (400)
                        +++  ++            ....++. ..|.+.||.+.|-. |-.-+-+||++.  .++++++..++.|+++.++++
T Consensus       292 --I~~--~~------------~~~~~~~-~~L~~~Gi~v~~Ir-~PtVPrLRi~l~A~HT~edId~Lv~~L~~~~~~~~  352 (370)
T PRK05937        292 --IFL--PD------------ISEQELY-SKLVETGIRVGVVC-FPTKPFLRVNLHAFNTEDEVDILVSVLHSYLEKCQ  352 (370)
T ss_pred             --EEE--CC------------HHHHHHH-HHHHHCCEEEEEEC-CCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             --980--83------------8999999-99997897798689-89988378861866699999999999999999986


No 139
>TIGR00858 bioF 8-amino-7-oxononanoate synthase; InterPro: IPR004723   8-amino-7-oxononanoate synthase (2.3.1.47 from EC) is involved in biotin biosynthesis.   Synonym(s): AONS, 8-amino-7-ketopelargonate synthase, 7-keto-8-amino-pelargonic acid synthetase, 7-KAP synthetase; GO: 0008710 8-amino-7-oxononanoate synthase activity, 0009102 biotin biosynthetic process.
Probab=99.77  E-value=2e-18  Score=132.31  Aligned_cols=326  Identities=18%  Similarity=0.147  Sum_probs=203.4

Q ss_pred             HHHHCC--CCEEECCCCC-CCCCCCHHHHHH-HHHHHHC---CCC------CCCCCCCCHHHHHHHHHHHHHHCCCCCCC
Q ss_conf             999869--9726656589-749889999999-9999838---875------69987789899999999864210133332
Q gi|254780602|r   25 DLRSKG--IDVLCLTAGE-PDFDMPENVKYA-VVRAMER---GET------KYTAVAGISPLREAIVEKFRRDNDLHYTS   91 (400)
Q Consensus        25 ~~~~~g--~~ii~l~~G~-p~~~~p~~i~~a-~~~al~~---~~~------~Y~~~~G~~~lR~aia~~~~~~~g~~~~~   91 (400)
                      ++..+|  +.+++|+..| -.+.-.|.++++ ..+++.+   |.+      ||.+.  +.+|-++||+|..       .+
T Consensus        15 ~~~~dgPP~~~l~FsSNDYLGLa~hp~l~~af~~~~~~~~G~Gs~aSrLv~G~~~~--H~~LE~~lA~~kg-------~E   85 (378)
T TIGR00858        15 EVVRDGPPRRLLNFSSNDYLGLASHPELIQAFAQQAAEQYGAGSTASRLVTGNSPL--HEELEEELAEFKG-------TE   85 (378)
T ss_pred             EEEECCCCHHHHHCCCCCCHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHH--HHHHHHHHHHHHC-------CC
T ss_conf             78876887146531364401003798899999999998668773674340378568--9999999998628-------82


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCC-----CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCC--
Q ss_conf             2332334543333222222233-----223222233332322222222222222222222232221033310001221--
Q gi|254780602|r   92 DQIIVGTGAKHVIFNALMATVN-----MGDEVLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQAITPK--  164 (400)
Q Consensus        92 e~I~it~G~~~~l~~~~~~~~~-----~Gd~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~--  164 (400)
                      .=+++++| ..|..-++.++++     +||.|+--.-.-..-...+++.+++.+.|+       +-|+|.|++++.+.  
T Consensus        86 aALlFsSG-Y~AN~Gvi~aL~~~~~l~~~DlilsD~LNHASl~dG~rLS~A~~~~y~-------H~D~~~L~~lL~~~~g  157 (378)
T TIGR00858        86 AALLFSSG-YLANVGVISALVGKRVLEKGDLILSDALNHASLIDGCRLSGARVLRYR-------HNDVEHLERLLEKNRG  157 (378)
T ss_pred             CEEEEHHH-HHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHHHHHCCCCCEEECC-------CCCHHHHHHHHHHCCC
T ss_conf             03420027-899999999875157656786044202547778986415986278706-------8998999999974015


Q ss_pred             --CCCEEECCCCCCCCCCCC----CCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCC-CCCCEEEEECCC
Q ss_conf             --220121135421000012----3333211122333332011101221100000122332221112-333225741465
Q gi|254780602|r  165 --TKWLFLNSPSNPSGVVYS----QNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEP-SLYERTLVVNGV  237 (400)
Q Consensus       165 --~k~i~l~nP~NPTG~v~s----~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~-~~~~~~i~~~S~  237 (400)
                        -+.++++      =.|+|    ...|.+|+++| |+|+.|+++||||.-=++++ .-.-.....+ ...+..|.++||
T Consensus       158 ~~~~~livT------DGVFSMDGD~APL~~L~~la-~~~~A~L~VDDAHgtGVlG~-~G~G~~~~fgl~~~~~~i~~GTl  229 (378)
T TIGR00858       158 KERRKLIVT------DGVFSMDGDIAPLPQLVALA-ERYGAWLMVDDAHGTGVLGE-DGRGTLEHFGLKPAPVDIQVGTL  229 (378)
T ss_pred             CCCCEEEEE------CCEECCCCCCCCHHHHHHHH-HHCCCEEEEECCCCCCCCCC-CCCHHHHHCCCCCCCEEEEEEEC
T ss_conf             137768897------00131688848978999999-87098899986545366288-75414976598888726998613


Q ss_pred             CCCCCCCCCCCCCCCCHHHHHHHHHHH-CCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCC-
Q ss_conf             443223445444221101226875310-01222332222222-222223467643222222110000000245530477-
Q gi|254780602|r  238 SKAYAMTGLRIGYAAGALSLIKSMIVL-QGQQTSGACSIAQW-AAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQGVPG-  314 (400)
Q Consensus       238 SK~~~~~G~RiG~~v~~~~li~~l~~~-~~~~~~~~~~~~q~-a~~~~l~~~~~~~~~~~~~~~~~r~~~~~~L~~~~g-  314 (400)
                      ||.+|..|   ||+++++.+++-|... +++.++..=+|.+. ++.++|+--++--.+.|+.+.++.+.+.+.++.+ | 
T Consensus       230 SKAlGs~G---a~V~g~~~l~~yL~n~AR~~If~TaLPPa~~aA~~aAl~~i~~~~~~rr~~L~~~~~~~~~~l~~~-~~  305 (378)
T TIGR00858       230 SKALGSYG---AYVAGSEALIDYLINRARTFIFSTALPPAVVAAALAALELIQEEEPWRREKLLALIARLRKGLEAL-GK  305 (378)
T ss_pred             CHHHHHCH---HHHHHHHHHHHHHHHCCCCCEECCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHC-CC
T ss_conf             16654052---563545899999984157642323665889999999999722248647899999999999998754-76


Q ss_pred             --CEEEECCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCC-CCCE--EEEEEE--CCHHHHHH
Q ss_conf             --6033027408998626410233211332248989999999987397998350228-9972--899962--99999999
Q gi|254780602|r  315 --IRYMIPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFG-HGPS--IRISYA--VSDAILEE  387 (400)
Q Consensus       315 --~~~~~p~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg-~~~~--iRis~~--~~~e~l~~  387 (400)
                        +.+..++.-. +++=+.+           ..+-.++++.| ++.||.+.+-..=- ++|.  +||++.  -++++|+.
T Consensus       306 ~~f~~~~~~TPI-~P~~~G~-----------~~~al~~a~~L-~~~G~~v~AIRPPTVP~G~sRLR~Tl~A~Ht~~di~~  372 (378)
T TIGR00858       306 LVFQLMPSETPI-VPVIIGD-----------EESALALAEEL-QEQGIFVGAIRPPTVPKGTSRLRLTLSAAHTEGDIDR  372 (378)
T ss_pred             CCCEECCCCCCC-EEEEECC-----------CHHHHHHHHHH-HHCCCEEECCCCCCCCCCCCEEEEEEEECCCHHHHHH
T ss_conf             631016789862-5887089-----------28999999999-8779479102588887796104557740489889999


Q ss_pred             HHHHH
Q ss_conf             99999
Q gi|254780602|r  388 ACVRI  392 (400)
Q Consensus       388 al~rl  392 (400)
                      .++.|
T Consensus       373 L~~~l  377 (378)
T TIGR00858       373 LLEAL  377 (378)
T ss_pred             HHHHC
T ss_conf             99973


No 140
>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.
Probab=99.76  E-value=4.3e-18  Score=130.24  Aligned_cols=323  Identities=16%  Similarity=0.151  Sum_probs=200.6

Q ss_pred             CCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             98899999999999838875699877898999999998642101333322332334543333222222233223222233
Q gi|254780602|r   43 FDMPENVKYAVVRAMERGETKYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFNALMATVNMGDEVLIPR  122 (400)
Q Consensus        43 ~~~p~~i~~a~~~al~~~~~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l~~~~~~~~~~Gd~Vlv~~  122 (400)
                      .++|+.|++|+....   ....  ++-..++-+.+.+.+++.++.+ +.+-|+++.+++.++..++..++.+||+|++.+
T Consensus         8 ~~~~~~V~~Am~~~~---~~hR--~~~F~~~~~~~~~~L~~~~~~~-~~~~v~~~gsgt~a~ea~~~n~~~~~~kvlv~~   81 (356)
T cd06451           8 SNVPPRVLKAMNRPM---LGHR--SPEFLALMDEILEGLRYVFQTE-NGLTFLLSGSGTGAMEAALSNLLEPGDKVLVGV   81 (356)
T ss_pred             CCCCHHHHHHHCCCC---CCCC--CHHHHHHHHHHHHHHHHHHCCC-CCCEEEEECCHHHHHHHHHHHCCCCCCCEEEEE
T ss_conf             988899999857999---8867--8899999999999999995899-984899957708999999985268888147885


Q ss_pred             CC-CC-CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCC-CCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             33-23-222222222222222222222322210333100012-2122012113542100001233332111223333320
Q gi|254780602|r  123 PY-WV-SYPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQAIT-PKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHV  199 (400)
Q Consensus       123 P~-y~-~y~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~-~~~k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i  199 (400)
                      =+ |. -+..+++..|..++.++.+...  .+|++++++.+. ++++++.+++-.|.||...+   +++|.++| ++++.
T Consensus        82 ~G~fg~r~~~~a~~~g~~~~~i~~~~~~--~~~~~~v~~~l~~~~~~~v~~~h~etstG~~~~---l~~i~~~~-~~~~~  155 (356)
T cd06451          82 NGVFGDRWADMAERYGADVDVVEKPWGE--AVSPEEIAEALEQHDIKAVTLTHNETSTGVLNP---LEGIGALA-KKHDA  155 (356)
T ss_pred             EEECCCCHHHHHHHCCCCEEEEECCCCC--CCCHHHHHHHHHCCCCCEEEEECCCCCCCCCCC---HHHHHHHH-HHCCE
T ss_conf             3040541676441159723998689999--789899998863389658999665365101477---58899987-41572


Q ss_pred             EEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCC-CCCCCCCCCCCHHHHHHHHHHHCC------------
Q ss_conf             1110122110000012233222111233322574146544322-344544422110122687531001------------
Q gi|254780602|r  200 HIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYA-MTGLRIGYAAGALSLIKSMIVLQG------------  266 (400)
Q Consensus       200 ~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~-~~G~RiG~~v~~~~li~~l~~~~~------------  266 (400)
                      ++++|.+.+.   ...+ ..+     +...--+.+.|--|.++ .||  +|+++.+++.++++.....            
T Consensus       156 ~~~vDavss~---g~~~-id~-----~~~giD~~~~ssqK~l~~ppG--l~~~~vs~~a~~~~~~~~~~~~~y~dl~~~~  224 (356)
T cd06451         156 LLIVDAVSSL---GGEP-FRM-----DEWGVDVAYTGSQKALGAPPG--LGPIAFSERALERIKKKTKPKGFYFDLLLLL  224 (356)
T ss_pred             EEEEECCHHH---CCCC-CCC-----CCCCEEEEEECCCCCCCCCCC--EEEEEECHHHHHHHHHCCCCCCCCCCHHHHH
T ss_conf             7997253110---5565-025-----666605999768864458996--6899988999999860389987777989999


Q ss_pred             -------CCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEECCCCEEEEEECCCCCCCCC
Q ss_conf             -------222332222222222223467-643222222110000000245530477603302740899862641023321
Q gi|254780602|r  267 -------QQTSGACSIAQWAAVEALNGP-QDFVVNNRKIFEYRRDLCVAQLQGVPGIRYMIPDGAFYLYPSCQDLIGKKS  338 (400)
Q Consensus       267 -------~~~~~~~~~~q~a~~~~l~~~-~~~~~~~~~~~~~~r~~~~~~L~~~~g~~~~~p~g~~y~~~~~~~~~~~~~  338 (400)
                             .....++...-.+..++|+.- ++-++...+++++..+.+.+.|+++ |++...+++..     .+.......
T Consensus       225 ~~~~~~~~~~~Tp~~~~i~al~~AL~~i~~~G~~~~~~r~~~l~~~l~~~l~~l-Gl~~~~~~~~~-----S~~vt~~~~  298 (356)
T cd06451         225 KYWGEGYSYPHTPPVNLLYALREALDLILEEGLENRWARHRRLAKALREGLEAL-GLKLLAKPELR-----SPTVTAVLV  298 (356)
T ss_pred             HHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHC-CCCCCCCHHHC-----CCEEEEEEC
T ss_conf             876148987889880688999999999986065899999999999999999975-99656893654-----982799979


Q ss_pred             CCCCCCCCHHHHHHHHHHHCCEEEECCCCCCCCCEEEEEE-E-CCHHHHHHHHHHHHHHHH
Q ss_conf             1332248989999999987397998350228997289996-2-999999999999999998
Q gi|254780602|r  339 PSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGHGPSIRISY-A-VSDAILEEACVRIKRFCH  397 (400)
Q Consensus       339 ~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~iRis~-~-~~~e~l~~al~rl~~~l~  397 (400)
                      +   ...+..++..+|++++|+.+.+|.+--....|||+. + .+.++++..++.|++.|+
T Consensus       299 p---~g~~~~~~~~~l~~~~~i~i~~g~g~~~~~~fRIg~mG~~~~~di~~~l~al~~~Lk  356 (356)
T cd06451         299 P---EGVDGDEVVRRLMKRYNIEIAGGLGPTAGKVFRIGHMGEATREDVLGVLSALEEALK  356 (356)
T ss_pred             C---CCCCHHHHHHHHHHHCCEEEECCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHC
T ss_conf             9---999999999999997899997886656895898618989999999999999999859


No 141
>PRK08133 O-succinylhomoserine sulfhydrylase; Validated
Probab=99.76  E-value=9.1e-18  Score=128.27  Aligned_cols=224  Identities=18%  Similarity=0.252  Sum_probs=140.2

Q ss_pred             CCCCCC-CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----CCCCCCC
Q ss_conf             699877-89899999999864210133332233233454333322222223322322223333232222----2222222
Q gi|254780602|r   63 KYTAVA-GISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPD----MVALCGG  137 (400)
Q Consensus        63 ~Y~~~~-G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l~~~~~~~~~~Gd~Vlv~~P~y~~y~~----~~~~~g~  137 (400)
                      +|--++ |.| .++++.+.+...-|    .+.-++++.++.||..++.+++++||+|++.+..|..-..    .+...|.
T Consensus        52 g~~YsR~~nP-T~~~lE~~la~LEg----~~~a~~~sSGmaAi~~~ll~~l~~Gd~iv~~~~~Yggt~~l~~~~l~~~Gi  126 (391)
T PRK08133         52 GNTYSRFTNP-TVRMFQERLAALEG----AEACVATASGMAAILSVVMALLQAGDHVVSSRSLFGSTLSLFEKIFARFGI  126 (391)
T ss_pred             CCEEECCCCH-HHHHHHHHHHHHHC----CCEEEEECCHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHCCCE
T ss_conf             9543489886-69999999999809----975999658899999999984579998996789745389999987410784


Q ss_pred             CCCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCC
Q ss_conf             22222222223222103331000122122012113542100001233332111223333320111012211000001223
Q gi|254780602|r  138 IPVFVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQF  217 (400)
Q Consensus       138 ~~~~v~~~~~~~~~~d~~~l~~~i~~~~k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~  217 (400)
                      ++.+++.       -|+++++++++++||+||+-+|.|||..+.+   +++|+++ ++++++++++|..+.--.+    .
T Consensus       127 ~~~~vd~-------~d~~~~~~ai~~~T~lv~~EtpsNP~l~v~D---i~~i~~i-A~~~g~~~vVDNT~atP~~----~  191 (391)
T PRK08133        127 ETTFVDL-------TDLDAWRAAVRPNTKLFFLETPSNPLTELAD---IAALAEI-AHAAGALLVVDNCFCTPAL----Q  191 (391)
T ss_pred             EEEECCC-------CCHHHHHHHCCCCCEEEEEECCCCCCCEEEC---CHHHHHH-HHHCCCEEEEECCCCCCCC----C
T ss_conf             4446798-------7999999745878459999789999866555---3999999-8755875998789765244----4


Q ss_pred             CCCCCCCCCCCCEEEEECCCCCCCCCCCCC-CCCCCCHHHHH-HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             322211123332257414654432234454-44221101226-8753100122233222222222222346764322222
Q gi|254780602|r  218 SNIVNVEPSLYERTLVVNGVSKAYAMTGLR-IGYAAGALSLI-KSMIVLQGQQTSGACSIAQWAAVEALNGPQDFVVNNR  295 (400)
Q Consensus       218 ~s~~~~~~~~~~~~i~~~S~SK~~~~~G~R-iG~~v~~~~li-~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~  295 (400)
                      .++ .+     .--|++.|.||.++--|=- .|.++++.+.+ +.+.........+++++..+.++..|+.    +.-..
T Consensus       192 ~Pl-~~-----GaDivvhS~TKyi~GHsD~lgG~v~~~~~~~~~~~~~~~~~~G~~lsP~~a~l~lrGL~T----L~lRm  261 (391)
T PRK08133        192 QPL-KL-----GADVVIHSATKYLDGQGRVLGGAVVGSKEFIMEEVFGFLRTAGPTLSPFNAWVFLKGLET----LSLRM  261 (391)
T ss_pred             CHH-HH-----CCCEEEEECCCEECCCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCC----HHHHH
T ss_conf             656-61-----883799966603048887444899636799999999999974888893277898604776----99999


Q ss_pred             CCCCCCCCCHHHHHHCCCCCE
Q ss_conf             211000000024553047760
Q gi|254780602|r  296 KIFEYRRDLCVAQLQGVPGIR  316 (400)
Q Consensus       296 ~~~~~~r~~~~~~L~~~~g~~  316 (400)
                      ++-.++...+.+.|++.|.+.
T Consensus       262 ~r~~~nA~~lA~~L~~hp~V~  282 (391)
T PRK08133        262 EAHSANALELAEWLEAHPGVE  282 (391)
T ss_pred             HHHHHHHHHHHHHHHCCCCCC
T ss_conf             999999999999997099914


No 142
>cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of  the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis
Probab=99.76  E-value=2.5e-19  Score=137.76  Aligned_cols=166  Identities=17%  Similarity=0.170  Sum_probs=125.9

Q ss_pred             CHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCC
Q ss_conf             9899999999864210133332233233454333322222223322322223333232-222222222222222222223
Q gi|254780602|r   70 ISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVS-YPDMVALCGGIPVFVDTQQDD  148 (400)
Q Consensus        70 ~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l~~~~~~~~~~Gd~Vlv~~P~y~~-y~~~~~~~g~~~~~v~~~~~~  148 (400)
                      ..|+|+.+|++++      ...|++++|+|+++|+.+++.++++|||+|+++.+.|.. +.......|+++++++.+.+.
T Consensus         2 ~~e~e~~la~~~~------~~~~~~i~~~sgt~A~~~~~~~l~~~gd~vi~~~~~~~s~~~~~~~~~g~~~~~~~~~~~~   75 (170)
T cd01494           2 LEELEEKLARLLQ------PGNDKAVFVPSGTGANEAALLALLGPGDEVIVDANGHGSRYWVAAELAGAKPVPVPVDDAG   75 (170)
T ss_pred             HHHHHHHHHHHHC------CCCCEEEEECHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHCCCEEEEECCCCCC
T ss_conf             8999999999848------9989899956699999999999727999999826843756899998659877872347787


Q ss_pred             CCCCHHHHHHCC-CCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             222103331000-1221220121135421000012333321112233333201110122110000012233222111233
Q gi|254780602|r  149 NFQVSPEKLEQA-ITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSL  227 (400)
Q Consensus       149 ~~~~d~~~l~~~-i~~~~k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~  227 (400)
                      .+..+.+.+++. ..++++++++++|+||||.+.+   +++|+++| +++++++++|++++.-......    .  ....
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~~~~---l~~I~~la-~~~gi~livD~a~~~g~~~~~~----~--~~~~  145 (170)
T cd01494          76 YGGLDVAILEELKAKPNVALIVITPNTTSGGVLVP---LKEIRKIA-KEYGILLLVDAASAGGASPAPG----V--LIPE  145 (170)
T ss_pred             CCCCCHHHHHHHHCCCCCEEEEEEEECCCCCCCCC---HHHHHHHH-HHCCCEEEEECCCHHCCCCCCC----C--CCCC
T ss_conf             55468999999855999636887740147873201---99997356-2079699994684321606666----6--7777


Q ss_pred             CCEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf             32257414654432234454442211
Q gi|254780602|r  228 YERTLVVNGVSKAYAMTGLRIGYAAG  253 (400)
Q Consensus       228 ~~~~i~~~S~SK~~~~~G~RiG~~v~  253 (400)
                      ..--++..|++|.++.||  .|.++.
T Consensus       146 ~~~D~~~~s~hK~lg~~g--~g~l~~  169 (170)
T cd01494         146 GGADVVTFSLHKNLGGEG--GGVVIV  169 (170)
T ss_pred             CCCEEEEECCCCCCCCCC--EEEEEE
T ss_conf             898599989866678985--799998


No 143
>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis. This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.
Probab=99.75  E-value=9.8e-18  Score=128.08  Aligned_cols=224  Identities=19%  Similarity=0.264  Sum_probs=142.0

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----CCCCC
Q ss_conf             56998778989999999986421013333223323345433332222222332232222333323222222----22222
Q gi|254780602|r   62 TKYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDMV----ALCGG  137 (400)
Q Consensus        62 ~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l~~~~~~~~~~Gd~Vlv~~P~y~~y~~~~----~~~g~  137 (400)
                      +-|+- .|.|- ++++.+.+....|    .+.-++++.+..||..++.+++.+||+|++++..|..-...+    ...|.
T Consensus        32 ~~Y~R-~~nPT-~~~le~~la~LEg----~~~a~~~sSGmaAi~~~l~~l~~~Gd~vl~~~~~Yg~t~~~~~~~l~~~Gi  105 (369)
T cd00614          32 YIYSR-IGNPT-VDALEKKLAALEG----GEAALAFSSGMAAISTVLLALLKAGDHVVASDDLYGGTYRLFERLLPKLGI  105 (369)
T ss_pred             CEECC-CCCHH-HHHHHHHHHHHHC----CCCEEEECCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHCCCE
T ss_conf             63419-98867-9999999999829----980899657899999999985288999999578852399999977860892


Q ss_pred             CCCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCC
Q ss_conf             22222222223222103331000122122012113542100001233332111223333320111012211000001223
Q gi|254780602|r  138 IPVFVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQF  217 (400)
Q Consensus       138 ~~~~v~~~~~~~~~~d~~~l~~~i~~~~k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~  217 (400)
                      ++.+++.       .|.++++++++++||+|++=+|.|||..+.+   +++|+++ ++++++.+++|..+..-.+    +
T Consensus       106 ~v~~~d~-------~d~~~~~~~i~~~t~li~~EspsNP~l~v~D---i~~i~~~-A~~~g~~~vvDNT~atp~~----~  170 (369)
T cd00614         106 EVTFVDP-------DDPEALEAAIKPETKLVYVESPTNPTLKVVD---IEAIAEL-AHEHGALLVVDNTFATPYL----Q  170 (369)
T ss_pred             EEEEECC-------CCHHHHHHHCCCCCEEEEEECCCCCCCEECC---CHHHHHH-HHHCCEEEEEECCCCCHHC----C
T ss_conf             3897678-------7868899763878508999658999706227---2999999-9766717997477431201----5


Q ss_pred             CCCCCCCCCCCCEEEEECCCCCCCCCCCC-CCCCCCCH-HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             32221112333225741465443223445-44422110-12268753100122233222222222222346764322222
Q gi|254780602|r  218 SNIVNVEPSLYERTLVVNGVSKAYAMTGL-RIGYAAGA-LSLIKSMIVLQGQQTSGACSIAQWAAVEALNGPQDFVVNNR  295 (400)
Q Consensus       218 ~s~~~~~~~~~~~~i~~~S~SK~~~~~G~-RiG~~v~~-~~li~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~  295 (400)
                      .++ .+  +   --|++.|+||.++--|- =.|.++++ +++.+.+...+.....++++...+.+...|+.    +.-..
T Consensus       171 ~Pl-~~--G---aDivv~S~TKy~~Ghsd~l~G~v~~~~~~~~~~l~~~~~~~G~~~sp~~a~l~lrgl~T----L~lRm  240 (369)
T cd00614         171 RPL-EL--G---ADIVVHSATKYIGGHSDVIAGVVVGSGEALIQRLRFLRLALGTILSPFDAWLLLRGLKT----LPLRM  240 (369)
T ss_pred             CHH-HH--C---CCEEEEECCCCCCCCCCEEEEEEEECHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCC----HHHHH
T ss_conf             857-74--8---96899955631258877576899827088899999999864576897888998860175----99999


Q ss_pred             CCCCCCCCCHHHHHHCCCCCE
Q ss_conf             211000000024553047760
Q gi|254780602|r  296 KIFEYRRDLCVAQLQGVPGIR  316 (400)
Q Consensus       296 ~~~~~~r~~~~~~L~~~~g~~  316 (400)
                      +.-.++...+.+.|++.|.+.
T Consensus       241 ~~~~~nA~~lA~~L~~hp~V~  261 (369)
T cd00614         241 ERHSENALKVAEFLEKHPKVE  261 (369)
T ss_pred             HHHHHHHHHHHHHHHCCCCCC
T ss_conf             999999999999997199988


No 144
>COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]
Probab=99.75  E-value=1.4e-17  Score=127.23  Aligned_cols=324  Identities=18%  Similarity=0.162  Sum_probs=188.0

Q ss_pred             HCCCCEEECCCCC-CCCCCCHHHHHHHHHHHHC-CC--CC----CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf             8699726656589-7498899999999999838-87--56----998778989999999986421013333223323345
Q gi|254780602|r   28 SKGIDVLCLTAGE-PDFDMPENVKYAVVRAMER-GE--TK----YTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTG   99 (400)
Q Consensus        28 ~~g~~ii~l~~G~-p~~~~p~~i~~a~~~al~~-~~--~~----Y~~~~G~~~lR~aia~~~~~~~g~~~~~e~I~it~G   99 (400)
                      ..|.++++|+..| -.+.-.|.+++++.+++++ |.  .+    ++...=+.+|-+.+|+|+    |.   ++-+++++|
T Consensus        36 ~~~~~~~nf~SNdYLGLa~~~~~~~a~~~~~~~~g~g~~gsR~i~G~~~~h~~LE~~lA~f~----g~---e~al~f~SG  108 (388)
T COG0156          36 ADGRKVLNFCSNDYLGLASHPELIEAAKAAIRRYGVGAGGSRLISGTSDLHVELEEELADFL----GA---EAALLFSSG  108 (388)
T ss_pred             CCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHH----CC---CCEEEECCC
T ss_conf             17840676443774352688789999999999819998976704478289999999999984----99---848997153


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCC---C--CCCEEECCCC
Q ss_conf             4333322222223322322223333232222222222222222222223222103331000122---1--2201211354
Q gi|254780602|r  100 AKHVIFNALMATVNMGDEVLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQAITP---K--TKWLFLNSPS  174 (400)
Q Consensus       100 ~~~~l~~~~~~~~~~Gd~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~---~--~k~i~l~nP~  174 (400)
                       -.+...++.+++++||-|+.-.-.-......+++.+++.+.+.       +-|++.|++.+.+   .  .+.+++    
T Consensus       109 -y~AN~~~i~~l~~~~dli~~D~lnHASiidG~rls~a~~~~f~-------HnD~~~Le~~l~~~~~~~~~~~~Iv----  176 (388)
T COG0156         109 -FVANLGLLSALLKKGDLIFSDELNHASIIDGIRLSRAEVRRFK-------HNDLDHLEALLEEARENGARRKLIV----  176 (388)
T ss_pred             -CHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHCCCCEEEEC-------CCCHHHHHHHHHHHHCCCCCCEEEE----
T ss_conf             -1117778888568886899801020539988985788389826-------8999999999876222478754999----


Q ss_pred             CCCCCCCC----CCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCC---CCCCCCCCEEEEECCCCCCCCCCCCC
Q ss_conf             21000012----333321112233333201110122110000012233222---11123332257414654432234454
Q gi|254780602|r  175 NPSGVVYS----QNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIV---NVEPSLYERTLVVNGVSKAYAMTGLR  247 (400)
Q Consensus       175 NPTG~v~s----~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~---~~~~~~~~~~i~~~S~SK~~~~~G~R  247 (400)
                        |=.|||    -..+.+|+++ +++|+.++++||+|+-=++++ ....+.   .+.+  .++.|.++||||.|+..|  
T Consensus       177 --tegVfSMdGdiApL~~l~~L-~~ky~a~L~VDEAHa~Gv~G~-~GrG~~e~~g~~~--~~vdi~~gTlsKAlGs~G--  248 (388)
T COG0156         177 --TEGVFSMDGDIAPLPELVEL-AEKYGALLYVDEAHAVGVLGP-NGRGLAEHFGLEP--EEVDIIVGTLGKALGSSG--  248 (388)
T ss_pred             --EECCCCCCCCCCCHHHHHHH-HHHHCCEEEEECCCCCCCCCC-CCCCHHHHHCCCC--CCCEEEEEECHHHHCCCC--
T ss_conf             --82342189985778999999-998395899985201024379-9861788738887--651499987505432268--


Q ss_pred             CCCCCCHHHHHHHHHHH-CCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEECCCCEE
Q ss_conf             44221101226875310-01222332222222-22222346764322222211000000024553047760330274089
Q gi|254780602|r  248 IGYAAGALSLIKSMIVL-QGQQTSGACSIAQW-AAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQGVPGIRYMIPDGAFY  325 (400)
Q Consensus       248 iG~~v~~~~li~~l~~~-~~~~~~~~~~~~q~-a~~~~l~~~~~~~~~~~~~~~~~r~~~~~~L~~~~g~~~~~p~g~~y  325 (400)
                       ||+.++..+++.+... +.+..+..-+|.+. ++.++++.-++ ....++.++++...+.+.++.. |+.+.. ..+--
T Consensus       249 -g~v~g~~~~~d~L~~~ar~~ifStalpP~~aaa~~~al~~l~~-~~~~r~~L~~~~~~~~~~~~~~-~~~~~~-s~s~I  324 (388)
T COG0156         249 -GYIAGSAALIDYLRNRARPFIFSTALPPAVAAAALAALRILEE-GPERRERLQELAAFFRSLLKAL-GLVLLP-SESPI  324 (388)
T ss_pred             -CEEECCHHHHHHHHHHCCCEECCCCCCHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHC-CCCCCC-CCCCE
T ss_conf             -4465759999999971865221477897889999999999875-8788999999999999888852-976578-88986


Q ss_pred             EEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCC-CC--CEEEEEEE--CCHHHHHHHHHHHHH
Q ss_conf             98626410233211332248989999999987397998350228-99--72899962--999999999999999
Q gi|254780602|r  326 LYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFG-HG--PSIRISYA--VSDAILEEACVRIKR  394 (400)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg-~~--~~iRis~~--~~~e~l~~al~rl~~  394 (400)
                      +.+-+.+           .....++...|+++ ||.+.+...=- +.  .-+|++++  .++++++..++.|.+
T Consensus       325 ~pv~~gd-----------~~~a~~~s~~l~~~-Gi~v~~i~~PTVp~gtarlRi~lta~ht~~~I~~l~~~l~~  386 (388)
T COG0156         325 IPVILGD-----------EERALEASRALLEE-GIYVSAIRPPTVPKGTARLRITLTAAHTEEDIDRLAEALSE  386 (388)
T ss_pred             EEEEECC-----------HHHHHHHHHHHHHC-CEEEEEECCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf             6169688-----------89999999999977-92571236899899965089871677999999999999985


No 145
>pfam01053 Cys_Met_Meta_PP Cys/Met metabolism PLP-dependent enzyme. This family includes enzymes involved in cysteine and methionine metabolism. The following are members: Cystathionine gamma-lyase, Cystathionine gamma-synthase, Cystathionine beta-lyase, Methionine gamma-lyase, OAH/OAS sulfhydrylase, O-succinylhomoserine sulfhydrylase All of these members participate is slightly different reactions. All these enzymes use PLP (pyridoxal-5'-phosphate) as a cofactor.
Probab=99.74  E-value=7.4e-18  Score=128.82  Aligned_cols=223  Identities=20%  Similarity=0.272  Sum_probs=141.8

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----CCCCCCC
Q ss_conf             699877898999999998642101333322332334543333222222233223222233332322222----2222222
Q gi|254780602|r   63 KYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDM----VALCGGI  138 (400)
Q Consensus        63 ~Y~~~~G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l~~~~~~~~~~Gd~Vlv~~P~y~~y~~~----~~~~g~~  138 (400)
                      -|+- .|.|- ++++.+.+...-|    .+.-++++.+..||..++.+++.+||+|++++..|..-...    ....|.+
T Consensus        45 ~Y~R-~~nPt-~~~le~~la~LEg----~~~a~~~~SGmaAi~~~ll~l~~~Gd~il~~~~~Yg~t~~~~~~~l~~~Gi~  118 (381)
T pfam01053        45 DYSR-SGNPT-RDALEERIAALEG----GEAALAFSSGMAAIFAALLALLKAGDHVVATDDLYGGTYRLFEKVLPRFGIE  118 (381)
T ss_pred             EEEC-CCCHH-HHHHHHHHHHHHC----CCEEEEECCHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCE
T ss_conf             2418-98867-9999999999819----9738993588999999997557999989995787375899999988715850


Q ss_pred             CCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC
Q ss_conf             22222222232221033310001221220121135421000012333321112233333201110122110000012233
Q gi|254780602|r  139 PVFVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFS  218 (400)
Q Consensus       139 ~~~v~~~~~~~~~~d~~~l~~~i~~~~k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~  218 (400)
                      +.+++.       -|+++++++++++||+||+=+|.|||..+.+   +++|+++ ++++++.+++|..+.--.+    +.
T Consensus       119 v~~~d~-------~d~~~~~~~i~~~T~li~~EspsNP~l~v~D---i~~ia~i-A~~~gi~~vVDNT~atP~~----~~  183 (381)
T pfam01053       119 VTFVDP-------SDLDALEAAIKPNTKAVFLETPTNPLLKVVD---IEAIAKI-AKKHGALVVVDNTFASPYL----QR  183 (381)
T ss_pred             EEEECC-------CCHHHHHHHCCCCCEEEEEECCCCCCEEECC---CHHHHHH-HHHCCCEEEEECCCCHHHH----CC
T ss_conf             676266-------5867899755888429999748998605126---0999999-8645735998788600521----24


Q ss_pred             CCCCCCCCCCCEEEEECCCCCCCCCCCC-CCCCCCCH--HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             2221112333225741465443223445-44422110--12268753100122233222222222222346764322222
Q gi|254780602|r  219 NIVNVEPSLYERTLVVNGVSKAYAMTGL-RIGYAAGA--LSLIKSMIVLQGQQTSGACSIAQWAAVEALNGPQDFVVNNR  295 (400)
Q Consensus       219 s~~~~~~~~~~~~i~~~S~SK~~~~~G~-RiG~~v~~--~~li~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~  295 (400)
                      ++ .+  +   --|++.|.+|.++--|= =.|.++.+  .++.+++...+.....++++...+.+...|+.    +.-..
T Consensus       184 Pl-~~--G---aDivvhS~TKyi~GhsDvl~G~v~~~~~~~~~~~l~~~~~~~G~~~~p~~a~l~~rgl~T----L~lR~  253 (381)
T pfam01053       184 PL-EL--G---ADIVVHSATKYIGGHSDVVGGVVVVNGREELAKRLRFLQNATGAVLSPFDAWLLLRGLKT----LGLRM  253 (381)
T ss_pred             CH-HC--C---CCEEEEECCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCC----HHHHH
T ss_conf             13-30--7---977997534303688761305999688266899999999861687886888998714787----99999


Q ss_pred             CCCCCCCCCHHHHHHCCCCCE
Q ss_conf             211000000024553047760
Q gi|254780602|r  296 KIFEYRRDLCVAQLQGVPGIR  316 (400)
Q Consensus       296 ~~~~~~r~~~~~~L~~~~g~~  316 (400)
                      +.-.++...+.+.|++.|.++
T Consensus       254 ~~~~~nA~~lA~~L~~hp~V~  274 (381)
T pfam01053       254 ERHQENALKLAEFLEEHPKVE  274 (381)
T ss_pred             HHHHHHHHHHHHHHHHCCCCC
T ss_conf             998889999999997299977


No 146
>PRK06460 hypothetical protein; Provisional
Probab=99.74  E-value=1.4e-17  Score=127.12  Aligned_cols=223  Identities=16%  Similarity=0.177  Sum_probs=144.0

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----CCCCCC
Q ss_conf             5699877898999999998642101333322332334543333222222233223222233332322222----222222
Q gi|254780602|r   62 TKYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDM----VALCGG  137 (400)
Q Consensus        62 ~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l~~~~~~~~~~Gd~Vlv~~P~y~~y~~~----~~~~g~  137 (400)
                      +.|+- .|.|- ++++.+.+....|    .+.-++++.+..||..++.+++.+||+|++++..|..-...    +...|.
T Consensus        37 y~Y~R-~gnPT-~~~le~~la~LEg----~~~a~~~~SGmaAi~~~l~~~l~~Gdhiv~~~~~Yg~t~~l~~~~l~~~Gv  110 (375)
T PRK06460         37 YRYSR-EVNPT-VLKLAEKIAELEE----AEMGVAFSSGMGAISTTLLTLLKPGSSVLIHRDMFGRSYRFFTDFLRNWGV  110 (375)
T ss_pred             CEEEC-CCCHH-HHHHHHHHHHHHC----CCEEEEECCHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCE
T ss_conf             25638-98877-9999999999819----980899535999999999997289998997178758679999999873786


Q ss_pred             CCCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCC
Q ss_conf             22222222223222103331000122122012113542100001233332111223333320111012211000001223
Q gi|254780602|r  138 IPVFVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQF  217 (400)
Q Consensus       138 ~~~~v~~~~~~~~~~d~~~l~~~i~~~~k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~  217 (400)
                      ++.+++.       -|.+.+++.++++||+||+=+|.|||-.+.+   +++|+++| +++++.+++|..+.--.+    +
T Consensus       111 ~v~~~d~-------~~~~~~~~~~~~~Tklv~~EspsNP~l~v~D---i~~i~~ia-~~~gi~~vVDNT~atP~~----~  175 (375)
T PRK06460        111 KVEVARP-------GEENILEKIKNKRYDVVFVETISNPLLRVID---IPELSKAC-KENGALLIVDSTFATPIN----Q  175 (375)
T ss_pred             EEEEECC-------CCHHHHHHHCCCCCEEEEEECCCCCCCCCCC---CHHHHHHH-HHCCCEEEEECCCCCCCC----C
T ss_conf             7797389-------9999999734767608999889998764058---58999999-874993897567414122----8


Q ss_pred             CCCCCCCCCCCCEEEEECCCCCCCCCCC-CCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             3222111233322574146544322344-544422110122687531001222332222222222223467643222222
Q gi|254780602|r  218 SNIVNVEPSLYERTLVVNGVSKAYAMTG-LRIGYAAGALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGPQDFVVNNRK  296 (400)
Q Consensus       218 ~s~~~~~~~~~~~~i~~~S~SK~~~~~G-~RiG~~v~~~~li~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~  296 (400)
                      .++ .+  +   --|++.|.||.++--| .=.|.+++++++++++...+.....++++...+.++..|+.    +.-..+
T Consensus       176 ~Pl-~~--G---aDivvhS~TKyi~GhsD~l~Gvv~~~~~~~~~l~~~~~~~G~~lsP~~a~l~~rGl~T----L~lR~~  245 (375)
T PRK06460        176 KPL-VQ--G---ADIVIHSASKFIAGHNDVIAGLAAGSYELMKKIDLMRRTLGTSLDPHAAYLTIRGIKT----LKIRMD  245 (375)
T ss_pred             CHH-HH--C---CCEEEEECCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCC----HHHHHH
T ss_conf             814-51--7---9889995564346788734034248199999999998642787881668888636998----999999


Q ss_pred             CCCCCCCCHHHHHHCCCCC
Q ss_conf             1100000002455304776
Q gi|254780602|r  297 IFEYRRDLCVAQLQGVPGI  315 (400)
Q Consensus       297 ~~~~~r~~~~~~L~~~~g~  315 (400)
                      .-.++...+.+.|++.|.+
T Consensus       246 ~~~~nA~~lA~~L~~hp~V  264 (375)
T PRK06460        246 VINSNAQKIAEFLQEHPKV  264 (375)
T ss_pred             HHHHHHHHHHHHHHHCCCC
T ss_conf             9999999999999748981


No 147
>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional
Probab=99.74  E-value=1.8e-17  Score=126.43  Aligned_cols=234  Identities=18%  Similarity=0.260  Sum_probs=145.0

Q ss_pred             HHHHHHCCCCCCCCCC-CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-
Q ss_conf             9999838875699877-89899999999864210133332233233454333322222223322322223333232222-
Q gi|254780602|r   53 VVRAMERGETKYTAVA-GISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPD-  130 (400)
Q Consensus        53 ~~~al~~~~~~Y~~~~-G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l~~~~~~~~~~Gd~Vlv~~P~y~~y~~-  130 (400)
                      +.+.......+|--++ |.| .++++.+.+...-|    .+.-++++.++.||..++.+++.+||+|++....|..-.. 
T Consensus        54 ~~~~f~g~~~g~~YsR~~NP-T~~~lE~~la~LEg----g~~a~~~sSGMaAi~~~ll~ll~~Gd~iv~~~~~YGgT~~l  128 (406)
T PRK07810         54 AEKAFTGELDRYVYSRYGNP-TVSMFEERLRLIEG----APACFATASGMAAVFTALGALLGAGDRLVAARSLFGSCFVV  128 (406)
T ss_pred             HHHHHCCCCCCCCCCCCCCH-HHHHHHHHHHHHCC----CCEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHH
T ss_conf             99983798679613089886-28999999999709----98599843899999999999728999899837986377999


Q ss_pred             ---CCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCC
Q ss_conf             ---22222222222222222322210333100012212201211354210000123333211122333332011101221
Q gi|254780602|r  131 ---MVALCGGIPVFVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIY  207 (400)
Q Consensus       131 ---~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y  207 (400)
                         .+...|.++.+++.       .|+++++++++++||+||+-+|.|||..+.+   +++|+++ ++++++.+|+|..+
T Consensus       129 ~~~~l~~~GI~~~~vd~-------~d~~~~~~ai~~~Tk~v~~EtpsNP~l~v~D---i~aia~i-A~~~g~~~vVDNTf  197 (406)
T PRK07810        129 CNEILPRWGVETVFVDG-------DDLSQWEEALSVPTQAVFFETPSNPMQSLVD---IAAVTEL-AHAAGAKVVLDNVF  197 (406)
T ss_pred             HHHHHHCCCEEEEEECC-------CCHHHHHHHCCCCCEEEEEECCCCCCCEECC---HHHHHHH-HHHCCCEEEEECCC
T ss_conf             99776448749999689-------8859999755888628998448999856116---7999999-99749859997887


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCC-CCCCCHHHHHHH-HHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             10000012233222111233322574146544322344544-422110122687-5310012223322222222222234
Q gi|254780602|r  208 EHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTGLRI-GYAAGALSLIKS-MIVLQGQQTSGACSIAQWAAVEALN  285 (400)
Q Consensus       208 ~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~~~G~Ri-G~~v~~~~li~~-l~~~~~~~~~~~~~~~q~a~~~~l~  285 (400)
                      .--.+    +.++ .+  +   --|++.|.||.++--|-=+ |.++++.+.++. +...+.....+++....+.++..|+
T Consensus       198 aTP~~----~rPl-~~--G---ADiVvhS~TKyi~GHsd~lgG~v~~~~~~~~~~~~~~~~~~G~~lsP~~a~l~lrGL~  267 (406)
T PRK07810        198 ATPLL----QQGF-PL--G---VDVVVYSGTKHIDGQGRVLGGAILGDREYIDGPVQKLMRHTGPALSAFNAWTLLKGLE  267 (406)
T ss_pred             CCCCC----CCCH-HC--C---CCEEEEECCCCCCCCCCEECCEEECCHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCC
T ss_conf             77553----5842-12--8---9889995353236887603636952678889999999997389898788899870689


Q ss_pred             CCCCCCCCCCCCCCCCCCCHHHHHHCCCCCE
Q ss_conf             6764322222211000000024553047760
Q gi|254780602|r  286 GPQDFVVNNRKIFEYRRDLCVAQLQGVPGIR  316 (400)
Q Consensus       286 ~~~~~~~~~~~~~~~~r~~~~~~L~~~~g~~  316 (400)
                      .    +.-..++-.++...+.+.|++.|.++
T Consensus       268 T----L~lRm~r~~~nA~~vA~~L~~hp~V~  294 (406)
T PRK07810        268 T----LAIRVQHSNASALRIAEFLEGHPAVR  294 (406)
T ss_pred             C----HHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             7----99999999999999999997399813


No 148
>PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional
Probab=99.74  E-value=4e-18  Score=130.44  Aligned_cols=202  Identities=24%  Similarity=0.303  Sum_probs=138.9

Q ss_pred             CEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             72665658974988999999999998388756998778989999999986421013333223323345433332222222
Q gi|254780602|r   32 DVLCLTAGEPDFDMPENVKYAVVRAMERGETKYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFNALMAT  111 (400)
Q Consensus        32 ~ii~l~~G~p~~~~p~~i~~a~~~al~~~~~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l~~~~~~~  111 (400)
                      +.|+++-  |++  .+.-.+++.++++.+...  ...-..++-+++++|+...+        .+.++.++.||.+++.++
T Consensus         3 ~~IP~~~--p~~--~~~e~~~v~~~l~sg~~~--~G~~v~~FE~~~a~~~g~k~--------av~v~sgT~AL~lal~al   68 (379)
T PRK11658          3 EFLPFSR--PAM--GDEEIAAVKEVLRSGWIT--TGPKNQELEQAFCQLTGNQH--------AIAVSSATAGMHITLMAL   68 (379)
T ss_pred             CCCCCCC--CCC--CHHHHHHHHHHHHCCCCC--CCHHHHHHHHHHHHHHCCCE--------EEEECCHHHHHHHHHHHC
T ss_conf             8636789--999--999999999999669867--88779999999999978694--------999768899999999986


Q ss_pred             -CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf             -3322322223333232222222222222222222223222103331000122122012113542100001233332111
Q gi|254780602|r  112 -VNMGDEVLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALA  190 (400)
Q Consensus       112 -~~~Gd~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~k~i~l~nP~NPTG~v~s~~~l~~i~  190 (400)
                       +.|||+||+|.-+|..-...+...|++|+.++.+++ .|.+|+++++++|+++||+|+.++-   -|..   .++++|.
T Consensus        69 ~i~~gdeVi~p~~tf~at~~ai~~~Ga~pvf~Did~~-t~~id~~~~e~~it~~tkaIi~Vh~---~G~~---~d~~~i~  141 (379)
T PRK11658         69 GIGPGDEVITPSQTWVSTLNMIVLLGATPVMVDVDRD-TLMVTPEAIEAAITPRTKAIIPVHY---AGAP---ADLDAIR  141 (379)
T ss_pred             CCCCCCEEEECCCCHHHHHHHHHHCCCEEEEECCCCC-CCCCCHHHHHHHCCCCCEEEEEECC---CCCC---CCHHHHH
T ss_conf             9888399998995569999999981998997457456-5354889998654826549998568---8986---6377999


Q ss_pred             CCCCCCCCCEEECCCCCCCC-CCCCCCCCCCCCCCCCCCCEEEEECCC--CCCCCCCCCCCCCCCC-HHHHHHHHHHHCC
Q ss_conf             22333332011101221100-000122332221112333225741465--4432234454442211-0122687531001
Q gi|254780602|r  191 DVLVRNPHVHIISDDIYEHI-VYRNCQFSNIVNVEPSLYERTLVVNGV--SKAYAMTGLRIGYAAG-ALSLIKSMIVLQG  266 (400)
Q Consensus       191 ~~~a~~~~i~ii~De~Y~~l-~~~~~~~~s~~~~~~~~~~~~i~~~S~--SK~~~~~G~RiG~~v~-~~~li~~l~~~~~  266 (400)
                      ++| +++++.||+|.+++.- .|.|...   .+.     .  +.+.||  +|.++ +| --|.+++ ++++.+++..++.
T Consensus       142 ~i~-~~~~i~vIEDaA~a~Ga~~~g~~~---Gs~-----g--~a~fSF~~~K~it-tG-eGG~ivtnd~~l~~~~r~lr~  208 (379)
T PRK11658        142 AIG-ERYGIPVIEDAAHAVGTYYKGRHI---GAR-----G--TAIFSFHAIKNIT-CA-EGGLIVTDDEELADRLRMLKF  208 (379)
T ss_pred             HHH-HHCCCEEEECCHHHHCCCCCCCCC---CCC-----C--CEEEECCCCCCCC-CC-CCEEEEECCHHHHHHHHHHHH
T ss_conf             999-975981897083553665479866---762-----4--4578566666787-77-874999699999999999997


Q ss_pred             C
Q ss_conf             2
Q gi|254780602|r  267 Q  267 (400)
Q Consensus       267 ~  267 (400)
                      +
T Consensus       209 h  209 (379)
T PRK11658        209 H  209 (379)
T ss_pred             C
T ss_conf             7


No 149
>COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=99.74  E-value=2.7e-17  Score=125.37  Aligned_cols=318  Identities=20%  Similarity=0.258  Sum_probs=183.1

Q ss_pred             CHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCC
Q ss_conf             999999999998388756998778989999999986421013333223323345433332222222-3322322223333
Q gi|254780602|r   46 PENVKYAVVRAMERGETKYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFNALMAT-VNMGDEVLIPRPY  124 (400)
Q Consensus        46 p~~i~~a~~~al~~~~~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l~~~~~~~-~~~Gd~Vlv~~P~  124 (400)
                      -+...+++.++++++....++-  ..++-+++|+|+.-        .+.+.++.++.||.+++.++ +.|||+||++.-+
T Consensus        14 ~~~e~~~v~~vl~sg~i~~G~~--v~~FE~~~ae~~G~--------k~ava~~sgT~AL~laL~al~ig~GDeVI~ps~T   83 (374)
T COG0399          14 GEEELAAVQEVLKSGWLTGGPF--VRRFEQAFAEYLGV--------KYAVAVSSGTAALHLALLALAIGPGDEVIVPSFT   83 (374)
T ss_pred             CHHHHHHHHHHHHCCCCCCCHH--HHHHHHHHHHHHCC--------CEEEEECCHHHHHHHHHHHCCCCCCCEEEECCCC
T ss_conf             4579999999996197416867--89999999998499--------7399966848999999996487999979936875


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECC
Q ss_conf             23222222222222222222222322210333100012212201211354210000123333211122333332011101
Q gi|254780602|r  125 WVSYPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISD  204 (400)
Q Consensus       125 y~~y~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~D  204 (400)
                      |..-...+.+.|++|++++.+++. |.+|++.|+++|+++||+|+.++-   -|..   .++++|.++| ++|+++||+|
T Consensus        84 fvATan~i~~~Ga~PVFvDid~~T-~nid~~~ie~aIt~~tKAIipVhl---~G~~---~dm~~i~~la-~~~~l~vIED  155 (374)
T COG0399          84 FVATANAVLLVGAKPVFVDIDPDT-LNIDPDLIEAAITPRTKAIIPVHL---AGQP---CDMDAIMALA-KRHGLPVIED  155 (374)
T ss_pred             HHHHHHHHHHCCCEEEEEECCCCC-CCCCHHHHHHHCCCCCEEEEEEHH---CCCC---CCHHHHHHHH-HHCCCEEEEE
T ss_conf             398899999769967999647641-477999999871557749998512---1687---7989999999-8739849987


Q ss_pred             CCCCC-CCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCC-HHHHHHHHHHHCCCCCCCCCCCCCCC---
Q ss_conf             22110-00001223322211123332257414654432234454442211-01226875310012223322222222---
Q gi|254780602|r  205 DIYEH-IVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTGLRIGYAAG-ALSLIKSMIVLQGQQTSGACSIAQWA---  279 (400)
Q Consensus       205 e~Y~~-l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~v~-~~~li~~l~~~~~~~~~~~~~~~q~a---  279 (400)
                      .+++. -.|.|++.-++...      -++.++ -+|.+. +| --|.++. ++++.+++..++.+...... .-++-   
T Consensus       156 aAqa~Ga~y~gk~vGt~Gd~------~~fSF~-~~K~it-tg-EGGav~tnd~ela~k~~~lr~hG~~~~~-~~~y~~~~  225 (374)
T COG0399         156 AAQAHGATYKGKKVGSFGDI------GAFSFH-ATKNLT-TG-EGGAVVTNDEELAEKARSLRNHGLSRDA-VFKYLHEE  225 (374)
T ss_pred             CCHHCCCEECCCCCCCCCCE------EEEEEC-CCCCCC-CC-CCEEEEECCHHHHHHHHHHHHHCCCCCC-CCCCEEEE
T ss_conf             60320672358425566646------899865-877655-66-7507983889999999999983767786-65643521


Q ss_pred             ---------CCCCCCCC-CCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEE-CCCCEEEEEECCCCCCCCCCCCCCCCCHH
Q ss_conf             ---------22223467-64322222211000000024553047760330-27408998626410233211332248989
Q gi|254780602|r  280 ---------AVEALNGP-QDFVVNNRKIFEYRRDLCVAQLQGVPGIRYMI-PDGAFYLYPSCQDLIGKKSPSGDVIRTDL  348 (400)
Q Consensus       280 ---------~~~~l~~~-~~~~~~~~~~~~~~r~~~~~~L~~~~g~~~~~-p~g~~y~~~~~~~~~~~~~~~~~~~~~~~  348 (400)
                               +.+++.-. -+.+++..+.-++..+...+.|++++++.... +.+..-.|--..-....      . ..+.
T Consensus       226 ~G~N~rm~~iqAAigl~QL~~l~~~~~~R~~~a~~Y~~~l~~~~~~~~p~~~~~~~~~~~~~~i~~~~------~-~~~R  298 (374)
T COG0399         226 LGYNYRLTEIQAAIGLAQLERLDEINERRREIAQIYAEALKGLPGITLPPEPDGAVHAWHLYTILVDE------E-GISR  298 (374)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEEEEECC------C-CCCH
T ss_conf             33003877999999999998889999999999999999861078743357898761230366898267------7-7789


Q ss_pred             HHHHHHHHHCCEE----EECCCCC------C-C-----C-------CEEEEEE--ECCHHHHHHHHHHHHHHHHH
Q ss_conf             9999999873979----9835022------8-9-----9-------7289996--29999999999999999986
Q gi|254780602|r  349 DFVNGLLEIEKVA----VVQGSSF------G-H-----G-------PSIRISY--AVSDAILEEACVRIKRFCHS  398 (400)
Q Consensus       349 ~~~~~Ll~~~gV~----v~pG~~F------g-~-----~-------~~iRis~--~~~~e~l~~al~rl~~~l~~  398 (400)
                      +-....|++.||.    ..|-...      + .     +       ..+++-+  ..+++++++-++.|++++++
T Consensus       299 ~~l~~~L~~~gi~~~~~~~P~~~~~~~~~~~~~~~~~lp~ae~~~~r~l~LP~~p~l~~~~~~~V~~~l~~~~~~  373 (374)
T COG0399         299 DALMESLKEAGVGAVVYFRPLHLQPAYRQLGYFPEGDLPNAEDLSERILSLPLHPNLSEEDVDRVIEALKEVLGS  373 (374)
T ss_pred             HHHHHHHHHCCCCCEEEEECCCCCHHHHCCCCCCCCCCCHHHHHHHCEEECCCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf             999999986787751663134432666504456667882288996174872589998999999999999998504


No 150
>PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated
Probab=99.73  E-value=2.1e-17  Score=126.08  Aligned_cols=222  Identities=18%  Similarity=0.191  Sum_probs=135.7

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----CCCCCC
Q ss_conf             6998778989999999986421013333223323345433332222222332232222333323222222----222222
Q gi|254780602|r   63 KYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDMV----ALCGGI  138 (400)
Q Consensus        63 ~Y~~~~G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l~~~~~~~~~~Gd~Vlv~~P~y~~y~~~~----~~~g~~  138 (400)
                      .|+- .|.|- ++++-+.+...-|    .+.-++++.+..|+.. +.+++++||+|++.+..|..-..++    ...|.+
T Consensus        43 ~Y~R-~~nPt-~~~lE~~la~LEg----~~~a~~~sSGmAAi~a-~la~~~~Gd~iv~~~~~Yg~t~~~~~~~l~~~GI~  115 (379)
T PRK06176         43 EYSR-SGNPT-RFALEELIADLEG----GVKGFAFASGLAGIHA-VFSLFQSGDHVLLGDDVYGGTFRLFDKVLVKNGLS  115 (379)
T ss_pred             CCCC-CCCHH-HHHHHHHHHHHHC----CCCEEECCCHHHHHHH-HHHHHCCCCEEEEECCCCCCHHHHHHHHHHCCCEE
T ss_conf             0408-98854-9999999999829----8653312557999999-99986899989981898887767459876447849


Q ss_pred             CCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC
Q ss_conf             22222222232221033310001221220121135421000012333321112233333201110122110000012233
Q gi|254780602|r  139 PVFVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFS  218 (400)
Q Consensus       139 ~~~v~~~~~~~~~~d~~~l~~~i~~~~k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~  218 (400)
                      +.+++.       .|+++++++++++||+||+=+|.||+..+.+   +++|+++| +++++.+++|..+.--.+    +.
T Consensus       116 ~~~vd~-------~d~~~~~~~i~~~Tklv~~EspsNP~l~v~D---i~~ia~ia-~~~gi~~vvDNT~atP~~----~~  180 (379)
T PRK06176        116 CTIIDT-------SDLSQIKKAIKPNTKALYLETPSNPLLKITD---LAQCASVA-KDHGLLTIVDNTFATPYY----QN  180 (379)
T ss_pred             EEEECC-------CCHHHHHHHCCCCCEEEEEECCCCCCCCCCC---CHHHHHHH-HHCCCEEEEECCCCCCCC----CC
T ss_conf             998678-------6768899656877459999779998760158---58999999-976987997367215133----26


Q ss_pred             CCCCCCCCCCCEEEEECCCCCCCCCCCCC-CCCCCCH-HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             22211123332257414654432234454-4422110-122687531001222332222222222223467643222222
Q gi|254780602|r  219 NIVNVEPSLYERTLVVNGVSKAYAMTGLR-IGYAAGA-LSLIKSMIVLQGQQTSGACSIAQWAAVEALNGPQDFVVNNRK  296 (400)
Q Consensus       219 s~~~~~~~~~~~~i~~~S~SK~~~~~G~R-iG~~v~~-~~li~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~  296 (400)
                      ++ .+  +   --|+++|.||.++--|== .|.++++ +++.+.+...+......+++...+.+...|+.    +.-..+
T Consensus       181 Pl-~~--G---aDiVihS~TKyi~GhsD~l~G~vv~~~~~~~~~~~~~~~~~G~~l~p~~a~ll~rGL~T----L~lR~~  250 (379)
T PRK06176        181 PL-LL--G---ADIVVHSGTKYLGGHSDVVAGLVTTNNEALAQEIAFFQNAIGGVLGPQDSWLLQRGIKT----LGLRME  250 (379)
T ss_pred             HH-HH--C---CCEEEEECCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCC----HHHHHH
T ss_conf             23-41--8---98899954501147877402388349689999999999750777784678999722252----899999


Q ss_pred             CCCCCCCCHHHHHHCCCCCE
Q ss_conf             11000000024553047760
Q gi|254780602|r  297 IFEYRRDLCVAQLQGVPGIR  316 (400)
Q Consensus       297 ~~~~~r~~~~~~L~~~~g~~  316 (400)
                      .-.++...+.+.|++.|.++
T Consensus       251 ~~~~nA~~vA~~L~~hp~V~  270 (379)
T PRK06176        251 AHQKNALCVAEFLEKHPKVE  270 (379)
T ss_pred             HHHHHHHHHHHHHHHCCCCC
T ss_conf             99999999999987199826


No 151
>TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase. This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species.
Probab=99.73  E-value=9.1e-18  Score=128.28  Aligned_cols=201  Identities=20%  Similarity=0.211  Sum_probs=136.8

Q ss_pred             CCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCC
Q ss_conf             8974988999999999998388756998778989999999986421013333223323345433332222222-332232
Q gi|254780602|r   39 GEPDFDMPENVKYAVVRAMERGETKYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFNALMAT-VNMGDE  117 (400)
Q Consensus        39 G~p~~~~p~~i~~a~~~al~~~~~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l~~~~~~~-~~~Gd~  117 (400)
                      +.|++  .+.=.+++.++++.+....++  -..++-+.+++|+...+        .+.++.++.||.+++.++ +.|||+
T Consensus         4 ~~p~i--~~~e~~~v~~~l~s~~~~~G~--~v~~fE~~~~~~~g~k~--------~v~~~sgT~AL~lal~al~~~~gde   71 (380)
T TIGR03588         4 GRQSI--DQDDIDAVVEVLKSDFLTQGP--TVPAFEEALAEYVGAKY--------AVAFNSATSALHIACLALGVGPGDE   71 (380)
T ss_pred             CCCCC--CHHHHHHHHHHHHCCCCCCCH--HHHHHHHHHHHHHCCCE--------EEEECCHHHHHHHHHHHCCCCCCCE
T ss_conf             89999--999999999998479866897--69999999999978594--------9997588999999999849999899


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCC----CCCCCEEECCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             222333323222222222222222222222322210333100012----2122012113542100001233332111223
Q gi|254780602|r  118 VLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQAIT----PKTKWLFLNSPSNPSGVVYSQNRLRALADVL  193 (400)
Q Consensus       118 Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~----~~~k~i~l~nP~NPTG~v~s~~~l~~i~~~~  193 (400)
                      ||+|+-+|..-...+..+|++|+.++++++ .|.+|+++++++|+    ++||+|+.++-   -|..   .++++|.++|
T Consensus        72 Vivp~~tf~at~~ai~~~Ga~pvf~Dvd~~-t~~id~~~l~~~it~~~~~ktkaIi~vh~---~G~~---~d~~~i~~ia  144 (380)
T TIGR03588        72 VWTTPITFVATANCALYCGAKVDFVDIDPD-TGNIDEDALEKKLAAAKGKLPKAIVPVDF---AGKS---VDMQAIAALA  144 (380)
T ss_pred             EEECCCCCHHHHHHHHHCCCEEEEEECCHH-HCCCCHHHHHHHHHHCCCCCCEEEEEECC---CCEE---CCHHHHHHHH
T ss_conf             996785308867999987996899844100-01489888777776436777259999489---8543---4899999999


Q ss_pred             CCCCCCEEECCCCCCCC-CCCCCCCCCCCCCCCCCCCEEEEECCC--CCCCCCCCCCCCCCCC-HHHHHHHHHHHCCCC
Q ss_conf             33332011101221100-000122332221112333225741465--4432234454442211-012268753100122
Q gi|254780602|r  194 VRNPHVHIISDDIYEHI-VYRNCQFSNIVNVEPSLYERTLVVNGV--SKAYAMTGLRIGYAAG-ALSLIKSMIVLQGQQ  268 (400)
Q Consensus       194 a~~~~i~ii~De~Y~~l-~~~~~~~~s~~~~~~~~~~~~i~~~S~--SK~~~~~G~RiG~~v~-~~~li~~l~~~~~~~  268 (400)
                       +++++.||+|.+.+.- .|.+...-+.     ...+  +.+.||  +|.++ +| --|.+++ ++++.+.+..++.+.
T Consensus       145 -~~~~i~lIEDaA~a~Ga~~~gk~~Gs~-----~~gd--~~~fSF~~~K~it-tG-eGG~i~tnd~~l~~~~r~lr~~G  213 (380)
T TIGR03588       145 -KKHGLKIIEDASHALGAEYGGKPVGNC-----RYAD--ATVFSFHPVKIIT-TA-EGGAVTTNDEELAERMRLLRSHG  213 (380)
T ss_pred             -HHCCCEEEEECCCHHCCCCCCCCCCCC-----CCCC--EEEEECCCCCCCC-CC-CCEEEEECCHHHHHHHHHHHHCC
T ss_conf             -986988999880011577578765664-----4352--4677335555577-78-85399969999999999999769


No 152
>PRK07505 hypothetical protein; Provisional
Probab=99.73  E-value=6.8e-17  Score=122.97  Aligned_cols=329  Identities=12%  Similarity=0.114  Sum_probs=175.4

Q ss_pred             HCCCCEEECCCCC-CCCCCCHHHHHHHHHHHHCCCC---CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf             8699726656589-7498899999999999838875---69987789899999999864210133332233233454333
Q gi|254780602|r   28 SKGIDVLCLTAGE-PDFDMPENVKYAVVRAMERGET---KYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHV  103 (400)
Q Consensus        28 ~~g~~ii~l~~G~-p~~~~p~~i~~a~~~al~~~~~---~Y~~~~G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~  103 (400)
                      ..|+++++|+..+ -++...|.++++..+++++--.   +=.-..|..++-+.+=+.+.+.+|    +|-+++++|. .+
T Consensus        46 ~dGr~~lnF~SndYLGL~~hp~v~~aa~~a~~~yG~g~~~s~~~~g~~~~h~~LE~~LA~~~g----~eal~f~sg~-~A  120 (405)
T PRK07505         46 TDGKEFVNFVSCSYLGLDNHPAIIDGAVDALRRTGVLDLSSSRTRVQSQILKDLEESLSELFG----ASVLTFTSCS-AA  120 (405)
T ss_pred             ECCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHC----CCEEEECCHH-HH
T ss_conf             389789750435535888999999999999998688987648641483999999999998739----8779873268-99


Q ss_pred             CCCCCCCCC------CCCCCCCCCCCCCCCCCCC-----CCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEECC
Q ss_conf             322222223------3223222233332322222-----22222222222222223222103331000122122012113
Q gi|254780602|r  104 IFNALMATV------NMGDEVLIPRPYWVSYPDM-----VALCGGIPVFVDTQQDDNFQVSPEKLEQAITPKTKWLFLNS  172 (400)
Q Consensus       104 l~~~~~~~~------~~Gd~Vlv~~P~y~~y~~~-----~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~k~i~l~n  172 (400)
                      ...++.+++      +++|.++.-.   .+|.++     +...+++++.++       +-|++.|++......+.++++-
T Consensus       121 n~g~i~~Lasg~~~~~~~~~ii~D~---~~HaSl~~~~g~~~s~a~~~~f~-------HnD~~~Le~~~~~~~~~~iV~E  190 (405)
T PRK07505        121 HLGILPLLASGHLTGGKPPHMVFDK---YAHASLAILKGICADETEVETID-------HNDLDALEDICKTNKRVAYVAD  190 (405)
T ss_pred             HHHHHHHHHHCCCCCCCCCEEEEEC---CCCCCHHHHHHHHCCCCCEEEEC-------CCCHHHHHHHHHHCCCCEEEEE
T ss_conf             9999999972222489987899987---64378455667754899689867-------9999999998745699489998


Q ss_pred             C--CCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCC--CCCCCCCCEEEEECCCCCCCCCCCCCC
Q ss_conf             5--421000012333321112233333201110122110000012233222--111233322574146544322344544
Q gi|254780602|r  173 P--SNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIV--NVEPSLYERTLVVNGVSKAYAMTGLRI  248 (400)
Q Consensus       173 P--~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~--~~~~~~~~~~i~~~S~SK~~~~~G~Ri  248 (400)
                      -  +-  |-+.   .+.+|+++| ++|+.+++.||+|+.-+++. ....+.  .+.....++.|.+.||||.|+..|   
T Consensus       191 gVfSM--GdiA---pL~~l~~L~-~~y~a~L~vDEAH~~Gv~G~-~GrG~~~~~~~~~~~~~~i~~gTlsKA~Gs~G---  260 (405)
T PRK07505        191 GVYSM--GGIA---PVKELVDLQ-DKYGLFVYIDDAHGLSIYGK-NGEGYVRSELDYRLNERTIIATSLGKAFGASG---  260 (405)
T ss_pred             EEECC--CCHH---HHHHHHHHH-HHCCEEEEEECCCEECCCCC-CCCCCHHHHHCCCCCCEEEEEEECCCHHCCCC---
T ss_conf             42558--9834---599999998-75676999965210012059-99723168757888841799800321001561---


Q ss_pred             CCCC-CHHHHHHHHHHH-CCCCCCCCCCCCCCCC-CCCCCC-CCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEECCCCE
Q ss_conf             4221-101226875310-0122233222222222-222346-76432222221100000002455304776033027408
Q gi|254780602|r  249 GYAA-GALSLIKSMIVL-QGQQTSGACSIAQWAA-VEALNG-PQDFVVNNRKIFEYRRDLCVAQLQGVPGIRYMIPDGAF  324 (400)
Q Consensus       249 G~~v-~~~~li~~l~~~-~~~~~~~~~~~~q~a~-~~~l~~-~~~~~~~~~~~~~~~r~~~~~~L~~~~g~~~~~p~g~~  324 (400)
                      ||++ +++++++-+... +.+..+.+.++.+.++ .+.++- ..+...+.++.++++.+++.+.+..    ....++ +-
T Consensus       261 G~V~~g~~~~~~~l~~~ar~~ifStal~p~~~aa~~as~~i~~~~e~~~~~~~L~~ni~~~~~~l~~----~~~~s~-~p  335 (405)
T PRK07505        261 GVIMLGYAEQIRLILRYAGPYAFSQPLNVAALGAISASAEIHLSSELDQLQQKLHNNIALFDSLIPT----EQSGSF-LP  335 (405)
T ss_pred             EEEEECCHHHHHHHHHHCCCHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCC----CCCCCC-CC
T ss_conf             5999785999999997184111366447999999999999985754799999999999999974587----778999-98


Q ss_pred             EEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCC--CCC--EEEEEEE--CCHHHHHHHHHHHHHHHHH
Q ss_conf             998626410233211332248989999999987397998350228--997--2899962--9999999999999999986
Q gi|254780602|r  325 YLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFG--HGP--SIRISYA--VSDAILEEACVRIKRFCHS  398 (400)
Q Consensus       325 y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg--~~~--~iRis~~--~~~e~l~~al~rl~~~l~~  398 (400)
                      -+.+-+.+           .....++++.|+ +.|+.+.|-. |-  +.+  -+||++.  .+++++++.++.|++.++.
T Consensus       336 I~~v~ig~-----------~~~a~~~~~~L~-e~Gi~v~~i~-~PtVp~g~~rlRi~l~A~hT~edId~l~~~L~~v~~e  402 (405)
T PRK07505        336 IRLIYIGD-----------EDTAIKYAKQLK-DAGFYTSPVF-FPVVAKGNAGLRIMFRADHTNEEIKRLCSLLKEILAD  402 (405)
T ss_pred             EEEEEECC-----------HHHHHHHHHHHH-HCCCCEEEEE-CCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHH
T ss_conf             79999499-----------999999999999-7890187563-8838979824998748889999999999999999998


Q ss_pred             C
Q ss_conf             0
Q gi|254780602|r  399 L  399 (400)
Q Consensus       399 l  399 (400)
                      +
T Consensus       403 ~  403 (405)
T PRK07505        403 Y  403 (405)
T ss_pred             H
T ss_conf             5


No 153
>PRK08247 cystathionine gamma-synthase; Reviewed
Probab=99.73  E-value=3.6e-17  Score=124.64  Aligned_cols=287  Identities=19%  Similarity=0.281  Sum_probs=166.7

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----CCCCCCC
Q ss_conf             699877898999999998642101333322332334543333222222233223222233332322222----2222222
Q gi|254780602|r   63 KYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDM----VALCGGI  138 (400)
Q Consensus        63 ~Y~~~~G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l~~~~~~~~~~Gd~Vlv~~P~y~~y~~~----~~~~g~~  138 (400)
                      -|+- .|.|- ++++.+.+...-|    .+.-++++.+..|+.. +..++++||+|+++.+.|..-...    ....|.+
T Consensus        45 ~Y~R-~~nPt-~~~le~~la~LEg----~~~a~~f~SGmaAi~~-~l~~l~~Gd~vv~~~~~Yg~t~~~~~~~l~~~Gi~  117 (366)
T PRK08247         45 DYSR-TKNPT-RGLLEQAIADLEG----GDQGFACSSGMAAIQL-VMSLFRSGDELIVSSDLYGGTYRLFEEHWKKWGVR  117 (366)
T ss_pred             CCCC-CCCHH-HHHHHHHHHHHHC----CCCEEECCCHHHHHHH-HHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEE
T ss_conf             1418-99867-9999999999829----8505311668999999-99973899989995896864889988775077469


Q ss_pred             CCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC
Q ss_conf             22222222232221033310001221220121135421000012333321112233333201110122110000012233
Q gi|254780602|r  139 PVFVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFS  218 (400)
Q Consensus       139 ~~~v~~~~~~~~~~d~~~l~~~i~~~~k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~  218 (400)
                      +.+++.       -|+++++++++++||+||+=+|.|||-.+.+   +++|+++| +++++.+++|..+.--.+    +.
T Consensus       118 ~~~~d~-------~d~~~~~~~i~~~Tkli~~Esp~NP~l~v~D---i~~i~~iA-~~~g~~~vvDNT~atP~~----~~  182 (366)
T PRK08247        118 FVYVNT-------ASIKAIEQAITPNTKAIFIETPTNPLMQETD---IAAIAKIA-KKHGLLLIVDNTFYTPVL----QR  182 (366)
T ss_pred             EEEECC-------CCHHHHHHHCCCCCEEEEEECCCCCCCCCCC---HHHHHHHH-HHCCCEEEECCCCCCCCC----CC
T ss_conf             998488-------8979999753867549998559998535015---99999998-646704984177344133----57


Q ss_pred             CCCCCCCCCCCEEEEECCCCCCCCCCC-CCCCCCCCH-HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             222111233322574146544322344-544422110-122687531001222332222222222223467643222222
Q gi|254780602|r  219 NIVNVEPSLYERTLVVNGVSKAYAMTG-LRIGYAAGA-LSLIKSMIVLQGQQTSGACSIAQWAAVEALNGPQDFVVNNRK  296 (400)
Q Consensus       219 s~~~~~~~~~~~~i~~~S~SK~~~~~G-~RiG~~v~~-~~li~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~  296 (400)
                      ++ .+  +   --|++.|.||.++--| .=.|.++++ +++.+++...+......+++...+.+...|+.    +.-..+
T Consensus       183 Pl-~~--G---aDivihS~TKyi~GhsDvl~G~vv~~~~~~~~~l~~~~~~~G~~~~p~~a~l~~rGl~T----L~lR~~  252 (366)
T PRK08247        183 PL-TE--G---ADIVIHSATKYLGGHNDVLAGLVVAKGQELCERLAYYQNAAGAVLSPFDSWLLIRGMKT----LALRMR  252 (366)
T ss_pred             CH-HC--C---CCEEEEECCCCCCCCCCEEEEEEEECCHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCC----HHHHHH
T ss_conf             41-02--8---97899742420158887154799727388888999999733667793777788635250----999999


Q ss_pred             CCCCCCCCHHHHHHCCCCCE-EEEC-CCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCE-------------E
Q ss_conf             11000000024553047760-3302-7408998626410233211332248989999999987397-------------9
Q gi|254780602|r  297 IFEYRRDLCVAQLQGVPGIR-YMIP-DGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKV-------------A  361 (400)
Q Consensus       297 ~~~~~r~~~~~~L~~~~g~~-~~~p-~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV-------------~  361 (400)
                      +-.++...+.+.|++.|.++ +.-| .||++-| ++.+               .+.+..+++.-.+             +
T Consensus       253 ~~~~nA~~lA~~L~~hp~V~~V~yPG~gg~~sf-~l~~---------------~~~~~~f~~~l~l~~~a~SlGg~eSLi  316 (366)
T PRK08247        253 QHEENAKALAAFLNEQPGVTDVLYPGKGGMLSF-RLQD---------------EEWVNPFLKSLKLITFAESLGGVESFI  316 (366)
T ss_pred             HHHHHHHHHHHHHHCCCCEEEEECCCCCCEEEE-EECC---------------HHHHHHHHHHCCCCEEECCCCCCCCEE
T ss_conf             999999999999861997048956998777999-9788---------------899999998474366812657677244


Q ss_pred             EECCC----CC--------C-CCCEEEEEEEC-CHHHHHHHHHHHHHHHHHCC
Q ss_conf             98350----22--------8-99728999629-99999999999999998609
Q gi|254780602|r  362 VVQGS----SF--------G-HGPSIRISYAV-SDAILEEACVRIKRFCHSLQ  400 (400)
Q Consensus       362 v~pG~----~F--------g-~~~~iRis~~~-~~e~l~~al~rl~~~l~~l~  400 (400)
                      ..|.+    .+        | .++.||+|++. +.|+|   ++-|.++|+++|
T Consensus       317 ~~pa~~th~~~~~~~r~~~Gi~~~liRlSvGLEd~~DL---i~Dl~qAL~~i~  366 (366)
T PRK08247        317 TYPATQTHMDIPEEIRIANGVCNRLLRFSVGIENVEDL---KADLKQAFKQVK  366 (366)
T ss_pred             ECCCCCCCCCCCHHHHHHCCCCCCEEEEEEEECCHHHH---HHHHHHHHHHCC
T ss_conf             57642454228999999759892959999500899999---999999999539


No 154
>KOG1412 consensus
Probab=99.73  E-value=2.5e-18  Score=131.69  Aligned_cols=356  Identities=15%  Similarity=0.183  Sum_probs=210.7

Q ss_pred             HHCCCCHHHHHHHHHHHHHHCCCCEEECCCC-------CCCCCCCHHHHHHHHHHHHCCC--CCCCCCCCCHHHHHHHHH
Q ss_conf             7389758999999999999869972665658-------9749889999999999983887--569987789899999999
Q gi|254780602|r    9 RRVQPSATLVAAQRVRDLRSKGIDVLCLTAG-------EPDFDMPENVKYAVVRAMERGE--TKYTAVAGISPLREAIVE   79 (400)
Q Consensus         9 ~~l~~s~~~~~~~~~~~~~~~g~~ii~l~~G-------~p~~~~p~~i~~a~~~al~~~~--~~Y~~~~G~~~lR~aia~   79 (400)
                      ...+|-..+.+.+...+....  .=++|++|       .|-.  -|.|+++-.+..++..  +.|-|..|++.++++-++
T Consensus        10 ~~a~p~~vf~~~~~y~~d~~p--~KvnL~igAYRtd~g~PWv--LPvVk~~e~~i~~d~s~NHEYLpi~Gl~~F~~~A~e   85 (410)
T KOG1412          10 PVAPPIEVFKLNASYGEDLDP--VKVNLGIGAYRTDDGKPWV--LPVVKKAEKKIANDQSLNHEYLPILGLPTFTKAATE   85 (410)
T ss_pred             CCCCHHHHHHHHHHHCCCCCC--CEEECCCCEEECCCCCEEE--EHHHHHHHHHCCCCHHCCCHHCCCCCCHHHHHHHHH
T ss_conf             547738888657775215775--0550221047748898667--535543112036740105111331486356666587


Q ss_pred             HHHHHCCCCCCCCCCC--CCCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCH
Q ss_conf             8642101333322332--3345433332222---22233223222233332322222222222222-2222222322210
Q gi|254780602|r   80 KFRRDNDLHYTSDQII--VGTGAKHVIFNAL---MATVNMGDEVLIPRPYWVSYPDMVALCGGIPV-FVDTQQDDNFQVS  153 (400)
Q Consensus        80 ~~~~~~g~~~~~e~I~--it~G~~~~l~~~~---~~~~~~Gd~Vlv~~P~y~~y~~~~~~~g~~~~-~v~~~~~~~~~~d  153 (400)
                      -+-...-.-+..+++.  -+-+++.++....   ..+++ ...|-+..|+|.++..+++.+|.+-+ .++.-..+.-.+|
T Consensus        86 l~lg~~s~a~kE~Rv~~vQslsGTGAl~~~A~Fl~~~~~-~~~VY~SnPTW~nH~~if~~aGf~tv~~Y~yWd~~~k~~d  164 (410)
T KOG1412          86 LLLGADSPAIKEDRVFGVQSLSGTGALRIAADFLATFYN-KNTVYVSNPTWENHHAIFEKAGFTTVATYPYWDAENKCVD  164 (410)
T ss_pred             HHCCCCCHHHHHCCCCCEEECCCCCHHHHHHHHHHHHCC-CCEEEECCCCHHHHHHHHHHCCCCEEEEEEEECCCCCEEC
T ss_conf             700788534332211202421565324566788887524-6526743886067788998738844556663157771213


Q ss_pred             HHHHHCCCCCCC-CCE-EECC-CCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCC--CCCC
Q ss_conf             333100012212-201-2113-5421000012333321112233333201110122110000012233222111--2333
Q gi|254780602|r  154 PEKLEQAITPKT-KWL-FLNS-PSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVE--PSLY  228 (400)
Q Consensus       154 ~~~l~~~i~~~~-k~i-~l~n-P~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~--~~~~  228 (400)
                      ++.+.+.+...+ +.+ +|+. .|||||.--++|.+.+|++.. ++.+++.+.|-+|..|.-++... ..+++.  -+..
T Consensus       165 ~e~~Lsdl~~APe~si~iLhaCAhNPTGmDPT~EQW~qia~vi-k~k~lf~fFDiAYQGfASGD~~~-DawAiR~fV~~g  242 (410)
T KOG1412         165 LEGFLSDLESAPEGSIIILHACAHNPTGMDPTREQWKQIADVI-KSKNLFPFFDIAYQGFASGDLDA-DAWAIRYFVEQG  242 (410)
T ss_pred             HHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHH-HHCCCEEEEEHHHCCCCCCCCCC-CHHHHHHHHHCC
T ss_conf             9999989863898737862001369878997889999999999-74476035420210124699541-089999999618


Q ss_pred             CEEEEECCCCCCCCCCCCCCCCCC--C-HHHHH----HHHHHHCCCCCCCCCCCCCCCCCCCCCCC---CCCCC---CCC
Q ss_conf             225741465443223445444221--1-01226----87531001222332222222222223467---64322---222
Q gi|254780602|r  229 ERTLVVNGVSKAYAMTGLRIGYAA--G-ALSLI----KSMIVLQGQQTSGACSIAQWAAVEALNGP---QDFVV---NNR  295 (400)
Q Consensus       229 ~~~i~~~S~SK~~~~~G~RiG~~v--~-~~~li----~~l~~~~~~~~~~~~~~~q~a~~~~l~~~---~~~~~---~~~  295 (400)
                      ...++..||+|.|++.|-|+|-+.  . ++..+    .+|..+.-...++++.....++.+.|+.+   ++|..   .+-
T Consensus       243 ~e~fv~QSFaKNfGlYneRvGnltvv~~n~a~i~~v~SQl~lviR~~~SNPPAyGArIV~kvL~tP~lre~W~~sik~Ms  322 (410)
T KOG1412         243 FELFVCQSFAKNFGLYNERVGNLTVVVNNPAVIAGVKSQLTLVIRSNWSNPPAYGARIVHKVLSTPELREQWIQSIKTMS  322 (410)
T ss_pred             CEEEEEHHHHHHCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_conf             73887766564316646553636999447557777887779988612678851145899998468888999999999999


Q ss_pred             CCCCCCCCCHHHHHHCC--CC-CEEEECCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCCCC
Q ss_conf             21100000002455304--77-6033027408998626410233211332248989999999987397998350228997
Q gi|254780602|r  296 KIFEYRRDLCVAQLQGV--PG-IRYMIPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGHGP  372 (400)
Q Consensus       296 ~~~~~~r~~~~~~L~~~--~g-~~~~~p~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~  372 (400)
                      .+.++.|..+.+.|..+  || +.-+.-|-|||-|--+               ++. -++.|.+++.|.+.+-      |
T Consensus       323 sRI~~MR~aLrd~L~aL~TPGtWDHI~~QiGMFSyTGL---------------tp~-qV~~li~~h~vyLl~~------G  380 (410)
T KOG1412         323 SRIKKMRTALRDHLVALKTPGTWDHITQQIGMFSYTGL---------------TPA-QVDHLIENHKVYLLSD------G  380 (410)
T ss_pred             HHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCEEECCC---------------CHH-HHHHHHHHCEEEEECC------C
T ss_conf             99999999999999861899857788765051431489---------------989-9999987363899438------8


Q ss_pred             EEEEEEE-CCH---HHHHHHHHHHHHH
Q ss_conf             2899962-999---9999999999999
Q gi|254780602|r  373 SIRISYA-VSD---AILEEACVRIKRF  395 (400)
Q Consensus       373 ~iRis~~-~~~---e~l~~al~rl~~~  395 (400)
                        ||+++ ...   |-+.+|++---++
T Consensus       381 --RInisGLN~~NveyVAkAIde~Vr~  405 (410)
T KOG1412         381 --RINISGLNMKNVEYVAKAIDETVRA  405 (410)
T ss_pred             --CEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf             --3766145654589999999999975


No 155
>PRK09028 cystathionine beta-lyase; Provisional
Probab=99.72  E-value=4.3e-17  Score=124.17  Aligned_cols=223  Identities=16%  Similarity=0.160  Sum_probs=144.1

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----CCCCCCCC
Q ss_conf             69987789899999999864210133332233233454333322222223322322223333232222----22222222
Q gi|254780602|r   63 KYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPD----MVALCGGI  138 (400)
Q Consensus        63 ~Y~~~~G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l~~~~~~~~~~Gd~Vlv~~P~y~~y~~----~~~~~g~~  138 (400)
                      -|+- .|.| .++++.+.+...-|    .+.-++++.++.||..++.+++.+||+|++.+..|..-..    .+...|.+
T Consensus        54 ~YsR-~~NP-T~~~lE~~la~LEg----g~~a~~~~SGmaAi~~~ll~ll~~Gdhiv~~~~~YggT~~l~~~~l~~~Gi~  127 (394)
T PRK09028         54 FYGR-RGTP-THFAFQAAIAELEG----GAGTALYPSGAAAISNALLSFLKAGDHLLMVDSCYEPTRDLCDKILAGFGIE  127 (394)
T ss_pred             EEEC-CCCH-HHHHHHHHHHHHHC----CCCEEEECCHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHCCEE
T ss_conf             7779-9887-79999999999819----9877984599999999999984799878706998627799999888656747


Q ss_pred             CCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC
Q ss_conf             22222222232221033310001221220121135421000012333321112233333201110122110000012233
Q gi|254780602|r  139 PVFVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFS  218 (400)
Q Consensus       139 ~~~v~~~~~~~~~~d~~~l~~~i~~~~k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~  218 (400)
                      +.+++.       -|.++++++++++||+||+-+|.|||-.+.+   +++|+++| +++++.+++|..+.--.+    ..
T Consensus       128 v~~vd~-------~~~~~~~~~i~~~Tklv~~EtpsNP~l~v~D---i~~ia~iA-~~~g~~~vVDNTfatP~~----~~  192 (394)
T PRK09028        128 TTYYDP-------MIGEGIRELIRPNTKVLFLESPGSITMEVQD---VPTLSRIA-HEHDIVVMLDNTWASPIN----SR  192 (394)
T ss_pred             EEEECC-------CCHHHHHHHCCCCCEEEEEECCCCCCCCCCC---HHHHHHHH-HHCCCEEEECCCCCCHHC----CC
T ss_conf             999579-------9989998536877269999558998752368---99999999-983987996376431220----68


Q ss_pred             CCCCCCCCCCCEEEEECCCCCCCCCCC-CCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             222111233322574146544322344-5444221101226875310012223322222222222234676432222221
Q gi|254780602|r  219 NIVNVEPSLYERTLVVNGVSKAYAMTG-LRIGYAAGALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGPQDFVVNNRKI  297 (400)
Q Consensus       219 s~~~~~~~~~~~~i~~~S~SK~~~~~G-~RiG~~v~~~~li~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~  297 (400)
                      ++ .+  +   --|+++|.||.++--| .=.|.++++++..+++.........++++...+.++..|+.    +.-..++
T Consensus       193 Pl-~~--G---aDivvhS~TKyi~GHsDv~~G~v~~~~~~~~~l~~~~~~~G~~~sP~~a~L~lRGL~T----L~lRm~r  262 (394)
T PRK09028        193 PF-EM--G---VDISIQAATKYIVGHSDVMLGTATANEKHWDQLREQSYLMGQCTSPDDVYLAARGLRT----LGVRLAQ  262 (394)
T ss_pred             CH-HC--C---CCEEEEECCCEECCCCCCCCEEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCC----HHHHHHH
T ss_conf             21-20--7---9889982770104887740316746889999999999871677887899999836785----9999999


Q ss_pred             CCCCCCCHHHHHHCCCCCE
Q ss_conf             1000000024553047760
Q gi|254780602|r  298 FEYRRDLCVAQLQGVPGIR  316 (400)
Q Consensus       298 ~~~~r~~~~~~L~~~~g~~  316 (400)
                      -.++...+.+.|++.|.++
T Consensus       263 ~~~nA~~vA~~L~~hp~V~  281 (394)
T PRK09028        263 HEKNALKVANWLATRPEVD  281 (394)
T ss_pred             HHHHHHHHHHHHHCCCCCC
T ss_conf             9999999999986099987


No 156
>PRK07050 cystathionine beta-lyase; Provisional
Probab=99.72  E-value=1.8e-17  Score=126.52  Aligned_cols=223  Identities=16%  Similarity=0.173  Sum_probs=143.5

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----CCCCCCC
Q ss_conf             699877898999999998642101333322332334543333222222233223222233332322222----2222222
Q gi|254780602|r   63 KYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDM----VALCGGI  138 (400)
Q Consensus        63 ~Y~~~~G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l~~~~~~~~~~Gd~Vlv~~P~y~~y~~~----~~~~g~~  138 (400)
                      -|+- .|.|- ++++.+.+....|    .+.-++++.+..||..++.+++.+||+|+++++.|..-...    +...|.+
T Consensus        58 ~Y~R-~~nPT-~~~lE~~la~LEg----~~~a~~~sSGmaAi~~~ll~ll~~Gd~vv~~~~~Yg~T~~~~~~~l~~~Gi~  131 (394)
T PRK07050         58 RYGL-HATPT-SLALAQRLAEIEG----GRHALLQPSGLAAISNVYFGLVKAGDDVLIPDNVYGPNRDFGEWLAKDFGIT  131 (394)
T ss_pred             EEEC-CCCHH-HHHHHHHHHHHHC----CCEEEEECCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHCCCEE
T ss_conf             2558-88865-9999999999829----9749996578999999999960799857835666333899999875318879


Q ss_pred             CCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC
Q ss_conf             22222222232221033310001221220121135421000012333321112233333201110122110000012233
Q gi|254780602|r  139 PVFVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFS  218 (400)
Q Consensus       139 ~~~v~~~~~~~~~~d~~~l~~~i~~~~k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~  218 (400)
                      +.+++.       .|+++++++++++||+||+=+|.|||-.+.+   +++|+++| +++++++++|..+.--.+    ..
T Consensus       132 v~f~d~-------~d~~~~~~~i~~~Tkli~~Esp~NP~l~v~D---i~~ia~~A-~~~g~~~vVDNT~atP~~----~~  196 (394)
T PRK07050        132 VRFYDP-------MIGAGIADLIQPNTRLIWLEAPGSVTMEVPD---VPAITAAA-RARGVVTAIDNTWSAGLA----FK  196 (394)
T ss_pred             EEEECC-------CCHHHHHHHCCCCCEEEEEECCCCCCCEECC---HHHHHHHH-HHCCCEEEEECCCCCCCC----CC
T ss_conf             999799-------9989998436866449998448987625437---29999999-875986998578668650----06


Q ss_pred             CCCCCCCCCCCEEEEECCCCCCCCCCCCC-CCCCC-CHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             22211123332257414654432234454-44221-10122687531001222332222222222223467643222222
Q gi|254780602|r  219 NIVNVEPSLYERTLVVNGVSKAYAMTGLR-IGYAA-GALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGPQDFVVNNRK  296 (400)
Q Consensus       219 s~~~~~~~~~~~~i~~~S~SK~~~~~G~R-iG~~v-~~~~li~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~  296 (400)
                      ++ .+  +   --|++.|.+|.++--|=- .|.++ .++++.+++...+.....++++...+.++..|+.    +.-..+
T Consensus       197 Pl-~~--G---aDiVihS~TKyi~GHsDvl~G~vv~~~~~~~~~l~~~~~~~G~~~sp~~a~l~~rGL~T----L~lRm~  266 (394)
T PRK07050        197 PF-EH--G---VDISVQALTKYQSGGSDVLMGATITADAELHAKLKLARMRLGIGVSADDCSLVLRGLPS----MQVRFD  266 (394)
T ss_pred             CC-CC--C---CCEEEEECCEEECCCCCCCCCCEECCCHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCC----HHHHHH
T ss_conf             31-04--6---98999506634437888767736569999999999999862677898999999748984----788899


Q ss_pred             CCCCCCCCHHHHHHCCCCCE
Q ss_conf             11000000024553047760
Q gi|254780602|r  297 IFEYRRDLCVAQLQGVPGIR  316 (400)
Q Consensus       297 ~~~~~r~~~~~~L~~~~g~~  316 (400)
                      +-.++...+.+.|++.|.++
T Consensus       267 r~~~nA~~lA~~L~~hp~V~  286 (394)
T PRK07050        267 AHSRSALELAQWLKARPEIA  286 (394)
T ss_pred             HHHHHHHHHHHHHHHCCCEE
T ss_conf             99999999999986189810


No 157
>PRK08064 cystathionine beta-lyase; Provisional
Probab=99.72  E-value=3.5e-17  Score=124.70  Aligned_cols=223  Identities=19%  Similarity=0.242  Sum_probs=138.5

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----CCCCCC
Q ss_conf             5699877898999999998642101333322332334543333222222233223222233332322222----222222
Q gi|254780602|r   62 TKYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDM----VALCGG  137 (400)
Q Consensus        62 ~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l~~~~~~~~~~Gd~Vlv~~P~y~~y~~~----~~~~g~  137 (400)
                      +.|+-. |.| .++++.+.+...-|    .+.-++++.+..|+..++. ++.+||+|+++...|..-...    +...|.
T Consensus        46 y~Y~R~-~nP-T~~~Le~~la~LE~----~~~a~~~~SGmaAi~~~l~-~l~~Gd~vv~~~~~Yg~T~~l~~~~l~~~Gi  118 (390)
T PRK08064         46 YDYSRS-GNP-TREALEDIIAELEG----GTKGFAFASGMAAISTAFL-LLSKGDHVLISEDVYGGTYRMITEVLSRFGI  118 (390)
T ss_pred             CEEECC-CCH-HHHHHHHHHHHHHC----CCCEEEHHHHHHHHHHHHH-HHCCCCEEEEECCCCCCHHHHHHHHHHCCCE
T ss_conf             035489-886-69999999999829----9765502339999999999-8679999998488856799999867650987


Q ss_pred             CCCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCC
Q ss_conf             22222222223222103331000122122012113542100001233332111223333320111012211000001223
Q gi|254780602|r  138 IPVFVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQF  217 (400)
Q Consensus       138 ~~~~v~~~~~~~~~~d~~~l~~~i~~~~k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~  217 (400)
                      ++.+++.       .|+++++++++++||+||+=+|.|||..+.+   +++|+++| +++++++++|..+.--.+    +
T Consensus       119 ~~~f~d~-------~d~~~~~~~i~~~Tklv~~EspsNP~l~v~D---i~~i~~iA-~~~g~~~vVDNT~atP~~----~  183 (390)
T PRK08064        119 EHTFVDM-------TNLEEVAQNIKPNTKLFYVETPSNPLLKVTD---IRGVVKLA-KAHGCLTFVDNTFLTPLL----Q  183 (390)
T ss_pred             EEEEECC-------CCHHHHHHHCCCCCEEEEEECCCCCCCCCCC---CHHHHHHH-HHCCCEEEEECCCCCCCC----C
T ss_conf             9999788-------5737799747888459999789998874127---19999999-883996997377335043----6


Q ss_pred             CCCCCCCCCCCCEEEEECCCCCCCCCCC-CCCCCCC-CHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             3222111233322574146544322344-5444221-1012268753100122233222222222222346764322222
Q gi|254780602|r  218 SNIVNVEPSLYERTLVVNGVSKAYAMTG-LRIGYAA-GALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGPQDFVVNNR  295 (400)
Q Consensus       218 ~s~~~~~~~~~~~~i~~~S~SK~~~~~G-~RiG~~v-~~~~li~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~  295 (400)
                      .++ .+  +   --|++.|+||.++--| .=.|.++ .++++.+.+...+......+++...+.++..|+.    +.-..
T Consensus       184 ~Pl-~~--G---aDivihS~TKyi~Ghsd~l~G~vv~~~~~~~~~~~~~~~~~G~~l~p~~a~l~lrgl~T----L~lRm  253 (390)
T PRK08064        184 KPL-DL--G---ADVVLHSATKFLAGHSDVLAGLAVVKDEELAQKLYFLQNSFGAVLGVQDCWLVLRGLKT----LHVRL  253 (390)
T ss_pred             CHH-HH--C---CCEEEEECCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCC----HHHHH
T ss_conf             857-74--8---86999963631158876404168617889999999999850776790567898725686----88999


Q ss_pred             CCCCCCCCCHHHHHHCCCCCE
Q ss_conf             211000000024553047760
Q gi|254780602|r  296 KIFEYRRDLCVAQLQGVPGIR  316 (400)
Q Consensus       296 ~~~~~~r~~~~~~L~~~~g~~  316 (400)
                      ++-.++...+.+.|++.|.++
T Consensus       254 ~~~~~nA~~iA~~L~~hp~V~  274 (390)
T PRK08064        254 EHSAATANKIAQYLQEHPKVQ  274 (390)
T ss_pred             HHHHHHHHHHHHHHHHCCCCC
T ss_conf             999999999999997199906


No 158
>PRK07811 cystathionine gamma-synthase; Provisional
Probab=99.72  E-value=3.2e-17  Score=124.98  Aligned_cols=223  Identities=16%  Similarity=0.209  Sum_probs=139.7

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----CCCCCCC
Q ss_conf             699877898999999998642101333322332334543333222222233223222233332322222----2222222
Q gi|254780602|r   63 KYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDM----VALCGGI  138 (400)
Q Consensus        63 ~Y~~~~G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l~~~~~~~~~~Gd~Vlv~~P~y~~y~~~----~~~~g~~  138 (400)
                      -|+- .|.| .++++.+.+...-|    .+.-++++.+..||..++.+++++||+|++.+..|..-...    +...|.+
T Consensus        51 ~YsR-~~nP-T~~~le~~la~LEg----~~~a~~~sSGmaAi~~~l~~ll~~Gd~iv~~~~~YggT~~l~~~~l~~~Gi~  124 (386)
T PRK07811         51 EYAR-TGNP-TRTALEEQLAALEG----GKYGRAFSSGMAATDCLLRAVLRPGDHIVIPNDAYGGTFRLIDKVFTRWGVE  124 (386)
T ss_pred             CCCC-CCCH-HHHHHHHHHHHHHC----CCCEEEECCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHCCEE
T ss_conf             1539-9886-79999999999849----9878983339999999999983899989937876521999999998735804


Q ss_pred             CCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC
Q ss_conf             22222222232221033310001221220121135421000012333321112233333201110122110000012233
Q gi|254780602|r  139 PVFVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFS  218 (400)
Q Consensus       139 ~~~v~~~~~~~~~~d~~~l~~~i~~~~k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~  218 (400)
                      +.+++.       -|+++++++++++||+||+-+|.|||..+.+   +++|+++| +++++.+|+|..+.--.+    +.
T Consensus       125 ~~~vd~-------~d~~~~~~~i~~~Tkli~~Esp~NP~l~v~D---i~~i~~ia-~~~g~~~vVDNT~atP~~----~~  189 (386)
T PRK07811        125 YTPVDL-------SDLDAVRAAITPRTKLIWVETPTNPLLSITD---IAAIAELA-HDAGAKVVVDNTFASPYL----QQ  189 (386)
T ss_pred             EEEECC-------CCHHHHHHHCCCCCEEEEEECCCCCCCCCCC---CHHHHHHH-HHCCCEEEEECCCCCCCE----EC
T ss_conf             997788-------7878898655888349999779998764058---58999999-855781883167335204----25


Q ss_pred             CCCCCCCCCCCEEEEECCCCCCCCCCCCCC-CCCCC-HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             222111233322574146544322344544-42211-0122687531001222332222222222223467643222222
Q gi|254780602|r  219 NIVNVEPSLYERTLVVNGVSKAYAMTGLRI-GYAAG-ALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGPQDFVVNNRK  296 (400)
Q Consensus       219 s~~~~~~~~~~~~i~~~S~SK~~~~~G~Ri-G~~v~-~~~li~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~  296 (400)
                      ++ .+  +   --|++.|.||.++--|=-+ |.+++ ++++.+.+...+.....++++...+.++..|+.    +.-..+
T Consensus       190 Pl-~~--G---aDiVvhS~TKyl~GHsDvl~G~vv~~~~~~~~~~~~~~~~~G~~~sP~~a~l~lrGL~T----L~lRm~  259 (386)
T PRK07811        190 PL-AL--G---ADVVLHSTTKYIGGHSDVVGGALVTNDEELDEEFAFLQNGAGAVPGPFDAYLTMRGLKT----LAVRMD  259 (386)
T ss_pred             HH-HH--C---CCEEEEECCCEECCCCCCEEEEEEECCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----HHHHHH
T ss_conf             23-40--7---98799734440057877242478608289999999999742787885788899865736----999999


Q ss_pred             CCCCCCCCHHHHHHCCCCCE
Q ss_conf             11000000024553047760
Q gi|254780602|r  297 IFEYRRDLCVAQLQGVPGIR  316 (400)
Q Consensus       297 ~~~~~r~~~~~~L~~~~g~~  316 (400)
                      +-.++...+.+.|++.|.++
T Consensus       260 ~~~~nA~~lA~~L~~hp~V~  279 (386)
T PRK07811        260 RHSENAEAVAEFLDGHPEVS  279 (386)
T ss_pred             HHHHHHHHHHHHHHCCCCCC
T ss_conf             99999999999997299837


No 159
>PRK05967 cystathionine beta-lyase; Provisional
Probab=99.72  E-value=9.5e-17  Score=122.08  Aligned_cols=224  Identities=15%  Similarity=0.193  Sum_probs=146.4

Q ss_pred             CCCCCC-CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----CCCCCC
Q ss_conf             699877-898999999998642101333322332334543333222222233223222233332322222----222222
Q gi|254780602|r   63 KYTAVA-GISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDM----VALCGG  137 (400)
Q Consensus        63 ~Y~~~~-G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l~~~~~~~~~~Gd~Vlv~~P~y~~y~~~----~~~~g~  137 (400)
                      +|.-++ |.| .++++.+.+...-|    .+.-++++.+..||..++.+++++||+|++.+..|..-...    +...|.
T Consensus        55 ~y~Y~R~~NP-T~~~lE~~la~LEg----g~~a~~~sSGmaAi~~~ll~~l~~Gdhiv~~~~~YggT~~l~~~~l~~~Gi  129 (392)
T PRK05967         55 KYTYGTRGTP-TTDALCKAIDALEG----SAGTILVPSGLAAVTVPLLGFLSAGDHALIVDSVYYPTRHFADTMLKRLGV  129 (392)
T ss_pred             CCEEECCCCH-HHHHHHHHHHHHCC----CCCEEEECCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHCCE
T ss_conf             9304589887-79999999999809----987799457799999999997389988994489844589999998763686


Q ss_pred             CCCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCC
Q ss_conf             22222222223222103331000122122012113542100001233332111223333320111012211000001223
Q gi|254780602|r  138 IPVFVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQF  217 (400)
Q Consensus       138 ~~~~v~~~~~~~~~~d~~~l~~~i~~~~k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~  217 (400)
                      ++.+++.       -|.++++++++++||+||+-+|.|||..+.+   +++|+++| +++++.+|+|..+.--.+    .
T Consensus       130 ~v~~vd~-------~~~~~~~~~i~~~Tklv~~Etp~NP~l~v~D---i~~ia~~A-~~~g~~~vVDNTfatP~~----~  194 (392)
T PRK05967        130 EVEYYDP-------EIGAGIEKLMRPNTKVVFTESPGSNTFEIQD---IPAIAEAA-HRHGAIVMMDNTWATPLY----F  194 (392)
T ss_pred             EEEEECC-------CCHHHHHHHCCCCCEEEEEECCCCCCCEEEC---HHHHHHHH-HHCCCEEEEECCCCCCCE----E
T ss_conf             9999889-------9999999744878659998558998645535---49999999-876987996177545342----1


Q ss_pred             CCCCCCCCCCCCEEEEECCCCCCCCCCC-CCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             3222111233322574146544322344-544422110122687531001222332222222222223467643222222
Q gi|254780602|r  218 SNIVNVEPSLYERTLVVNGVSKAYAMTG-LRIGYAAGALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGPQDFVVNNRK  296 (400)
Q Consensus       218 ~s~~~~~~~~~~~~i~~~S~SK~~~~~G-~RiG~~v~~~~li~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~  296 (400)
                      .++ .+  +   --|++.|.+|.++--| .=.|.++++++.++++...+.....+++++..+.++..|+.    +.-..+
T Consensus       195 ~Pl-~~--G---ADiVvhS~TKyl~GHsDvl~G~v~~~~~~~~~l~~~~~~~G~~l~P~~a~l~lrGl~T----L~lRm~  264 (392)
T PRK05967        195 RPL-DF--G---VDISIHAATKYPSGHSDILLGTVSANEKCWPQLLEAHGTLGLCAGPDDTYQILRGLRT----MGIRLE  264 (392)
T ss_pred             CCC-CC--C---CCEEEEECCCCCCCCCCCCCCEECCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCH----HHHHHH
T ss_conf             456-55--6---8689996664666887520432337778889999998750466797888998717760----999999


Q ss_pred             CCCCCCCCHHHHHHCCCCCE
Q ss_conf             11000000024553047760
Q gi|254780602|r  297 IFEYRRDLCVAQLQGVPGIR  316 (400)
Q Consensus       297 ~~~~~r~~~~~~L~~~~g~~  316 (400)
                      +-.++...+.+.|++.|.++
T Consensus       265 r~~~nA~~lA~~L~~hp~V~  284 (392)
T PRK05967        265 HHRKSALEIARWLEGRPMVA  284 (392)
T ss_pred             HHHHHHHHHHHHHHHCCCCC
T ss_conf             99998999999997199976


No 160
>pfam01041 DegT_DnrJ_EryC1 DegT/DnrJ/EryC1/StrS aminotransferase family. The members of this family are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions. The family includes StsA, StsC, and StsS. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase EC:2.6.1.50, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin.
Probab=99.71  E-value=9.1e-18  Score=128.28  Aligned_cols=193  Identities=21%  Similarity=0.293  Sum_probs=135.0

Q ss_pred             HHHHHHHHHHHHCCCC-CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCC
Q ss_conf             9999999999838875-6998778989999999986421013333223323345433332222222-3322322223333
Q gi|254780602|r   47 ENVKYAVVRAMERGET-KYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFNALMAT-VNMGDEVLIPRPY  124 (400)
Q Consensus        47 ~~i~~a~~~al~~~~~-~Y~~~~G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l~~~~~~~-~~~Gd~Vlv~~P~  124 (400)
                      +.-.+++.+.++++.. ++++.  ..++.+.+++|+...+        .+.++.++.||.++++++ +.+||+||+|.-+
T Consensus         5 ~~~~~~v~~~l~s~~~~~~G~~--v~~fE~~~~~~~g~k~--------~v~~~sgT~Al~lal~a~~~~~gdeVi~p~~t   74 (363)
T pfam01041         5 EEELAAVTEVLRSGWLTTGGPE--VREFEKEFAAYLGVKH--------AVAVSSGTAALHLALRALGIGPGDEVIVPSFT   74 (363)
T ss_pred             HHHHHHHHHHHHCCCCCCCCHH--HHHHHHHHHHHHCCCE--------EEEECCHHHHHHHHHHHCCCCCCCEEEECCCC
T ss_conf             8999999999973981479989--9999999999978495--------99975889999999998598892999979977


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECC
Q ss_conf             23222222222222222222222322210333100012212201211354210000123333211122333332011101
Q gi|254780602|r  125 WVSYPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISD  204 (400)
Q Consensus       125 y~~y~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~D  204 (400)
                      |+.-...+..+|++|+.++++++ .|.+|+++++++++++||+|++++.   -|..   .++++|.++| +++++.||+|
T Consensus        75 ~~at~~ai~~~G~~pvf~Dvd~~-t~~id~~~l~~~i~~~tkaIi~vh~---~G~~---~d~~~i~~~~-~~~~i~lIED  146 (363)
T pfam01041        75 FVATANAVLYLGAKPVFVDIDPD-TYNIDPAAIEAAITPRTKAIMPVHL---YGQP---ADMDAIRAIA-AEHGLPVIED  146 (363)
T ss_pred             CHHHHHHHHHCCCEEEEEECCCC-CCCCCHHHHHHHCCCCCCEEEEECC---CCCC---CCHHHHHHHH-HHCCCEEEEE
T ss_conf             59889999986997998506456-5685899999860758709998789---8986---8999999999-9849999973


Q ss_pred             CCCCCCC-CCCCCCCCCCCCCCCCCCEEEEECCC--CCCCCCCCCCCCCCCCH-HHHHHHHHHHCCCC
Q ss_conf             2211000-00122332221112333225741465--44322344544422110-12268753100122
Q gi|254780602|r  205 DIYEHIV-YRNCQFSNIVNVEPSLYERTLVVNGV--SKAYAMTGLRIGYAAGA-LSLIKSMIVLQGQQ  268 (400)
Q Consensus       205 e~Y~~l~-~~~~~~~s~~~~~~~~~~~~i~~~S~--SK~~~~~G~RiG~~v~~-~~li~~l~~~~~~~  268 (400)
                      .+++.-. |.+..   +.+..    +  +.+.||  +|.++ +|- -|.++.+ +++.+.++.++.+.
T Consensus       147 aA~a~Ga~~~gk~---~G~~g----d--~~~fSF~~~K~it-tGe-GG~i~tnd~~l~~~~r~lr~~G  203 (363)
T pfam01041       147 AAHAHGATYKGKR---VGTFG----D--AATFSFFPTKNIT-TGE-GGAVVTDDPELAERARCLRNHG  203 (363)
T ss_pred             CCCCCCCCCCCEE---CCCCC----C--CCEEECCCCCCCC-CCC-CEEEEECCHHHHHHHHHHHHCC
T ss_conf             1320267658654---35644----5--2102057876544-689-7099969999999999999659


No 161
>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional
Probab=99.71  E-value=2.7e-17  Score=125.41  Aligned_cols=200  Identities=19%  Similarity=0.282  Sum_probs=136.2

Q ss_pred             EECCCCCCCCCCCHHHHHHHHHHHHCCCCC-CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC-
Q ss_conf             665658974988999999999998388756-998778989999999986421013333223323345433332222222-
Q gi|254780602|r   34 LCLTAGEPDFDMPENVKYAVVRAMERGETK-YTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFNALMAT-  111 (400)
Q Consensus        34 i~l~~G~p~~~~p~~i~~a~~~al~~~~~~-Y~~~~G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l~~~~~~~-  111 (400)
                      |+++  .|++  .+.-.+++.++++.+... -++  -..++-+++++|+...        +.+.++.++.||.+++.++ 
T Consensus         2 Ip~~--~p~~--~~~e~~~v~~~l~sg~~~~~G~--~v~~fE~~~a~~~g~~--------~av~v~sgT~AL~lal~~l~   67 (375)
T PRK11706          2 IPFN--KPPV--VGTELDYIQEAMSSGKLSGDGG--FTRRCQQWLEQRFGCA--------KVLLTPSCTAALEMAALLLD   67 (375)
T ss_pred             CCCC--CCCC--CHHHHHHHHHHHHCCCCCCCCH--HHHHHHHHHHHHHCCC--------EEEEECCHHHHHHHHHHHCC
T ss_conf             5778--9999--9899999999997098768997--9999999999997849--------39996788999999999869


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf             33223222233332322222222222222222222232221033310001221220121135421000012333321112
Q gi|254780602|r  112 VNMGDEVLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALAD  191 (400)
Q Consensus       112 ~~~Gd~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~k~i~l~nP~NPTG~v~s~~~l~~i~~  191 (400)
                      +.+||+||+|+-+|..-...+..+|++|+.++.+++ .|.+|++.++++|+++||+|+.++-   -|..   .++++|.+
T Consensus        68 i~~gdeVivp~~tf~at~~ai~~~Ga~pvfvDid~~-t~~id~~~ie~~it~ktkaIi~Vh~---~G~~---~d~~~I~~  140 (375)
T PRK11706         68 IQPGDEVIMPSYTFVSTANAFVLRGAKIVFVDIRPD-TMNIDETLIEAAITPKTRAIVPVHY---AGVA---CEMDTIMA  140 (375)
T ss_pred             CCCCCEEEECCCCHHHHHHHHHHCCCEEEEEEECCC-CCCCCHHHHHHHHCCCCEEEEEECC---CCCC---CCHHHHHH
T ss_conf             889399998996649999999983996999971687-5776789999870867549999678---8986---67899999


Q ss_pred             CCCCCCCCEEECCCCCCCC-CCCCCCCCCCCCCCCCCCCEEEEECCC--CCCCCCCCCCCCCCCC-HHHHHHHHHHHCC
Q ss_conf             2333332011101221100-000122332221112333225741465--4432234454442211-0122687531001
Q gi|254780602|r  192 VLVRNPHVHIISDDIYEHI-VYRNCQFSNIVNVEPSLYERTLVVNGV--SKAYAMTGLRIGYAAG-ALSLIKSMIVLQG  266 (400)
Q Consensus       192 ~~a~~~~i~ii~De~Y~~l-~~~~~~~~s~~~~~~~~~~~~i~~~S~--SK~~~~~G~RiG~~v~-~~~li~~l~~~~~  266 (400)
                      +| +++++.||+|.+++.- .|+|...   .+..      .+.+.||  +|.++. | --|.++. ++++.+++..++.
T Consensus       141 ia-k~~~i~vIEDaA~a~Gs~~~g~~~---Gt~G------d~~~fSF~~~K~itt-G-eGG~i~tnd~~l~~~~~~lr~  207 (375)
T PRK11706        141 LA-KKHNLFVVEDAAQGVMSTYKGRAL---GTIG------HLGCFSFHETKNYTA-G-EGGALLINDPALIERAEIIRE  207 (375)
T ss_pred             HH-HHCCCEEEECCCCCCCCCCCCEEC---CCCC------CCCCCCCCCCCCCCC-C-CCEEEEECCHHHHHHHHHHHH
T ss_conf             88-537908983440036876676445---7679------988858988987877-6-874999799999999999998


No 162
>PRK05968 hypothetical protein; Provisional
Probab=99.71  E-value=9.1e-17  Score=122.17  Aligned_cols=233  Identities=17%  Similarity=0.173  Sum_probs=144.7

Q ss_pred             HHHHHHCCCCCCCCCC-CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             9999838875699877-898999999998642101333322332334543333222222233223222233332322222
Q gi|254780602|r   53 VVRAMERGETKYTAVA-GISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDM  131 (400)
Q Consensus        53 ~~~al~~~~~~Y~~~~-G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l~~~~~~~~~~Gd~Vlv~~P~y~~y~~~  131 (400)
                      +.+.......+|.-++ |.| .++++.+.+...-|    .+.-+.++.++.||..++.+++++||+|++.+..|..-..+
T Consensus        44 ~~~~~~~~~~g~~YsR~~NP-T~~~lE~~la~LEg----g~~a~~~sSGmaAis~~l~~ll~~Gd~iv~~~~~YggT~~l  118 (389)
T PRK05968         44 MEAVYAGETVRPIYTRGDNP-TVRAFEEMLAKLEG----AEDARGFASGMAAISSTVLSFVEPGDRIVAVRHVYPDAYRL  118 (389)
T ss_pred             HHHHHCCCCCCCEEECCCCH-HHHHHHHHHHHHHC----CCEEEEECCHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHH
T ss_conf             99874688679614289886-69999999999829----96388854889999999999608999898588766758999


Q ss_pred             ----CCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCC
Q ss_conf             ----2222222222222222322210333100012212201211354210000123333211122333332011101221
Q gi|254780602|r  132 ----VALCGGIPVFVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIY  207 (400)
Q Consensus       132 ----~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y  207 (400)
                          +...|.++.+++.       -|.+.+++++ ++||+||+-+|.|||..+.+   +++|+++ ++++++.+++|..+
T Consensus       119 ~~~~l~~~GI~v~~vd~-------~d~~~~~~~i-~~Tklv~~EtpsNP~l~v~D---I~~ia~i-A~~~g~~~vVDNTf  186 (389)
T PRK05968        119 FGTLLKRMGVEVDYVDG-------RDEEAVAKAL-PGAKLLYLESPTSWVFELQD---IAALAAL-AKRHGVVTVIDNSW  186 (389)
T ss_pred             HHHHHHCCCCEEEEECC-------CCHHHHHHCC-CCCCEEEEECCCCCCCCCCC---HHHHHHH-HHHCCCEEEEECCC
T ss_conf             99888607846999689-------9999999627-68728999789998872738---9999999-99839959997786


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCC-CCCCCCCHHHHHHHHHHHC-CCCCCCCCCCCCCCCCCCCC
Q ss_conf             100000122332221112333225741465443223445-4442211012268753100-12223322222222222234
Q gi|254780602|r  208 EHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTGL-RIGYAAGALSLIKSMIVLQ-GQQTSGACSIAQWAAVEALN  285 (400)
Q Consensus       208 ~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~~~G~-RiG~~v~~~~li~~l~~~~-~~~~~~~~~~~q~a~~~~l~  285 (400)
                      .--.+    ..++ .+  +   --|++.|.||.++--|- =.|.++++++.+.++.... .....++++...+.++..|+
T Consensus       187 atP~~----~~Pl-~~--G---aDivvhS~TKyi~GHsDvl~G~v~~~~~~~~~~~~~~~~~lG~~lsP~~a~l~lRGL~  256 (389)
T PRK05968        187 ASPVF----QRPI-TL--G---VDLVIHSASKYLGGHSDTVAGVVAGSKEHIARINAEAYPYLGGKLSPFEAWLLLRGLR  256 (389)
T ss_pred             CHHHH----CCHH-HH--C---CCEEEEECCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCC
T ss_conf             11642----5842-40--7---9879970453446898844269945699999999999986277788588899984798


Q ss_pred             CCCCCCCCCCCCCCCCCCCHHHHHHCCCCCE
Q ss_conf             6764322222211000000024553047760
Q gi|254780602|r  286 GPQDFVVNNRKIFEYRRDLCVAQLQGVPGIR  316 (400)
Q Consensus       286 ~~~~~~~~~~~~~~~~r~~~~~~L~~~~g~~  316 (400)
                      .    +.-..++-.++...+.+.|++.|.++
T Consensus       257 T----L~lRm~rh~~nA~~vA~~L~~hp~V~  283 (389)
T PRK05968        257 T----LPLRMKAHEASALLIARRLKAHPVVE  283 (389)
T ss_pred             C----HHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             6----99999999999999999996199986


No 163
>PRK08045 cystathionine gamma-synthase; Provisional
Probab=99.71  E-value=8e-17  Score=122.52  Aligned_cols=223  Identities=14%  Similarity=0.185  Sum_probs=138.9

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----CCCCCCCC
Q ss_conf             69987789899999999864210133332233233454333322222223322322223333232222----22222222
Q gi|254780602|r   63 KYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPD----MVALCGGI  138 (400)
Q Consensus        63 ~Y~~~~G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l~~~~~~~~~~Gd~Vlv~~P~y~~y~~----~~~~~g~~  138 (400)
                      -|+- .|.|- ++++.+.+....|    .+.-++++.+..||..++.+++++||+|+++++.|..-..    .+...|.+
T Consensus        45 ~Y~R-~gnPT-~~~lE~~la~LEg----~~~a~~~~SGMaAis~~l~~~l~~Gd~vv~~~~~Yg~T~~l~~~~~~~~gi~  118 (386)
T PRK08045         45 DYSR-RGNPT-RDVVQRALAELEG----GAGAVLTNTGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCYR  118 (386)
T ss_pred             CCCC-CCCHH-HHHHHHHHHHHHC----CCCEEEECCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHCCCCEE
T ss_conf             4438-98866-9999999999809----9837985678999999999707999989983786348999999872079579


Q ss_pred             CCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC
Q ss_conf             22222222232221033310001221220121135421000012333321112233333201110122110000012233
Q gi|254780602|r  139 PVFVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFS  218 (400)
Q Consensus       139 ~~~v~~~~~~~~~~d~~~l~~~i~~~~k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~  218 (400)
                      +.+++.       -|.+.++++++++||+||+-+|.|||-.+.+   +++|+++| +++++.+++|..+.--.+    +.
T Consensus       119 v~~~d~-------~d~~~~~~~i~~~Tklv~~EspsNP~l~v~D---i~~i~~~a-~~~g~~~vvDNT~atP~~----~~  183 (386)
T PRK08045        119 VLFVDQ-------GDEQALRAALAEKPKLVLVESPSNPLLRVVD---IAKICHLA-REAGAVSVVDNTFLSPAL----QN  183 (386)
T ss_pred             EEEECC-------CCHHHHHHHCCCCCEEEEEECCCCCCCEECC---CHHHHHHH-HHCCCEEEEECCCCCHHC----CC
T ss_conf             999699-------9989999753778559999779998761057---69999999-976998998275232311----27


Q ss_pred             CCCCCCCCCCCEEEEECCCCCCCCCCCC-CCCCCCC-HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             2221112333225741465443223445-4442211-0122687531001222332222222222223467643222222
Q gi|254780602|r  219 NIVNVEPSLYERTLVVNGVSKAYAMTGL-RIGYAAG-ALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGPQDFVVNNRK  296 (400)
Q Consensus       219 s~~~~~~~~~~~~i~~~S~SK~~~~~G~-RiG~~v~-~~~li~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~  296 (400)
                      ++ .+  +   --|++.|.||.++--|= =.|.+++ .+++..++...+......++....+.+...|+.    +.-..+
T Consensus       184 Pl-~~--G---aDivvhS~TKyi~GhsD~l~G~vv~~~~~~~~~~~~~~~~~G~~~~p~~a~l~~rGL~T----L~lRm~  253 (386)
T PRK08045        184 PL-AL--G---ADLVLHSCTKYLNGHSDVVAGVVIAKDPEVVTELAWWANNIGVTGGAFDSYLLLRGLRT----LVPRME  253 (386)
T ss_pred             CC-CC--C---CCEEEEECCEEECCCCCCEEEEEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCC----HHHHHH
T ss_conf             30-03--8---87899966613058877234899817788999999999985877898899999836887----788999


Q ss_pred             CCCCCCCCHHHHHHCCCCCE
Q ss_conf             11000000024553047760
Q gi|254780602|r  297 IFEYRRDLCVAQLQGVPGIR  316 (400)
Q Consensus       297 ~~~~~r~~~~~~L~~~~g~~  316 (400)
                      .-.++...+.+.|++.|.++
T Consensus       254 ~~~~nA~~lA~~L~~hp~V~  273 (386)
T PRK08045        254 LAQRNAQAIVKYLQTQPLVK  273 (386)
T ss_pred             HHHHHHHHHHHHHHCCCCCC
T ss_conf             99999999999986399853


No 164
>PRK08861 cystathionine gamma-synthase; Provisional
Probab=99.71  E-value=9.8e-17  Score=122.00  Aligned_cols=223  Identities=13%  Similarity=0.132  Sum_probs=139.5

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----CCCCCCCC
Q ss_conf             69987789899999999864210133332233233454333322222223322322223333232222----22222222
Q gi|254780602|r   63 KYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPD----MVALCGGI  138 (400)
Q Consensus        63 ~Y~~~~G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l~~~~~~~~~~Gd~Vlv~~P~y~~y~~----~~~~~g~~  138 (400)
                      .|+- .|.| .++++.+.+...-|    .+.-++++.+..||..++.+++.+||+|+++++.|..-..    .....|.+
T Consensus        46 ~Y~R-~~nP-T~~~le~~la~LEg----~~~a~~~~SGmaAis~~~l~ll~~Gd~iv~~~~~Yg~T~~l~~~~l~~~gi~  119 (388)
T PRK08861         46 DYTR-SGNP-NRGLLEQALSELES----GKGAVVTNCGTSALNLWVSALLGPDDLIVAPHDCYGGTYRLFNTRANKGDFK  119 (388)
T ss_pred             EECC-CCCH-HHHHHHHHHHHHHC----CCCEEEECCHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHCCEE
T ss_conf             0448-9886-59999999999849----9837996378999999999836899989986898550689999898628869


Q ss_pred             CCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC
Q ss_conf             22222222232221033310001221220121135421000012333321112233333201110122110000012233
Q gi|254780602|r  139 PVFVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFS  218 (400)
Q Consensus       139 ~~~v~~~~~~~~~~d~~~l~~~i~~~~k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~  218 (400)
                      +.+++.       .|.++++++++++||+||+=+|.|||-.+.+   +++|+++ ++++++.+++|..+.--.+    +.
T Consensus       120 ~~~~d~-------~d~~~~~~~i~~~Tkli~~EspsNP~l~v~D---i~~i~~~-A~~~g~~~vvDNT~atP~~----~~  184 (388)
T PRK08861        120 VLFVDQ-------SDAAALDAALAKKPKLILLETPSNPLVRVVD---IAEVCQK-AKQVGALVAVDNTFLTPVL----QK  184 (388)
T ss_pred             EEEECC-------CCCHHHHHHCCCCCEEEEEECCCCCCCEEEC---CHHHHHH-HHHCCCEEEEECCCCHHHH----CC
T ss_conf             999899-------9827899734878539998448999836656---5999999-9873995999788512530----37


Q ss_pred             CCCCCCCCCCCEEEEECCCCCCCCCCCCC-CCCCCC-HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             22211123332257414654432234454-442211-0122687531001222332222222222223467643222222
Q gi|254780602|r  219 NIVNVEPSLYERTLVVNGVSKAYAMTGLR-IGYAAG-ALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGPQDFVVNNRK  296 (400)
Q Consensus       219 s~~~~~~~~~~~~i~~~S~SK~~~~~G~R-iG~~v~-~~~li~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~  296 (400)
                      ++ .+  +   --|++.|.||.++--|== .|.+++ ++++.+.+...+......+++...+.+...|+.    +.-..+
T Consensus       185 Pl-~~--G---aDivvhS~TKyi~GHsDvlgG~vv~~~~~~~~~l~~~~~~~G~~~sP~~a~l~~RGL~T----L~lRm~  254 (388)
T PRK08861        185 PL-EL--G---ADFVIHSTTKYINGHSDVIGGVLITKTKEHAEELAWWGNCIGATGTPFDSYMTLRGIRT----LGARMR  254 (388)
T ss_pred             CH-HC--C---CCEEEEECCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCC----HHHHHH
T ss_conf             21-03--8---87899962401258887502189507488889999999851777886777888547897----889999


Q ss_pred             CCCCCCCCHHHHHHCCCCCE
Q ss_conf             11000000024553047760
Q gi|254780602|r  297 IFEYRRDLCVAQLQGVPGIR  316 (400)
Q Consensus       297 ~~~~~r~~~~~~L~~~~g~~  316 (400)
                      .-.++...+.+.|++.|.++
T Consensus       255 ~~~~nA~~lA~~L~~hp~V~  274 (388)
T PRK08861        255 VHEESAQEILKYLQTQSLVG  274 (388)
T ss_pred             HHHHHHHHHHHHHHHCCCCC
T ss_conf             99986999999998499927


No 165
>pfam01212 Beta_elim_lyase Beta-eliminating lyase.
Probab=99.71  E-value=2.6e-18  Score=131.56  Aligned_cols=261  Identities=20%  Similarity=0.189  Sum_probs=170.5

Q ss_pred             CCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             88999999999998388756998778989999999986421013333223323345433332222222332232222333
Q gi|254780602|r   44 DMPENVKYAVVRAMERGETKYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFNALMATVNMGDEVLIPRP  123 (400)
Q Consensus        44 ~~p~~i~~a~~~al~~~~~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l~~~~~~~~~~Gd~Vlv~~P  123 (400)
                      .+.+.++++|.++. .|.-.|+..+-..+|.+.+++.+    |.+    ..++.+.++.+..+++.++++|||+|++..+
T Consensus         9 ~~t~~m~~a~~~a~-~Gdd~Yg~D~t~~~le~~~a~l~----G~e----aalfv~sGT~AN~ial~~~~~~g~~vi~~~~   79 (288)
T pfam01212         9 GPTPAMREAMAAAM-VGDEVYGGDPTVNRLEDRVAELF----GKE----AALFVPSGTMANQLALMAHCRRGDEVICGEP   79 (288)
T ss_pred             CCCHHHHHHHHHCC-CCCCCCCCCHHHHHHHHHHHHHH----CCC----EEEECCCCHHHHHHHHHHHCCCCCEEEEECC
T ss_conf             89999999998233-57732267989999999999986----998----2998688679999999983889988998357


Q ss_pred             CCCC-CCC--CCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCC-------CCCCCEEECCCCCCC-CCCCCCCCCCCCCCC
Q ss_conf             3232-222--22222222222222222322210333100012-------212201211354210-000123333211122
Q gi|254780602|r  124 YWVS-YPD--MVALCGGIPVFVDTQQDDNFQVSPEKLEQAIT-------PKTKWLFLNSPSNPS-GVVYSQNRLRALADV  192 (400)
Q Consensus       124 ~y~~-y~~--~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~-------~~~k~i~l~nP~NPT-G~v~s~~~l~~i~~~  192 (400)
                      +... ++.  ...+.|+++++++.++++  .+|+++|+++++       +++++|.+.||+|.. |++||.+++++|.++
T Consensus        80 sHi~~~E~ga~~~~~G~~~~~l~~~~~G--~~~~~~l~~~i~~~~~~h~~~~~~v~le~t~n~~gG~~~~~~el~~i~~~  157 (288)
T pfam01212        80 AHIYFDETGGHAELGGAQPVPLPGAEAG--KLDLEDLEAAIRPVGDIHFPPTGLISLENTHNSAGGQVVSLEELREIRAI  157 (288)
T ss_pred             CCCEEECCCHHHHHCCCEEEECCCCCCC--CCCHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCCEECCHHHHHHHHHH
T ss_conf             6765456777999829825844787789--82999999987644985467654799995544889665578999999999


Q ss_pred             CCCCCCCEEECCCCCC--CCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf             3333320111012211--00000122332221112333225741465443223445444221101226875310012223
Q gi|254780602|r  193 LVRNPHVHIISDDIYE--HIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTGLRIGYAAGALSLIKSMIVLQGQQTS  270 (400)
Q Consensus       193 ~a~~~~i~ii~De~Y~--~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~v~~~~li~~l~~~~~~~~~  270 (400)
                      | +++++.+..|-+=-  -....+.   ++..+...  -.++++ |+||..++|+  -+.+++++++++...+.+.....
T Consensus       158 a-~~~gl~lHmDGARl~nA~~a~~~---~~~e~~~~--~D~v~~-~~sK~lga~~--Gavl~g~~~~i~~a~~~rk~lGg  228 (288)
T pfam01212       158 A-REHGIPLHLDGARLANAAVALGV---IVKEITSY--ADSVSM-SLSKGLGAPV--GSVLAGSDDFIAYAIRQRKYLGG  228 (288)
T ss_pred             H-HHCCCEEEEHHHHHHHHHHHCCC---CHHHHHCC--CCEEEE-EEECCCCCCE--EEEEEECHHHHHHHHHHHHHHHC
T ss_conf             9-98099376308789888876099---98898546--888999-8435788610--03898289999999999999726


Q ss_pred             CCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEECC-CCEEEEE
Q ss_conf             3222--22222222234676432222221100000002455304776033027-4089986
Q gi|254780602|r  271 GACS--IAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQGVPGIRYMIPD-GAFYLYP  328 (400)
Q Consensus       271 ~~~~--~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~~~~~L~~~~g~~~~~p~-g~~y~~~  328 (400)
                      ++..  +.-.+++.+|+..   +.. ...-.++.+.+.+.|+.++++.+.+++ -+.++|+
T Consensus       229 ~mrq~g~~aaa~~~aL~~~---~~~-l~~dh~~A~~La~~l~~~~~~~~~~~~t~~~~v~v  285 (288)
T pfam01212       229 GMRQAGVLAAAGLRALEEG---VAR-LGRDHATARRLAEGLELLRGVIPRRVYTNTHMVFV  285 (288)
T ss_pred             CHHHHHHHHHHHHHHHHHC---HHH-HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEE
T ss_conf             4256679999999999808---988-88889999999999976899322678786059996


No 166
>KOG1549 consensus
Probab=99.71  E-value=1.6e-17  Score=126.86  Aligned_cols=204  Identities=18%  Similarity=0.190  Sum_probs=145.5

Q ss_pred             HCCCCEEECCCCCCCCCCCHHHHHHHHHHHHC----CCCC-CC--CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf             86997266565897498899999999999838----8756-99--87789899999999864210133332233233454
Q gi|254780602|r   28 SKGIDVLCLTAGEPDFDMPENVKYAVVRAMER----GETK-YT--AVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGA  100 (400)
Q Consensus        28 ~~g~~ii~l~~G~p~~~~p~~i~~a~~~al~~----~~~~-Y~--~~~G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~  100 (400)
                      ..|.+.+.|..|.- -|.|+.|.+|+.+.+.+    +... |.  ...+..+.|+.||+.+      +.|+++|++|+|+
T Consensus        39 ~~~~~~vyld~~at-~p~~~~Vldam~~~~~~~~~nPh~~~y~w~~~~~~E~aR~~VAklI------nAd~~dIiFts~A  111 (428)
T KOG1549          39 HHGTRPVYLDNQAT-GPMDPRVLDAMLPYLLEYLGNPHSRSYGWKAEDAVEAAREQVAKLI------NADPSDIVFTSGA  111 (428)
T ss_pred             CCCCCCEEEECCCC-CCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHH------CCCCCCEEEECCC
T ss_conf             47786079706767-8999899999999999852599855420233589999999999984------8997737994796


Q ss_pred             CCCCCCCCCCCCC-CCC----CCCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEECC
Q ss_conf             3333222222233-223----2222333323222222---2222222222222223222103331000122122012113
Q gi|254780602|r  101 KHVIFNALMATVN-MGD----EVLIPRPYWVSYPDMV---ALCGGIPVFVDTQQDDNFQVSPEKLEQAITPKTKWLFLNS  172 (400)
Q Consensus       101 ~~~l~~~~~~~~~-~Gd----~Vlv~~P~y~~y~~~~---~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~k~i~l~n  172 (400)
                      ++++.++++.+.. .+|    +|++..-.|++....+   +..|..++++|.. +. ...|.+.+++.|+++||++.+..
T Consensus       112 TEs~Nlvl~~v~~~~~~~~~k~iitl~~eH~~v~~s~~~l~~~g~~Vt~lpv~-~~-~~~d~~~~~~~i~~~T~lv~I~~  189 (428)
T KOG1549         112 TESNNLVLKGVARFFGDKTKKHIITLQTEHPCVLDSCRALQEEGLEVTYLPVE-DS-GLVDISKLREAIRSKTRLVSIMH  189 (428)
T ss_pred             HHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHHHHHHHCCEEEEEECCC-CC-CCCCHHHHHHHCCCCCEEEEEEE
T ss_conf             07888999872202456666369995045760048999998668279991568-65-52118999975387743999970


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCC
Q ss_conf             54210000123333211122333332011101221100000122332221112333225741465443223445444221
Q gi|254780602|r  173 PSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTGLRIGYAA  252 (400)
Q Consensus       173 P~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~v  252 (400)
                      -+|=+|.+.+-+|   |+++| +++++.++.|.+.+-    |.-......+..     -+...|..|.|+.||  +|++.
T Consensus       190 Vnn~~gv~~Pv~E---I~~ic-r~~~v~v~~DaAQav----G~i~vDV~eln~-----D~~s~s~HK~ygp~~--iGaLY  254 (428)
T KOG1549         190 VNNEIGVLQPVKE---IVKIC-REEGVQVHVDAAQAV----GKIPVDVQELNA-----DFLSISAHKIYGPPG--IGALY  254 (428)
T ss_pred             CCCCCCCCCCHHH---HHHHH-CCCCCEEEEEHHHHC----CCCCCCHHHCCC-----HHEEEECCCCCCCCC--CEEEE
T ss_conf             0367421056999---99985-747807984545434----974411888582-----124643253027996--06999


Q ss_pred             CHH
Q ss_conf             101
Q gi|254780602|r  253 GAL  255 (400)
Q Consensus       253 ~~~  255 (400)
                      ..+
T Consensus       255 vr~  257 (428)
T KOG1549         255 VRR  257 (428)
T ss_pred             ECC
T ss_conf             746


No 167
>KOG1368 consensus
Probab=99.71  E-value=8.2e-17  Score=122.47  Aligned_cols=312  Identities=18%  Similarity=0.224  Sum_probs=200.4

Q ss_pred             CHHHHHHHHHHH-HCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCC
Q ss_conf             999999999998-38875699877898999999998642101333322332334543333222222233-2232222333
Q gi|254780602|r   46 PENVKYAVVRAM-ERGETKYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFNALMATVN-MGDEVLIPRP  123 (400)
Q Consensus        46 p~~i~~a~~~al-~~~~~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l~~~~~~~~~-~Gd~Vlv~~P  123 (400)
                      -.+++++|.+|. .++.+|+-++.  -.|-+.+|+-..+.-|       +++++|+. +..++++..|. +|.+||+-+-
T Consensus        35 TdeMr~am~eA~vgDdVyGeD~tt--~rLE~~vA~l~GKEAg-------LFv~SGTm-gNllaIm~Hc~~rg~eii~gd~  104 (384)
T KOG1368          35 TDEMRRAMAEASVGDDVYGEDPTT--NRLEQRVAELFGKEAG-------LFVPSGTM-GNLLAIMVHCHQRGSEIIVGDR  104 (384)
T ss_pred             HHHHHHHHHHCCCCCCCCCCCCCH--HHHHHHHHHHHCCCCE-------EEECCCCC-CCHHHHHHHHCCCCCEEEECCC
T ss_conf             599999986453475213678518--8999999998475412-------56326653-1078887874488855784361


Q ss_pred             CC-CCCCC--CCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCC-C-------CCCCEEECCCCCCCC-CCCCCCCCCCCCC
Q ss_conf             32-32222--22222222222222222322210333100012-2-------122012113542100-0012333321112
Q gi|254780602|r  124 YW-VSYPD--MVALCGGIPVFVDTQQDDNFQVSPEKLEQAIT-P-------KTKWLFLNSPSNPSG-VVYSQNRLRALAD  191 (400)
Q Consensus       124 ~y-~~y~~--~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~-~-------~~k~i~l~nP~NPTG-~v~s~~~l~~i~~  191 (400)
                      +- ..|++  +..+.|+.+.++.-  +++-.+|+++|++++. +       -||+|.|-|-||-+| .+++.|++.++.+
T Consensus       105 ~HI~~~E~gg~s~l~gv~~~tv~~--e~dgtm~ledIe~~ir~~~GD~H~p~T~LIclENT~~~~Gg~vlPle~~~~v~~  182 (384)
T KOG1368         105 AHIHRYEQGGISQLAGVHVRTVKN--ENDGTMDLEDIEAAIRVPKGDCHMPPTKLICLENTHNNCGGKVLPLEELDRVKA  182 (384)
T ss_pred             HHEEEHHCCCHHHHCCCEEEEEEE--CCCCEEEHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCEEEEHHHHHHHHH
T ss_conf             032121216721104614675431--799755699998762189997358973179862131356866741999999999


Q ss_pred             CCCCCCCCEEECCCCCCCCCCCCCC--CCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCC-CCCCHHHHHHHHHHHCCCC
Q ss_conf             2333332011101221100000122--332221112333225741465443223445444-2211012268753100122
Q gi|254780602|r  192 VLVRNPHVHIISDDIYEHIVYRNCQ--FSNIVNVEPSLYERTLVVNGVSKAYAMTGLRIG-YAAGALSLIKSMIVLQGQQ  268 (400)
Q Consensus       192 ~~a~~~~i~ii~De~Y~~l~~~~~~--~~s~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG-~~v~~~~li~~l~~~~~~~  268 (400)
                      +| +++++.+-.|-+-   .|+..-  -.|+-.+.. .+| .+.++ +||.++.|   +| .+|+++++|++....+...
T Consensus       183 la-k~~glkLH~DGAR---i~NAavasgV~vk~i~~-~fD-SVsiC-LSKglgAP---VGSViVG~k~FI~kA~~~RKal  252 (384)
T KOG1368         183 LA-KRHGLKLHMDGAR---IFNAAVASGVPVKKICS-AFD-SVSIC-LSKGLGAP---VGSVIVGSKDFIDKARHFRKAL  252 (384)
T ss_pred             HH-HCCCCEEECCHHH---HHHHHHHCCCCHHHHHH-HHH-HHHHH-HHCCCCCC---CCCEEECCHHHHHHHHHHHHHH
T ss_conf             99-6159715336266---65578771998999987-632-42435-53557887---4017875288999989999975


Q ss_pred             CCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEECC-CCEEEEEECCCCCCCCCCCCCCCC
Q ss_conf             2332--2222222222234676432222221100000002455304776033027-408998626410233211332248
Q gi|254780602|r  269 TSGA--CSIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQGVPGIRYMIPD-GAFYLYPSCQDLIGKKSPSGDVIR  345 (400)
Q Consensus       269 ~~~~--~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~~~~~L~~~~g~~~~~p~-g~~y~~~~~~~~~~~~~~~~~~~~  345 (400)
                      ..++  +.....+++-+|++...    ....-.++...+.+.++..+++++..|. -+-++.+.+.          ....
T Consensus       253 GGGmRQsGvLaaaaLval~~~~~----~L~~dHk~A~~lAe~~~~~~~i~v~v~a~etNiv~~~l~----------q~~~  318 (384)
T KOG1368         253 GGGMRQSGVLAAAALVALDENVP----LLRADHKRAKELAEYINTPEEIRVEVPAVETNIVNMVLC----------QARL  318 (384)
T ss_pred             CCCHHHHHHHHHHHHHHHHCCHH----HHHHHHHHHHHHHHHHCCCCCEEEECCHHHCCEEEEECC----------CCCC
T ss_conf             68613777999988987631227----778779999999998646666346322131233211102----------5667


Q ss_pred             CHHHHHHHHHHHCCEEEECCCCCCCCCEEEEEEE--CCHHHHHHHHHHH-HHHHHH
Q ss_conf             9899999999873979983502289972899962--9999999999999-999986
Q gi|254780602|r  346 TDLDFVNGLLEIEKVAVVQGSSFGHGPSIRISYA--VSDAILEEACVRI-KRFCHS  398 (400)
Q Consensus       346 ~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~iRis~~--~~~e~l~~al~rl-~~~l~~  398 (400)
                      +..+++..+ ++.||++.+|..+    -+|+.|-  .++++++..+..+ ++|+..
T Consensus       319 ~~~~l~~~~-~k~gi~lm~~~s~----r~Rivlh~Qvt~~~ve~~~~~~~k~~~~q  369 (384)
T KOG1368         319 TAEELCKFL-EKNGILLMGGASR----RIRIVLHHQVTDEDVEYVKSVLSKKFLKQ  369 (384)
T ss_pred             CHHHHHHHH-HHCCEEEEECCCC----CEEEEEEEECCHHHHHHHHHHHHHHHHHH
T ss_conf             899999889-8778588614666----24899998437899999999999999852


No 168
>cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn). AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT,  Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein 
Probab=99.70  E-value=6.4e-18  Score=129.22  Aligned_cols=190  Identities=22%  Similarity=0.313  Sum_probs=133.1

Q ss_pred             HHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCC
Q ss_conf             99999998388756998778989999999986421013333223323345433332222222-33223222233332322
Q gi|254780602|r   50 KYAVVRAMERGETKYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFNALMAT-VNMGDEVLIPRPYWVSY  128 (400)
Q Consensus        50 ~~a~~~al~~~~~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l~~~~~~~-~~~Gd~Vlv~~P~y~~y  128 (400)
                      .+++.+.++.+....++  =..++.+.+++|+...+        .+.++.++.||.+++.++ +.+||+|++|.-+|+.-
T Consensus         2 ~~~v~~~l~s~~~~~G~--~v~~fE~~~~~~~g~k~--------~v~~~sgt~Al~lal~~l~~~~gdeVi~p~~t~~at   71 (352)
T cd00616           2 LEAVEEVLDSGWLTLGP--KVREFEKAFAEYLGVKY--------AVAVSSGTAALHLALRALGIGPGDEVIVPSFTFVAT   71 (352)
T ss_pred             HHHHHHHHHCCCCCCCH--HHHHHHHHHHHHHCCCE--------EEEECCHHHHHHHHHHHCCCCCCCEEEECCCCCHHH
T ss_conf             78999998369977987--69999999999978593--------999768899999999986978839999899763989


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCC
Q ss_conf             22222222222222222223222103331000122122012113542100001233332111223333320111012211
Q gi|254780602|r  129 PDMVALCGGIPVFVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYE  208 (400)
Q Consensus       129 ~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~  208 (400)
                      ...+..+|++|+.++++++ .|.+|+++++++++++||+|++++.   -|..   .++++|.++| +++++.||+|.+++
T Consensus        72 ~~ai~~~G~~pv~~Di~~~-t~~id~~~l~~~i~~~tkaIi~vh~---~G~~---~d~~~i~~~~-~~~~i~lIeDaA~a  143 (352)
T cd00616          72 ANAILLLGATPVFVDIDPD-TYNIDPELIEAAITPRTKAIIPVHL---YGNP---ADMDAIMAIA-KRHGLPVIEDAAQA  143 (352)
T ss_pred             HHHHHHCCCEEEEEECCCC-CCCCCHHHHHHHCCCCCCEEEEECC---CCCC---CCHHHHHHHH-HHCCCEEEEHHHHH
T ss_conf             9999985998998407778-5775889999762868709999689---8986---6889999999-97798998022002


Q ss_pred             CCC-CCCCCCCCCCCCCCCCCCEEEEECCC--CCCCCCCCCCCCCCCC-HHHHHHHHHHHCCCC
Q ss_conf             000-00122332221112333225741465--4432234454442211-012268753100122
Q gi|254780602|r  209 HIV-YRNCQFSNIVNVEPSLYERTLVVNGV--SKAYAMTGLRIGYAAG-ALSLIKSMIVLQGQQ  268 (400)
Q Consensus       209 ~l~-~~~~~~~s~~~~~~~~~~~~i~~~S~--SK~~~~~G~RiG~~v~-~~~li~~l~~~~~~~  268 (400)
                      .-. |++..   +.+..    |  +.+.||  +|.++ +| --|.++. ++++.+.+..++.+.
T Consensus       144 ~Gs~~~~~~---~G~~g----d--~~~fSF~~~K~it-~g-eGG~i~tn~~~~~~~~~~lr~~G  196 (352)
T cd00616         144 LGATYKGRK---VGTFG----D--AGAFSFHPTKNLT-TG-EGGAVVTNDEELAERARLLRNHG  196 (352)
T ss_pred             CCCCCCCEE---CCCCC----C--CCCCCCCCCCCCC-CC-CCEEEEECCHHHHHHHHHHHHCC
T ss_conf             168346712---56643----4--2534478775676-77-73499969999999999999659


No 169
>PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=99.70  E-value=2.6e-16  Score=119.42  Aligned_cols=163  Identities=20%  Similarity=0.238  Sum_probs=109.4

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----CCCCCCCC
Q ss_conf             99877898999999998642101333322332334543333222222233223222233332322222----22222222
Q gi|254780602|r   64 YTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDM----VALCGGIP  139 (400)
Q Consensus        64 Y~~~~G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l~~~~~~~~~~Gd~Vlv~~P~y~~y~~~----~~~~g~~~  139 (400)
                      |+- .|.|- ++++.+.+...-|    .+.-++++.+..||..++.+++++||+|++....|..-...    +...|.++
T Consensus        52 YsR-~gnPT-~~~LE~~la~LEg----~~~a~~~~SGMaAIs~~ll~ll~~Gd~iv~~~~~Yggt~~l~~~~l~~~gi~~  125 (424)
T PRK06084         52 YTR-IMNPT-NDVLEQRVAALEG----GVGALAVASGMAAITYAIQTVAEAGDNIVSVAKLYGGTYNLLAHTLPRIGIQT  125 (424)
T ss_pred             ECC-CCCHH-HHHHHHHHHHHHC----CCCEEEECCHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHCCCEE
T ss_conf             119-98867-9999999999859----98489954789999999998418999899827985638999999887468615


Q ss_pred             CCCCCCCCCCCCCHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCC
Q ss_conf             22222222322210333100012212201211354210000123333211122333332011101221100000122332
Q gi|254780602|r  140 VFVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSN  219 (400)
Q Consensus       140 ~~v~~~~~~~~~~d~~~l~~~i~~~~k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s  219 (400)
                      .+++.       -|.++++++++++||+||+=+|.|||..+.+   +++|+++| +++++++++|..+.--.+    +.+
T Consensus       126 ~fvd~-------~d~~~~~~~i~~~Tklv~~EsP~NPtl~v~D---I~~i~~iA-~~~g~~~vVDNT~atP~~----~~P  190 (424)
T PRK06084        126 RFAAH-------DDIAALEALIDERTKAVFCESIGNPAGNIVD---LQALADAA-HRHGVPLIVDNTVATPVL----CRP  190 (424)
T ss_pred             EEECC-------CCHHHHHHHCCCCCEEEEEECCCCCCCEECC---HHHHHHHH-HHCCCEEEEECCCCCCCC----CCH
T ss_conf             99588-------6779999754876518998438999865037---89999999-874995995457635232----680


Q ss_pred             CCCCCCCCCCEEEEECCCCCCCCCCCCCC-CCCCC
Q ss_conf             22111233322574146544322344544-42211
Q gi|254780602|r  220 IVNVEPSLYERTLVVNGVSKAYAMTGLRI-GYAAG  253 (400)
Q Consensus       220 ~~~~~~~~~~~~i~~~S~SK~~~~~G~Ri-G~~v~  253 (400)
                       +.+  +   --|++.|.||.++--|=-+ |.+++
T Consensus       191 -l~~--G---aDivvhS~TKYi~GHsDvl~G~vi~  219 (424)
T PRK06084        191 -FEH--G---ADIVVHSLTKYMGGHGTSIGGIVVD  219 (424)
T ss_pred             -HHH--C---CCEEEEECCEECCCCCCEEEEEEEC
T ss_conf             -452--8---9889996652205887603678971


No 170
>PRK08776 cystathionine gamma-synthase; Provisional
Probab=99.70  E-value=8.5e-17  Score=122.36  Aligned_cols=223  Identities=15%  Similarity=0.181  Sum_probs=138.2

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----CCCCCCCCC
Q ss_conf             6998778989999999986421013333223323345433332222222332232222333323222----222222222
Q gi|254780602|r   63 KYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYP----DMVALCGGI  138 (400)
Q Consensus        63 ~Y~~~~G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l~~~~~~~~~~Gd~Vlv~~P~y~~y~----~~~~~~g~~  138 (400)
                      .|+- .|.| .++++.+.+...-|    .+.-++++.+..|+..++.+++++||+|++.+..|..-.    ......|.+
T Consensus        53 ~YsR-~gNP-T~~~lE~~lA~LEg----g~~a~~~sSGmaAi~~~l~~ll~~GDhiv~~~~~YGgT~~l~~~~~~~~gi~  126 (405)
T PRK08776         53 DYTR-SGNP-TRDLLGEALAELEG----GAGGVITSTGMGAINLVLNALLQPGDTLVVPHDAYGGSWRLFNALAKKGHFA  126 (405)
T ss_pred             EECC-CCCH-HHHHHHHHHHHHHC----CCCEEEECCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHCCEE
T ss_conf             3418-9887-89999999999829----9968994679999999999973899989986886117999999987548889


Q ss_pred             CCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC
Q ss_conf             22222222232221033310001221220121135421000012333321112233333201110122110000012233
Q gi|254780602|r  139 PVFVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFS  218 (400)
Q Consensus       139 ~~~v~~~~~~~~~~d~~~l~~~i~~~~k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~  218 (400)
                      +.+++.       -|++.++++++++||+||+-+|.|||-.+.+   +++|+++| +++++++++|..+..-.+    ..
T Consensus       127 ~~~vd~-------~d~~~~~~~i~~~Tklv~~EtpsNP~l~v~D---i~~ia~iA-~~~g~~~vVDNTfatP~~----~~  191 (405)
T PRK08776        127 LITADL-------TDPRSLADALAQSPKLVLIETPSNPLLRITD---LRFVIEAA-HKVGALTVVDNTFLSPAL----QK  191 (405)
T ss_pred             EEEECC-------CCHHHHHHHCCCCCEEEEEECCCCCCCEEEC---CHHHHHHH-HHCCCEEEEECCCCCCCC----CC
T ss_conf             999689-------9989999743777659999889999886027---59999999-873997999799764002----68


Q ss_pred             CCCCCCCCCCCEEEEECCCCCCCCCCCC-CCCCCCCH-HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             2221112333225741465443223445-44422110-122687531001222332222222222223467643222222
Q gi|254780602|r  219 NIVNVEPSLYERTLVVNGVSKAYAMTGL-RIGYAAGA-LSLIKSMIVLQGQQTSGACSIAQWAAVEALNGPQDFVVNNRK  296 (400)
Q Consensus       219 s~~~~~~~~~~~~i~~~S~SK~~~~~G~-RiG~~v~~-~~li~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~  296 (400)
                      ++ .+     .--|++.|.||.++--|= =.|.+++. +++.+++...+.....+++....+.+...|+.    +.-..+
T Consensus       192 Pl-~~-----GaDivihS~TKyl~GHsDvl~G~vv~~~~~~~~~l~~~~~~~G~~~sP~da~L~lRGLkT----L~lRm~  261 (405)
T PRK08776        192 PL-EF-----GADLVLHSTTKYINGHSDVVGGAVVARDAALHQQLVWWANALGLTGSPFDAFLTLRGLRT----LDARLR  261 (405)
T ss_pred             HH-HH-----CCCEEEEECCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCC----HHHHHH
T ss_conf             26-52-----797899972604327865305622268889999999999860888883357888645788----999999


Q ss_pred             CCCCCCCCHHHHHHCCCCCE
Q ss_conf             11000000024553047760
Q gi|254780602|r  297 IFEYRRDLCVAQLQGVPGIR  316 (400)
Q Consensus       297 ~~~~~r~~~~~~L~~~~g~~  316 (400)
                      +-.++...+.+.|++.|.++
T Consensus       262 r~~~nA~~lA~~L~~hp~V~  281 (405)
T PRK08776        262 VHQENADAIAALLDGHAAVN  281 (405)
T ss_pred             HHHHHHHHHHHHHHHCCCCC
T ss_conf             99999999999997098968


No 171
>TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein; InterPro: IPR011340   This entry describes probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. The most closely related characterised proteins are active as cysteine desulphurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown..
Probab=99.69  E-value=5.9e-17  Score=123.31  Aligned_cols=330  Identities=19%  Similarity=0.245  Sum_probs=215.6

Q ss_pred             CCCCEEECCCCCC-CCCCCHHHHHHHHHHHHCCC---CCCCCCCC------CHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf             6997266565897-49889999999999983887---56998778------98999999998642101333322332334
Q gi|254780602|r   29 KGIDVLCLTAGEP-DFDMPENVKYAVVRAMERGE---TKYTAVAG------ISPLREAIVEKFRRDNDLHYTSDQIIVGT   98 (400)
Q Consensus        29 ~g~~ii~l~~G~p-~~~~p~~i~~a~~~al~~~~---~~Y~~~~G------~~~lR~aia~~~~~~~g~~~~~e~I~it~   98 (400)
                      +|++.|.|--  | .-.+|..+.+|+.++|....   .++..+.|      ..+.|+++|..++.     -+||.|+++.
T Consensus        18 ~~~~~~~~Dn--pAG~q~Pq~V~dAv~~~L~~~~A~~gg~~~~~G~~~~~~vd~AR~a~A~LlnA-----~~Pe~vv~G~   90 (410)
T TIGR01976        18 KDKDVVFFDN--PAGTQIPQSVLDAVSAALTRSNANRGGAYESSGRKADQVVDDAREAVADLLNA-----ESPEEVVFGA   90 (410)
T ss_pred             CCCCEEEEEC--CCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC-----CCCCCEEECC
T ss_conf             8973689757--88887773479999999874130137677663068999999999999997267-----9888567678


Q ss_pred             CCCCCCCCCCCCC---CCCCCCCCCCCCC-CC---CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEEC
Q ss_conf             5433332222222---3322322223333-23---222222222222222222222322210333100012212201211
Q gi|254780602|r   99 GAKHVIFNALMAT---VNMGDEVLIPRPY-WV---SYPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQAITPKTKWLFLN  171 (400)
Q Consensus        99 G~~~~l~~~~~~~---~~~Gd~Vlv~~P~-y~---~y~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~k~i~l~  171 (400)
                      ..+..++.+..++   ..+||||||..=- +.   +|.+.++..|+++...+.+++. +.++.++|+.+|++|||++-++
T Consensus        91 ~~T~L~~~ls~a~~~~~~~GDEvivt~LDHeaNispW~~~a~~~Ga~Vkw~~~d~~~-~~L~~~~L~~Lls~rTRLVAvt  169 (410)
T TIGR01976        91 NATSLAYLLSRALSRRWGPGDEVIVTRLDHEANISPWLQAAEDAGAKVKWARVDEAD-GELHPDDLASLLSPRTRLVAVT  169 (410)
T ss_pred             CHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHCCCEEEEEECCCCC-CCCCHHHHHCCCCCCHHHHHHH
T ss_conf             668999999999851268985589716766001368999998389789996336231-5448699823668822555623


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCC
Q ss_conf             35421000012333321112233333201110122110000012233222111233322574146544322344544422
Q gi|254780602|r  172 SPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTGLRIGYA  251 (400)
Q Consensus       172 nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~  251 (400)
                      .-+|=||++-   ++++|.++ ++..|.++.+|-++    |-....+.+...     +.-+.++|.=|.|| |  .+|.+
T Consensus       170 ~ASn~~Gs~~---dl~A~~~~-vh~aGA~v~VDaVh----yaPH~L~Dvqa~-----gaD~l~cSaYK~fG-P--H~G~l  233 (410)
T TIGR01976       170 AASNLLGSIV---DLAALTEL-VHAAGALVYVDAVH----YAPHGLIDVQAL-----GADFLVCSAYKFFG-P--HLGIL  233 (410)
T ss_pred             HHHCCCCCHH---HHHHHHHH-HHHCCCEEEECHHH----HCCCCCCCHHHH-----CCCEEEECCEECCC-C--CEEEE
T ss_conf             4402325511---58899999-98759879881110----045666413422-----78879985631168-8--50178


Q ss_pred             CCHHHHHHHHHHHCCCCC---------CCCCCCCC----CCCCCCCCCCC-----C----CC-------CCCCCCCCCCC
Q ss_conf             110122687531001222---------33222222----22222234676-----4----32-------22222110000
Q gi|254780602|r  252 AGALSLIKSMIVLQGQQT---------SGACSIAQ----WAAVEALNGPQ-----D----FV-------VNNRKIFEYRR  302 (400)
Q Consensus       252 v~~~~li~~l~~~~~~~~---------~~~~~~~q----~a~~~~l~~~~-----~----~~-------~~~~~~~~~~r  302 (400)
                      .+-.++++.+.-.+....         .|...+--    .|++.+|....     +    -.       +...++-+.-+
T Consensus       234 ~~R~~~~~~l~~~k~~~~~d~~P~r~E~GT~~yEllAG~~AavdYLa~lg~nlA~~~~gsrR~~lv~sf~~~~ayE~~l~  313 (410)
T TIGR01976       234 WGRPELLKSLPPYKLEFSEDTGPERFELGTLQYELLAGVVAAVDYLAGLGRNLAASANGSRRERLVASFEAIEAYENRLA  313 (410)
T ss_pred             EECHHHHCCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             71146640468763367788888514514556026789999999999823210689886558999999999999999999


Q ss_pred             CCHHHHHHCCCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCC-----------CC
Q ss_conf             0002455304776033027408998626410233211332248989999999987397998350228-----------99
Q gi|254780602|r  303 DLCVAQLQGVPGIRYMIPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFG-----------HG  371 (400)
Q Consensus       303 ~~~~~~L~~~~g~~~~~p~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg-----------~~  371 (400)
                      +.|.+.|+++|+++++-++-.-=+=-.+|.+     .+........+.+++|. +.+|.+..|+.|.           ..
T Consensus       314 ~~Ll~~L~~~P~~t~yG~~d~~R~~~RvPTv-----~F~v~~~~P~~~~~~La-~~~v~~~~GHfYA~~~~~~LGl~~~~  387 (410)
T TIGR01976       314 ERLLAGLSDLPGVTVYGVQDEKRLAERVPTV-----AFTVAGLSPQRVVRRLA-DQGVDVWAGHFYAVRLLRRLGLEADG  387 (410)
T ss_pred             HHHHHHHHHCCCEEEECHHHHHHHHHCCCEE-----EEEECCCCHHHHHHHHH-HCCCEEECCCCHHHHHHHHCCCCCCC
T ss_conf             9999998748956997355786464259758-----89727878799999985-36863312641168999865898988


Q ss_pred             CEEEEEEE--CCHHHHHHH
Q ss_conf             72899962--999999999
Q gi|254780602|r  372 PSIRISYA--VSDAILEEA  388 (400)
Q Consensus       372 ~~iRis~~--~~~e~l~~a  388 (400)
                      |-||++++  .+.|++.+-
T Consensus       388 GvvR~gLaHY~t~eevd~l  406 (410)
T TIGR01976       388 GVVRVGLAHYNTAEEVDRL  406 (410)
T ss_pred             CEEEEEECCCCCHHHHHHH
T ss_conf             7389852577988999999


No 172
>KOG1411 consensus
Probab=99.69  E-value=2.9e-17  Score=125.21  Aligned_cols=340  Identities=14%  Similarity=0.156  Sum_probs=209.5

Q ss_pred             CCCCHHHHHHHHHHHHHHC-CCCEEECCCCCC--CC--C-CCHHHHHHHHHHHHCCC-CCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             8975899999999999986-997266565897--49--8-89999999999983887-5699877898999999998642
Q gi|254780602|r   11 VQPSATLVAAQRVRDLRSK-GIDVLCLTAGEP--DF--D-MPENVKYAVVRAMERGE-TKYTAVAGISPLREAIVEKFRR   83 (400)
Q Consensus        11 l~~s~~~~~~~~~~~~~~~-g~~ii~l~~G~p--~~--~-~p~~i~~a~~~al~~~~-~~Y~~~~G~~~lR~aia~~~~~   83 (400)
                      -.|-|++.+.+..+   +. +..=|||++|-=  |-  | .-+.|++|-++.+.... ..|.|..|++|..+..++..-.
T Consensus        34 aPpDpILGVTeAfk---~D~n~~KiNLgvGaYRdd~gKp~vL~~VrkAE~ql~~~~ldKEYlpI~Gl~eF~k~sakLa~G  110 (427)
T KOG1411          34 APPDPILGVTEAFK---KDPNPKKINLGVGAYRDDNGKPYVLPSVRKAEQQLASLSLDKEYLPITGLAEFNKLSAKLALG  110 (427)
T ss_pred             CCCCCCCCHHHHHH---CCCCCCEEEECCCCEECCCCCEEEEHHHHHHHHHHHHHCCCCHHCCCCCHHHHHHHHHHHHHC
T ss_conf             99987222789875---489843342011100148898454178889999875311350120245618888887887615


Q ss_pred             HCCCCCCCCCCCCC--CCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHC
Q ss_conf             10133332233233--4543333--2222222332232222333323222222222222222222222322210333100
Q gi|254780602|r   84 DNDLHYTSDQIIVG--TGAKHVI--FNALMATVNMGDEVLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQ  159 (400)
Q Consensus        84 ~~g~~~~~e~I~it--~G~~~~l--~~~~~~~~~~Gd~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~  159 (400)
                      ..--.+...+|+.+  -.++.+|  ...|.+...|+..|.+|+|+|.++..+...+|....++.-.....-.+|++.+-+
T Consensus       111 ~~s~~ik~~Ri~tvQ~lSGTGaLriga~Fl~~f~~~~~I~ip~PTWgNh~~if~~ag~~~~~yrYyd~~t~gld~~g~le  190 (427)
T KOG1411         111 DNSPVIKEKRIVTVQTLSGTGALRVGAEFLARFYPSRDIYIPDPTWGNHKNIFKDAGLPVKFYRYYDPKTRGLDFKGMLE  190 (427)
T ss_pred             CCCHHHHCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHHH
T ss_conf             88544420532688740575326677899986266661561587534567630025861256663054100135677899


Q ss_pred             CCCCCC-CCEEECC--CCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCC--CCCCCCCCCCCCCCEEEEE
Q ss_conf             012212-2012113--5421000012333321112233333201110122110000012--2332221112333225741
Q gi|254780602|r  160 AITPKT-KWLFLNS--PSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNC--QFSNIVNVEPSLYERTLVV  234 (400)
Q Consensus       160 ~i~~~~-k~i~l~n--P~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~--~~~s~~~~~~~~~~~~i~~  234 (400)
                      .+.+.+ ..++|++  -|||||.--+.|.+++|.+.. ++.+.+-+.|-+|..|.-++.  ...++--+. +...+++..
T Consensus       191 dl~~~p~gs~ilLhaCaHNPTGvDPt~eqw~ki~~~~-~~k~~~pffDmAYQGfaSG~~d~DA~avR~F~-~~g~~~~la  268 (427)
T KOG1411         191 DLGEAPEGSIILLHACAHNPTGVDPTKEQWEKISDLI-KEKNLLPFFDMAYQGFASGDLDKDAQAVRLFV-EDGHEILLA  268 (427)
T ss_pred             HHHCCCCCCEEEEEHHHCCCCCCCCCHHHHHHHHHHH-HHCCCCCHHHHHHCCCCCCCCHHHHHHHHHHH-HCCCCEEEE
T ss_conf             8741788848985221038878896088899999876-54035614665540423587024578999998-707756765


Q ss_pred             CCCCCCCCCCCCCCCCCC---CHHHHH----HHHHHHCCCCCCCCCCCCCCCCCCCCCCC---CCCCC---CCCCCCCCC
Q ss_conf             465443223445444221---101226----87531001222332222222222223467---64322---222211000
Q gi|254780602|r  235 NGVSKAYAMTGLRIGYAA---GALSLI----KSMIVLQGQQTSGACSIAQWAAVEALNGP---QDFVV---NNRKIFEYR  301 (400)
Q Consensus       235 ~S~SK~~~~~G~RiG~~v---~~~~li----~~l~~~~~~~~~~~~~~~q~a~~~~l~~~---~~~~~---~~~~~~~~~  301 (400)
                      .||.|..|+.|-|+|.+-   .+++..    .++..+..-+.+++|.....++...|.++   ..|+.   -+.+++...
T Consensus       269 QSyAKNMGLYgERvGa~svvc~~ad~A~rV~SQlk~liRpmYSnPP~hGArIv~~Il~d~~l~~~W~~evk~MadRi~~m  348 (427)
T KOG1411         269 QSYAKNMGLYGERVGALSVVCKDADEAKRVESQLKILIRPMYSNPPLHGARIVATILSDPDLKNQWLGEVKGMADRIISM  348 (427)
T ss_pred             HHHHHHCCHHHHCCCEEEEEECCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf             55655232033203505787267888887887788886011358986511455540477677778888899987766556


Q ss_pred             CCCHHHHHHCC--CC-CEEEECCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCCCCEEEEEE
Q ss_conf             00002455304--77-6033027408998626410233211332248989999999987397998350228997289996
Q gi|254780602|r  302 RDLCVAQLQGV--PG-IRYMIPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGHGPSIRISY  378 (400)
Q Consensus       302 r~~~~~~L~~~--~g-~~~~~p~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~iRis~  378 (400)
                      |+.+.+.|+..  ++ ++.+.-|=|||+|--+.                .+-++.|.+++.|..+-      +  =|||.
T Consensus       349 R~~L~d~L~~~gs~~~W~hI~~QIGMF~fTgl~----------------peQv~~l~ke~~iYmT~------d--GRiS~  404 (427)
T KOG1411         349 RQQLFDALEKEGSPGNWSHITKQIGMFCFTGLN----------------PEQVDWLTKEYHIYLTK------D--GRISM  404 (427)
T ss_pred             HHHHHHHHHCCCCCCCHHHHHHHHHEEEECCCC----------------HHHHHHHHHHHEEEECC------C--CEEEE
T ss_conf             888767763579876679999762003324789----------------99999987652366525------8--63762


Q ss_pred             E
Q ss_conf             2
Q gi|254780602|r  379 A  379 (400)
Q Consensus       379 ~  379 (400)
                      +
T Consensus       405 a  405 (427)
T KOG1411         405 A  405 (427)
T ss_pred             C
T ss_conf             3


No 173
>PRK05939 hypothetical protein; Provisional
Probab=99.69  E-value=2e-16  Score=120.09  Aligned_cols=180  Identities=18%  Similarity=0.254  Sum_probs=116.0

Q ss_pred             CCCCHHHHHHHHHHHHCCCCCCCCCC-CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             98899999999999838875699877-89899999999864210133332233233454333322222223322322223
Q gi|254780602|r   43 FDMPENVKYAVVRAMERGETKYTAVA-GISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFNALMATVNMGDEVLIP  121 (400)
Q Consensus        43 ~~~p~~i~~a~~~al~~~~~~Y~~~~-G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l~~~~~~~~~~Gd~Vlv~  121 (400)
                      |+.+++..+    +......+|.-++ |.| .++++.+.+....|    .+.-++++.+..||..++.+++++||+|++.
T Consensus        21 f~~~~~~~~----~~~~~~~~~~YsR~~nP-T~~~le~~la~LEg----g~~a~~~sSGMaAi~~~l~~ll~~Gd~il~~   91 (396)
T PRK05939         21 FEDARDLID----VFQGKKAGFTYARQGTP-TTAALEAKITEMEG----GVGTVCFATGMAAIAAVFLTLLRAGDHLVSS   91 (396)
T ss_pred             ECCHHHHHH----HHCCCCCCCEEECCCCH-HHHHHHHHHHHHHC----CCEEEEECCHHHHHHHHHHHHCCCCCEEEEC
T ss_conf             499899999----85588589634089986-79999999999829----9749996579999999999835889889953


Q ss_pred             CCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             33323222222---222222222222222322210333100012212201211354210000123333211122333332
Q gi|254780602|r  122 RPYWVSYPDMV---ALCGGIPVFVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPH  198 (400)
Q Consensus       122 ~P~y~~y~~~~---~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~  198 (400)
                      ...|..-..++   ...|.++.+++.       -|+++++++++++||+||+-+|.|||..+.+   +++|+++| ++++
T Consensus        92 ~~~YG~t~~l~~~l~~~GI~v~~vd~-------~d~~~~~~ai~~~Tklv~~EspsNP~l~v~D---i~~i~~ia-~~~g  160 (396)
T PRK05939         92 QYLFGNTNSLLGTLQGLGVEVTMVDA-------TDVQQVAAAIRPNTRMVFVETIANPGTQVAD---LAGIGALC-RERG  160 (396)
T ss_pred             CCCCCHHHHHHHHHHHCCEEEEEECC-------CCHHHHHHHHCCCCCEEEEEECCCCCCCCCC---HHHHHHHH-HHCC
T ss_conf             88692299999986531869999889-------7989999861856618999808999870758---99999999-9839


Q ss_pred             CEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCC-CCC
Q ss_conf             011101221100000122332221112333225741465443223445444-221
Q gi|254780602|r  199 VHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTGLRIG-YAA  252 (400)
Q Consensus       199 i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG-~~v  252 (400)
                      +.+++|..+.--.+    ..++ .+  +   --|++.|.||..+--|--+| .++
T Consensus       161 ~~~vVDNT~atP~~----~~Pl-~~--G---aDivvhS~TKyi~GhsD~l~G~vv  205 (396)
T PRK05939        161 LVYVVDNTMTSPWL----FRPK-SV--G---ASLVINSLSKYIAGHGNALGGAVT  205 (396)
T ss_pred             CEEEEECCCCHHHH----CCHH-HH--C---CCEEEEECCCCCCCCCCEEEEEEE
T ss_conf             97999777630420----5855-63--8---988998343302588774769996


No 174
>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=99.69  E-value=3e-16  Score=119.05  Aligned_cols=174  Identities=14%  Similarity=0.190  Sum_probs=113.4

Q ss_pred             HHHHHHCCCCCCCCCC-CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             9999838875699877-898999999998642101333322332334543333222222233223222233332322222
Q gi|254780602|r   53 VVRAMERGETKYTAVA-GISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDM  131 (400)
Q Consensus        53 ~~~al~~~~~~Y~~~~-G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l~~~~~~~~~~Gd~Vlv~~P~y~~y~~~  131 (400)
                      ..+..+....+|.-++ |.| .++++.+.+...-|    .+.-++++.+..||..++.+++++||+|++++..|..-...
T Consensus        45 ~~~~~~~~~~g~~YsR~gNP-T~~~LE~~la~LEg----g~~a~~~sSGmaAis~~l~~ll~~Gd~iv~~~~~YggT~~l  119 (433)
T PRK08134         45 AAALFNLERAGHVYSRISNP-TTAVLEERVAALEG----GVGAIATASGQAALHLAIATLMGAGSHIVASSALYGGSHNL  119 (433)
T ss_pred             HHHHHCCCCCCCEECCCCCH-HHHHHHHHHHHHCC----CCCEEEECCHHHHHHHHHHHHCCCCCEEEECCCEECCHHHH
T ss_conf             98763576679601499886-69999999999809----98279853889999999997489999899718807737999


Q ss_pred             ----CCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCC
Q ss_conf             ----2222222222222222322210333100012212201211354210000123333211122333332011101221
Q gi|254780602|r  132 ----VALCGGIPVFVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIY  207 (400)
Q Consensus       132 ----~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y  207 (400)
                          +...|.++.+++.       -|+++++++++++||+||+-+|.|||-.+.+   +++|+++ ++++++.+++|..+
T Consensus       120 ~~~~l~~~Gi~~~~vd~-------~d~~~~~~~i~~~Tklv~~EspsNP~l~v~D---i~aia~i-A~~~g~~~vVDNT~  188 (433)
T PRK08134        120 LHYTLPRFGIETTFVKP-------RDIDGWRAAIRPNTRLLFGETLGNPGLEVLD---IPTVAAI-AHEAGVPLLVDSTF  188 (433)
T ss_pred             HHHHHHHCCEEEEEECC-------CCHHHHHHHCCCCCEEEEEECCCCCCCCCCC---HHHHHHH-HHHCCCEEEEECCC
T ss_conf             99877634837999889-------7846788755987528998538999750358---9999999-97567619971665


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCC-CCCC
Q ss_conf             10000012233222111233322574146544322344544-4221
Q gi|254780602|r  208 EHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTGLRI-GYAA  252 (400)
Q Consensus       208 ~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~~~G~Ri-G~~v  252 (400)
                      .--.+    +.++ .+  +   --|++.|.||.++--|-=+ |.++
T Consensus       189 atP~~----~~Pl-~~--G---aDivvhS~TKYl~GHsDvlgG~vv  224 (433)
T PRK08134        189 TTPYL----LRPF-EH--G---ADLVYHSATKFLGGHGTAIGGVLV  224 (433)
T ss_pred             CHHHH----CCHH-HH--C---CCEEEEECCEEECCCCCEEEEEEE
T ss_conf             11530----5805-52--8---988999654672588754778985


No 175
>PRK08114 cystathionine beta-lyase; Provisional
Probab=99.69  E-value=1.9e-16  Score=120.20  Aligned_cols=223  Identities=16%  Similarity=0.161  Sum_probs=141.8

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----CCCCCCC
Q ss_conf             699877898999999998642101333322332334543333222222233223222233332322222----2222222
Q gi|254780602|r   63 KYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDM----VALCGGI  138 (400)
Q Consensus        63 ~Y~~~~G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l~~~~~~~~~~Gd~Vlv~~P~y~~y~~~----~~~~g~~  138 (400)
                      -|+- .|.|- ++++.+.+....|    .+.-++++.+..|+..++.+++.+||+|+++...|..-...    +...|.+
T Consensus        55 ~YsR-~~NPT-~~~lE~~la~LEg----~~~a~~fsSGmaAis~~ll~ll~~Gd~il~~~~~YggT~~l~~~~l~~~Gi~  128 (395)
T PRK08114         55 FYGR-RGTLT-HFSLQEAMCELEG----GAGCALYPCGAAAVANSILAFVEQGDHVLMTGTAYEPSQDFCSKILSKLGVT  128 (395)
T ss_pred             EEEC-CCCHH-HHHHHHHHHHHHC----CCCEEEECCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHCCCE
T ss_conf             7778-98876-9999999999709----9737982688999999999970899989976888568999999999875956


Q ss_pred             CCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC--CEEECCCCCCCCCCCCCC
Q ss_conf             222222222322210333100012212201211354210000123333211122333332--011101221100000122
Q gi|254780602|r  139 PVFVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPH--VHIISDDIYEHIVYRNCQ  216 (400)
Q Consensus       139 ~~~v~~~~~~~~~~d~~~l~~~i~~~~k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~--i~ii~De~Y~~l~~~~~~  216 (400)
                      +.+++.       -|.++++++++++||+||+-+|.|||-.+.+   +++|++++ ++++  +.+++|..+.--.+    
T Consensus       129 v~~~d~-------~d~~~~~~~i~~~Tklv~~EspsNP~l~v~D---i~~i~~~a-~~~~~~~~~vvDNTfatP~~----  193 (395)
T PRK08114        129 TTWFDP-------LIGADIAKLIQPNTKVVFLESPGSITMEVHD---IPAIVAAV-RSVAPDAVIMIDNTWAAGVL----  193 (395)
T ss_pred             EEEECC-------CCHHHHHHHCCCCCEEEEEECCCCCCCCCCC---HHHHHHHH-HHCCCCCEEEECCCCCCCCC----
T ss_conf             998579-------9999999746877549999448986652267---99999999-86056868997188788765----


Q ss_pred             CCCCCCCCCCCCCEEEEECCCCCCCCCCC-CCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             33222111233322574146544322344-54442211012268753100122233222222222222346764322222
Q gi|254780602|r  217 FSNIVNVEPSLYERTLVVNGVSKAYAMTG-LRIGYAAGALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGPQDFVVNNR  295 (400)
Q Consensus       217 ~~s~~~~~~~~~~~~i~~~S~SK~~~~~G-~RiG~~v~~~~li~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~  295 (400)
                      +.++ .+     .--|++.|.||.++--| .=.|.+++++++.+++...+.....++++...+.+...|+.    +.-..
T Consensus       194 ~~Pl-~~-----GaDivihS~TKyl~GHsDv~~G~v~~~~~~~~~l~~~~~~~G~~~~p~~a~Ll~RGL~T----L~lRm  263 (395)
T PRK08114        194 FKAL-DF-----GIDISIQAGTKYLIGHSDAMIGTAVANARCWEQLRENSYLMGQMVDADTAYMTSRGLRT----LGVRL  263 (395)
T ss_pred             CCCC-CC-----CCEEEEEECCCEECCCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCC----HHHHH
T ss_conf             5444-66-----67499996665005778852478852788999999999973787997999999756763----88999


Q ss_pred             CCCCCCCCCHHHHHHCCCCCE
Q ss_conf             211000000024553047760
Q gi|254780602|r  296 KIFEYRRDLCVAQLQGVPGIR  316 (400)
Q Consensus       296 ~~~~~~r~~~~~~L~~~~g~~  316 (400)
                      ++-.++...+.+.|++.|.++
T Consensus       264 ~~~~~nA~~vA~~L~~hp~V~  284 (395)
T PRK08114        264 KQHQESSLKVAEWLAEHPEVA  284 (395)
T ss_pred             HHHHHHHHHHHHHHHCCCCCC
T ss_conf             999999999999996399975


No 176
>COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism]
Probab=99.68  E-value=1.5e-16  Score=120.95  Aligned_cols=313  Identities=16%  Similarity=0.156  Sum_probs=187.5

Q ss_pred             CCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             88999999999998388756998778989999999986421013333223323345433332222222332232222333
Q gi|254780602|r   44 DMPENVKYAVVRAMERGETKYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFNALMATVNMGDEVLIPRP  123 (400)
Q Consensus        44 ~~p~~i~~a~~~al~~~~~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l~~~~~~~~~~Gd~Vlv~~P  123 (400)
                      .+.|.++|+|.++-..    ..+.-|..++-+++.++.++.+|.    +.++++++++++..+++.+.|.||+.||+..-
T Consensus        11 g~~~~m~eam~~a~~~----~~~~YG~D~~~~~~e~~~ae~~g~----~a~~Fv~sGT~aN~lal~~~~~~~~~vi~~~~   82 (342)
T COG2008          11 GPTPEMREALAAANAV----GDDVYGEDPTTNALEQRIAELFGK----EAALFVPSGTQANQLALAAHCQPGESVICHET   82 (342)
T ss_pred             CCCHHHHHHHHHCCCC----CCCCCCCCHHHHHHHHHHHHHHCC----CEEEEECCCCHHHHHHHHHHCCCCCEEEEECC
T ss_conf             8799999999855245----787778888999999999998577----44999268438889999986489976998525


Q ss_pred             CCC-CCCC-CCCCC-CCCCCCCCCCCCCCCCCHHHHHHCCCCC------CCCCEEECCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             323-2222-22222-2222222222223222103331000122------1220121135421000012333321112233
Q gi|254780602|r  124 YWV-SYPD-MVALC-GGIPVFVDTQQDDNFQVSPEKLEQAITP------KTKWLFLNSPSNPSGVVYSQNRLRALADVLV  194 (400)
Q Consensus       124 ~y~-~y~~-~~~~~-g~~~~~v~~~~~~~~~~d~~~l~~~i~~------~~k~i~l~nP~NPTG~v~s~~~l~~i~~~~a  194 (400)
                      .-. .|+. .+..+ ++.++  +..+..+-.+++|++++.+.+      .++.+++.|++|=-|+|||.+++++|.++| 
T Consensus        83 aHi~~~E~Ga~~~~~~~~~~--~~~~g~~Gklt~e~v~~~i~~~d~~~~~~~~~~~e~~~te~GtVy~l~el~~i~~~~-  159 (342)
T COG2008          83 AHIYTDECGAPEFFGGGQKL--PIVPGADGKLTPEDVEAAIRPDDIHHAPTPLAVLENTATEGGTVYPLDELEAISAVC-  159 (342)
T ss_pred             CCCEECCCCCHHHHCCCCEE--CCCCCCCCCCCHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCEECCHHHHHHHHHHH-
T ss_conf             31202356758887388543--047987787399999976367776558875079861367786664899999999999-


Q ss_pred             CCCCCEEECCCCC--CCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCC-CCCHHHHHHHHHHHCCCCCCC
Q ss_conf             3332011101221--1000001223322211123332257414654432234454442-211012268753100122233
Q gi|254780602|r  195 RNPHVHIISDDIY--EHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTGLRIGY-AAGALSLIKSMIVLQGQQTSG  271 (400)
Q Consensus       195 ~~~~i~ii~De~Y--~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~-~v~~~~li~~l~~~~~~~~~~  271 (400)
                      +++++.+-.|-+=  .-++..+.....+.+..     .++++ ++||..+.|+   |- ++++.++++++...+......
T Consensus       160 k~~~l~LHmDGAR~~nA~valg~~~~~~~~~~-----D~v~~-~~tK~g~~~~---gAiv~gn~~~~~~a~~~rK~~Ggl  230 (342)
T COG2008         160 KEHGLPLHMDGARLANALVALGVALKTIKSYV-----DSVSF-CLTKGGGAPV---GAIVFGNRDFAKRARRWRKRAGGL  230 (342)
T ss_pred             HHHCCCEEECHHHHHHHHHHCCCCHHHHHHHC-----CEEEE-ECCCCCCCEE---EEEEECCHHHHHHHHHHHHHHCCC
T ss_conf             98099544040889889987398889987428-----89999-1314775213---258973899999989999986562


Q ss_pred             CCC--CCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCHHHHHHCCCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCH
Q ss_conf             222--222222222346764322222211000--0000245530477603302740899862641023321133224898
Q gi|254780602|r  272 ACS--IAQWAAVEALNGPQDFVVNNRKIFEYR--RDLCVAQLQGVPGIRYMIPDGAFYLYPSCQDLIGKKSPSGDVIRTD  347 (400)
Q Consensus       272 ~~~--~~q~a~~~~l~~~~~~~~~~~~~~~~~--r~~~~~~L~~~~g~~~~~p~g~~y~~~~~~~~~~~~~~~~~~~~~~  347 (400)
                      .+.  +.-.+...+|++. -|..   .....+  ...+.+.|++.+|+++..|.-+-.+|+++++...          +.
T Consensus       231 ~~k~r~laA~~~~~l~~~-~~~~---~~~Han~mA~~La~~~~~~~G~~~~~~~~tN~vf~~l~~~~i----------~~  296 (342)
T COG2008         231 MRKARFLAAQGLYALEDD-VWRL---AADHANAMAARLAEGLEAKPGVKLAFPVETNMVFVRLPESAI----------EA  296 (342)
T ss_pred             HHHHHHHHHHHHHHHHCC-HHHH---HHHHHHHHHHHHHHHHHHCCCCEECCCCCCCEEEEECCHHHH----------HH
T ss_conf             766548999999997315-8888---878889999999976532689434367766279997776788----------99


Q ss_pred             HHHHHHHHHHCCEEEECCCCCCCCCEEEEEE--ECCHHHHHHHHHHHHHHH
Q ss_conf             9999999987397998350228997289996--299999999999999999
Q gi|254780602|r  348 LDFVNGLLEIEKVAVVQGSSFGHGPSIRISY--AVSDAILEEACVRIKRFC  396 (400)
Q Consensus       348 ~~~~~~Ll~~~gV~v~pG~~Fg~~~~iRis~--~~~~e~l~~al~rl~~~l  396 (400)
                      ..+.. .+...|+.+.++.     .-+|+..  .++++++++.+.-++.++
T Consensus       297 l~~~~-~~~~~~~~~~~~~-----~~vRfvts~a~~~edv~~~~~~~~~~~  341 (342)
T COG2008         297 LRLAG-ALFYRGVLIGAHG-----EIVRFVTSWATSEEDVDELVAAIKALL  341 (342)
T ss_pred             HHHHC-HHHEEEEECCCCC-----CEEEEEEECCCCHHHHHHHHHHHHHHH
T ss_conf             97515-2120012215777-----558998502499999999999999964


No 177
>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=99.67  E-value=8.6e-16  Score=116.25  Aligned_cols=165  Identities=19%  Similarity=0.281  Sum_probs=109.7

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----CCCCCCC
Q ss_conf             699877898999999998642101333322332334543333222222233223222233332322222----2222222
Q gi|254780602|r   63 KYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDM----VALCGGI  138 (400)
Q Consensus        63 ~Y~~~~G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l~~~~~~~~~~Gd~Vlv~~P~y~~y~~~----~~~~g~~  138 (400)
                      -|+- .|.| .++++.+.+...-|    .+.-+.++.+..||..++.+++++||+|++++..|..-...    +...|.+
T Consensus        62 ~YsR-~gNP-T~~~lE~~la~LEg----g~~a~~~sSGmAAI~~~ll~ll~~Gdhiv~~~~lYggT~~l~~~~l~~~GI~  135 (437)
T PRK05613         62 VYSR-LTNP-TVEALENRIASLEG----GVHAVAFASGQAATTAAILNLAGAGDHIVTSPRLYGGTETLFLVTLNRLGIE  135 (437)
T ss_pred             EEEC-CCCH-HHHHHHHHHHHHHC----CCCEEEECCHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCE
T ss_conf             1208-9887-89999999999839----9858996589999999999972889989978987634789977677516815


Q ss_pred             CCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC
Q ss_conf             22222222232221033310001221220121135421000012333321112233333201110122110000012233
Q gi|254780602|r  139 PVFVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFS  218 (400)
Q Consensus       139 ~~~v~~~~~~~~~~d~~~l~~~i~~~~k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~  218 (400)
                      +.+++..      -|++.++++++++||+||+=+|.|||..+.+   +++|+++ ++++++.+|+|..+.--.+    ..
T Consensus       136 ~~fvd~~------~d~~~~~~~i~~~Tklv~~EtpsNP~l~v~D---i~~ia~i-A~~~g~~~vVDNTfatP~~----~~  201 (437)
T PRK05613        136 TTFVENP------DDPESWQAAVQPNTKAFFGETFANPQADVLD---IPAVAEV-AHRNQVPLIIDNTIATAAL----VR  201 (437)
T ss_pred             EEEECCC------CCHHHHHHHCCCCCEEEEEECCCCCCCCCCC---HHHHHHH-HHHCCCEEEECCCCCCHHC----CC
T ss_conf             8994799------9999999737878559999879998653357---9999999-9876983995166520310----68


Q ss_pred             CCCCCCCCCCCEEEEECCCCCCCCCCCCCC-CCCCC
Q ss_conf             222111233322574146544322344544-42211
Q gi|254780602|r  219 NIVNVEPSLYERTLVVNGVSKAYAMTGLRI-GYAAG  253 (400)
Q Consensus       219 s~~~~~~~~~~~~i~~~S~SK~~~~~G~Ri-G~~v~  253 (400)
                      ++ .+  +   --|++.|.||..+--|-=+ |.++.
T Consensus       202 Pl-~~--G---aDiVvhS~TKYl~GHsDvlgG~vv~  231 (437)
T PRK05613        202 PL-EL--G---ADVVVASLTKFYTGNGSGLGGVLID  231 (437)
T ss_pred             HH-HH--C---CCEEEEECCCCCCCCCCEEEEEEEE
T ss_conf             56-74--8---9889995551226887645169984


No 178
>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=99.67  E-value=9.2e-16  Score=116.08  Aligned_cols=155  Identities=21%  Similarity=0.291  Sum_probs=106.5

Q ss_pred             CCCCCC-CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----CCCCCCC
Q ss_conf             699877-89899999999864210133332233233454333322222223322322223333232222----2222222
Q gi|254780602|r   63 KYTAVA-GISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPD----MVALCGG  137 (400)
Q Consensus        63 ~Y~~~~-G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l~~~~~~~~~~Gd~Vlv~~P~y~~y~~----~~~~~g~  137 (400)
                      +|--++ |.| .++++.+.+...-|    .+.-++++.+..||..++.+++.+||+|++++..|..-..    .+...|.
T Consensus        55 g~~YsR~gnP-T~~~lE~~la~LEg----~~~a~~~sSGmaAis~~ll~ll~~Gdhiv~~~~~YggT~~l~~~~l~~~Gi  129 (431)
T PRK08248         55 GNIYTRIMNP-TNDVFEKRIAALEG----GVGALAVSSGQAAVTYSILNIASAGDEIVSSSSLYGGTYNLFAHTLPKLGI  129 (431)
T ss_pred             CCEEECCCCH-HHHHHHHHHHHHHC----CCCEEEECCHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHCCCE
T ss_conf             9633189886-79999999999839----984899546999999999997377998997278648889998742323887


Q ss_pred             CCCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCC
Q ss_conf             22222222223222103331000122122012113542100001233332111223333320111012211000001223
Q gi|254780602|r  138 IPVFVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQF  217 (400)
Q Consensus       138 ~~~~v~~~~~~~~~~d~~~l~~~i~~~~k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~  217 (400)
                      ++.+++.       -|+++++++++++||+||+=+|.|||-.+.+   +++|+++| +++++.+++|..+.--.+    +
T Consensus       130 ~v~~vD~-------~d~~~~~~~i~~~Tkli~~EsPsNP~l~v~D---i~~ia~iA-~~~g~~~vVDNTfatP~~----~  194 (431)
T PRK08248        130 TVKFVDP-------SDPENFEAAITDKTKALFAETIGNPKGDVLD---IEAVADIA-HRHHIPLIVDNTFASPYL----L  194 (431)
T ss_pred             EEEEECC-------CCHHHHHHHCCCCCEEEEEECCCCCCCCCCC---HHHHHHHH-HHCCCEEEEECCCCCHHH----C
T ss_conf             9999899-------7757799753777459996048999874227---89999999-776985998667530321----5


Q ss_pred             CCCCCCCCCCCCEEEEECCCCCCCCC
Q ss_conf             32221112333225741465443223
Q gi|254780602|r  218 SNIVNVEPSLYERTLVVNGVSKAYAM  243 (400)
Q Consensus       218 ~s~~~~~~~~~~~~i~~~S~SK~~~~  243 (400)
                      .++ .+  +   --|++.|.||.++-
T Consensus       195 ~Pl-~~--G---aDivvhS~TKYi~G  214 (431)
T PRK08248        195 RPI-EF--G---ADIVVHSATKFIGG  214 (431)
T ss_pred             CHH-HH--C---CCEEEEECCEECCC
T ss_conf             834-52--8---98899966512368


No 179
>PRK08574 cystathionine gamma-synthase; Provisional
Probab=99.66  E-value=5.1e-16  Score=117.62  Aligned_cols=223  Identities=14%  Similarity=0.182  Sum_probs=136.8

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---CCCCCC
Q ss_conf             69987789899999999864210133332233233454333322222223322322223333232222222---222222
Q gi|254780602|r   63 KYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDMVA---LCGGIP  139 (400)
Q Consensus        63 ~Y~~~~G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l~~~~~~~~~~Gd~Vlv~~P~y~~y~~~~~---~~g~~~  139 (400)
                      .|+- .|.|- ++++.+.+...-|    .+.-++++.+..||..++.+++++||+|++++..|..-..+++   ..|.++
T Consensus        46 ~YsR-~gnPT-~~~le~~la~LEg----~~~a~~~sSGmaAi~~~ll~~l~~Gd~il~~~~~Yg~t~~l~~~l~~~Gi~v  119 (384)
T PRK08574         46 KYSR-EENPT-VRPLEEKLAKLEG----GVDALAFNSGMAAISTLFFSLLKAGDEVVLPMEAYGTTLRLLKSLEKFGVRV  119 (384)
T ss_pred             EEEC-CCCHH-HHHHHHHHHHHHC----CCEEEEECCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHCCEE
T ss_conf             0438-98865-9999999999819----9718995587999999999816899989984897145999999998608579


Q ss_pred             CCCCCCCCCCCCCHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCC
Q ss_conf             22222222322210333100012212201211354210000123333211122333332011101221100000122332
Q gi|254780602|r  140 VFVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSN  219 (400)
Q Consensus       140 ~~v~~~~~~~~~~d~~~l~~~i~~~~k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s  219 (400)
                      ..+..+       +.+.+++.++++||+||+-+|.|||..+.+   +++|+++ ++++++.+++|..+.--.+    +.+
T Consensus       120 ~~~~~~-------~~~~~~~~~~~~Tklv~~EspsNP~l~v~D---i~~ia~i-A~~~g~~~vvDNT~atP~~----~~P  184 (384)
T PRK08574        120 RLAYPS-------TEDLIEAIKESRTKLVFIETITNPTLRVID---VPEVAKA-AKDLGAILVVDNTFATPIL----YRP  184 (384)
T ss_pred             EEECCC-------CHHHHHHHCCCCCEEEEEECCCCCCCCCCC---HHHHHHH-HHHCCCEEEEECCCCHHHH----CCH
T ss_conf             994899-------789999744788549999889998763478---5999999-9775985997377512642----680


Q ss_pred             CCCCCCCCCCEEEEECCCCCCCCCCCC-CCCCCCC-HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             221112333225741465443223445-4442211-01226875310012223322222222222234676432222221
Q gi|254780602|r  220 IVNVEPSLYERTLVVNGVSKAYAMTGL-RIGYAAG-ALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGPQDFVVNNRKI  297 (400)
Q Consensus       220 ~~~~~~~~~~~~i~~~S~SK~~~~~G~-RiG~~v~-~~~li~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~  297 (400)
                      + ..  +   --|++.|.||.++--|- =.|.+++ .+++.+.+...+.....++++...+.++..|+.    +.-..+.
T Consensus       185 l-~~--G---aDivvhS~TKyi~GHsdv~~G~vv~~~~~~~~~l~~~~~~~G~~lsp~~a~l~~rgl~T----L~lR~~~  254 (384)
T PRK08574        185 L-EH--G---ADFVVHSLTKYIAGHNDVLGGVAVVWNGEFLEELWVWRRRLGTIMQPFEAWLVLRGLKT----LEVRFER  254 (384)
T ss_pred             H-HH--C---CCEEEEECCCEECCCCCCEEEEEEECCHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCC----HHHHHHH
T ss_conf             6-64--8---98899954621038867341389835178899999999982898892347888606587----9999999


Q ss_pred             CCCCCCCHHHHHHCCCCCE
Q ss_conf             1000000024553047760
Q gi|254780602|r  298 FEYRRDLCVAQLQGVPGIR  316 (400)
Q Consensus       298 ~~~~r~~~~~~L~~~~g~~  316 (400)
                      -.++...+.+.|++.|.++
T Consensus       255 ~~~nA~~lA~~L~~hp~V~  273 (384)
T PRK08574        255 QCENAMAIAEFLSEHPKVR  273 (384)
T ss_pred             HHHHHHHHHHHHHCCCCCC
T ss_conf             9999999999997099988


No 180
>PRK07582 cystathionine gamma-lyase; Validated
Probab=99.66  E-value=2.3e-16  Score=119.76  Aligned_cols=219  Identities=17%  Similarity=0.166  Sum_probs=136.8

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----CCCCCCC
Q ss_conf             699877898999999998642101333322332334543333222222233223222233332322222----2222222
Q gi|254780602|r   63 KYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDM----VALCGGI  138 (400)
Q Consensus        63 ~Y~~~~G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l~~~~~~~~~~Gd~Vlv~~P~y~~y~~~----~~~~g~~  138 (400)
                      -|+- .|.| .++++.+.+...-|    .+.-++++.+..|+..++.+++.+||+|++++..|..-...    +...|.+
T Consensus        46 ~YsR-~gNP-T~~~lE~~la~LEg----~~~a~~~sSGmaAi~~~l~~ll~~Gd~iv~~~~~Yggt~~l~~~~l~~~Gi~  119 (370)
T PRK07582         46 TYGR-SSNP-TWRQLESALGELEG----GAAALVFGSGMAAITAVLRALLRPGDTVVVPADGYYQVRALAREYLAPLGVT  119 (370)
T ss_pred             EEEC-CCCH-HHHHHHHHHHHHCC----CCEEEEECCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHCCEE
T ss_conf             5538-9986-89999999999719----9718986487999999999970899989977887779999999887506816


Q ss_pred             CCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCC-CCCCCCCC
Q ss_conf             22222222232221033310001221220121135421000012333321112233333201110122110-00001223
Q gi|254780602|r  139 PVFVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEH-IVYRNCQF  217 (400)
Q Consensus       139 ~~~v~~~~~~~~~~d~~~l~~~i~~~~k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~-l~~~~~~~  217 (400)
                      +.+++          .+++.+++.++||+||+-+|.|||..+.+   +++|+++| +++++++++|..+.- +.     +
T Consensus       120 v~~~~----------~~d~~~~~~~~tklv~~EspsNP~l~v~D---i~~ia~~A-~~~gi~~vVDNT~atP~~-----~  180 (370)
T PRK07582        120 VREAP----------TAGMAEAAAGAADLVLAETPSNPGLDVVD---LARLARAC-HAAGALLVVDNTTATPLG-----Q  180 (370)
T ss_pred             EEECC----------CHHHHHHHCCCCCEEEEECCCCCCCEEEC---CHHHHHHH-HHCCCEEEEECCCCCHHH-----C
T ss_conf             89538----------55178772257738999779998865335---38889999-876996999889840642-----4


Q ss_pred             CCCCCCCCCCCCEEEEECCCCCCCCCCC-CCCCCCCC-HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             3222111233322574146544322344-54442211-012268753100122233222222222222346764322222
Q gi|254780602|r  218 SNIVNVEPSLYERTLVVNGVSKAYAMTG-LRIGYAAG-ALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGPQDFVVNNR  295 (400)
Q Consensus       218 ~s~~~~~~~~~~~~i~~~S~SK~~~~~G-~RiG~~v~-~~~li~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~  295 (400)
                      .++ .+  +   --|++.|.||.++--| .=.|++++ ++++.+++...+.....++++...+.++..|+.    +.-..
T Consensus       181 ~Pl-~~--G---ADivvhS~TKYl~Ghsd~lgG~v~~~~~~~~~~~~~~~~~~G~~~sP~~a~lllrGl~T----L~lRm  250 (370)
T PRK07582        181 RPL-EL--G---ADLVVASDTKALSGHSDLLAGYVAGRDPELMAAVERWRLLAGAIPGPFEAWLAHRSLAT----LGLRF  250 (370)
T ss_pred             CCH-HC--C---CCEEEEEECEEECCCCCCCCEEEECCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCC----HHHHH
T ss_conf             800-21--8---98698850435247887403287258888999999999852887887889999861086----88999


Q ss_pred             CCCCCCCCCHHHHHHCCCCCE
Q ss_conf             211000000024553047760
Q gi|254780602|r  296 KIFEYRRDLCVAQLQGVPGIR  316 (400)
Q Consensus       296 ~~~~~~r~~~~~~L~~~~g~~  316 (400)
                      ++-.++...+.+.|++.|.++
T Consensus       251 ~r~~~nA~~lA~~L~~hp~V~  271 (370)
T PRK07582        251 ERQCQNALAVAELLREHPAVR  271 (370)
T ss_pred             HHHHHHHHHHHHHHHCCCCCC
T ss_conf             999878999999997099967


No 181
>PRK02936 argD acetylornithine aminotransferase; Provisional
Probab=99.66  E-value=1.6e-15  Score=114.54  Aligned_cols=330  Identities=17%  Similarity=0.181  Sum_probs=190.6

Q ss_pred             HCCCCEEECCCCCC--CCC-CCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf             86997266565897--498-899999999999838875699877898999999998642101333322332334543333
Q gi|254780602|r   28 SKGIDVLCLTAGEP--DFD-MPENVKYAVVRAMERGETKYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVI  104 (400)
Q Consensus        28 ~~g~~ii~l~~G~p--~~~-~p~~i~~a~~~al~~~~~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l  104 (400)
                      .+|+..+|+..|.-  .+. -+|.|.+|+++.+++-.  |....-..++++.+|+.+....    ..+.|.+++++++|.
T Consensus        26 ~dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~ql~~~~--~~~~~~~~~~~~~la~~l~~~~----~~~~v~f~~sGsEAv   99 (377)
T PRK02936         26 NNGKQYLDFTSGIAVCNLGHCHPTVTKAVQEQLDDIW--HVSNLFTNSLQEEVASLLTENS----AGDLVFFCNSGAEAN   99 (377)
T ss_pred             CCCCEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHCC--CCCCHHCCHHHHHHHHHHHCCC----CCCEEEEECCHHHHH
T ss_conf             9879999966298860105897999999999986578--8662010489999999732068----878899968777899


Q ss_pred             CCCCCCCC-CC-CCCCCCCCCCCCCCCCCC-CCCCCCCCC---CCCCCCCCCC--CHHHHHHCCCCCCCCCEEECCC-CC
Q ss_conf             22222223-32-232222333323222222-222222222---2222223222--1033310001221220121135-42
Q gi|254780602|r  105 FNALMATV-NM-GDEVLIPRPYWVSYPDMV-ALCGGIPVF---VDTQQDDNFQ--VSPEKLEQAITPKTKWLFLNSP-SN  175 (400)
Q Consensus       105 ~~~~~~~~-~~-Gd~Vlv~~P~y~~y~~~~-~~~g~~~~~---v~~~~~~~~~--~d~~~l~~~i~~~~k~i~l~nP-~N  175 (400)
                      ..+++.-- .. ...|+...-+|-.....+ ...|-....   -|+.++-.+.  .|++.+++.+.++..++++ -| +.
T Consensus       100 e~AiklAr~~tgr~~ii~~~~~yHG~T~ga~s~t~~~~~~~~~~~~~~~~~~~p~~d~~~l~~~~~~~iAavi~-EPiqg  178 (377)
T PRK02936        100 EAALKLARKHTGKSKIVTFEQSFHGRTFGTMSATGQEKIKEGFGPLLPGFLHVPFNDIKALEEVMNEEVAAVML-EVVQG  178 (377)
T ss_pred             HHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHCCCCCCCCCCCCCCCCEEECCCCCHHHHHHCCCCCEEEEEE-ECCCC
T ss_conf             99999988755998799987855114432001058743345778999981446745899998516896789999-78767


Q ss_pred             CCCCC-CCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC-CCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf             10000-12333321112233333201110122110000012233-22211123332257414654432234454442211
Q gi|254780602|r  176 PSGVV-YSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFS-NIVNVEPSLYERTLVVNGVSKAYAMTGLRIGYAAG  253 (400)
Q Consensus       176 PTG~v-~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~-s~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~v~  253 (400)
                      -.|.+ .+++-++++.++| +++|+++|.||++..+.=.|.-+. .-..+.|+     |++  ++|..+ .|+-+|.+++
T Consensus       179 ~gG~~~~~~~yl~~lr~lc-~~~gillI~DEV~tGfGRtG~~~a~e~~gv~PD-----ii~--~gK~l~-~G~P~sav~~  249 (377)
T PRK02936        179 EGGVIPADLSFLQEVQTLC-KKFGALLIIDEVQTGIGRTGTLFAYEQFGLEPD-----IVT--VAKGLG-NGIPVGAMIG  249 (377)
T ss_pred             CCCCCCCCHHHHHHHHHHH-HHCCCCEECCCCCCCCCCCCCCCHHHHCCCCCC-----EEE--EEHHHC-CCCCCCCEEC
T ss_conf             8897689999999999999-982984571221127765567203644498876-----788--620102-7898733303


Q ss_pred             HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCHHHHHH----CCCCCEEEECCCCEEEE
Q ss_conf             0122687531001222332222222222223467--64322222211000000024553----04776033027408998
Q gi|254780602|r  254 ALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGP--QDFVVNNRKIFEYRRDLCVAQLQ----GVPGIRYMIPDGAFYLY  327 (400)
Q Consensus       254 ~~~li~~l~~~~~~~~~~~~~~~q~a~~~~l~~~--~~~~~~~~~~~~~~r~~~~~~L~----~~~g~~~~~p~g~~y~~  327 (400)
                      .+++.+.+.......+.+.+.+...++.+.|+.-  ++.+++    .+++-+.+.+.|+    ..+.+.-++.. |+++=
T Consensus       250 ~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~i~~~~l~~~----~~~~g~~l~~~L~~~~~~~~~i~~vRG~-Gl~~g  324 (377)
T PRK02936        250 KKELGSAFTAGSHGSTFGGNYLAMAAAKEVLQVIKQPSFLEE----VQEKGEYFLQKLQEELQHVECVKNIRGK-GLMIG  324 (377)
T ss_pred             CHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHH----HHHHHHHHHHHHHHHHHCCCCEEEEEEC-CEEEE
T ss_conf             287763037899888898599999999999999851119999----9999999999999984369966771255-69999


Q ss_pred             EECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCCCCEEEEE--EECCHHHHHHHHHHHHHHH
Q ss_conf             62641023321133224898999999998739799835022899728999--6299999999999999999
Q gi|254780602|r  328 PSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGHGPSIRIS--YAVSDAILEEACVRIKRFC  396 (400)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~iRis--~~~~~e~l~~al~rl~~~l  396 (400)
                      +++.             .+..+++..+ .++|+++.|+.    ++.||++  +..+++++++++++|.+.|
T Consensus       325 ie~~-------------~~~~~~~~~~-~~~Gll~~~~g----~~~ir~~PpL~it~~ei~~~l~~l~~aL  377 (377)
T PRK02936        325 IECT-------------HEVAPFIEQL-REEGLLVLQAG----PNVIRLLPPLIVTKEELDQAVYMLKKVL  377 (377)
T ss_pred             EEEC-------------CCHHHHHHHH-HHCCEEEEECC----CCEEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf             9977-------------8599999999-96992994368----9989996990288999999999999869


No 182
>PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional
Probab=99.65  E-value=4e-15  Score=112.19  Aligned_cols=339  Identities=14%  Similarity=0.118  Sum_probs=188.8

Q ss_pred             HCCCCEEECCCC--CCCCC-CCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf             869972665658--97498-899999999999838875699877898999999998642101333322332334543333
Q gi|254780602|r   28 SKGIDVLCLTAG--EPDFD-MPENVKYAVVRAMERGETKYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVI  104 (400)
Q Consensus        28 ~~g~~ii~l~~G--~p~~~-~p~~i~~a~~~al~~~~~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l  104 (400)
                      ..|++.||+..|  ...+. -+|.|.+|+++.+++-.+  ....-..+.+..+|+.+....    -.++|.+++++++|.
T Consensus        36 ~dG~~yLD~~~g~~~~~lGh~~p~v~~Ai~~q~~~l~~--~~~~~~~~~~~~la~~L~~~~----~~~~v~f~~SGsEAv  109 (406)
T PRK12381         36 QQGKEYIDFAGGIAVNALGHAHPALREALNEQASKFWH--TGNGYTNEPVLRLAKKLIDAT----FADRVFFCNSGAEAN  109 (406)
T ss_pred             CCCCEEEECCCCHHHCEECCCCHHHHHHHHHHHHHCCC--CCCCCCCHHHHHHHHHHHHCC----CCCEEEEECCHHHHH
T ss_conf             99899999160887452389989999999999865566--778736889999999987305----876499948777899


Q ss_pred             CCCCCCCC-------CCC-CCCCCCCCCCCCCCCCCCCCCCCCCC----CCCCCCCCC--CCHHHHHHCCCCCCCCCEEE
Q ss_conf             22222223-------322-32222333323222222222222222----222222322--21033310001221220121
Q gi|254780602|r  105 FNALMATV-------NMG-DEVLIPRPYWVSYPDMVALCGGIPVF----VDTQQDDNF--QVSPEKLEQAITPKTKWLFL  170 (400)
Q Consensus       105 ~~~~~~~~-------~~G-d~Vlv~~P~y~~y~~~~~~~g~~~~~----v~~~~~~~~--~~d~~~l~~~i~~~~k~i~l  170 (400)
                      ..+++..-       .++ +.|+...-+|-.........+..+.+    .|+.++-.+  .-|++.+++.+.+++-++++
T Consensus       110 e~AiKlAr~~~~~~~~~~r~~Ii~~~~~yHG~t~~~~s~~g~~~~~~~~~p~~~~~~~~~~~d~~~~~~~~~~~~aAviv  189 (406)
T PRK12381        110 EAALKLARKYAHDRYGNHKSGIVAFKNAFHGRTLFTVSAGGQPKYSQDFAPLPPDIRHAAYNDLNSASALIDDQTCAVIV  189 (406)
T ss_pred             HHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEE
T ss_conf             99999999999863899987699967876788322321578733356778899744356522299999973888359999


Q ss_pred             CCC-CCCCCCC-CCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCC-CCCCCCCCCCEEEEECCCCCCCCCCCCC
Q ss_conf             135-4210000-123333211122333332011101221100000122332-2211123332257414654432234454
Q gi|254780602|r  171 NSP-SNPSGVV-YSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSN-IVNVEPSLYERTLVVNGVSKAYAMTGLR  247 (400)
Q Consensus       171 ~nP-~NPTG~v-~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s-~~~~~~~~~~~~i~~~S~SK~~~~~G~R  247 (400)
                       -| +--.|.+ .+++-+++|-++| +++|+++|.||+...+.-.|.-+.. -..+.|+     |++  ++|.++ .|+-
T Consensus       190 -EPiqg~gG~~~~~~~yl~~lr~lc-~~~gillI~DEV~tG~GRtG~~~a~~~~gv~PD-----iv~--~gK~lg-gG~P  259 (406)
T PRK12381        190 -EPIQGEGGVIPADKAFLQGLRELC-DRHNALLIFDEVQTGVGRTGELYAYMHYGVTPD-----VLT--TAKALG-GGFP  259 (406)
T ss_pred             -ECCCCCCCCCCCCHHHHHHHHHHE-ECCCCEEECCCCEECCCCCCCCCCCCCCCCCCC-----EEE--ECCCCC-CCCE
T ss_conf             -064566883268989999999752-115837974442007776667653546678998-----899--742024-8860


Q ss_pred             CCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCC----CCCEEEECCCC
Q ss_conf             44221101226875310012223322222222222234676432222221100000002455304----77603302740
Q gi|254780602|r  248 IGYAAGALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQGV----PGIRYMIPDGA  323 (400)
Q Consensus       248 iG~~v~~~~li~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~~~~~L~~~----~g~~~~~p~g~  323 (400)
                      +|.+++.+++.+.+.......+.+.+.+...++.+.|+.-++  ++..+..+++-+++.+.|+++    +-+.-++.. |
T Consensus       260 ~sav~~~~~i~~~~~~~~h~~T~~gnpla~aaa~a~L~~i~~--~~l~~~~~~~g~~l~~~L~~l~~~~~~i~dVRG~-G  336 (406)
T PRK12381        260 IGAMLTTEKYASVMTVGTHGTTYGGNPLASAVAGKVLDLINT--PEMLNGVKQRHDWFVERLNTINARYGLFSEIRGL-G  336 (406)
T ss_pred             EEEEEECHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEC-C
T ss_conf             489987288786528887663898699999999999999975--5699999999999999999988738988863025-2


Q ss_pred             EEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCCCCEEEEE--EECCHHHHHHHHHHHHHHHHHC
Q ss_conf             899862641023321133224898999999998739799835022899728999--6299999999999999999860
Q gi|254780602|r  324 FYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGHGPSIRIS--YAVSDAILEEACVRIKRFCHSL  399 (400)
Q Consensus       324 ~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~iRis--~~~~~e~l~~al~rl~~~l~~l  399 (400)
                      +++=+.+...         ......+++..+ .++||++.++.    ++.||++  +..+++++++++++|.+.|++.
T Consensus       337 Lm~giel~~~---------~~~~~~~l~~~~-~~~Gll~~~~g----~n~irl~PPL~it~~eid~~l~~l~~al~~v  400 (406)
T PRK12381        337 LLIGCVLNAE---------YAGKAKQISQEA-AKAGVMVLIAG----PNVVRFAPALNVSEEEIATGLDRFARACERF  400 (406)
T ss_pred             EEEEEEECCC---------CCCHHHHHHHHH-HHCCEEEEECC----CCEEEEECCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             6999996488---------753599999999-97996996079----9969997995389999999999999999999


No 183
>cd00610 OAT_like Acetyl ornithine aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation.
Probab=99.65  E-value=4.7e-15  Score=111.74  Aligned_cols=345  Identities=14%  Similarity=0.126  Sum_probs=185.6

Q ss_pred             HCCCCEEECCCCC--CCCC-CCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf             8699726656589--7498-899999999999838875699877898999999998642101333322332334543333
Q gi|254780602|r   28 SKGIDVLCLTAGE--PDFD-MPENVKYAVVRAMERGETKYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVI  104 (400)
Q Consensus        28 ~~g~~ii~l~~G~--p~~~-~p~~i~~a~~~al~~~~~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l  104 (400)
                      ..|+..||+..|.  ..+. -+|.|.+|+.+.++...+ +.......+....+++.+.+..+.  +.+.|.+++++++|.
T Consensus        33 ~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~-~~~~~~~~~~~~~la~~l~~~~p~--~~~~v~f~~sGsEA~  109 (413)
T cd00610          33 VDGNRYLDFLSGIGVLNLGHNHPEVVEALKEQLAKLTH-FSLGFFYNEPAVELAELLLALTPE--GLDKVFFVNSGTEAV  109 (413)
T ss_pred             CCCCEEEECCCCHHHCCCCCCCHHHHHHHHHHHHHCCC-CCCCCCCCHHHHHHHHHHHHHCCC--CCCEEEEECCHHHHH
T ss_conf             99799999670676446578988999999999974897-257866888999999999985699--848799818777999


Q ss_pred             CCCCCCCC-C-CCCCCCCCCCCCCCCCCCC-CCCCC------------CCCCCCCC----CCCCCCCHHHHHHCCCCC--
Q ss_conf             22222223-3-2232222333323222222-22222------------22222222----223222103331000122--
Q gi|254780602|r  105 FNALMATV-N-MGDEVLIPRPYWVSYPDMV-ALCGG------------IPVFVDTQ----QDDNFQVSPEKLEQAITP--  163 (400)
Q Consensus       105 ~~~~~~~~-~-~Gd~Vlv~~P~y~~y~~~~-~~~g~------------~~~~v~~~----~~~~~~~d~~~l~~~i~~--  163 (400)
                      ..+++..- . ..+.|+...-+|-.....+ ...|.            ....+|..    ......-|++++++.+.+  
T Consensus       110 e~AiklAr~~t~r~~ii~~~~~yHG~t~~als~t~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~d~~~l~~~~~~~~  189 (413)
T cd00610         110 EAALKLARAYTGRKKIISFEGAYHGRTLGALSLTGSKKYRGGFGPLLPGVLHVPYPYRYRPPAELADDLEALEEALEEHP  189 (413)
T ss_pred             HHHHHHHHHHCCCCEEEEECCCCCCCCHHHEEECCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHCC
T ss_conf             99999999973998899986884787663344137832245778888996680898765554322778999999997389


Q ss_pred             -CCCCEEECCC-CCCCCCC-CCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC-CCCCCCCCCCCEEEEECCCCC
Q ss_conf             -1220121135-4210000-12333321112233333201110122110000012233-222111233322574146544
Q gi|254780602|r  164 -KTKWLFLNSP-SNPSGVV-YSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFS-NIVNVEPSLYERTLVVNGVSK  239 (400)
Q Consensus       164 -~~k~i~l~nP-~NPTG~v-~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~-s~~~~~~~~~~~~i~~~S~SK  239 (400)
                       ++-++++ -| ..-.|.+ .+++-+++|.++| +++++++|.||+...|.=.|.-+. .-..+.|+     |+  +++|
T Consensus       190 ~~iAavi~-EPi~g~~G~~~~~~~yl~~lr~lc-~~~gillI~DEV~tGfGRtG~~~a~~~~gv~PD-----iv--t~gK  260 (413)
T cd00610         190 EEVAAVIV-EPIQGEGGVIVPPPGYLKALRELC-RKHGILLIADEVQTGFGRTGKMFAFEHFGVEPD-----IV--TLGK  260 (413)
T ss_pred             CCEEEEEE-ECCCCCCCCCCCCHHHHHHHHHHE-EECCCEEEEEECEECCCCCCCCCHHHHCCCCCC-----EE--EECC
T ss_conf             97899999-798788998738889978886328-605806985202007775454312332581787-----56--5233


Q ss_pred             CCCCCCCCCCCCCCHHHHHHHHHH--HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHC----CC
Q ss_conf             322344544422110122687531--001222332222222222223467643222222110000000245530----47
Q gi|254780602|r  240 AYAMTGLRIGYAAGALSLIKSMIV--LQGQQTSGACSIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQG----VP  313 (400)
Q Consensus       240 ~~~~~G~RiG~~v~~~~li~~l~~--~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~~~~~L~~----~~  313 (400)
                      .++ .|+-+|.+++.+++.+.+..  .....+.+.+.+...++.+.|+.-++  ++..+..+++-+++.+.|++    .+
T Consensus       261 ~lg-gG~Pisav~~~~~i~~~~~~~~~~h~~T~~gnp~~~Aaa~a~L~~i~~--e~l~~~~~~~g~~l~~~L~~l~~~~~  337 (413)
T cd00610         261 GLG-GGLPLGAVLGREEIMDAFPAGPGLHGGTFGGNPLACAAALAVLEVLEE--EGLLENAAELGEYLRERLRELAEKHP  337 (413)
T ss_pred             CCC-CCCCCEEEEECHHHHHHHHCCCCEECCCCCCCHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             456-889860477759999986338850677888884999999999999842--56999999999999999999997489


Q ss_pred             CCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCCCCEEEEE--EECCHHHHHHHHHH
Q ss_conf             7603302740899862641023321133224898999999998739799835022899728999--62999999999999
Q gi|254780602|r  314 GIRYMIPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGHGPSIRIS--YAVSDAILEEACVR  391 (400)
Q Consensus       314 g~~~~~p~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~iRis--~~~~~e~l~~al~r  391 (400)
                      -+.-+...|-|+ =+.+.+......+.   ......+...+ .++||++.|..    .+.+|++  +..+++++++++++
T Consensus       338 ~i~~vrG~Gl~~-gie~~~~~~~~~~~---~~~~~~i~~~~-~~~Gvl~~~~g----~~~l~~~Ppl~it~~eid~~~~~  408 (413)
T cd00610         338 LVGDVRGRGLMI-GIELVKDRATKPPD---KELAAKIIKAA-LERGLLLRPSG----GNVIRLLPPLIITEEEIDEGLDA  408 (413)
T ss_pred             CCEEEEEECEEE-EEEEECCCCCCCCC---HHHHHHHHHHH-HHCCEEEECCC----CCEEEEECCCCCCHHHHHHHHHH
T ss_conf             936964324499-99993687767758---99999999999-97994891179----99899978836899999999999


Q ss_pred             HHHHH
Q ss_conf             99999
Q gi|254780602|r  392 IKRFC  396 (400)
Q Consensus       392 l~~~l  396 (400)
                      |.+.|
T Consensus       409 l~~aL  413 (413)
T cd00610         409 LDEAL  413 (413)
T ss_pred             HHHHC
T ss_conf             99869


No 184
>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional
Probab=99.65  E-value=5.8e-16  Score=117.30  Aligned_cols=334  Identities=16%  Similarity=0.163  Sum_probs=184.2

Q ss_pred             CCEEECCCCCCCCCCCHHHHHHHHHHHHCCCC--CCC-------CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf             97266565897498899999999999838875--699-------877898999999998642101333322332334543
Q gi|254780602|r   31 IDVLCLTAGEPDFDMPENVKYAVVRAMERGET--KYT-------AVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAK  101 (400)
Q Consensus        31 ~~ii~l~~G~p~~~~p~~i~~a~~~al~~~~~--~Y~-------~~~G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~  101 (400)
                      ++.||+.==+-.--.+++.++|+.+-= +|..  -|+       ..+...+..+.+++|+    |+    |++.++||++
T Consensus        17 ~~~in~~piq~gg~lt~ea~ka~~~~g-dgysvcd~C~~~LD~i~~Ppi~~f~~~la~fl----g~----D~~rlvnGar   87 (386)
T PRK09331         17 EEMINLDPIQRGGRLTPEARKALIEYG-DGYSVCDYCKGRLDKIEKPPIADFHEDLAKFL----GM----DEARVTPGAR   87 (386)
T ss_pred             HCCCCCCHHHHCCCCCHHHHHHHHHHC-CCCCHHHHHCCHHHCCCCCCHHHHHHHHHHHH----CC----CEEEECCCCC
T ss_conf             313356735526968999999999974-88736645411011255998899999999984----99----6378528842


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCHH----HHHHCCCCC--CCCCEEECCCC
Q ss_conf             33322222223322322223333-232222222222222222222223222103----331000122--12201211354
Q gi|254780602|r  102 HVIFNALMATVNMGDEVLIPRPY-WVSYPDMVALCGGIPVFVDTQQDDNFQVSP----EKLEQAITP--KTKWLFLNSPS  174 (400)
Q Consensus       102 ~~l~~~~~~~~~~Gd~Vlv~~P~-y~~y~~~~~~~g~~~~~v~~~~~~~~~~d~----~~l~~~i~~--~~k~i~l~nP~  174 (400)
                      +|++.++.++|+|||.|+++.-+ |..| ..+..+|+.+++++...+..|.+.+    +.+++.+.+  +.+++++.  .
T Consensus        88 ~g~qAv~~a~c~~GD~VIl~rnaHyS~~-~A~elaG~~~~~v~~~~~~~~~I~~~~~~~~Iee~~~e~gk~~aL~ll--t  164 (386)
T PRK09331         88 EGKFAVMHALCKKGDYVVLDGLAHYTSY-VAAERAGLNVREVPKTGYPDYRITPEAYAEKIEEVEDETGKPPALALL--T  164 (386)
T ss_pred             HHHHHHHHHHHCCCCEEEECCCCHHHHH-HHHHHCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEE--E
T ss_conf             7899999986369997984484059999-999975985899368777234508005799999999861898559999--6


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCH
Q ss_conf             21000012333321112233333201110122110000012233222111233322574146544322344544422110
Q gi|254780602|r  175 NPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTGLRIGYAAGA  254 (400)
Q Consensus       175 NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~v~~  254 (400)
                      |||+..=...++++|+++| +++|+.++.||+|..    +.-+.+...+  ++   -+++.|..|+.+..+ .+|.+...
T Consensus       165 ~pdy~yGn~~d~~~i~~ia-h~~~ip~lvdeA~~~----~~~P~~a~~~--Ga---D~~v~S~HK~~~s~t-~sgvL~~~  233 (386)
T PRK09331        165 HVDGNYGNLHDAKKIAKVA-HQYGIPLLLNGAYTV----GRMPVDGKEL--GA---DFIVGSGHKSMAASA-PSGVLATT  233 (386)
T ss_pred             CCCCCCCCHHHHHHHHHHH-HHCCCCEEEECCCCC----CCCCCCHHHC--CC---CEEEEECCCCCCCCC-CCEEEECC
T ss_conf             8886644546389999999-874981898144335----7789746663--99---889863454442346-31244304


Q ss_pred             HHHHHHHHH-----------HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEE--ECC
Q ss_conf             122687531-----------0012223322222222222234676432222221100000002455304776033--027
Q gi|254780602|r  255 LSLIKSMIV-----------LQGQQTSGACSIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQGVPGIRYM--IPD  321 (400)
Q Consensus       255 ~~li~~l~~-----------~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~~~~~L~~~~g~~~~--~p~  321 (400)
                      .+.++...+           +.+.+..+.+.....|   -|..-.+.+... ...-++.+++.+.|++++|+.+.  .|.
T Consensus       234 ~e~~d~v~R~s~~~~~Kev~mLgcTs~g~psy~LMA---Sfd~vrerv~~~-d~ev~~ar~~~~El~kIeG~~~lge~P~  309 (386)
T PRK09331        234 EEYADKVFRTSKKFGVKEVELLGCTLRGAPLVTLMA---SFPHVKERVKNW-DEEVEKARWFVDELEKIEGFKQLGEKPR  309 (386)
T ss_pred             CCHHHHHHHCCCCCHHHHHHHHCCCCCCCHHHHHHH---CCHHHHHHHHHH-HHHHHHHHHHHHHHHCCCCHHHCCCCCC
T ss_conf             530155652264305789988536334640899980---659999999877-8999999999999860876554065778


Q ss_pred             CCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEE-CCCCCCCCCEEE-EEEECCHHHHHHHHHHHHHHHHHC
Q ss_conf             408998626410233211332248989999999987397998-350228997289-996299999999999999999860
Q gi|254780602|r  322 GAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVV-QGSSFGHGPSIR-ISYAVSDAILEEACVRIKRFCHSL  399 (400)
Q Consensus       322 g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~-pG~~Fg~~~~iR-is~~~~~e~l~~al~rl~~~l~~l  399 (400)
                      .-=....+-+.+.   ...........+|.+. |++.||... ||.    -+.+- .+|+.+.|+++.-++.|++..+++
T Consensus       310 ~hdl~~fdtt~~~---~ia~~~~~~Gy~l~~~-Lk~r~I~ge~sg~----t~~lkl~s~G~t~E~v~~li~A~keIaeky  381 (386)
T PRK09331        310 NHDLMRFETPSFD---EIAKKHKRRGFFLYEE-LKKRGIHGIKPGL----TKEFKLSTYGLTWEQVEYVADSFKEIAEKY  381 (386)
T ss_pred             CCCCEEECCCCEE---EEHHHCCCCCEEHHHH-HHHCCCEEEECCC----CEEEEEEECCCCHHHHHHHHHHHHHHHHHH
T ss_conf             7774353376412---2232048660567999-9767964995571----017878861787899999999999999982


No 185
>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=99.64  E-value=2.1e-15  Score=113.88  Aligned_cols=158  Identities=15%  Similarity=0.200  Sum_probs=107.6

Q ss_pred             CCCCCCCC-CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----CCCCC
Q ss_conf             75699877-89899999999864210133332233233454333322222223322322223333232222----22222
Q gi|254780602|r   61 ETKYTAVA-GISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPD----MVALC  135 (400)
Q Consensus        61 ~~~Y~~~~-G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l~~~~~~~~~~Gd~Vlv~~P~y~~y~~----~~~~~  135 (400)
                      ..+|.-++ |.| .++++.+.+...-|    .+.-++++.+..||..++.+++++||+|+++...|..-..    .+...
T Consensus        50 ~~g~~YsR~gNP-T~~~lE~~la~LEg----g~~a~~~sSGmaAi~~~ll~ll~~Gd~iv~~~~~YGgT~~l~~~~l~~~  124 (432)
T PRK06702         50 AEGYIYTRIGNP-TLAAFEQKLAELEG----GVGAVATASGQAAIMLAVLNICSSGDHLLCSSTVYGGTFNLFGVSLRKL  124 (432)
T ss_pred             CCCCEECCCCCH-HHHHHHHHHHHHHC----CCCEEEECHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHEECC
T ss_conf             689603189986-79999999999839----9828985328999999999962899989984887121799986402028


Q ss_pred             CCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCC
Q ss_conf             22222222222232221033310001221220121135421000012333321112233333201110122110000012
Q gi|254780602|r  136 GGIPVFVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNC  215 (400)
Q Consensus       136 g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~  215 (400)
                      |.++.+++.+      .+.+++++.++++||+||+-+|.|||..+.+   +++|+++| +++++.+++|..+.-=.    
T Consensus       125 GI~v~~vd~~------~~~~~~~~~~~~~Tkli~~EtpsNP~l~v~D---i~~ia~iA-~~~gi~~vVDNTfatP~----  190 (432)
T PRK06702        125 GIDVTFFNPN------LTADEIVALANDKTKLVYAESLGNPAMNVLN---FKEFSDAA-KELEVPFIVDNTLATPY----  190 (432)
T ss_pred             CEEEEEECCC------CCHHHHHHHCCCCCEEEEEEECCCCCCEEEC---HHHHHHHH-HHCCCEEEEECCCCCCC----
T ss_conf             8799987899------9999999745787508999727999732027---99999999-76698189635764301----


Q ss_pred             CCCCCCCCCCCCCCEEEEECCCCCCCCC
Q ss_conf             2332221112333225741465443223
Q gi|254780602|r  216 QFSNIVNVEPSLYERTLVVNGVSKAYAM  243 (400)
Q Consensus       216 ~~~s~~~~~~~~~~~~i~~~S~SK~~~~  243 (400)
                      -..++ .+  +   --|+++|.||..+-
T Consensus       191 ~~rPl-~~--G---aDiVvhS~TKyi~G  212 (432)
T PRK06702        191 LCQAF-EH--G---ANIIVHSTTKYIDG  212 (432)
T ss_pred             CCCCH-HC--C---CCEEEEECCCCCCC
T ss_conf             04620-12--8---98999853421568


No 186
>PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed
Probab=99.64  E-value=4.3e-15  Score=111.99  Aligned_cols=339  Identities=15%  Similarity=0.144  Sum_probs=187.9

Q ss_pred             HCCCCEEECCCCCC--CCC-CCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf             86997266565897--498-899999999999838875699877898999999998642101333322332334543333
Q gi|254780602|r   28 SKGIDVLCLTAGEP--DFD-MPENVKYAVVRAMERGETKYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVI  104 (400)
Q Consensus        28 ~~g~~ii~l~~G~p--~~~-~p~~i~~a~~~al~~~~~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l  104 (400)
                      ..|+..||+..|.-  .+. -+|.|.+|+++.+++-.+  ....-..+.+..+|+.+.+..    ..|.|++++++++|.
T Consensus        37 ~dG~~ylD~~~g~~~~~lGh~~p~I~~Ai~~Q~~~l~~--~~~~~~~~~~~~lae~L~~~~----~~drv~f~~SGSEAv  110 (403)
T PRK05093         37 QQGREYIDFAGGIAVTALGHCHPALVKALKEQGEKLWH--ISNVFTNEPALRLAKKLVDAT----FAERVFFANSGAEAN  110 (403)
T ss_pred             CCCCEEEECCCCHHHCEECCCCHHHHHHHHHHHHHCCC--CCCCCCCHHHHHHHHHHHHCC----CCCEEEEECCHHHHH
T ss_conf             99799999550888503289979999999999875577--757414889999999986416----877599838677899


Q ss_pred             CCCCCCC-------CCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCC----CCCCCCCC--CCHHHHHHCCCCCCCCCEEE
Q ss_conf             2222222-------3322-322223333232222222222222222----22222322--21033310001221220121
Q gi|254780602|r  105 FNALMAT-------VNMG-DEVLIPRPYWVSYPDMVALCGGIPVFV----DTQQDDNF--QVSPEKLEQAITPKTKWLFL  170 (400)
Q Consensus       105 ~~~~~~~-------~~~G-d~Vlv~~P~y~~y~~~~~~~g~~~~~v----~~~~~~~~--~~d~~~l~~~i~~~~k~i~l  170 (400)
                      ..+++.-       ..+| ..|+...-+|-.........+..+.+-    |...+-..  ..|++++++.+.+++-++++
T Consensus       111 E~AiklAr~~~~~~~~~~r~~ii~~~~~yHG~t~~a~s~~g~~~~~~~~~p~~~~~~~~p~~d~~~l~~~~~~~iaAvii  190 (403)
T PRK05093        111 EAALKLARRYACDRHGPEKTEIIAFHNSFHGRTLFTVSVGGQPKYSDGFGPKPADITHVPFNDLAALKAVIDDKTCAVVV  190 (403)
T ss_pred             HHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHCCCCHHCCCCCCCCCCCEECCCCCHHHHHHCCCCCEEEEEE
T ss_conf             99999999999972899875477775886888368776258801102778999775655633688886033774479999


Q ss_pred             CCC-CCCCCCC-CCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCC-CCCCCCCCCCEEEEECCCCCCCCCCCCC
Q ss_conf             135-4210000-123333211122333332011101221100000122332-2211123332257414654432234454
Q gi|254780602|r  171 NSP-SNPSGVV-YSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSN-IVNVEPSLYERTLVVNGVSKAYAMTGLR  247 (400)
Q Consensus       171 ~nP-~NPTG~v-~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s-~~~~~~~~~~~~i~~~S~SK~~~~~G~R  247 (400)
                       -| +.=.|.+ .+++-+++|.++| +++|+++|.||++..+.=.|.-+.. -..+.|+     |+  .++|..+ .|+-
T Consensus       191 -EPi~g~gG~~~~~~~yl~~lr~lc-~~~gillI~DEV~tG~GRtG~~fa~e~~gv~PD-----iv--~~gKglg-gG~P  260 (403)
T PRK05093        191 -EPIQGEGGVIPATPEFLQGLRELC-DKHNALLIFDEVQTGMGRTGDLYAYMHYGVTPD-----IL--TSAKALG-GGFP  260 (403)
T ss_pred             -ECCCCCCCCCCCCHHHHHHHHHHH-HHCCEEEEEEEEEECCCCCCCCCCCCCCCCCCC-----EE--EECCCCC-CCCC
T ss_conf             -576678997589999999999863-016837986013426887777522236898998-----89--9730015-8864


Q ss_pred             CCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCC----CCCEEEECCCC
Q ss_conf             44221101226875310012223322222222222234676432222221100000002455304----77603302740
Q gi|254780602|r  248 IGYAAGALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQGV----PGIRYMIPDGA  323 (400)
Q Consensus       248 iG~~v~~~~li~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~~~~~L~~~----~g~~~~~p~g~  323 (400)
                      +|.+++.+++.+.+.......+.+.+.+...++.+.|+.-++  ++..+..+++-+++.+.|+++    +.+.-++..| 
T Consensus       261 lsav~~~~~i~~~~~~~~~g~T~~g~pla~aaala~L~~i~~--~~l~~~a~~~G~~l~~~L~~l~~~~~~i~~VRG~G-  337 (403)
T PRK05093        261 IGAMLTTAEIASHFKVGTHGSTYGGNPLACAVAEAVFDIINT--PEVLEGVKAREQRFVDGLQKINEKYGVFSEIRGKG-  337 (403)
T ss_pred             EEEEEECHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECC-
T ss_conf             279987288786507877265898589999999999999963--44999999999999999999986289826665412-


Q ss_pred             EEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCCCCEEEEE--EECCHHHHHHHHHHHHHHHHHC
Q ss_conf             899862641023321133224898999999998739799835022899728999--6299999999999999999860
Q gi|254780602|r  324 FYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGHGPSIRIS--YAVSDAILEEACVRIKRFCHSL  399 (400)
Q Consensus       324 ~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~iRis--~~~~~e~l~~al~rl~~~l~~l  399 (400)
                      +++=+++.+..         .....++...++ +.|+.+.++.    ++.||++  +..+++++++++++|.+.+.++
T Consensus       338 lm~giel~~~~---------~~~a~~i~~~~~-~~Gll~~~~g----~n~irl~PPL~it~~eid~~l~~l~~al~eV  401 (403)
T PRK05093        338 LLIGAELNEQY---------KGRARDFLYAAA-EEGVMVLVAG----PDVLRFAPSLVIPDADIDEGLARFEKAVAKV  401 (403)
T ss_pred             EEEEEEECCCC---------CHHHHHHHHHHH-HCCCEEECCC----CCEEEEECCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             69999965875---------216999999999-6892895279----9979997884489999999999999999998


No 187
>PRK02627 acetylornithine aminotransferase; Provisional
Probab=99.64  E-value=7.4e-15  Score=110.55  Aligned_cols=333  Identities=18%  Similarity=0.187  Sum_probs=186.2

Q ss_pred             HCCCCEEECCCCC--CCCC-CCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf             8699726656589--7498-899999999999838875699877898999999998642101333322332334543333
Q gi|254780602|r   28 SKGIDVLCLTAGE--PDFD-MPENVKYAVVRAMERGETKYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVI  104 (400)
Q Consensus        28 ~~g~~ii~l~~G~--p~~~-~p~~i~~a~~~al~~~~~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l  104 (400)
                      .+|+..+|+..|-  ..+. -+|.|.+|+.+.+++-.  +....-.-+.+..+|+.+.+..+    .+.|++++++++|.
T Consensus        36 ~dG~~ylD~~~g~~~~~lGH~~p~i~~Ai~~Q~~~l~--h~~~~~~~~~~~~lae~L~~~~~----~~~v~f~~sGseAv  109 (398)
T PRK02627         36 DDGKEYLDFLAGIAVNSLGHAHPKLVEAIQEQAAKLI--HTSNLYYIPPQEELAEKLVELSG----MDKVFFCNSGAEAN  109 (398)
T ss_pred             CCCCEEEECCCCHHHCCCCCCCHHHHHHHHHHHHHCC--CCCCCCCCHHHHHHHHHHHHHCC----CCEEEEECCHHHHH
T ss_conf             9889999867178749427898999999999998567--86665467089999999975249----98799828779999


Q ss_pred             CCCCCCC-------CCCCC-CCCCCCCCCCCCCCC-CCCCCCCCC---CCCCCCCCCCC--CHHHHHHCCCC-CCCCCEE
Q ss_conf             2222222-------33223-222233332322222-222222222---22222223222--10333100012-2122012
Q gi|254780602|r  105 FNALMAT-------VNMGD-EVLIPRPYWVSYPDM-VALCGGIPV---FVDTQQDDNFQ--VSPEKLEQAIT-PKTKWLF  169 (400)
Q Consensus       105 ~~~~~~~-------~~~Gd-~Vlv~~P~y~~y~~~-~~~~g~~~~---~v~~~~~~~~~--~d~~~l~~~i~-~~~k~i~  169 (400)
                      ..++...       ..+|. +|+...-+|-..... ....|....   +-|+.++-.+.  .|++++++.+. +++-+++
T Consensus       110 E~AiKlAr~y~~~~~~~~r~~ii~~~~syHG~T~ga~s~tg~~~~~~~~~p~~~~~~~~p~~d~~~l~~~~~~~~iAAvi  189 (398)
T PRK02627        110 EAAIKLARKYGHTKGGIEKPEIITAENSFHGRTLATLSATGQPKYQKGFEPLVPGFIYVPFNDIEALEAAINNPRTAAVL  189 (398)
T ss_pred             HHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHCCCCEEEEE
T ss_conf             99999999998864788886799953786999751001378822236767888880562477299999984589879999


Q ss_pred             ECCC-CCCCCC-CCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCC-CCCCCCCCCCEEEEECCCCCCCCCCCC
Q ss_conf             1135-421000-0123333211122333332011101221100000122332-221112333225741465443223445
Q gi|254780602|r  170 LNSP-SNPSGV-VYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSN-IVNVEPSLYERTLVVNGVSKAYAMTGL  246 (400)
Q Consensus       170 l~nP-~NPTG~-v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s-~~~~~~~~~~~~i~~~S~SK~~~~~G~  246 (400)
                      + -| +.-.|. +.+++.++++.++| +++|+++|.||+...|.=.|.-+.. -..+.|+     |+  +++|..+ .|+
T Consensus       190 ~-EPiqg~gG~~~~~~~yl~~lr~lc-~~~gillI~DEV~tGfGRtG~~fa~e~~gv~PD-----iv--~~gKgl~-gG~  259 (398)
T PRK02627        190 L-EPIQGEGGVNPADKEYLQALRELC-DENNILLILDEVQTGMGRTGKLFAYQHYGIEPD-----IM--TLAKGLG-GGV  259 (398)
T ss_pred             E-CCCCCCCCCCCCCHHHHHHHHHHH-HHCCCCEEEECCCCCCCCCCCCHHHHCCCCCCC-----EE--EECCCCC-CCC
T ss_conf             8-278888898658888999999998-650740775300017785565104332697888-----57--7600024-889


Q ss_pred             CCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCHHHHHH----CCCCCEEEEC
Q ss_conf             44422110122687531001222332222222222223467--64322222211000000024553----0477603302
Q gi|254780602|r  247 RIGYAAGALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGP--QDFVVNNRKIFEYRRDLCVAQLQ----GVPGIRYMIP  320 (400)
Q Consensus       247 RiG~~v~~~~li~~l~~~~~~~~~~~~~~~q~a~~~~l~~~--~~~~~~~~~~~~~~r~~~~~~L~----~~~g~~~~~p  320 (400)
                      -+|.+++.+++.+.+..-....+.+.+++...++.+.|+.-  ++.+++    .+++-+.+.+.|+    +.+.+.-++.
T Consensus       260 Plsav~~~~~i~~~~~~g~h~~T~~gnpla~aaa~a~L~~i~~~~l~~~----~~~~g~~l~~~L~~l~~~~~~v~~vRG  335 (398)
T PRK02627        260 PIGAVLAKGKAADVFTPGDHGSTFGGNPLACAAALAVLDIIEEEGLLEN----AAERGEYLRAGLRELLEKYPIIKEVRG  335 (398)
T ss_pred             CCCCEECCHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHH----HHHHHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf             8712431699996367998788899998999999999999986489999----999999999999999971998367732


Q ss_pred             CCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCCCCEEEEE--EECCHHHHHHHHHHHHHHHHH
Q ss_conf             740899862641023321133224898999999998739799835022899728999--629999999999999999986
Q gi|254780602|r  321 DGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGHGPSIRIS--YAVSDAILEEACVRIKRFCHS  398 (400)
Q Consensus       321 ~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~iRis--~~~~~e~l~~al~rl~~~l~~  398 (400)
                      .| +++=+++.             .+..+++..++ +.|+++.|..    ++.+|+.  +..+++++++++++|.+.|+.
T Consensus       336 ~G-l~~giel~-------------~~~~~~~~~~~-~~Gll~~~~g----~~~ir~~PPL~it~~eid~~~~~l~~al~e  396 (398)
T PRK02627        336 LG-LMIGIELK-------------RPAKELVKKAL-EKGLLINVTG----DNVLRLLPPLIISKEEIDELVDRLDEVLKE  396 (398)
T ss_pred             CC-EEEEEEEC-------------CCHHHHHHHHH-HCCCEEEECC----CCEEEEECCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             25-79999967-------------87999999999-7897895079----998999889208999999999999999998


Q ss_pred             C
Q ss_conf             0
Q gi|254780602|r  399 L  399 (400)
Q Consensus       399 l  399 (400)
                      +
T Consensus       397 v  397 (398)
T PRK02627        397 L  397 (398)
T ss_pred             H
T ss_conf             6


No 188
>TIGR03246 arg_catab_astC succinylornithine transaminase family. Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason.
Probab=99.64  E-value=5.3e-15  Score=111.43  Aligned_cols=337  Identities=15%  Similarity=0.162  Sum_probs=187.8

Q ss_pred             HCCCCEEECCCCCC--CCC-CCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf             86997266565897--498-899999999999838875699877898999999998642101333322332334543333
Q gi|254780602|r   28 SKGIDVLCLTAGEP--DFD-MPENVKYAVVRAMERGETKYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVI  104 (400)
Q Consensus        28 ~~g~~ii~l~~G~p--~~~-~p~~i~~a~~~al~~~~~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l  104 (400)
                      .+|+..+|+..|.-  .+. -+|.|.+|+++.++.-.  +....-..+-+..+|+.+....    -.+.|.+++++++|.
T Consensus        32 ~dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~~~--~~~~~~~~~~~~~la~~L~~~~----~~~~v~f~~sGsEA~  105 (397)
T TIGR03246        32 QQGKEYIDFAGGIAVNALGHAHPELVKALIEQADKLW--HIGNGYTNEPVLRLAKKLVDAT----FADKVFFCNSGAEAN  105 (397)
T ss_pred             CCCCEEEECCCCHHHHHHCCCCHHHHHHHHHHHHHCC--CCCCCCCCHHHHHHHHHHHHHC----CCCEEEECCCHHHHH
T ss_conf             9879999946348766557898899999999996577--7768634889999999997514----877699728677899


Q ss_pred             CCCCCCCC-------CCC-CCCCCCCCCCCCCCCCCCCCCCCCCC----CCCCCCCCC--CCHHHHHHCCCCCCCCCEEE
Q ss_conf             22222223-------322-32222333323222222222222222----222222322--21033310001221220121
Q gi|254780602|r  105 FNALMATV-------NMG-DEVLIPRPYWVSYPDMVALCGGIPVF----VDTQQDDNF--QVSPEKLEQAITPKTKWLFL  170 (400)
Q Consensus       105 ~~~~~~~~-------~~G-d~Vlv~~P~y~~y~~~~~~~g~~~~~----v~~~~~~~~--~~d~~~l~~~i~~~~k~i~l  170 (400)
                      ..+++.--       .++ ..|+...-+|-.........+..+.+    -|...+-..  .-|++.+++.+.+++-++++
T Consensus       106 e~AlklAr~~~~~~~~~~k~~iis~~~~yHG~t~~~~s~~~~~~~~~~~~p~~~~~~~~~~~d~~~~~~~~~~~iaAvi~  185 (397)
T TIGR03246       106 EAALKLARRYALDKHGADKSEIVAFKNSFHGRTLFTVSVGGQPKYSQGFAPLPGGIKHAPYNDLAAAKALISDKTCAVIV  185 (397)
T ss_pred             HHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCHHHHHHHHCCCEEEEEE
T ss_conf             99999999999851799976899972786898564104689965567888999764204523399999852887379999


Q ss_pred             CCC-CCCCCCC-CCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC-CCCCCCCCCCCEEEEECCCCCCCCCCCCC
Q ss_conf             135-4210000-12333321112233333201110122110000012233-22211123332257414654432234454
Q gi|254780602|r  171 NSP-SNPSGVV-YSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFS-NIVNVEPSLYERTLVVNGVSKAYAMTGLR  247 (400)
Q Consensus       171 ~nP-~NPTG~v-~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~-s~~~~~~~~~~~~i~~~S~SK~~~~~G~R  247 (400)
                       -| +.-.|.+ .+++.++++-++| +++|+++|.||+...|.=.|.-+. .-..+.|+     |++  ++|..+ .|+-
T Consensus       186 -EPv~g~gG~~~~~~~yl~~lr~lc-~~~gillI~DEV~tGfGRtG~~~a~~~~gv~PD-----iv~--~gK~l~-gG~P  255 (397)
T TIGR03246       186 -EPIQGEGGVVPADPAFLKGLRELC-DRHNALLIFDEVQTGVGRTGELYAYMHYGVTPD-----ILT--SAKALG-GGFP  255 (397)
T ss_pred             -ECCCCCCCCCCCCHHHHHHHHHHH-HHCCCEEECCCEEECCCCCCCCCHHHCCCCCCC-----EEE--ECCCCC-CCCE
T ss_conf             -387788898738889999999999-985935863412207877778314322698998-----788--742246-8840


Q ss_pred             CCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCHHHHHHCC----CCCEEEECC
Q ss_conf             4422110122687531001222332222222222223467--6432222221100000002455304----776033027
Q gi|254780602|r  248 IGYAAGALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGP--QDFVVNNRKIFEYRRDLCVAQLQGV----PGIRYMIPD  321 (400)
Q Consensus       248 iG~~v~~~~li~~l~~~~~~~~~~~~~~~q~a~~~~l~~~--~~~~~~~~~~~~~~r~~~~~~L~~~----~g~~~~~p~  321 (400)
                      +|.+++.+++.+.+.......+.+.+.+...++.+.|+.-  ++.++    ..+++-+++.+.|+++    +-+.-++..
T Consensus       256 ~sav~~~~~i~~~~~~~~h~~T~~gnpl~~aaala~L~~i~~e~l~~----~~~~~g~~l~~~L~~l~~~~~~i~~VRG~  331 (397)
T TIGR03246       256 IGAMLTTTEIAAHLKVGTHGTTYGGNPLACAVAGKVLDLVNTPELLA----GVKQRHDLFVDGLEKINARYNVFSEIRGK  331 (397)
T ss_pred             EEEEEECHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHH----HHHHHHHHHHHHHHHHHHHCCCEEEEEEC
T ss_conf             48997448888651877738668829999999999999998547999----99999999999999987417987754224


Q ss_pred             CCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCCCCEEEEE--EECCHHHHHHHHHHHHHHHHHC
Q ss_conf             40899862641023321133224898999999998739799835022899728999--6299999999999999999860
Q gi|254780602|r  322 GAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGHGPSIRIS--YAVSDAILEEACVRIKRFCHSL  399 (400)
Q Consensus       322 g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~iRis--~~~~~e~l~~al~rl~~~l~~l  399 (400)
                       |+++-+++.+.         ......+++..++ +.||++.++.    ++.+|++  +..+++++++++++|.+.++++
T Consensus       332 -Glm~giel~~~---------~~~~a~~i~~~~~-~~Gll~~~~g----~n~lrl~PPL~it~eeid~~l~~l~~al~~v  396 (397)
T TIGR03246       332 -GLLIGAVLTEA---------YQGKAKQFVNAAA-EEGVIALIAG----PNVVRFAPSLVISDDDIDEGLARFERAIEQV  396 (397)
T ss_pred             -CEEEEEEECCC---------CCCHHHHHHHHHH-HCCCEEEECC----CCEEEEECCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             -35999997278---------6335999999999-7892893079----9979997885189999999999999999986


No 189
>PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=99.64  E-value=2.4e-15  Score=113.58  Aligned_cols=164  Identities=16%  Similarity=0.204  Sum_probs=108.7

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----CCCCCC
Q ss_conf             6998778989999999986421013333223323345433332222222332232222333323222222----222222
Q gi|254780602|r   63 KYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDMV----ALCGGI  138 (400)
Q Consensus        63 ~Y~~~~G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l~~~~~~~~~~Gd~Vlv~~P~y~~y~~~~----~~~g~~  138 (400)
                      -|+- .|.| .++++.+.+...-|    .+.-++++.+..||..++.+++++||+|+++...|..-..++    ...|.+
T Consensus        62 ~YsR-~gNP-T~~~LE~~la~LEg----~~~a~~~sSGmaAi~~~ll~ll~~Gdhiv~~~~~YggT~~l~~~~l~~~Gi~  135 (436)
T PRK07812         62 IYTR-IMNP-TQDVVEQRIAALEG----GVAALFLASGQAAETFAILNLAGAGDHIVSSPRLYGGTYNLFHYTLPKLGIE  135 (436)
T ss_pred             EECC-CCCH-HHHHHHHHHHHHHC----CCCEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCCC
T ss_conf             4208-9886-69999999999829----9878996479999999999961889889994886687899999997652874


Q ss_pred             CCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC
Q ss_conf             22222222232221033310001221220121135421000012333321112233333201110122110000012233
Q gi|254780602|r  139 PVFVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFS  218 (400)
Q Consensus       139 ~~~v~~~~~~~~~~d~~~l~~~i~~~~k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~  218 (400)
                      +.+++   +   .-|+++++++++++||+||+=+|.|||-.+.+   +++|+++| +++++.+++|..+.--.+    +.
T Consensus       136 v~fv~---d---~~d~~~~~~~i~~~Tklv~~EtpsNP~l~v~D---i~~ia~iA-~~~g~~~vVDNTfatP~~----~~  201 (436)
T PRK07812        136 VSFVE---D---PDDLDSWRAAVRPNTKAFFAETISNPQIDILD---IPGVAEVA-HEAGVPLIVDNTIATPYL----IR  201 (436)
T ss_pred             EEEEC---C---CCCHHHHHHHCCCCCEEEEEECCCCCCEECCC---HHHHHHHH-HHCCCEEEEECCCCCCCC----CC
T ss_conf             16967---9---98899999745867439999648998605236---69999999-985992996268646230----37


Q ss_pred             CCCCCCCCCCCEEEEECCCCCCCCCCCCCCC-CCC
Q ss_conf             2221112333225741465443223445444-221
Q gi|254780602|r  219 NIVNVEPSLYERTLVVNGVSKAYAMTGLRIG-YAA  252 (400)
Q Consensus       219 s~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG-~~v  252 (400)
                      ++ .+  +   --|++.|.||..+--|=-+| .++
T Consensus       202 Pl-~~--G---aDivihS~TKyi~GHsDvlgG~vv  230 (436)
T PRK07812        202 PL-EH--G---ADIVVHSATKYLGGHGTAIAGVIV  230 (436)
T ss_pred             CC-CC--C---CCEEEEECCEECCCCCCCEEEEEE
T ss_conf             64-14--8---988999645031589770436998


No 190
>PRK07671 cystathionine beta-lyase; Provisional
Probab=99.63  E-value=1.7e-15  Score=114.51  Aligned_cols=222  Identities=17%  Similarity=0.227  Sum_probs=136.6

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----CCCCCCC
Q ss_conf             699877898999999998642101333322332334543333222222233223222233332322222----2222222
Q gi|254780602|r   63 KYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDM----VALCGGI  138 (400)
Q Consensus        63 ~Y~~~~G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l~~~~~~~~~~Gd~Vlv~~P~y~~y~~~----~~~~g~~  138 (400)
                      -|+- .|.| .++++.+.+...-|    .+.-++++.++.||..++. ++.+||+|++.+..|..-...    +...|.+
T Consensus        43 ~Y~R-~~nP-T~~~lE~~la~LEg----~~~a~~~sSGmaAi~a~l~-~~~~Gd~iv~~~~~YggT~~l~~~~l~~~Gi~  115 (377)
T PRK07671         43 EYSR-TGNP-TRAALEELIAVLEN----GHAGFAFGSGMAAITAVMM-LFSSGDHVILTDDVYGGTYRVMTKVLNRFGIE  115 (377)
T ss_pred             CCCC-CCCH-HHHHHHHHHHHHHC----CCEEEEECCHHHHHHHHHH-HHCCCCEEEECCCCCCCHHHHHHHHHHHCCCE
T ss_conf             1418-9886-69999999999839----8627751678899999999-86899989982898277899999888636976


Q ss_pred             CCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC
Q ss_conf             22222222232221033310001221220121135421000012333321112233333201110122110000012233
Q gi|254780602|r  139 PVFVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFS  218 (400)
Q Consensus       139 ~~~v~~~~~~~~~~d~~~l~~~i~~~~k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~  218 (400)
                      +.+++.       -|+++++++++++||+||+-+|.|||-.+.+   +++|+++ |+++++.+++|..+.--.+    ..
T Consensus       116 v~fvd~-------~d~~~~~~ai~~~Tklv~~EspsNP~l~v~D---i~~ia~i-A~~~g~~~vVDNT~atP~~----~~  180 (377)
T PRK07671        116 HTFVDT-------TNLEEVEEAIRPNTKAIYVETPTNPLLKITD---IKKISTL-AKEKGLLTIVDNTFMTPYW----QS  180 (377)
T ss_pred             EEEECC-------CCHHHHHHHCCCCCEEEEEECCCCCCCEECC---HHHHHHH-HHHCCCEEEECCCCCCCCC----CC
T ss_conf             999438-------8868899647888449999789998875016---7999999-9982996985176422022----78


Q ss_pred             CCCCCCCCCCCEEEEECCCCCCCCCCCC-CCCCCC-CHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             2221112333225741465443223445-444221-10122687531001222332222222222223467643222222
Q gi|254780602|r  219 NIVNVEPSLYERTLVVNGVSKAYAMTGL-RIGYAA-GALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGPQDFVVNNRK  296 (400)
Q Consensus       219 s~~~~~~~~~~~~i~~~S~SK~~~~~G~-RiG~~v-~~~~li~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~  296 (400)
                      ++ .+  +   --|++.|.||.++--|= =.|.++ .++++.+.+...+.....++++...+.+...|+.    +.-..+
T Consensus       181 Pl-~~--G---aDivvhS~TKyl~GHsD~~~G~vv~~~~~~~~~~~~~~~~~G~~lsP~~a~L~lRGL~T----L~lRm~  250 (377)
T PRK07671        181 PI-SL--G---ADIVLHSATKYLGGHSDVVAGLVVVNSPELAEDLHFVQNSTGGILGPQDSFLLLRGLKT----LGIRME  250 (377)
T ss_pred             HH-HH--C---CCEEEEECCCEECCCCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCC----HHHHHH
T ss_conf             77-72--8---87899945753047877525289967789999999999863577884777898706886----999999


Q ss_pred             CCCCCCCCHHHHHHCCCCCE
Q ss_conf             11000000024553047760
Q gi|254780602|r  297 IFEYRRDLCVAQLQGVPGIR  316 (400)
Q Consensus       297 ~~~~~r~~~~~~L~~~~g~~  316 (400)
                      +-.++...+.+.|++.|.++
T Consensus       251 r~~~nA~~vA~~L~~hp~V~  270 (377)
T PRK07671        251 EHETNSRAIAEFLNNHPKVN  270 (377)
T ss_pred             HHHHHHHHHHHHHHHCCCCC
T ss_conf             99999999999986199844


No 191
>PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional
Probab=99.63  E-value=1.9e-15  Score=114.21  Aligned_cols=325  Identities=14%  Similarity=0.160  Sum_probs=188.7

Q ss_pred             CCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             98899999999999838875699877898999999998642101333322332334543333222222233223222233
Q gi|254780602|r   43 FDMPENVKYAVVRAMERGETKYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFNALMATVNMGDEVLIPR  122 (400)
Q Consensus        43 ~~~p~~i~~a~~~al~~~~~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l~~~~~~~~~~Gd~Vlv~~  122 (400)
                      .+.|+.|++||.+    ....+.+  -..++-+.+.+.+++.++..-+..-|+++..++.|+..++..+++|||+|++.+
T Consensus        14 t~v~~~V~~Am~~----~~~~~~~--eF~~l~~~~~~~L~~l~~~~~~~~~v~~~gSGT~amEaai~nl~~~gdkvLv~~   87 (368)
T PRK13479         14 LTTSRTTREAMLR----DWGSWDD--DFNAITASVRADLVAIATGEEGYTCVPLQGSGTFSVEAAIGSLVPRDGKVLVPD   87 (368)
T ss_pred             CCCCHHHHHHHCC----CCCCCCH--HHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHCCCCCCEEEEEC
T ss_conf             9999999997475----7789877--899999999999999957888707999716867999999961547999799981


Q ss_pred             CCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCC--CCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             3323--222222222222222222222322210333100012--212201211354210000123333211122333332
Q gi|254780602|r  123 PYWV--SYPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQAIT--PKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPH  198 (400)
Q Consensus       123 P~y~--~y~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~--~~~k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~  198 (400)
                      =+..  -+..+++.+|..++.++.+...  .+|++++++++.  ++.+++++++---.||...+   +++|.++| ++|+
T Consensus        88 ~G~FG~R~~~ia~~~g~~v~~l~~~~g~--~~~~~~ve~~L~~~~~~~~v~~vH~ETSTGvln~---l~~i~~~~-~~~~  161 (368)
T PRK13479         88 NGAYGARIAKIAEYLGIAHVVLDTGEDE--PPDAAAVEAALAADPRITHVALVHCETTTGILNP---LDEIAAVV-KRHG  161 (368)
T ss_pred             CCHHHHHHHHHHHHHCCCEEEEECCCCC--CCCHHHHHHHHHHCCCCCEEEEEECCCCCCCCCC---HHHHHHHH-HHCC
T ss_conf             7927999999999819975998789999--8899999999974999678999850677203167---99999999-8549


Q ss_pred             CEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCC-CCCCCCCCCCCHHHHHHHHHHH-CC----------
Q ss_conf             01110122110000012233222111233322574146544322-3445444221101226875310-01----------
Q gi|254780602|r  199 VHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYA-MTGLRIGYAAGALSLIKSMIVL-QG----------  266 (400)
Q Consensus       199 i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~-~~G~RiG~~v~~~~li~~l~~~-~~----------  266 (400)
                      ..+|+|-+=+   +.+.+      +..+.+.--+++.+--|.++ .||  +++++.+++.++..... .+          
T Consensus       162 ~lliVDaVSs---~G~~~------~~~d~wgiD~~~tgSQK~l~~pPG--Ls~v~~s~~a~~~~~~~~~~~yldl~~~~~  230 (368)
T PRK13479        162 KRLIVDAMSS---FGAIP------IDIAELGIDALISSANKCIEGVPG--FGFVIARRSALEACKGNSRSLALDLYDQWA  230 (368)
T ss_pred             CEEEEECCCC---CCCCE------ECCCCCCEEEEEECCCCCCCCCCC--CEEEEECHHHHHHHHCCCCCCCCCHHHHHH
T ss_conf             8699970200---15721------102445356999537651457997--101220899999874258876636899999


Q ss_pred             ------CCCCCCCCCCCCCCCCCCCCC-CC-CCCCCCCCCCCCCCCHHHHHHCCCCCEEEECCCCEEEEEECCCCCCCCC
Q ss_conf             ------222332222222222223467-64-3222222110000000245530477603302740899862641023321
Q gi|254780602|r  267 ------QQTSGACSIAQWAAVEALNGP-QD-FVVNNRKIFEYRRDLCVAQLQGVPGIRYMIPDGAFYLYPSCQDLIGKKS  338 (400)
Q Consensus       267 ------~~~~~~~~~~q~a~~~~l~~~-~~-~~~~~~~~~~~~r~~~~~~L~~~~g~~~~~p~g~~y~~~~~~~~~~~~~  338 (400)
                            .....++...-.+.-++|+.- ++ -++...+++++..+.+.+.++++ |++...+++..     -+.......
T Consensus       231 ~~~~~~~~~~Tp~v~li~aL~eaL~~i~~EGgl~~r~~r~~~~~~~~~~~~~~l-Gl~~~~~~~~~-----s~tvtav~~  304 (368)
T PRK13479        231 YMEKTGQWRFTPPTHVVAAFYQALLQLEEEGGVPARGARYARNCRTLVAGMRAL-GFEPLLDDEIQ-----SPIIVTFHA  304 (368)
T ss_pred             HHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHC-CCCCCCCHHHC-----CCCEEEEEC
T ss_conf             986449988688289999999999999983188999999999999999999973-87657894565-----986799976


Q ss_pred             CCCCCCCCHHHHHHHHHHHCCEEEECCCCCCCCCEEEEEE-E-CCHHHHHHHHHHHHHHHHHC
Q ss_conf             1332248989999999987397998350228997289996-2-99999999999999999860
Q gi|254780602|r  339 PSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGHGPSIRISY-A-VSDAILEEACVRIKRFCHSL  399 (400)
Q Consensus       339 ~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~iRis~-~-~~~e~l~~al~rl~~~l~~l  399 (400)
                      +. ....+..+|...| ++.|+.+.+|. ......|||+. + .+.+++...+..|++.|+++
T Consensus       305 P~-~~~~d~~~~~~~l-~~~g~~i~~G~-~~~~~~fRIGhMG~~~~~di~~~l~ale~~L~~~  364 (368)
T PRK13479        305 PA-DPAYDFKEFYERL-KEQGFVIYPGK-LTQVDTFRIGCIGAVDAADIRRLVAAIAEALYWM  364 (368)
T ss_pred             CC-CCCHHHHHHHHHH-HHCCCEEECCC-CCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHC
T ss_conf             78-8563599999999-97793896885-5778979887799999999999999999999985


No 192
>PRK07049 methionine gamma-lyase; Validated
Probab=99.63  E-value=1.7e-15  Score=114.51  Aligned_cols=229  Identities=17%  Similarity=0.208  Sum_probs=140.7

Q ss_pred             CCCCCC-CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----CCCCCC
Q ss_conf             699877-898999999998642101333322332334543333222222233223222233332322222----222222
Q gi|254780602|r   63 KYTAVA-GISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDM----VALCGG  137 (400)
Q Consensus        63 ~Y~~~~-G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l~~~~~~~~~~Gd~Vlv~~P~y~~y~~~----~~~~g~  137 (400)
                      +|.-++ |.| .++++.+.+...-|    .+.-++++.+..||..++.+++++||+|++.+..|..-..+    +...|.
T Consensus        74 g~~YsR~~NP-T~~~lE~~iA~LEg----~~~a~~~sSGmaAi~~~ll~ll~~Gd~iv~~~~~YggT~~l~~~~l~~~GI  148 (427)
T PRK07049         74 GLVYSRFNHP-NSEIVEDRLAVYEG----AEAAALFSSGMSAIATTLLAFVRPGDVIVHSQPLYGGTETLLAKTFRNFGV  148 (427)
T ss_pred             CCEECCCCCH-HHHHHHHHHHHHCC----CCCEEEECCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHCCC
T ss_conf             9414289887-79999999999809----984899346999999999985189999998999827899999999997598


Q ss_pred             CCCC-CCCCCCCCCCCHHHHHHCCC-----CCCCCCEEECCCCCCCCCCCCCCCCCCCCCCC--CCCCCCEEECCCCCCC
Q ss_conf             2222-22222232221033310001-----22122012113542100001233332111223--3333201110122110
Q gi|254780602|r  138 IPVF-VDTQQDDNFQVSPEKLEQAI-----TPKTKWLFLNSPSNPSGVVYSQNRLRALADVL--VRNPHVHIISDDIYEH  209 (400)
Q Consensus       138 ~~~~-v~~~~~~~~~~d~~~l~~~i-----~~~~k~i~l~nP~NPTG~v~s~~~l~~i~~~~--a~~~~i~ii~De~Y~~  209 (400)
                      +.+. ++.       .|++.+++++     .++||+||+-+|.|||..+.+-+.+.++++-+  ++.+++.+++|..+..
T Consensus       149 ~~~~~~d~-------~d~~~~~~~i~~~~~~~~Tklv~~EspsNP~l~v~Di~~ia~ia~~~g~~~~~~i~~vvDNT~at  221 (427)
T PRK07049        149 GAVGFADG-------VSEAAIEAAAEAAAAKGRVSLIYIETPANPTNALVDVAAVRRVADAIEARQGHRPIIACDNTLLG  221 (427)
T ss_pred             EEEEEECC-------CCHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHCHHCCCCCEEEEECCCCC
T ss_conf             89997089-------99999999998621478706999978999877265889999999984420147876999788623


Q ss_pred             CCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCC-CCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             000012233222111233322574146544322344-5444221101226875310012223322222222222234676
Q gi|254780602|r  210 IVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTG-LRIGYAAGALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGPQ  288 (400)
Q Consensus       210 l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~~~G-~RiG~~v~~~~li~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~  288 (400)
                      -.+    ..++ .+  +   --|++.|.||.++--| .=.|.+++++++++++...+.....+++....+.++..|+.  
T Consensus       222 P~~----~~Pl-~~--G---aDivvhS~TKyl~GHsDvl~G~v~~~~~~~~~l~~~~~~~G~~~sP~~a~L~lrGL~T--  289 (427)
T PRK07049        222 PVF----QKPL-EH--G---ADLSVYSLTKYVGGHSDLVAGAVLGRKALVRQVRALRGAIGTQLDPHSCWMLGRSLET--  289 (427)
T ss_pred             CCC----CCCH-HH--C---CCEEEEECCCEECCCCCCCCCEEECCHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCC--
T ss_conf             213----6815-42--8---9889996361424887751351646799999999987531477890677888636886--


Q ss_pred             CCCCCCCCCCCCCCCCHHHHHHCCCCCEE
Q ss_conf             43222222110000000245530477603
Q gi|254780602|r  289 DFVVNNRKIFEYRRDLCVAQLQGVPGIRY  317 (400)
Q Consensus       289 ~~~~~~~~~~~~~r~~~~~~L~~~~g~~~  317 (400)
                        +.-..++-.++...+.+.|++.|.+..
T Consensus       290 --L~lRm~r~~~nA~~vA~~L~~hp~V~~  316 (427)
T PRK07049        290 --LVLRMERANRNARAVAEFLRDHPKVEK  316 (427)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHCCCCCE
T ss_conf             --999999999999999999984898327


No 193
>PRK03244 argD acetylornithine aminotransferase; Provisional
Probab=99.63  E-value=1.1e-14  Score=109.50  Aligned_cols=336  Identities=16%  Similarity=0.106  Sum_probs=188.5

Q ss_pred             CCCCEEECCCCCC--CCC-CCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             6997266565897--498-8999999999998388756998778989999999986421013333223323345433332
Q gi|254780602|r   29 KGIDVLCLTAGEP--DFD-MPENVKYAVVRAMERGETKYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIF  105 (400)
Q Consensus        29 ~g~~ii~l~~G~p--~~~-~p~~i~~a~~~al~~~~~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l~  105 (400)
                      .|+..||+..|.-  .+. -+|.|.+|+++.+++-  .|.+..-.-+.+..+|+.+....+.+ ....|++++++++|..
T Consensus        41 ~G~~ylD~~~g~~~~~lGh~~p~i~~ai~~q~~~l--~~~~~~~~~~~~~~lae~L~~~~~~~-~~~kvff~~SGsEA~E  117 (398)
T PRK03244         41 DGKEYLDLLGGIAVNALGHAHPAVVEAVTRQLATL--GHVSNLFATEPQIALAERLVALLGAP-EGARVFFCNSGAEANE  117 (398)
T ss_pred             CCCEEEECCCCHHHCCCCCCCHHHHHHHHHHHHHC--CCCCCCCCCHHHHHHHHHHHHHCCCC-CCCEEEEECCHHHHHH
T ss_conf             98999996708875422389899999999999754--77756535869999999999860899-6567997186778999


Q ss_pred             CCCCCCCCCCC-CCCCCCCCCCCCCCCC-CCCCC---CCCCCCCCCCCCCC--CHHHHHHCCCCCCCCCEEECCC-CCCC
Q ss_conf             22222233223-2222333323222222-22222---22222222223222--1033310001221220121135-4210
Q gi|254780602|r  106 NALMATVNMGD-EVLIPRPYWVSYPDMV-ALCGG---IPVFVDTQQDDNFQ--VSPEKLEQAITPKTKWLFLNSP-SNPS  177 (400)
Q Consensus       106 ~~~~~~~~~Gd-~Vlv~~P~y~~y~~~~-~~~g~---~~~~v~~~~~~~~~--~d~~~l~~~i~~~~k~i~l~nP-~NPT  177 (400)
                      .++..--..|. .|+...-+|-.....+ ...|-   +--+-|+...-.+.  .|.+++++.+.+++.+|++ -| +--.
T Consensus       118 ~AlKlAr~tgr~~Iis~~~sYHG~T~ga~s~tg~~~~~~~~~p~~~~~~~~p~~d~~~l~~~~~~~iAAii~-EPiqg~g  196 (398)
T PRK03244        118 AAFKLARLTGRTKIVAAEGGFHGRTMGALALTGQPAKRAPFEPLPGGVEHVPYGDVDALAAAVDDDTAAVFL-EPIQGEA  196 (398)
T ss_pred             HHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHCCCEEEEEE-ECCCCCC
T ss_conf             999999982998799983877688765423368853123467887872771578668999973898589998-5876889


Q ss_pred             CCCC-CCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC-CCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHH
Q ss_conf             0001-2333321112233333201110122110000012233-2221112333225741465443223445444221101
Q gi|254780602|r  178 GVVY-SQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFS-NIVNVEPSLYERTLVVNGVSKAYAMTGLRIGYAAGAL  255 (400)
Q Consensus       178 G~v~-s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~-s~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~v~~~  255 (400)
                      |.+. +++.+++|.++| +++|+++|.||+...+.=.|.-+. ....+.|+     |++  ++|..+ .|+-+|.+++.+
T Consensus       197 G~~~~~~~fl~~l~~lc-~~~gillI~DEV~tGfGRtG~~fa~e~~~v~PD-----Iv~--~gK~lg-gG~P~sa~~~~~  267 (398)
T PRK03244        197 GVVPPPAGYLAAAREIT-DRHGALLVLDEVQTGIGRTGAWFAHQHDGVTPD-----VVT--LAKGLG-GGLPIGACLAFG  267 (398)
T ss_pred             CCCCCCHHHHHHHHHHH-HHHCCCEECCCCCCCCCCCCCCCHHHHCCCCCC-----EEE--ECCCCC-CCCCCEEEEECH
T ss_conf             98568888999999998-573453666621248776678615653379998-----899--732024-887616889718


Q ss_pred             HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCHHHHHHCC--CCCEEEECCCCEEEEEECC
Q ss_conf             22687531001222332222222222223467--6432222221100000002455304--7760330274089986264
Q gi|254780602|r  256 SLIKSMIVLQGQQTSGACSIAQWAAVEALNGP--QDFVVNNRKIFEYRRDLCVAQLQGV--PGIRYMIPDGAFYLYPSCQ  331 (400)
Q Consensus       256 ~li~~l~~~~~~~~~~~~~~~q~a~~~~l~~~--~~~~~~~~~~~~~~r~~~~~~L~~~--~g~~~~~p~g~~y~~~~~~  331 (400)
                      ++.+.+..-....+.+.+.+...++.+.|+.-  ++.++    ..++.-+++.+.|+++  +.+.-++.. |+++-+++.
T Consensus       268 ~~~~~~~~~~h~~T~~gnpl~~aaa~a~L~~i~~~~l~~----~v~~~g~~l~~~L~~l~~~~i~~VRG~-Gl~~giel~  342 (398)
T PRK03244        268 PAADLLTPGLHGSTFGGNPVACAAALAVLRVIADEGLLE----NAERLGKQLRAGIEALGHPLVDHVRGR-GLLLGIVLT  342 (398)
T ss_pred             HHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHH----HHHHHHHHHHHHHHHCCCCCEEEEEEE-EEEEEEEEC
T ss_conf             888641788767478989899999999999997557999----999999999999985489861410012-689999966


Q ss_pred             CCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCCCCEEEEE--EECCHHHHHHHHHHHHHHHHHC
Q ss_conf             1023321133224898999999998739799835022899728999--6299999999999999999860
Q gi|254780602|r  332 DLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGHGPSIRIS--YAVSDAILEEACVRIKRFCHSL  399 (400)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~iRis--~~~~~e~l~~al~rl~~~l~~l  399 (400)
                      ..            ...++...+ .+.|+++.+..    .+.||++  +..+++++++++++|++.|++-
T Consensus       343 ~~------------~~~~~~~~~-~~~Gll~~~~g----~n~ir~~PPl~it~~eid~~~~~l~~~L~~~  395 (398)
T PRK03244        343 AP------------VAKAVEAAA-REAGFLVNAPA----PDVIRLAPPLIITDAQVDAFVAALPAILDAA  395 (398)
T ss_pred             CC------------HHHHHHHHH-HHCCCEECCCC----CCEEEEECCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             73------------199999999-96891993189----9979994995789999999999999999998


No 194
>PRK01278 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Provisional
Probab=99.63  E-value=9.2e-15  Score=109.98  Aligned_cols=335  Identities=16%  Similarity=0.185  Sum_probs=189.1

Q ss_pred             HCCCCEEECCCCCC--CCC-CCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf             86997266565897--498-899999999999838875699877898999999998642101333322332334543333
Q gi|254780602|r   28 SKGIDVLCLTAGEP--DFD-MPENVKYAVVRAMERGETKYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVI  104 (400)
Q Consensus        28 ~~g~~ii~l~~G~p--~~~-~p~~i~~a~~~al~~~~~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l  104 (400)
                      ..|+..||+..|.-  .+. -+|.|.+|+++.+++-.+ .+..-.. +..+.+|+.+....    ..+.|.+++++++|.
T Consensus        28 ~dG~~ylD~~~g~~~~~lGh~~p~i~~ai~~q~~~l~~-~~~~~~~-~~~~~la~~L~~~~----~~d~v~f~~sGsEAv  101 (389)
T PRK01278         28 EDGERYLDFASGIAVNSLGHAHPHLVEALKEQAEKLWH-VSNLYRI-PEQERLAERLVENS----FADKVFFTNSGAEAV  101 (389)
T ss_pred             CCCCEEEECCCCHHHCEECCCCHHHHHHHHHHHHHCCC-CCCCCCC-HHHHHHHHHHHHCC----CCCEEEEECCHHHHH
T ss_conf             99899999360988612289978999999999865667-6565368-79999999975336----768799968748999


Q ss_pred             CCCCCCC----C---CCC-CCCCCCCCCCCCCCCC-CCCCCCC---CCCCCCCCCCC--CCCHHHHHHCCCCCCCCCEEE
Q ss_conf             2222222----3---322-3222233332322222-2222222---22222222232--221033310001221220121
Q gi|254780602|r  105 FNALMAT----V---NMG-DEVLIPRPYWVSYPDM-VALCGGI---PVFVDTQQDDN--FQVSPEKLEQAITPKTKWLFL  170 (400)
Q Consensus       105 ~~~~~~~----~---~~G-d~Vlv~~P~y~~y~~~-~~~~g~~---~~~v~~~~~~~--~~~d~~~l~~~i~~~~k~i~l  170 (400)
                      ..+++.-    .   +++ ..|+...-+|-..... ....|..   ..+-|..+...  -.+|.+.+++.+.+++-++++
T Consensus       102 e~AlklAr~~~~~~g~t~r~~ii~~~~~yHG~t~~~~s~sg~~~~~~~~~p~~~~~~~~~~~d~~~l~~~~~~~iAavii  181 (389)
T PRK01278        102 ECAIKTARRYQYGKGHPERYRIITFEGAFHGRTLATIAATGQEKYLEGFGPLVDGFDQVPFGDIEALKAAITPNTAAILI  181 (389)
T ss_pred             HHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCHHHCCCCCCCCCCEEECCCCCHHHHHHHHCCCCEEEEE
T ss_conf             99999999988853999972899988888867635113578844336668998882467789789999862888179999


Q ss_pred             CCC-CCCCCC-CCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC-CCCCCCCCCCCEEEEECCCCCCCCCCCCC
Q ss_conf             135-421000-012333321112233333201110122110000012233-22211123332257414654432234454
Q gi|254780602|r  171 NSP-SNPSGV-VYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFS-NIVNVEPSLYERTLVVNGVSKAYAMTGLR  247 (400)
Q Consensus       171 ~nP-~NPTG~-v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~-s~~~~~~~~~~~~i~~~S~SK~~~~~G~R  247 (400)
                       -| +.-.|. +.+++.++++-++| +++|+++|.||+...+.=.|.-+. ....+.|+     |+  +++|.++ .|+-
T Consensus       182 -EPi~g~gG~~~~~~~yl~~l~~lc-~~~g~llI~DEV~tGfGRtG~~fa~e~~gv~PD-----iv--~~gK~l~-gG~P  251 (389)
T PRK01278        182 -EPIQGEGGIRPLPDEFLKGLRQLC-DENGLLLIFDEVQCGVGRTGKLFAHEWAGVTPD-----IM--ALAKGIG-GGFP  251 (389)
T ss_pred             -ECCCCCCCCCCCCHHHHHHHHHHH-HHHCCEEEEEEEECCCCCCCCCCHHHCCCCCCC-----EE--EECCCCC-CCCC
T ss_conf             -688888896069999999999999-860653874210007775566422003676898-----67--8701246-8874


Q ss_pred             CCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHC----CCCC-EEEECCC
Q ss_conf             4422110122687531001222332222222222223467643222222110000000245530----4776-0330274
Q gi|254780602|r  248 IGYAAGALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQG----VPGI-RYMIPDG  322 (400)
Q Consensus       248 iG~~v~~~~li~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~~~~~L~~----~~g~-~~~~p~g  322 (400)
                      +|.+++.+++.+.+.......+.+.+.+...++.+.|+.-++  ++..+..+++-+++.+.|++    .|.+ .-++.. 
T Consensus       252 ~sav~~~~ei~~~~~~g~~~~T~~gnp~~~aaala~L~~i~~--~~l~~~v~~~G~~l~~~L~~l~~~~p~~i~~vRG~-  328 (389)
T PRK01278        252 LGACLATEEAAKGMTPGTHGSTYGGNPLAMAVGNAVLDVVLA--PGFLDNVQKMGLYLKQKLESLVDRFPDVIEEVRGE-  328 (389)
T ss_pred             EEEEEECHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEE-
T ss_conf             279986388785436887677999799999999999999986--46999999999999999999987686713556450-


Q ss_pred             CEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCCCCEEEEE--EECCHHHHHHHHHHHHHHHHHC
Q ss_conf             0899862641023321133224898999999998739799835022899728999--6299999999999999999860
Q gi|254780602|r  323 AFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGHGPSIRIS--YAVSDAILEEACVRIKRFCHSL  399 (400)
Q Consensus       323 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~iRis--~~~~~e~l~~al~rl~~~l~~l  399 (400)
                      |+++=+++.             .+..++...++ ++|+++.|+.    ++.+|++  +..+++++++++++|++.++++
T Consensus       329 Gl~~gie~~-------------~~~~~i~~~~~-~~Gll~~~~g----~~~lr~~PpL~it~~ei~~~~~~l~~al~~v  389 (389)
T PRK01278        329 GLMLGLKCV-------------VPSRDLVAALR-DEGLLTVPAG----DNVVRLLPPLIITEEEIDEALERLERAAESL  389 (389)
T ss_pred             EEEEEEEEC-------------CCHHHHHHHHH-HCCCEEEECC----CCEEEEECCCCCCHHHHHHHHHHHHHHHHHC
T ss_conf             369999945-------------88999999999-7993897279----9979997881398999999999999999759


No 195
>PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=99.63  E-value=1.8e-15  Score=114.29  Aligned_cols=165  Identities=19%  Similarity=0.266  Sum_probs=109.8

Q ss_pred             CCCCCCC-CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----CCCCCCCC
Q ss_conf             5699877-898999999998642101333322332334543333222222233223222233332322----22222222
Q gi|254780602|r   62 TKYTAVA-GISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSY----PDMVALCG  136 (400)
Q Consensus        62 ~~Y~~~~-G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l~~~~~~~~~~Gd~Vlv~~P~y~~y----~~~~~~~g  136 (400)
                      .+|.-++ |.| .++++.+.+...-|    .+.-++++.+..||..++.+++++||+|++++..|..-    ...+...|
T Consensus        53 ~g~~YsR~gNP-T~~~lE~~la~LEg----g~~a~~~sSGmaAi~~~l~~ll~~Gd~vv~~~~~Yggt~~~~~~~l~~~G  127 (426)
T PRK05994         53 FGNIYTRITNP-TTAVLEERVAALEG----GTAALAVASGHAAQFLVFHTLLQPGDEFIAARKLYGGSINQFGHAFKSFG  127 (426)
T ss_pred             CCCEECCCCCH-HHHHHHHHHHHHHC----CCEEEEECCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHCC
T ss_conf             79711499886-69999999999859----97289944889999999999727899899848742689999999986088


Q ss_pred             CCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCC
Q ss_conf             22222222222322210333100012212201211354210000123333211122333332011101221100000122
Q gi|254780602|r  137 GIPVFVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQ  216 (400)
Q Consensus       137 ~~~~~v~~~~~~~~~~d~~~l~~~i~~~~k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~  216 (400)
                      .++.+++.       -|+++++++++++||+||+-+|.|||-.+.+   +++|+++| +++++.+++|..+.--.+    
T Consensus       128 i~v~~~d~-------~d~~~~~~~i~~~T~lv~~EspsNP~l~v~D---i~~ia~iA-~~~g~~~vVDNT~atP~~----  192 (426)
T PRK05994        128 WQVRWADA-------DDPASFEAAITPRTKAIFIESIANPGGTITD---IEAIAEVA-HRAGLPLIVDNTLASPYL----  192 (426)
T ss_pred             EEEEEECC-------CCHHHHHHHCCCCCEEEEEECCCCCCCCCCC---HHHHHHHH-HHCCCEEEEECCCCHHHH----
T ss_conf             69999789-------9838899736887549999878998872347---89999999-971991786356520431----


Q ss_pred             CCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCC-CCC
Q ss_conf             332221112333225741465443223445444-221
Q gi|254780602|r  217 FSNIVNVEPSLYERTLVVNGVSKAYAMTGLRIG-YAA  252 (400)
Q Consensus       217 ~~s~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG-~~v  252 (400)
                      ..++ .+  +   --|+++|.||.++--|==+| .++
T Consensus       193 ~~Pl-~~--G---aDivvhS~TKyi~GHsDvlgG~vv  223 (426)
T PRK05994        193 IRPI-EH--G---ADIVVHSLTKFLGGHGNSMGGIIV  223 (426)
T ss_pred             CCHH-HH--C---CCEEEEECCCCCCCCCCEEEEEEE
T ss_conf             5867-74--8---988999645103588763788885


No 196
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=99.62  E-value=2.4e-15  Score=113.52  Aligned_cols=324  Identities=17%  Similarity=0.205  Sum_probs=197.1

Q ss_pred             CCCCHHHHHHHHHHHHCCCCC-CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             988999999999998388756-9987789899999999864210133332233233454333322222223322322223
Q gi|254780602|r   43 FDMPENVKYAVVRAMERGETK-YTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFNALMATVNMGDEVLIP  121 (400)
Q Consensus        43 ~~~p~~i~~a~~~al~~~~~~-Y~~~~G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l~~~~~~~~~~Gd~Vlv~  121 (400)
                      .++|+.|++|+.+-    ..+ ..+  -...+-+.+.+.++.-++.+ +.+-++++..++.++..++..+++|||+||+.
T Consensus        14 ~~v~~~V~~am~~~----~~~h~s~--~F~~~~~~~~~~L~~v~~t~-~~~~~ll~gsGt~amEAav~sl~~pgdkVLv~   86 (383)
T COG0075          14 VPVPPRVLLAMARP----MVGHRSP--DFVGIMKEVLEKLRKVFGTE-NGDVVLLSGSGTLAMEAAVASLVEPGDKVLVV   86 (383)
T ss_pred             CCCCHHHHHHHCCC----CCCCCCH--HHHHHHHHHHHHHHHHHCCC-CCCEEEECCCCHHHHHHHHHHHCCCCCEEEEE
T ss_conf             88899999974577----7777798--89999999999999996688-87479976883799999998605899869998


Q ss_pred             CCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCC--CCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             333232--22222222222222222222322210333100012--21220121135421000012333321112233333
Q gi|254780602|r  122 RPYWVS--YPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQAIT--PKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNP  197 (400)
Q Consensus       122 ~P~y~~--y~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~--~~~k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~  197 (400)
                      .-+...  +..+++.+|++++.+......  .+|+++++++++  +..+++.+++---+||...+   +++|++++ +.|
T Consensus        87 ~nG~FG~R~~~ia~~~g~~v~~~~~~wg~--~v~p~~v~~~L~~~~~~~~V~~vH~ETSTGvlnp---l~~I~~~~-k~~  160 (383)
T COG0075          87 VNGKFGERFAEIAERYGAEVVVLEVEWGE--AVDPEEVEEALDKDPDIKAVAVVHNETSTGVLNP---LKEIAKAA-KEH  160 (383)
T ss_pred             ECCHHHHHHHHHHHHHCCCEEEEECCCCC--CCCHHHHHHHHHCCCCCCEEEEEECCCCCCCCCC---HHHHHHHH-HHC
T ss_conf             27807779999999829966998478888--7999999999852899508999811575201376---99999999-972


Q ss_pred             CCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCC-CCCCCCCCCCHHHHHHHHHHHCCC---------
Q ss_conf             2011101221100000122332221112333225741465443223-445444221101226875310012---------
Q gi|254780602|r  198 HVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAM-TGLRIGYAAGALSLIKSMIVLQGQ---------  267 (400)
Q Consensus       198 ~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~~-~G~RiG~~v~~~~li~~l~~~~~~---------  267 (400)
                      +.++|+|.+=+   +++.+.      ..+-+.--+.+.+--|.++. ||  +|.+..+++-++.+......         
T Consensus       161 g~l~iVDaVsS---~Gg~~~------~vd~wgiDv~itgSQK~l~~PPG--la~v~~S~~a~~~~~~~~~~~~ylDL~~~  229 (383)
T COG0075         161 GALLIVDAVSS---LGGEPL------KVDEWGIDVAITGSQKALGAPPG--LAFVAVSERALEAIEERKHPSFYLDLKKW  229 (383)
T ss_pred             CCEEEEEECCC---CCCCCC------CHHHCCCCEEEECCCHHCCCCCC--CCEEEECHHHHHHHHCCCCCCEEECHHHH
T ss_conf             98899982345---788125------44442845899767201158986--14367779999998558887602219999


Q ss_pred             ---------CCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEECCCCEEEEEECCCCCCCC
Q ss_conf             ---------22332222222222223467-64322222211000000024553047760330274089986264102332
Q gi|254780602|r  268 ---------QTSGACSIAQWAAVEALNGP-QDFVVNNRKIFEYRRDLCVAQLQGVPGIRYMIPDGAFYLYPSCQDLIGKK  337 (400)
Q Consensus       268 ---------~~~~~~~~~q~a~~~~l~~~-~~~~~~~~~~~~~~r~~~~~~L~~~~g~~~~~p~g~~y~~~~~~~~~~~~  337 (400)
                               ....++...-.+.-++|+.- ++-++...++++++.+.+.+.++.+ |++... +-+++.+    ......
T Consensus       230 ~~~~~~~~~~p~Tppv~~i~aL~~al~~i~~EGle~r~~RH~~~~~a~r~~~~al-Gl~~~~-~~~~~s~----tvta~~  303 (383)
T COG0075         230 LKYMEKKGSTPYTPPVNLIYALREALDLILEEGLEARIARHRRLAEALRAGLEAL-GLELFA-DPERRSP----TVTAIK  303 (383)
T ss_pred             HHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCCC-CCCCCCC----CEEEEE
T ss_conf             9988536898889877899999999999998657999999999999999999976-984236-8655788----548997


Q ss_pred             CCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCCCCEEEEEE-E-CCHHHHHHHHHHHHHHHHHC
Q ss_conf             11332248989999999987397998350228997289996-2-99999999999999999860
Q gi|254780602|r  338 SPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGHGPSIRISY-A-VSDAILEEACVRIKRFCHSL  399 (400)
Q Consensus       338 ~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~iRis~-~-~~~e~l~~al~rl~~~l~~l  399 (400)
                      .+  . ..++.+....+++++|+.+.+|..--....+||+. + .+.+++..++..|++.|..+
T Consensus       304 ~P--~-g~~~~~~~~~~~~~~g~~i~gg~~~l~gkifRIGhMG~~~~~dv~~~l~ale~~L~~~  364 (383)
T COG0075         304 VP--E-GVDDKKVRRALLKEYGVEIAGGQGPLKGKIFRIGHMGNVRPEDVLAALAALEAALREL  364 (383)
T ss_pred             CC--C-CCCCHHHHHHHHHHCCEEECCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHC
T ss_conf             89--8-8772999999998479996456545576189983575678899999999999999974


No 197
>PRK13034 serine hydroxymethyltransferase; Reviewed
Probab=99.61  E-value=3e-14  Score=106.82  Aligned_cols=360  Identities=16%  Similarity=0.094  Sum_probs=204.3

Q ss_pred             CHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCC-CCCCCC------CCCHHH
Q ss_conf             9367889873897589999999999998699726656589749889999999999983887-569987------789899
Q gi|254780602|r    1 MVFISNILRRVQPSATLVAAQRVRDLRSKGIDVLCLTAGEPDFDMPENVKYAVVRAMERGE-TKYTAV------AGISPL   73 (400)
Q Consensus         1 m~~~s~~~~~l~~s~~~~~~~~~~~~~~~g~~ii~l~~G~p~~~~p~~i~~a~~~al~~~~-~~Y~~~------~G~~~l   73 (400)
                      |++.++-++...|. ++.+.++-.+.++.+   |+|=..+. + +++.+++++-..+.+.. -|||.-      .-..++
T Consensus         5 ~~~~~~~l~~~Dpe-i~~~i~~E~~RQ~~~---l~LIASEN-~-~S~~v~~a~gS~ltnkYaEGyPg~RyY~G~~~iD~i   78 (422)
T PRK13034          5 MFFFSDQLAERDDA-VRAAILAELQRQQDQ---IELIASEN-I-VSKAVLQAQGSVLTNKYAEGYPGKRYYGGCEHVDEV   78 (422)
T ss_pred             HHHHCCCHHHCCHH-HHHHHHHHHHHHHCC---CEEECCCC-C-CCHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHH
T ss_conf             32202505340999-999999999999759---54860577-5-899999985662126466889986554775369999


Q ss_pred             HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---CCCCCCC--CCCCCCCCCCCC
Q ss_conf             99999986421013333223323345433332222222332232222333323222---2222222--222222222223
Q gi|254780602|r   74 REAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYP---DMVALCG--GIPVFVDTQQDD  148 (400)
Q Consensus        74 R~aia~~~~~~~g~~~~~e~I~it~G~~~~l~~~~~~~~~~Gd~Vlv~~P~y~~y~---~~~~~~g--~~~~~v~~~~~~  148 (400)
                      -+...++.++.||.+  --||=..+|+ +|...++.++++|||+|+..+..-..|.   ......|  .+.+++++++++
T Consensus        79 E~la~~rak~LF~a~--~anVqp~SGs-~AN~av~~all~PGD~im~l~l~~GGHltHG~~~~~sg~~~~~~~Y~vd~~~  155 (422)
T PRK13034         79 EALAIERAKQLFGAD--YANVQPHSGS-QANGAVYLALLKPGDTILGMSLDAGGHLTHGAKVALSGKWFNAVQYGVDRDT  155 (422)
T ss_pred             HHHHHHHHHHHHCCC--CCCCCCCCHH-HHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCC
T ss_conf             999999999984999--6354778619-9999999996489986884367777625578875534560478982175323


Q ss_pred             CCCCHHHHHHCCC-CCCCCCEEECCCCCCCCCCCCCC-CCCCCCCCCCCCCCCEEECCCCCC-CCCCCCCCCCCCCCCCC
Q ss_conf             2221033310001-22122012113542100001233-332111223333320111012211-00000122332221112
Q gi|254780602|r  149 NFQVSPEKLEQAI-TPKTKWLFLNSPSNPSGVVYSQN-RLRALADVLVRNPHVHIISDDIYE-HIVYRNCQFSNIVNVEP  225 (400)
Q Consensus       149 ~~~~d~~~l~~~i-~~~~k~i~l~nP~NPTG~v~s~~-~l~~i~~~~a~~~~i~ii~De~Y~-~l~~~~~~~~s~~~~~~  225 (400)
                      + .+|.|++++.. ..|+|+|++-      ++.|++. +++++.++| ++.+.+++.|-+|- .|+-.+ .+++..... 
T Consensus       156 ~-~IDyd~l~~~a~~~kPklIi~G------~Say~r~id~k~~reIA-d~vGA~l~~D~AHiaGLIA~g-~~psP~~~A-  225 (422)
T PRK13034        156 G-LIDYDQVERLAVEHKPKLIIAG------FSAYPRTLDFARFRAIA-DSVGAILMVDMAHIAGLVAAG-RHPNPVPHA-  225 (422)
T ss_pred             C-CCCHHHHHHHHHHCCCCEEEEC------CCCCCCCCCHHHHHHHH-HHHCCEEEECHHHHHHHHCCC-CCCCCCCCC-
T ss_conf             8-2279999999873199869966------61244212889999999-872977981156554541033-369987775-


Q ss_pred             CCCCEEEEECCCCCCCCCCCCCCCCCCCH-HHHHHHHHHHCCCCCCCCCCCCCCCCC-CCCCC-CCCCCCCCCCCCCCCC
Q ss_conf             33322574146544322344544422110-122687531001222332222222222-22346-7643222222110000
Q gi|254780602|r  226 SLYERTLVVNGVSKAYAMTGLRIGYAAGA-LSLIKSMIVLQGQQTSGACSIAQWAAV-EALNG-PQDFVVNNRKIFEYRR  302 (400)
Q Consensus       226 ~~~~~~i~~~S~SK~~~~~G~RiG~~v~~-~~li~~l~~~~~~~~~~~~~~~q~a~~-~~l~~-~~~~~~~~~~~~~~~r  302 (400)
                           -++..|..|++  +|-|-|.+..+ +++.+++.+..--...+.+...+.++. .+|.+ .+.-+.+-.+...+|.
T Consensus       226 -----DvvT~TTHKTL--rGPrGGiIl~~~~el~~kId~avFPg~qggp~~h~iAa~Ava~~Ea~~~~f~~Ya~qVv~NA  298 (422)
T PRK13034        226 -----HVVTTTTHKTL--RGPRGGMILTNDEEIAKKINSAVFPGLQGGPLMHVIAAKAVAFGEALEPGFKTYIDQVIANA  298 (422)
T ss_pred             -----EEEECCCCCCC--CCCCCCEEECCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf             -----28867751477--89884357526699999864333886456715778999999999966876999999999999


Q ss_pred             CCHHHHHHCCCCCEEEECCC--CEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECC-CCCCC-----CCEE
Q ss_conf             00024553047760330274--0899862641023321133224898999999998739799835-02289-----9728
Q gi|254780602|r  303 DLCVAQLQGVPGIRYMIPDG--AFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQG-SSFGH-----GPSI  374 (400)
Q Consensus       303 ~~~~~~L~~~~g~~~~~p~g--~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG-~~Fg~-----~~~i  374 (400)
                      +.+.+.|.+. |+++.. .|  +-.+++|+...          ..+.. -++..|++.||.+.-- -.|.+     +..|
T Consensus       299 kaLa~~L~~~-G~~vv~-ggTdnHlvlvDl~~~----------gi~G~-~a~~~L~~~gI~~Nkn~iP~D~~~p~~~sGi  365 (422)
T PRK13034        299 QALAEVLKAR-GYDLVT-GGTDNHLLLVDLRPK----------GLTGK-QAEQALERAGITVNKNGIPFDPEKPFVTSGI  365 (422)
T ss_pred             HHHHHHHHHC-CCEECC-CCCCCCEEEEECCCC----------CCCHH-HHHHHHHHCCEEECCCCCCCCCCCCCCCCCE
T ss_conf             9999999978-980457-999876366535656----------77569-9999999839586678688999899889812


Q ss_pred             EEEEE------CCHHHHHHHHHHHHHHHHHC
Q ss_conf             99962------99999999999999999860
Q gi|254780602|r  375 RISYA------VSDAILEEACVRIKRFCHSL  399 (400)
Q Consensus       375 Ris~~------~~~e~l~~al~rl~~~l~~l  399 (400)
                      ||.-.      -.++++++..+-|.+.|+.+
T Consensus       366 RiGt~a~TtRG~~e~em~~ia~~I~~vl~~~  396 (422)
T PRK13034        366 RIGTPAGTTRGFGAAEFREIAGWILDVLDAL  396 (422)
T ss_pred             EECCHHHHHCCCCHHHHHHHHHHHHHHHHHC
T ss_conf             6677889838998899999999999999734


No 198
>TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase. This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level HMM (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different.
Probab=99.60  E-value=6.7e-15  Score=110.82  Aligned_cols=319  Identities=13%  Similarity=0.128  Sum_probs=184.5

Q ss_pred             CCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             98899999999999838875699877898999999998642101333322332334543333222222233223222233
Q gi|254780602|r   43 FDMPENVKYAVVRAMERGETKYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFNALMATVNMGDEVLIPR  122 (400)
Q Consensus        43 ~~~p~~i~~a~~~al~~~~~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l~~~~~~~~~~Gd~Vlv~~  122 (400)
                      .+.|+.|++|+..    .. +. -+.-..++-+.+.+.+++.++.+=+.+-++++.|++.++..++..++.+||+|++..
T Consensus         8 ~~v~~~V~~am~~----~~-~H-Rs~~F~~i~~~~~~~L~~l~~~~~~~~v~~l~gsGt~a~Ea~~~nl~~~g~~vlv~~   81 (355)
T TIGR03301         8 LSTSATVRDAMLV----DW-CH-WDSEFNDVTDQVRDRLLALAGGDDNHTCVLLQGSGTFAVEATIGSLVPRDGKLLVLI   81 (355)
T ss_pred             CCCCHHHHHHHCC----CC-CC-CCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHCCCCCCEEEEEE
T ss_conf             9999999997187----77-88-988999999999998999958999847999916559999999985236798799995


Q ss_pred             CCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCC--CCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             3323--22222222222222222222232221033310001221--2201211354210000123333211122333332
Q gi|254780602|r  123 PYWV--SYPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQAITPK--TKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPH  198 (400)
Q Consensus       123 P~y~--~y~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~--~k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~  198 (400)
                      =+..  -+...++.+|..++.+......  .+|++++++.+..+  .+++.+++-.-.||...+   +++|.++| ++++
T Consensus        82 ~G~fg~r~~~~a~~~g~~~~~~~~~~g~--~~~~~~v~~~l~~~~~~~~v~~~h~ETstGv~~~---~~~i~~~~-~~~~  155 (355)
T TIGR03301        82 NGAYGERLAKICEYLGIPHTDLNFSEYE--PPDLNRIEEALAADPDITHVATVHHETTTGILNP---LEAIAKVA-RSHG  155 (355)
T ss_pred             CCHHHHHHHHHHHHHCCCEEEEECCCCC--CCCHHHHHHHHHCCCCCCEEEEEEECCCCCCCCC---HHHHHHHH-CCCC
T ss_conf             4889999999999829966997368877--8998999999725778548999501267874175---37665665-0479


Q ss_pred             CEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCC-CCCCCCCCCCCCHHHHHHHHHHH-CC----------
Q ss_conf             0111012211000001223322211123332257414654432-23445444221101226875310-01----------
Q gi|254780602|r  199 VHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAY-AMTGLRIGYAAGALSLIKSMIVL-QG----------  266 (400)
Q Consensus       199 i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~-~~~G~RiG~~v~~~~li~~l~~~-~~----------  266 (400)
                      .++|+|-+-+ +  .+.+      ++-+.++-.+.+.+--|.+ +.||  +|+++.+++.+++...- .+          
T Consensus       156 ~llvVDavSs-~--g~~p------~d~~~~gvD~~~~~sQK~l~~ppG--l~~v~~~~~~~~~~~~~~~~~y~dl~~~~~  224 (355)
T TIGR03301       156 AVLIVDAMSS-F--GAIP------IDIEELDVDALIASANKCLEGVPG--FGFVIARRDLLEASAGNARSLYLDLYDQWA  224 (355)
T ss_pred             CEEEEECCCC-C--CCCC------CCCCCCCEEEEEECCCCCCCCCCC--EEEEEECHHHHHHCCCCCCCCCCCHHHHHH
T ss_conf             6499974564-3--5686------420115658999536555678887--578886699997513798766635899998


Q ss_pred             ------CCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEECCCC---EEEEEECCCCCC
Q ss_conf             ------222332222222222223467--643222222110000000245530477603302740---899862641023
Q gi|254780602|r  267 ------QQTSGACSIAQWAAVEALNGP--QDFVVNNRKIFEYRRDLCVAQLQGVPGIRYMIPDGA---FYLYPSCQDLIG  335 (400)
Q Consensus       267 ------~~~~~~~~~~q~a~~~~l~~~--~~~~~~~~~~~~~~r~~~~~~L~~~~g~~~~~p~g~---~y~~~~~~~~~~  335 (400)
                            .+...++...-.++.++|+.-  +..++...+++++..+.+++.++++ |++...+++.   .-.-+.+++   
T Consensus       225 ~~~~~g~~~~Tppv~~i~al~~al~~i~~eGGl~~~~~r~~~~a~~l~~~l~~l-gl~~~~~~~~~s~~vt~~~~p~---  300 (355)
T TIGR03301       225 YMEKTGKWRFTPPTHTVYAFAQALEELEAEGGVPARIARYRRNRELLVDGLRAL-GFQPLLPERWQSPIIVSFLYPD---  300 (355)
T ss_pred             HHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC-CCCCCCCHHHCCCCEEEEECCC---
T ss_conf             863479878788549999999999999972379999999999999999999986-9943589156498669998899---


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCCCCEEEEEE-E-CCHHHHHHHHHHHHHHH
Q ss_conf             3211332248989999999987397998350228997289996-2-99999999999999999
Q gi|254780602|r  336 KKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGHGPSIRISY-A-VSDAILEEACVRIKRFC  396 (400)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~iRis~-~-~~~e~l~~al~rl~~~l  396 (400)
                            ....+..+|...| ++.|+.+.+|..-. .+.+||+. + .+.++++..++.|++.|
T Consensus       301 ------~~~~d~~~~~~~l-~~~g~~i~~G~~~~-~~~fRig~mG~~~~~dv~~ll~~le~~L  355 (355)
T TIGR03301       301 ------DPDFDFDDFYQEL-KERGFVIYPGKLTL-ADTFRIGTIGEIDAADIERLLEAIKDAL  355 (355)
T ss_pred             ------CCCCCHHHHHHHH-HHCCEEEECCCCCC-CCEEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf             ------8885799999999-97790785787677-9989898189999999999999999769


No 199
>PRK04073 rocD ornithine--oxo-acid transaminase; Provisional
Probab=99.58  E-value=6.1e-14  Score=104.98  Aligned_cols=333  Identities=17%  Similarity=0.138  Sum_probs=183.1

Q ss_pred             CCCCEEECCCCCC--CCC-CCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             6997266565897--498-8999999999998388756998778989999999986421013333223323345433332
Q gi|254780602|r   29 KGIDVLCLTAGEP--DFD-MPENVKYAVVRAMERGETKYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIF  105 (400)
Q Consensus        29 ~g~~ii~l~~G~p--~~~-~p~~i~~a~~~al~~~~~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l~  105 (400)
                      +|+..+|+..|--  .+. -+|.|.+|+++.++...+  ....-..+.+...++.+.+..    ..+.++++++++++..
T Consensus        38 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~--~~~~~~~~~~~~~~e~l~~l~----~~~~v~f~~sGseAvE  111 (396)
T PRK04073         38 EGNKYMDMLSAYSAVNQGHRHPKIIQALKDQADKVTL--TSRAFHSDQLGPWYEKVAKLT----GKDMVLPMNTGAEAVE  111 (396)
T ss_pred             CCCEEEEECCCHHHHHCCCCCHHHHHHHHHHHHHCCC--CCCCCCCHHHHHHHHHHHHHC----CCCEEEECCCHHHHHH
T ss_conf             8999999451788763037979999999999841787--665324347899999999752----8364896187888999


Q ss_pred             CCCCCCC---------CCC-CCCCCCCCCCCCCCCCC-CCCC---CCCCCCCCCCCCCC--CCHHHHHHCCCCCCCCCEE
Q ss_conf             2222223---------322-32222333323222222-2222---22222222222322--2103331000122122012
Q gi|254780602|r  106 NALMATV---------NMG-DEVLIPRPYWVSYPDMV-ALCG---GIPVFVDTQQDDNF--QVSPEKLEQAITPKTKWLF  169 (400)
Q Consensus       106 ~~~~~~~---------~~G-d~Vlv~~P~y~~y~~~~-~~~g---~~~~~v~~~~~~~~--~~d~~~l~~~i~~~~k~i~  169 (400)
                      .++...-         .+| .+|+...-+|-...... ...+   .+--+-|..+...+  ..|++.+++.+.+++-+++
T Consensus       112 ~AlklAr~~~~~~~~~~~~r~~ii~~~~~yHG~t~~~~s~t~~~~~~~~~~p~~~~~~~~p~~d~~~l~~~~~~~~AAvi  191 (396)
T PRK04073        112 TAIKAARRWAYDVKGVEPNKAEIIACEGNFHGRTMAAVSLSSEAEYKRGFGPMLPGIKKIPYGDVEALKAAITPNTAAFL  191 (396)
T ss_pred             HHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCEECCCCHHHHHHHHCCCCEEEEE
T ss_conf             99999999987623788898779997775004532052226764334577899998232575216678861489756999


Q ss_pred             ECCC-CCCCCCCC-CCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCC-CCCCCCCCCCEEEEECCCCCCCCCCC-
Q ss_conf             1135-42100001-23333211122333332011101221100000122332-22111233322574146544322344-
Q gi|254780602|r  170 LNSP-SNPSGVVY-SQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSN-IVNVEPSLYERTLVVNGVSKAYAMTG-  245 (400)
Q Consensus       170 l~nP-~NPTG~v~-s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s-~~~~~~~~~~~~i~~~S~SK~~~~~G-  245 (400)
                      +- | +...|.+. +++.++++.++| +++|+++|.||+...|.=.|.-+.. ...+.|+     |+  +++|..+ .| 
T Consensus       192 ~E-Pi~g~gG~~~p~~~yl~~lr~lc-~~~gillI~DEV~tGfGRtG~~fa~e~~gv~PD-----iv--~~gK~l~-gG~  261 (396)
T PRK04073        192 VE-PIQGEAGINIPPEGFLKAARELC-KEENVLFIADEIQTGLGRTGKLFACDWDNVKPD-----MY--ILGKALG-GGV  261 (396)
T ss_pred             EE-CCCCCCCCCCCCHHHHHHHHHHH-HHHCCEEECCCCEECCCCCCCCCCEECCCCCCC-----EE--ECCCCCC-CCC
T ss_conf             98-98777897789989999999999-983993526634107886576300100468988-----01--0253455-787


Q ss_pred             CCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEECCC-CE
Q ss_conf             54442211012268753100122233222222222222346764322222211000000024553047760330274-08
Q gi|254780602|r  246 LRIGYAAGALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQGVPGIRYMIPDG-AF  324 (400)
Q Consensus       246 ~RiG~~v~~~~li~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~~~~~L~~~~g~~~~~p~g-~~  324 (400)
                      +-+|.+++++++.+.+..-....+.+.+.+...++.+.|+.-++  +...+..++.-+++.+.|+++..=.+....| |+
T Consensus       262 ~P~~av~~~~~i~~~~~~~~h~~T~~gnpla~aaa~a~L~~~~~--~~l~~~~~~~g~~l~~~L~~l~~~~i~~vRG~Gl  339 (396)
T PRK04073        262 FPISCVAANRDILGVFTPGSHGSTFGGNPLACAVSIAALDVIEE--EKLPERSLELGEYFKEQLKEIDNPMIKEVRGRGL  339 (396)
T ss_pred             CCEEEEECCHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHHHCCCCCEEECCCCEE
T ss_conf             76058960789996166899760548898999999999999987--5799999999999999998258997487233779


Q ss_pred             EEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCCCCEEEEE--EECCHHHHHHHHHHHHHHHH
Q ss_conf             99862641023321133224898999999998739799835022899728999--62999999999999999998
Q gi|254780602|r  325 YLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGHGPSIRIS--YAVSDAILEEACVRIKRFCH  397 (400)
Q Consensus       325 y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~iRis--~~~~~e~l~~al~rl~~~l~  397 (400)
                      ++=+++.+             ....++.++ .+.|+++.+.    .++-||++  +..+++++++++++|++.|.
T Consensus       340 ~~giel~~-------------~~~~~~~~~-~~~Gll~~~~----~~~~ir~~PpL~it~~eid~~l~~l~~~L~  396 (396)
T PRK04073        340 FIGVELNE-------------PARPYCEAL-KEEGLLCKET----HETVIRFAPPLVISKEELDWALEKIKAVLS  396 (396)
T ss_pred             EEEEEECC-------------CHHHHHHHH-HHCCEEEEEC----CCCEEEEECCCCCCHHHHHHHHHHHHHHHC
T ss_conf             99999587-------------589999999-9499799527----999899979936899999999999999859


No 200
>PRK00011 glyA serine hydroxymethyltransferase; Reviewed
Probab=99.58  E-value=9.6e-14  Score=103.76  Aligned_cols=343  Identities=15%  Similarity=0.091  Sum_probs=196.1

Q ss_pred             HHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCC-CCCCCC---CCC---HHHHHHHHHHHHHHCCCC
Q ss_conf             9999999999998699726656589749889999999999983887-569987---789---899999999864210133
Q gi|254780602|r   16 TLVAAQRVRDLRSKGIDVLCLTAGEPDFDMPENVKYAVVRAMERGE-TKYTAV---AGI---SPLREAIVEKFRRDNDLH   88 (400)
Q Consensus        16 ~~~~~~~~~~~~~~g~~ii~l~~G~p~~~~p~~i~~a~~~al~~~~-~~Y~~~---~G~---~~lR~aia~~~~~~~g~~   88 (400)
                      +..+.++-.+.++.+   |+|=..+.  -+++.+++++...+.+.. -|||.-   .|.   .++-+...++.++.||.+
T Consensus        13 i~~~i~~E~~rq~~~---l~LIaSEN--~~S~~v~~a~gS~l~nkYaEG~pg~RyY~G~~~iD~iE~la~~ra~~lF~a~   87 (415)
T PRK00011         13 IFEAIEKELKRQEEH---IELIASEN--FVSPAVMEAQGSVLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKKLFGAE   87 (415)
T ss_pred             HHHHHHHHHHHHHCC---CEEECCCC--CCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC
T ss_conf             999999999999829---64853777--4799999986472227577889984245665269999999999999983898


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-----CCCCCCCCCCCCCCCCCCCCCCHHHHHHCCC-C
Q ss_conf             332233233454333322222223322322223333232222-----2222222222222222232221033310001-2
Q gi|254780602|r   89 YTSDQIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPD-----MVALCGGIPVFVDTQQDDNFQVSPEKLEQAI-T  162 (400)
Q Consensus        89 ~~~e~I~it~G~~~~l~~~~~~~~~~Gd~Vlv~~P~y~~y~~-----~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i-~  162 (400)
                      .  -||=..+|+ .|...++.++++|||+|+..+..-..|.+     .+...+.+.++++++++++ .+|.|++++.. .
T Consensus        88 ~--anVqp~SGs-~AN~av~~all~PGD~im~l~l~~GGHltHg~~~~~~~~~~~~~~y~~d~~~~-~IDyd~~~~~a~~  163 (415)
T PRK00011         88 Y--ANVQPHSGS-QANAAVYFALLKPGDTILGMDLAHGGHLTHGSPVNFSGKLYNVVSYGVDEETG-LIDYDEVEKLALE  163 (415)
T ss_pred             C--CCCCCCCHH-HHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCC-CCCHHHHHHHHHH
T ss_conf             6--056778639-99999999962789858766866678765786755446524789867864348-1679999999986


Q ss_pred             CCCCCEEECCCCCCCCCCCCCC-CCCCCCCCCCCCCCCEEECCCCCC-CCCCCCCCCCCCCCCCCCCCCEEEEECCCCCC
Q ss_conf             2122012113542100001233-332111223333320111012211-00000122332221112333225741465443
Q gi|254780602|r  163 PKTKWLFLNSPSNPSGVVYSQN-RLRALADVLVRNPHVHIISDDIYE-HIVYRNCQFSNIVNVEPSLYERTLVVNGVSKA  240 (400)
Q Consensus       163 ~~~k~i~l~nP~NPTG~v~s~~-~l~~i~~~~a~~~~i~ii~De~Y~-~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~  240 (400)
                      .|+|+|++-      ++.|++. +++++.++| ++.+.+++.|-+|- .|+-.+ .+++...   .+   -++.+|.-|+
T Consensus       164 ~kPklIi~G------~S~y~r~~d~~~~reIa-d~vgA~l~~D~aHi~GLIA~g-~~~~Pl~---~A---Dvvt~tTHKT  229 (415)
T PRK00011        164 HKPKLIIAG------ASAYSRPIDFKKFREIA-DEVGAYLMVDMAHIAGLVAAG-VHPNPVP---HA---DVVTTTTHKT  229 (415)
T ss_pred             HCCCEEEEC------CCCCCCCCCHHHHHHHH-HHHCCEEEEEHHHHHHHHHCC-CCCCCCC---CC---EEEECCCCCC
T ss_conf             099889964------61353312889999999-970988994535566666433-3799667---75---6885453346


Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCC-CCCC-CCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEE
Q ss_conf             223445444221101226875310012223322222222222-2346-76432222221100000002455304776033
Q gi|254780602|r  241 YAMTGLRIGYAAGALSLIKSMIVLQGQQTSGACSIAQWAAVE-ALNG-PQDFVVNNRKIFEYRRDLCVAQLQGVPGIRYM  318 (400)
Q Consensus       241 ~~~~G~RiG~~v~~~~li~~l~~~~~~~~~~~~~~~q~a~~~-~l~~-~~~~~~~~~~~~~~~r~~~~~~L~~~~g~~~~  318 (400)
                      |  +|-|-|.+..++++.+++.+..--...+.+...+.|+.+ +|.+ .+..+.+-.+...+|.+.+.+.|.+. |+++.
T Consensus       230 l--rGPrGGiIl~~~e~~~kId~aVFPg~qggph~h~iAa~Aval~Ea~~~~f~~Ya~qVv~NAk~La~~L~~~-G~~vv  306 (415)
T PRK00011        230 L--RGPRGGLILTNEELAKKINSAVFPGIQGGPLMHVIAAKAVAFKEALEPEFKEYAQQVVKNAKALAEALQER-GFKVV  306 (415)
T ss_pred             C--CCCCCEEEEECCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHC-CCEEE
T ss_conf             7--89886079734066666541207531468047789999999999847418999999999999999999768-97797


Q ss_pred             ECCC--CEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEE----CCC---CCCCCCEEEEEEE------CCHH
Q ss_conf             0274--08998626410233211332248989999999987397998----350---2289972899962------9999
Q gi|254780602|r  319 IPDG--AFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVV----QGS---SFGHGPSIRISYA------VSDA  383 (400)
Q Consensus       319 ~p~g--~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~----pG~---~Fg~~~~iRis~~------~~~e  383 (400)
                      . .|  +-.+++|+...          ..+.. -+++.|++.||.+.    |+.   .|. +..|||.-.      -.++
T Consensus       307 ~-ggTdnHlvlvdl~~~----------g~~G~-~a~~~Le~~gI~vNkn~iP~d~~~~~~-~SGiRiGt~a~TtrG~~e~  373 (415)
T PRK00011        307 S-GGTDNHLVLVDLRKK----------GLTGK-DAEAALEEANITVNKNAIPFDPRSPFV-TSGIRIGTPAITTRGFKEA  373 (415)
T ss_pred             E-CCCCCCEEEEECCCC----------CCCHH-HHHHHHHHCCEEECCCCCCCCCCCCCC-CCCEEECCHHHHHCCCCHH
T ss_conf             1-798774477645645----------68899-999999985908755879899999888-8601436788974899889


Q ss_pred             HHHHHHHHHHHHHH
Q ss_conf             99999999999998
Q gi|254780602|r  384 ILEEACVRIKRFCH  397 (400)
Q Consensus       384 ~l~~al~rl~~~l~  397 (400)
                      ++++..+-|.+.+.
T Consensus       374 em~~ia~~I~~~l~  387 (415)
T PRK00011        374 EMEEIAELIADVLD  387 (415)
T ss_pred             HHHHHHHHHHHHHH
T ss_conf             99999999999983


No 201
>PRK07269 cystathionine gamma-synthase; Reviewed
Probab=99.58  E-value=1.2e-14  Score=109.30  Aligned_cols=231  Identities=15%  Similarity=0.207  Sum_probs=138.6

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----CCCCC
Q ss_conf             69987789899999999864210133332233233454333322222223322322223333232222222----22222
Q gi|254780602|r   63 KYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDMVA----LCGGI  138 (400)
Q Consensus        63 ~Y~~~~G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l~~~~~~~~~~Gd~Vlv~~P~y~~y~~~~~----~~g~~  138 (400)
                      -|+- .|.| .++++.+.+...-|    .+.-++++.+..||..++ .++.+||+|+++.+.|..-...+.    ..|..
T Consensus        47 ~Y~R-~~nP-T~~~le~~la~LE~----~~~a~~~sSGmaAi~~~l-~~l~~Gd~vv~~~~~Yg~t~~~~~~~~~~~~~~  119 (364)
T PRK07269         47 DYTR-TKNP-TRATLEETLAAIES----ADYALATSSGMSAIVLAF-SGFPVGSKVVAVRDLYGGSFRWFNQQEKEGRFH  119 (364)
T ss_pred             CCCC-CCCH-HHHHHHHHHHHHHC----CCCEEECCCHHHHHHHHH-HHHCCCCEEEECCCEECHHHHHHHHHHHCCEEE
T ss_conf             3518-9886-38999999999849----974453276899999999-983689808970460737999999887438389


Q ss_pred             CCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC
Q ss_conf             22222222232221033310001221220121135421000012333321112233333201110122110000012233
Q gi|254780602|r  139 PVFVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFS  218 (400)
Q Consensus       139 ~~~v~~~~~~~~~~d~~~l~~~i~~~~k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~  218 (400)
                      ..+         .-+.++++++++++||+||+=+|.|||-.+.+   +++|+++| +++++.+++|..+.--.+    +.
T Consensus       120 ~~~---------~~~~~~~~~~i~~~Tklv~~EspsNP~l~v~D---i~~i~~iA-~~~g~~~vvDNT~atP~~----~~  182 (364)
T PRK07269        120 FTY---------ANTEEELIAAIEEDTDIVYIETPTNPLMVEFD---IEKVAQLA-HAKGAKVIVDNTFYSPIY----QR  182 (364)
T ss_pred             EEE---------CCCHHHHHHHCCCCCEEEEEECCCCCCCCCCC---HHHHHHHH-HHCCCEEEEECCCCCCCC----CC
T ss_conf             996---------89859999744878539999889997776247---79999988-756985999788643202----67


Q ss_pred             CCCCCCCCCCCEEEEECCCCCCCCCCC-CCCCCCCC-HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             222111233322574146544322344-54442211-0122687531001222332222222222223467643222222
Q gi|254780602|r  219 NIVNVEPSLYERTLVVNGVSKAYAMTG-LRIGYAAG-ALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGPQDFVVNNRK  296 (400)
Q Consensus       219 s~~~~~~~~~~~~i~~~S~SK~~~~~G-~RiG~~v~-~~~li~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~  296 (400)
                      ++ .+  +   --|++.|.||.++--| .=.|.+++ ++++.+++...+.....++++...+.+...|+.    +.-..+
T Consensus       183 Pl-~~--G---aDivihS~TKYl~GHsDvl~G~vv~~~~~~~~~l~~~~~~~G~~~sP~~a~l~~RGL~T----L~lR~~  252 (364)
T PRK07269        183 PL-ED--G---ADIVLHSATKYLSGHNDVLAGVVVTNDLELYDKLFYNLNTTGAVLSPFDSYLLMRGLKT----LSLRME  252 (364)
T ss_pred             CC-CC--C---CCEEEEECCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCC----HHHHHH
T ss_conf             32-35--8---61899835500148887401689459889999999999854887894777888637773----999999


Q ss_pred             CCCCCCCCHHHHHHCCCCCE-EEECC-CCEEEE
Q ss_conf             11000000024553047760-33027-408998
Q gi|254780602|r  297 IFEYRRDLCVAQLQGVPGIR-YMIPD-GAFYLY  327 (400)
Q Consensus       297 ~~~~~r~~~~~~L~~~~g~~-~~~p~-g~~y~~  327 (400)
                      +-.++...+.+.|++.|.++ +.-|- ||++-|
T Consensus       253 ~~~~nA~~lA~~L~~hp~V~~V~yPGlgg~~sf  285 (364)
T PRK07269        253 RSTANAQEVVAFLKKSPAVKEVLYTGKGGMISF  285 (364)
T ss_pred             HHHHHHHHHHHHHHHCCCEEEEECCCCCCEEEE
T ss_conf             999999999999975998349977997726799


No 202
>PRK07480 putative aminotransferase; Validated
Probab=99.57  E-value=1.1e-13  Score=103.40  Aligned_cols=345  Identities=13%  Similarity=0.089  Sum_probs=176.3

Q ss_pred             CCCCEEECCCCC--CCCC-CCHHHHHHHHHHHHCCCCCCCCC-CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf             699726656589--7498-89999999999983887569987-7898999999998642101333322332334543333
Q gi|254780602|r   29 KGIDVLCLTAGE--PDFD-MPENVKYAVVRAMERGETKYTAV-AGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVI  104 (400)
Q Consensus        29 ~g~~ii~l~~G~--p~~~-~p~~i~~a~~~al~~~~~~Y~~~-~G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l  104 (400)
                      .|+..||+..|.  .++. -+|.|.+|+++.+++-. .|... ...-+.+..+|+.+.....  -.-++|++++++++|+
T Consensus        51 dG~~ylD~~sg~~~~~lGh~~p~v~~Ai~~q~~~l~-~~~~~~~~~~~~~~~lAe~L~~~~p--~~l~~v~f~~SGsEA~  127 (459)
T PRK07480         51 EGNKILDGMAGLWCVNVGYGRKELADAAYRQMRELP-YYNTFFKTTHPPVIELAAKLAEVAP--AGFNHVFFTNSGSEAN  127 (459)
T ss_pred             CCCEEEECCCCHHHCCCCCCCHHHHHHHHHHHHHCC-CCCCCCCCCCHHHHHHHHHHHHHCC--CCCCEEEEECCHHHHH
T ss_conf             999999876248745168899999999999997557-7025545578899999999998488--8758799708758999


Q ss_pred             CCCCCCCC-------CCCC-CCCCCCCCCCCCCC-CCCCCC--------------CCCCCCCCCCCCCCCCH--------
Q ss_conf             22222223-------3223-22223333232222-222222--------------22222222222322210--------
Q gi|254780602|r  105 FNALMATV-------NMGD-EVLIPRPYWVSYPD-MVALCG--------------GIPVFVDTQQDDNFQVS--------  153 (400)
Q Consensus       105 ~~~~~~~~-------~~Gd-~Vlv~~P~y~~y~~-~~~~~g--------------~~~~~v~~~~~~~~~~d--------  153 (400)
                      ..++...-       .++. .|+...-+|-.... .....|              ...+..|......+..+        
T Consensus       128 E~AiKlAr~y~~~~g~~~r~~ii~~~~syHG~T~ga~s~sg~~~~~~~~~~~~~~~~~v~~P~~~~~~~~~~~~~~~~~~  207 (459)
T PRK07480        128 DTVLRMVRHYWALKGKPQKKVVISRKNGYHGSTVAGASLGGMKYMHEQGDLPIPGIVHIDQPYWFGEGGDMTPEEFGLAA  207 (459)
T ss_pred             HHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCHHHHHHHH
T ss_conf             99999999999970999870899945864664066666338843234568888885664798743346789867878999


Q ss_pred             HHHHHCCCC----CCCCCEEECCC-CCCCCC-CCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCC-CCCCCCC
Q ss_conf             333100012----21220121135-421000-0123333211122333332011101221100000122332-2211123
Q gi|254780602|r  154 PEKLEQAIT----PKTKWLFLNSP-SNPSGV-VYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSN-IVNVEPS  226 (400)
Q Consensus       154 ~~~l~~~i~----~~~k~i~l~nP-~NPTG~-v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s-~~~~~~~  226 (400)
                      .+++++.+.    +++-+|+ .-| +.-.|. +.+++-+++|.++| +++|+++|.||++..+.=.|.-+.. -..+.|+
T Consensus       208 ~~~le~~i~e~~~~~iAavi-~EPi~g~gG~~~~p~~yl~~lr~lc-~~~giLlI~DEV~tGfGRTG~~fa~e~~gv~PD  285 (459)
T PRK07480        208 ARQLEAKILELGAENVAAFI-GEPIQGAGGVIIPPSTYWPEIQRIC-RKYDILLVADEVICGFGRTGEWFGHQHFGFEPD  285 (459)
T ss_pred             HHHHHHHHHHHCCCCEEEEE-ECCCCCCCCCCCCCHHHHHHHHHHH-HHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             99999999850887657876-2552466884228889999999988-643977999735328875545423567798886


Q ss_pred             CCCEEEEECCCCCCCCCCC-CCCCCCCCHHHHHHHHHHH----CCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCC
Q ss_conf             3322574146544322344-5444221101226875310----01222332222222222223467--643222222110
Q gi|254780602|r  227 LYERTLVVNGVSKAYAMTG-LRIGYAAGALSLIKSMIVL----QGQQTSGACSIAQWAAVEALNGP--QDFVVNNRKIFE  299 (400)
Q Consensus       227 ~~~~~i~~~S~SK~~~~~G-~RiG~~v~~~~li~~l~~~----~~~~~~~~~~~~q~a~~~~l~~~--~~~~~~~~~~~~  299 (400)
                           |++  ++|.++ .| +-+|.+++.+++.+.+..-    ....+.+.+.+...++++.|+.-  +..+++.++.. 
T Consensus       286 -----ii~--~gKglg-gG~~Pl~av~~~~~i~~~~~~~~~~~~hg~T~~Gnplacaaala~L~~i~~~~l~~~~~~~~-  356 (459)
T PRK07480        286 -----LMT--IAKGLT-SGYIPMGAVIVGDRVAEVLIEEGGEFNHGFTYSGHPVAAAVALANLRILRDEGIVERVRTDT-  356 (459)
T ss_pred             -----EEE--ECCCCC-CCCCCCEEEEECHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHH-
T ss_conf             -----898--752002-89877369987389998761178754247789999799999999999986162999999999-


Q ss_pred             CCCCCHHHH---HHCCCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCHHH---HHHHHHHHCCEEEECCCCCCCCCE
Q ss_conf             000000245---53047760330274089986264102332113322489899---999999873979983502289972
Q gi|254780602|r  300 YRRDLCVAQ---LQGVPGIRYMIPDGAFYLYPSCQDLIGKKSPSGDVIRTDLD---FVNGLLEIEKVAVVQGSSFGHGPS  373 (400)
Q Consensus       300 ~~r~~~~~~---L~~~~g~~~~~p~g~~y~~~~~~~~~~~~~~~~~~~~~~~~---~~~~Ll~~~gV~v~pG~~Fg~~~~  373 (400)
                        .+++.+.   |++.+.+.-++..|-|+. +++..-....    .......+   .+...+-+.|+++.+.     .+.
T Consensus       357 --g~~l~~~l~~L~~~p~i~~vRG~Glm~g-iel~~~~~~~----~~~~~~~~~~~~~~~~~~~~Gll~~~~-----gn~  424 (459)
T PRK07480        357 --GPYLQKRLRELADHPLVGEVRGVGLVGA-LELVKDKATR----ERFAAGGGVGTICRDHCFNNGLIMRAV-----GDR  424 (459)
T ss_pred             --HHHHHHHHHHHHCCCCEEEEEECCEEEE-EEEECCCCCC----CCCCCHHHHHHHHHHHHHHCCEEEEEC-----CCE
T ss_conf             --9999999998515996877230552899-9974374434----456633689999999999799499616-----998


Q ss_pred             EEEE--EECCHHHHHHHHHHHHHHHHHC
Q ss_conf             8999--6299999999999999999860
Q gi|254780602|r  374 IRIS--YAVSDAILEEACVRIKRFCHSL  399 (400)
Q Consensus       374 iRis--~~~~~e~l~~al~rl~~~l~~l  399 (400)
                      +|++  +..+++++++++++|++.|+..
T Consensus       425 l~l~PPL~it~~eid~~l~~l~~aL~~~  452 (459)
T PRK07480        425 MILSPPLVISRAEIDELVEKARKALDLT  452 (459)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             9997882388999999999999999999


No 203
>PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=99.57  E-value=1.1e-13  Score=103.35  Aligned_cols=338  Identities=14%  Similarity=0.074  Sum_probs=184.5

Q ss_pred             CCCCEEECCCC--CCCCC-CCHHHHHHHHHHHHCCCCCCCCCCCC-HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf             69972665658--97498-89999999999983887569987789-8999999998642101333322332334543333
Q gi|254780602|r   29 KGIDVLCLTAG--EPDFD-MPENVKYAVVRAMERGETKYTAVAGI-SPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVI  104 (400)
Q Consensus        29 ~g~~ii~l~~G--~p~~~-~p~~i~~a~~~al~~~~~~Y~~~~G~-~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l  104 (400)
                      .|+..||+..|  ...+. -+|.|.+|+++.+++-.  |....+. .+.+..+|+.+.+...-  .-+.|.+++++++|.
T Consensus        40 dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~l~--~~~~~~~~~~~~~~lA~~L~~~~p~--~~~~v~f~~SGsEA~  115 (421)
T PRK05964         40 DGRELIDAISSWWVATHGHNHPHIDAAIREQLDRLD--HVMFAGFTHEPAERLAKRLVALTPG--GLDHVFFSDSGSVAV  115 (421)
T ss_pred             CCCEEEECCCCHHHHCCCCCCHHHHHHHHHHHHHCC--CCCCCCCCCHHHHHHHHHHHHHCCC--CCCEEEEECCHHHHH
T ss_conf             999999936068740268998999999999997578--7546875758999999999984787--758799947813699


Q ss_pred             CCCCCCC-------CCCCCCCCCCCCCCCCCCCCCCCCC--------CC-----CCCCCCCCCCCCCCHHHHHHCCCCC-
Q ss_conf             2222222-------3322322223333232222222222--------22-----2222222223222103331000122-
Q gi|254780602|r  105 FNALMAT-------VNMGDEVLIPRPYWVSYPDMVALCG--------GI-----PVFVDTQQDDNFQVSPEKLEQAITP-  163 (400)
Q Consensus       105 ~~~~~~~-------~~~Gd~Vlv~~P~y~~y~~~~~~~g--------~~-----~~~v~~~~~~~~~~d~~~l~~~i~~-  163 (400)
                      ..+++..       ..+...|+...-+|-.-...+...+        ..     ....+.. ++....+.+.+++.+.. 
T Consensus       116 e~AiKlA~~y~~~~g~~r~~ii~~~~~yHG~T~~a~s~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~~~~le~~~~~~  194 (421)
T PRK05964        116 EVALKMALQYWRNRGEPRSRFLSLRGGYHGDTLGTMSVGMHGLFNATYGPLLFQVLALPVP-RDYEQAYLDALEALLEKH  194 (421)
T ss_pred             HHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCEEEEECCCCCCCCCCCCCCCCCCEECCCC-CCCCHHHHHHHHHHHHHC
T ss_conf             9999999999986399751899973886898513432357533457888888887655899-863388999999999747


Q ss_pred             --CCCCEEECCC--CCCCCC-CCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC-CCCCCCCCCCCEEEEECCC
Q ss_conf             --1220121135--421000-012333321112233333201110122110000012233-2221112333225741465
Q gi|254780602|r  164 --KTKWLFLNSP--SNPSGV-VYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFS-NIVNVEPSLYERTLVVNGV  237 (400)
Q Consensus       164 --~~k~i~l~nP--~NPTG~-v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~-s~~~~~~~~~~~~i~~~S~  237 (400)
                        ++-++++ -|  ++-.|. +.+++-++++.++| +++|+++|.||+...+.=.|.-+. .-..+.|+     |+  ++
T Consensus       195 ~~~iAAvi~-EP~iqg~GG~~~~p~~y~~~lr~lc-~~~gillI~DEV~tGfGRtG~~fa~e~~gv~PD-----iv--t~  265 (421)
T PRK05964        195 AGEIAAVIV-EPLVQGAGGMLFYDPRYLAELRRIC-DRHGVLLIFDEIATGFGRTGTLFACEQAGVSPD-----IM--CL  265 (421)
T ss_pred             CCCEEEEEE-ECCCCCCCCCCCCCHHHHHHHHHHH-HCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCC-----EE--EE
T ss_conf             997789999-7884678997678889999998871-006804651211026875678875430025898-----78--87


Q ss_pred             CCCCCCCCCCCCCCCCHHHHHHHHHHHC------CCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCHHHHH
Q ss_conf             4432234454442211012268753100------1222332222222222223467--6432222221100000002455
Q gi|254780602|r  238 SKAYAMTGLRIGYAAGALSLIKSMIVLQ------GQQTSGACSIAQWAAVEALNGP--QDFVVNNRKIFEYRRDLCVAQL  309 (400)
Q Consensus       238 SK~~~~~G~RiG~~v~~~~li~~l~~~~------~~~~~~~~~~~q~a~~~~l~~~--~~~~~~~~~~~~~~r~~~~~~L  309 (400)
                      +|..+-.++-+|.+++.+++.+.+..-.      ...+.+.+.+...++.+.|+.-  ++.+++.    +++-+++.+.|
T Consensus       266 gKgl~gG~~Pisav~~~~~i~~~~~~~~~~~~~~h~~T~~gnpla~aaa~a~L~~i~~~~l~~~~----~~~g~~l~~~L  341 (421)
T PRK05964        266 SKGLTGGYLPLAATLCTAEIFDAFYSDDRAKAFMHSPSYTANPLACAAANASLDLFEDEPVLERV----AALSAGLTEGL  341 (421)
T ss_pred             CCCCCCCCCCEEEEEECHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHH----HHHHHHHHHHH
T ss_conf             22035787624899985899976316787764003788888969999999999999645199999----99999999999


Q ss_pred             ---HCCCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCCCCEEEEE--EECCHHH
Q ss_conf             ---30477603302740899862641023321133224898999999998739799835022899728999--6299999
Q gi|254780602|r  310 ---QGVPGIRYMIPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGHGPSIRIS--YAVSDAI  384 (400)
Q Consensus       310 ---~~~~g~~~~~p~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~iRis--~~~~~e~  384 (400)
                         ++.+.+.-++.. |+++-+++....        .......+...+ .+.|+++.|.     .+.+|++  +..++++
T Consensus       342 ~~l~~~~~I~dvRG~-GL~~~ie~~~~~--------~~~~~~~i~~~~-~~~Glli~~~-----gn~ir~~PpL~it~~e  406 (421)
T PRK05964        342 EPFRDLPRVADVRVL-GAIGAVELDRPD--------DGRIGPALTAAF-LDRGVLLRPL-----GNTIYLMPPYIITPEE  406 (421)
T ss_pred             HHHCCCCCEEEEEEC-CEEEEEEEECCC--------CHHHHHHHHHHH-HHCCCEEEEC-----CCEEEEECCCCCCHHH
T ss_conf             974359976764104-629999972578--------679999999999-9789099966-----9999997893689999


Q ss_pred             HHHHHHHHHHHHHHC
Q ss_conf             999999999999860
Q gi|254780602|r  385 LEEACVRIKRFCHSL  399 (400)
Q Consensus       385 l~~al~rl~~~l~~l  399 (400)
                      +++++++|++.++.+
T Consensus       407 id~~~~~l~~al~ev  421 (421)
T PRK05964        407 LARITDAIVEVADEL  421 (421)
T ss_pred             HHHHHHHHHHHHHHC
T ss_conf             999999999999629


No 204
>PRK06917 hypothetical protein; Provisional
Probab=99.57  E-value=6.9e-14  Score=104.65  Aligned_cols=353  Identities=12%  Similarity=0.120  Sum_probs=183.4

Q ss_pred             HCCCCEEECCCCCC--CCC-CCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf             86997266565897--498-899999999999838875699877898999999998642101333322332334543333
Q gi|254780602|r   28 SKGIDVLCLTAGEP--DFD-MPENVKYAVVRAMERGETKYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVI  104 (400)
Q Consensus        28 ~~g~~ii~l~~G~p--~~~-~p~~i~~a~~~al~~~~~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l  104 (400)
                      ..|+..||+..|.-  .+. -+|.|.+|+++.++...+.|.. .-..+.++.+|+.+.+...  -+-+.+.+++++++|.
T Consensus        28 ~dG~~ylD~~sg~~~~~lGh~~p~i~~ai~~q~~~~~~~~~~-~~~~~~~~~la~~l~~~~p--~~~~~~~f~~SGsEAv  104 (447)
T PRK06917         28 QNGNKYFDGSSGAVTAGIGHGVKEIADVIKEQAEEVSFVYRS-QFTSEPAEKLAKKLSDLSP--GDLNWSFFVNSGSEAN  104 (447)
T ss_pred             CCCCEEEECCCCHHHHHHCCCCHHHHHHHHHHHHHCCCCCCC-CCCCHHHHHHHHHHHHHCC--CCCCEEEECCCHHHHH
T ss_conf             997999983235898982899799999999998538873666-4245899999999998578--8878799628789999


Q ss_pred             CCCCCCC-------CCCC-CCCCCCCCCCCCCCCC-CCCCCC--------------CCCCCC------CCCCCC-CC-CH
Q ss_conf             2222222-------3322-3222233332322222-222222--------------222222------222232-22-10
Q gi|254780602|r  105 FNALMAT-------VNMG-DEVLIPRPYWVSYPDM-VALCGG--------------IPVFVD------TQQDDN-FQ-VS  153 (400)
Q Consensus       105 ~~~~~~~-------~~~G-d~Vlv~~P~y~~y~~~-~~~~g~--------------~~~~v~------~~~~~~-~~-~d  153 (400)
                      ..++..-       ..+| ..|+...-+|-.-... ....|.              ..+..|      ...... .. -.
T Consensus       105 E~AiKlA~~y~~~r~~t~r~~Iis~~~syHG~T~ga~s~sg~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~  184 (447)
T PRK06917        105 ETAMKIAIQHWQERGIQGKHKILSRWMSYHGITMGALSMSGHPLRRQRFVSILEDYPTISAPYCYRCPVQKVYPTCQLAC  184 (447)
T ss_pred             HHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf             99999999999983899984899950551466660366238821147878878897744898655777776540358999


Q ss_pred             HHHHHCCCC---CC-CCCEEECCC--CCCCCCCCCC-CCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC-CCCCCCC
Q ss_conf             333100012---21-220121135--4210000123-33321112233333201110122110000012233-2221112
Q gi|254780602|r  154 PEKLEQAIT---PK-TKWLFLNSP--SNPSGVVYSQ-NRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFS-NIVNVEP  225 (400)
Q Consensus       154 ~~~l~~~i~---~~-~k~i~l~nP--~NPTG~v~s~-~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~-s~~~~~~  225 (400)
                      .+++++.+.   ++ +-+++ .-|  .+--|.+.+. +-+++|.++| +++++++|.||+...+.=.|.-+. ....+.|
T Consensus       185 ~~~le~~i~~~~~~~iAAvi-~EPi~g~~Gg~~~p~~~yl~~lr~lc-~~~gillI~DEV~tGfGRtG~~fa~e~~gv~P  262 (447)
T PRK06917        185 ATELERSIERIGAEHIAAFI-AEPIIGAAGGAVVPPKGYYKVIKDIC-SHYDILFIADEVMTGLGRTGAWFAMEHWGVEP  262 (447)
T ss_pred             HHHHHHHHHHHCCCCEEEEE-ECCCEECCCCCEECCHHHHHHHHHHH-HHCCCEEEEEECEECCCCCCCCCHHHHCCCCC
T ss_conf             99999999973887746999-71303057971646878999999996-52695289741100787568743153359897


Q ss_pred             CCCCEEEEECCCCCCCCCCCC-CCCCCCCHHHHHHHHHHHCC----CCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCC
Q ss_conf             333225741465443223445-44422110122687531001----222332222222222223467--64322222211
Q gi|254780602|r  226 SLYERTLVVNGVSKAYAMTGL-RIGYAAGALSLIKSMIVLQG----QQTSGACSIAQWAAVEALNGP--QDFVVNNRKIF  298 (400)
Q Consensus       226 ~~~~~~i~~~S~SK~~~~~G~-RiG~~v~~~~li~~l~~~~~----~~~~~~~~~~q~a~~~~l~~~--~~~~~~~~~~~  298 (400)
                      +     |+  +++|.++ .|+ -+|.+++.+++.+.+..-..    ..+.+.+.+...++.+.|+--  ++.++    ..
T Consensus       263 D-----ii--~~gK~l~-gG~~Pl~av~~~~~i~~~~~~g~~~~~~g~Tf~gnpla~aaa~a~L~~l~~~~l~~----~~  330 (447)
T PRK06917        263 D-----IM--TLGKGLG-AGYTPMAATVVSDRVMEPILRGSRSVMSGHTLSANPLSAATALAVIEYMEKHNLPE----KT  330 (447)
T ss_pred             C-----EE--EECHHHC-CCCCCEEEEEECHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHH----HH
T ss_conf             7-----89--7740111-89877389988189886540588762017789899999999999999998645999----99


Q ss_pred             CCCCCCHHHHHHCC----CCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCC--C-CC
Q ss_conf             00000002455304----77603302740899862641023321133224898999999998739799835022--8-99
Q gi|254780602|r  299 EYRRDLCVAQLQGV----PGIRYMIPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSF--G-HG  371 (400)
Q Consensus       299 ~~~r~~~~~~L~~~----~g~~~~~p~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~F--g-~~  371 (400)
                      +++-+++.+.|+++    +-+.-++..| +++=+++..-.....+......-...++.. +.+.|+++.|....  | ..
T Consensus       331 ~~~G~~l~~~L~~l~~~~~~i~dVRG~G-Lm~giel~~d~~~~~~~~~~~~~a~~i~~~-~~~~Gll~~~~~~~~~g~~~  408 (447)
T PRK06917        331 AEKGEYLIKGLQEVQQQSTIIGDVRGKG-LLIGVEFVADQKTKKPFPQPFSKASELISV-AAKNGLLLYPAVSGQAGKEG  408 (447)
T ss_pred             HHHHHHHHHHHHHHHHCCCCEEEEEECC-EEEEEEEECCCCCCCCCCCCHHHHHHHHHH-HHHCCCEEEECCCCCCCCCC
T ss_conf             9999999999999986399778765156-169999842665567787248999999999-99789889874456778999


Q ss_pred             CEEEEE--EECCHHHHHHHHHHHHHHHHHC
Q ss_conf             728999--6299999999999999999860
Q gi|254780602|r  372 PSIRIS--YAVSDAILEEACVRIKRFCHSL  399 (400)
Q Consensus       372 ~~iRis--~~~~~e~l~~al~rl~~~l~~l  399 (400)
                      +.+|++  +..+++++++++++|.+.++++
T Consensus       409 ~~lrl~PPL~it~~eid~~i~~l~~al~ev  438 (447)
T PRK06917        409 SALLIAPPMTTTYSELDELLSIFAKSVEEM  438 (447)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             989997992278999999999999999999


No 205
>PRK13520 L-tyrosine decarboxylase; Provisional
Probab=99.57  E-value=4.7e-14  Score=105.65  Aligned_cols=345  Identities=13%  Similarity=0.085  Sum_probs=199.3

Q ss_pred             HHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf             99999999999869972665658974988999999999998388756998778989999999986421013333223323
Q gi|254780602|r   17 LVAAQRVRDLRSKGIDVLCLTAGEPDFDMPENVKYAVVRAMERGETKYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIV   96 (400)
Q Consensus        17 ~~~~~~~~~~~~~g~~ii~l~~G~p~~~~p~~i~~a~~~al~~~~~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~e~I~i   96 (400)
                      -++.+..++......+ .+...|..-.++.|...+++...+......+...++..++-+.+.+|+.+.+|.+ ++. =.+
T Consensus         9 ~~v~~~l~~~~~~d~~-~~~~~~~~~~~~~~~a~~a~~~~~~~N~~~~~~~P~~~~mE~~vv~~~a~l~g~p-~~~-G~~   85 (375)
T PRK13520          9 EEILSELEEYRSEDLK-YERILSSMCTKPHPIAREAHEMFLETNLGDPGLFPGTAKLEREVVRMLGELLHLP-DAY-GYI   85 (375)
T ss_pred             HHHHHHHHHHHCCCCC-HHHEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCC-CCE-EEE
T ss_conf             9999999998714899-7573477647834999999999996178985338779999999999999980999-880-899


Q ss_pred             CCCCCCCCCCCCCCCCCC--C--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEECC
Q ss_conf             345433332222222332--2--322223333232222222222222222222223222103331000122122012113
Q gi|254780602|r   97 GTGAKHVIFNALMATVNM--G--DEVLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQAITPKTKWLFLNS  172 (400)
Q Consensus        97 t~G~~~~l~~~~~~~~~~--G--d~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~k~i~l~n  172 (400)
                      |+|+++++.+++.+.=+.  +  .+|+++.-.-..+...+.++|.+++.+|++++  +.+|+++++++++++|-+|+-+-
T Consensus        86 tsGGTes~l~Al~aaR~~~~~~~p~iv~~~~aH~s~~Kaa~~~gi~~~~vp~d~~--~~~d~~~l~~~i~~~ti~vvata  163 (375)
T PRK13520         86 TSGGTEANIQAVRAARNLADAEKPNIVVPESAHFSFDKAADMLGLELRRAPLDED--YRVDVKSVEDLIDDNTIGIVGIA  163 (375)
T ss_pred             ECHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHCCCEEEEEEECCC--CCCCHHHHHHHHHHCCEEEEEEC
T ss_conf             5618999999999997626899987999673169999999974955699403888--86989999998864957999925


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC--CCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCC
Q ss_conf             5421000012333321112233333201110122110000--01223322211123332257414654432234454442
Q gi|254780602|r  173 PSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVY--RNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTGLRIGY  250 (400)
Q Consensus       173 P~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~--~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~  250 (400)
                      |+-|||.+=   .+++|.++| +++++|+-+|.+|+.++.  -... .++..-.++.  ..|.+ ++.|.. ..-.-+|+
T Consensus       164 gtt~~G~iD---pi~~i~~i~-~~~~i~lHVDaa~GGf~~pf~~~~-~~~df~l~~v--dSIs~-d~HK~g-~~p~g~g~  234 (375)
T PRK13520        164 GTTELGQVD---PIPELSKIA-LENDIFLHVDAAFGGFVIPFLDDP-YDFDFSLPGV--SSITI-DPHKMG-LAPIPAGG  234 (375)
T ss_pred             CCCCCEEEC---CHHHHHHHH-HHCCCEEEEECCCCEEEEECCCCC-CCCCCCCCCE--EEEEE-CCCCCC-CCCCCEEE
T ss_conf             887882235---999999999-975974998625520221125766-4000477880--26424-611136-51577159


Q ss_pred             CCC-HHHHHHHHHHHCCCCCCC------CCC-----CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEE-
Q ss_conf             211-012268753100122233------222-----2222222223467643222222110000000245530477603-
Q gi|254780602|r  251 AAG-ALSLIKSMIVLQGQQTSG------ACS-----IAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQGVPGIRY-  317 (400)
Q Consensus       251 ~v~-~~~li~~l~~~~~~~~~~------~~~-----~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~~~~~L~~~~g~~~-  317 (400)
                      ++. ++++.+.+..-..+....      -+.     ..+++....+  +.+-+.+..+...+..+++.+.|+++ |+.. 
T Consensus       235 vl~r~~~~~~~~~~~~~Yl~~~~~~tl~gSR~g~~~~~~Wa~l~~~--G~~Gy~~~~~~~~~~a~~la~~l~~~-g~e~~  311 (375)
T PRK13520        235 ILFRDPEFLDALDVDTPYLTSKKQATLTGTRSGAGVAATYAVMKYL--GREGYRKVVERCMENTRYLVEELEKL-GFEPV  311 (375)
T ss_pred             EEECCHHHHHHHCCCCHHHCCCCCEEEECCCCCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHC-CCEEE
T ss_conf             9987889998724677143589873560588775599999999997--39999999999999999999999867-99897


Q ss_pred             EECCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCCCCEEEEEEE--CCHHHHHHHHHHHHHH
Q ss_conf             30274089986264102332113322489899999999873979983502289972899962--9999999999999999
Q gi|254780602|r  318 MIPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGHGPSIRISYA--VSDAILEEACVRIKRF  395 (400)
Q Consensus       318 ~~p~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~iRis~~--~~~e~l~~al~rl~~~  395 (400)
                      ..|+-...+| +.              .+..++.+.| ++.|=.+ +...  .+..+||++.  .+.+.+++-++-|++.
T Consensus       312 ~~P~~~iV~F-r~--------------~~~~~l~d~l-~~~GW~v-~~~~--~P~~lhivv~~~~~~~~id~fl~DL~e~  372 (375)
T PRK13520        312 IEPVLNIVAF-DD--------------PNPHEVRKKL-RERGWRV-SVTR--CPEALRIVVMPHVTREHIEAFLEDLDEV  372 (375)
T ss_pred             CCCCCEEEEE-EC--------------CCHHHHHHHH-HHCCCEE-CCCC--CCCEEEEEEECCCCHHHHHHHHHHHHHH
T ss_conf             0898139999-57--------------9999999999-9769874-5788--9984899995999989999999999999


Q ss_pred             HH
Q ss_conf             98
Q gi|254780602|r  396 CH  397 (400)
Q Consensus       396 l~  397 (400)
                      .+
T Consensus       373 ~~  374 (375)
T PRK13520        373 KK  374 (375)
T ss_pred             HH
T ss_conf             52


No 206
>PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional
Probab=99.57  E-value=1.7e-14  Score=108.42  Aligned_cols=344  Identities=12%  Similarity=0.142  Sum_probs=182.9

Q ss_pred             CCCCEEECCCCC--CCCC-CCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             699726656589--7498-8999999999998388756998778989999999986421013333223323345433332
Q gi|254780602|r   29 KGIDVLCLTAGE--PDFD-MPENVKYAVVRAMERGETKYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIF  105 (400)
Q Consensus        29 ~g~~ii~l~~G~--p~~~-~p~~i~~a~~~al~~~~~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l~  105 (400)
                      +|+..||+..|.  ..+. -+|.|.+|+.+.++.+.. |..+   .++...+|+.+.+...   ..+.|.+++++++|..
T Consensus        51 dG~~yiD~~~g~g~~~lGh~~p~v~~Ai~~q~~~g~~-~~~~---~~~~~~lAe~l~~~~p---~~~~v~F~~sGsEA~e  123 (429)
T PRK12389         51 DGNKYIDYLAAYGPIITGHAHPHITKAIQTAAENGVL-YGTP---TELEIEFAKMLKEAIP---SLEKVRFVNSGTEAVM  123 (429)
T ss_pred             CCCEEEECCHHHHHHCCCCCCHHHHHHHHHHHHHCCC-CCCC---CHHHHHHHHHHHHHCC---CCCEEEEECCCHHHHH
T ss_conf             9899988322166540038989999999999823885-7799---8999999999998578---8766986268428999


Q ss_pred             CCCCCCC-CCC-CCCCCCCCCCCCCCCCCC-CCCCCC--C------CCCCCC-CCCCC---CHHHHHHCCCC---CCCCC
Q ss_conf             2222223-322-322223333232222222-222222--2------222222-23222---10333100012---21220
Q gi|254780602|r  106 NALMATV-NMG-DEVLIPRPYWVSYPDMVA-LCGGIP--V------FVDTQQ-DDNFQ---VSPEKLEQAIT---PKTKW  167 (400)
Q Consensus       106 ~~~~~~~-~~G-d~Vlv~~P~y~~y~~~~~-~~g~~~--~------~v~~~~-~~~~~---~d~~~l~~~i~---~~~k~  167 (400)
                      .+++.-- ..| ++|+...-+|-.+...+. ..|..+  .      .+|... +.-+.   -|++.+++.+.   ++.-+
T Consensus       124 ~AiklAR~~tgr~kii~~~~~yHG~t~~~l~~~~~~~~~~~~p~~~g~p~~~~~~~~~~p~nd~~~l~~~l~~~~~~iAa  203 (429)
T PRK12389        124 TTIRVARAYTGRTKIIKFAGCYHGHSDLVLVAAGSGPSTLGTPDSAGVPESIAQEVITVPFNDIESYKEALDKWGDEVAA  203 (429)
T ss_pred             HHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHCCCCEEE
T ss_conf             99999998349996541145759985432231368853468987678876555652530789999999999845896689


Q ss_pred             EEECCC-CCCCCCCCC-CCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCC
Q ss_conf             121135-421000012-333321112233333201110122110000012233222111233322574146544322344
Q gi|254780602|r  168 LFLNSP-SNPSGVVYS-QNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTG  245 (400)
Q Consensus       168 i~l~nP-~NPTG~v~s-~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~~~G  245 (400)
                      |++ -| .--.|.+.+ ++-+++|-++| +++++++|.||+...|.....-......+.|+       +-+++|..+ .|
T Consensus       204 vI~-EPi~g~~G~i~p~~~yl~~lr~lc-~~~giLLI~DEV~TGfR~g~~~a~~~~gV~PD-------i~t~gK~lg-gG  273 (429)
T PRK12389        204 VLV-EPIVGNFGIVEPKPGFLEEVNELA-HEAGALVIYDEVITAFRFMYGGAQDLLGVIPD-------LTALGKIIG-GG  273 (429)
T ss_pred             EEE-ECCCCCCCEECCCHHHHHHHHHHH-HHCCCEEEEECCCCCCCCCCCCHHHCCCCCCC-------HHHEHHHCC-CC
T ss_conf             996-022367880169989999999999-97198899965510315666707655389997-------100103227-98


Q ss_pred             CCCCCCCCHHHHHHHHHHH---CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCC---CCCEEEE
Q ss_conf             5444221101226875310---012223322222222222234676432222221100000002455304---7760330
Q gi|254780602|r  246 LRIGYAAGALSLIKSMIVL---QGQQTSGACSIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQGV---PGIRYMI  319 (400)
Q Consensus       246 ~RiG~~v~~~~li~~l~~~---~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~~~~~L~~~---~g~~~~~  319 (400)
                      +-+|.+++.+++++.+...   ....+.+.+.+...|+++.|+.-++  +...+..++.-+++.+.|+++   .++....
T Consensus       274 ~Pi~av~g~~eim~~~~~~g~~~~~gTf~gnpla~AAalA~L~~l~~--~~l~~~~~~~G~~l~~gl~~l~~~~~~~~~v  351 (429)
T PRK12389        274 LPIGAYGGRQDIMEQVAPLGPAYQAGTMAGNPASMAAGIACLEVLQQ--EGVYEKLDELGAMLEEGILKLAEKHNITITI  351 (429)
T ss_pred             CCEEEEEEHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf             64488767799998731579850258888688999999999999971--6899999999999999999999877998799


Q ss_pred             -CCCCEE-EEEECCCCCCCCCCCCCCCCCH---HHHHHHHHHHCCEEEECCCCCCCCCEEEEEEECCHHHHHHHHHHHHH
Q ss_conf             -274089-9862641023321133224898---99999999873979983502289972899962999999999999999
Q gi|254780602|r  320 -PDGAFY-LYPSCQDLIGKKSPSGDVIRTD---LDFVNGLLEIEKVAVVQGSSFGHGPSIRISYAVSDAILEEACVRIKR  394 (400)
Q Consensus       320 -p~g~~y-~~~~~~~~~~~~~~~~~~~~~~---~~~~~~Ll~~~gV~v~pG~~Fg~~~~iRis~~~~~e~l~~al~rl~~  394 (400)
                       --|+++ ++............   ...+.   ..|+..+ .+.||.+.|+.   ... ..+|++.++++++++++.+++
T Consensus       352 ~~~g~~~~i~f~~~~v~~~~~~---~~~~~~~~~~~~~~m-l~~Gv~~~p~~---~~~-~~ls~~hTe~dId~~l~a~d~  423 (429)
T PRK12389        352 NRLKGALTVYFTDEKVTDYDQA---ERSDGEAFGKFFKLM-LNQGINLAPSK---YEA-WFLTTEHTEEDIEETIKAVDR  423 (429)
T ss_pred             EECCCEEEEEECCCCCCCHHHH---HHCCHHHHHHHHHHH-HHCCCCCCCCC---CCC-CCCCCCCCHHHHHHHHHHHHH
T ss_conf             4148568999458988898998---615799999999999-97886456867---777-416467899999999999999


Q ss_pred             HHHHC
Q ss_conf             99860
Q gi|254780602|r  395 FCHSL  399 (400)
Q Consensus       395 ~l~~l  399 (400)
                      .++.|
T Consensus       424 al~~l  428 (429)
T PRK12389        424 AFAQM  428 (429)
T ss_pred             HHHHH
T ss_conf             99975


No 207
>PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed
Probab=99.56  E-value=4.4e-14  Score=105.86  Aligned_cols=333  Identities=15%  Similarity=0.138  Sum_probs=183.7

Q ss_pred             CCCCEEECCCCCC--CCC-CCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             6997266565897--498-8999999999998388756998778989999999986421013333223323345433332
Q gi|254780602|r   29 KGIDVLCLTAGEP--DFD-MPENVKYAVVRAMERGETKYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIF  105 (400)
Q Consensus        29 ~g~~ii~l~~G~p--~~~-~p~~i~~a~~~al~~~~~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l~  105 (400)
                      +|+..||+..|.-  .+. -+|.|.+|+++.++...  |....-..+.+..+++.+.+..+    .+.+++++++++|..
T Consensus        42 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~l~--~~~~~~~~~~~~~l~~~l~~~~~----~~~v~f~~SGsEAve  115 (404)
T PRK00854         42 DGRRYLDCLSAYSAVNQGHCHPKILAAMVEQAGRLT--LTSRAFRNDQLAPLYEELAALTG----SHKVLPMNSGAEAVE  115 (404)
T ss_pred             CCCEEEECCCCHHHHHHCCCCHHHHHHHHHHHHHCC--CCCCCCCCHHHHHHHHHHHHCCC----CCEEEECCCHHHHHH
T ss_conf             999998826299977542797999999999985678--65554265799999999974037----684885587799999


Q ss_pred             CCCCCCC---------CCC-CCCCCCCCCCCCCCCCC-CCCC---CCCCCCCCCCCCCC--CCHHHHHHCCCCCCCCCEE
Q ss_conf             2222223---------322-32222333323222222-2222---22222222222322--2103331000122122012
Q gi|254780602|r  106 NALMATV---------NMG-DEVLIPRPYWVSYPDMV-ALCG---GIPVFVDTQQDDNF--QVSPEKLEQAITPKTKWLF  169 (400)
Q Consensus       106 ~~~~~~~---------~~G-d~Vlv~~P~y~~y~~~~-~~~g---~~~~~v~~~~~~~~--~~d~~~l~~~i~~~~k~i~  169 (400)
                      .+++..-         ..| .+|+...-+|......+ ...+   .+..+-|..+.-..  ..|.+++++.+.+++-+++
T Consensus       116 ~AiklAr~~~~~~~g~~tgr~~ii~~~~~yHG~t~~~~s~s~~~~~~~~~~~~~~~~~~~p~~d~~~l~~~~~~~~aAvi  195 (404)
T PRK00854        116 TAIKAVRKWGYEVKGVPEGQAEIIVCADNFHGRTLSIVGFSTDPDARGGFGPFAPGFRVVPFGDAAALEAAITPNTVAFL  195 (404)
T ss_pred             HHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCHHHHHHHHCCCEEEEE
T ss_conf             99999999876503787898559996456678601354346774335688899998155056668999986398748999


Q ss_pred             ECCC-CCCCCCC-CCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC-CCCCCCCCCCCEEEEECCCCCCCCCCCC
Q ss_conf             1135-4210000-12333321112233333201110122110000012233-2221112333225741465443223445
Q gi|254780602|r  170 LNSP-SNPSGVV-YSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFS-NIVNVEPSLYERTLVVNGVSKAYAMTGL  246 (400)
Q Consensus       170 l~nP-~NPTG~v-~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~-s~~~~~~~~~~~~i~~~S~SK~~~~~G~  246 (400)
                      + -| +-..|.+ .+++.+++|-++| +++|+++|.||+...+.=.|.-+. ....+.|+     |+  +++|..+ .|+
T Consensus       196 i-EPiqg~gG~~~~~~~yl~~lr~lc-~~~gillI~DEV~TGfGRtG~~fa~e~~gv~PD-----ii--~~gKgl~-gG~  265 (404)
T PRK00854        196 I-EPIQGEAGVIIPPAGYFRRVRELC-TANNVTLILDEIQTGLGRTGKLLAEEHEGIEAD-----VT--LIGKALS-GGF  265 (404)
T ss_pred             E-ECCCCCCCCCCCCHHHHHHHHHHH-HHHCCCCCCCCCCCCCCCCCCCCHHHHCCCCCC-----EE--EECCCCC-CCC
T ss_conf             9-177577896179989999999999-970764457500017863557414554248979-----89--7564445-887


Q ss_pred             -CCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCHHHHHHCCC--CCEEEECC
Q ss_conf             -44422110122687531001222332222222222223467--64322222211000000024553047--76033027
Q gi|254780602|r  247 -RIGYAAGALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGP--QDFVVNNRKIFEYRRDLCVAQLQGVP--GIRYMIPD  321 (400)
Q Consensus       247 -RiG~~v~~~~li~~l~~~~~~~~~~~~~~~q~a~~~~l~~~--~~~~~~~~~~~~~~r~~~~~~L~~~~--g~~~~~p~  321 (400)
                       -+|.+++.+++++.+.......+.+.+.+...++.+.|+.-  ++.++    ..++.-+++.+.|+++.  .+.-++..
T Consensus       266 ~Pl~av~~~~~i~~~~~~~~h~~T~~gnpla~aaa~a~l~~i~~e~l~~----~~~~~g~~l~~~L~~l~~~~i~~VRG~  341 (404)
T PRK00854        266 YPVSAVLSNSEVLGVLRPGQHGSTFGGNPLACAVARAALRVLVEEGMIE----NAAEQGAYFLEGLRAIRGNIVREVRGR  341 (404)
T ss_pred             CCCCEEECCHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHH----HHHHHHHHHHHHHHHCCCCCEEEEEEC
T ss_conf             6532020479999506798877888989899999999999998658999----999999999999985048972766444


Q ss_pred             CCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCCCCEEEEE--EECCHHHHHHHHHHHHHHHH
Q ss_conf             40899862641023321133224898999999998739799835022899728999--62999999999999999998
Q gi|254780602|r  322 GAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGHGPSIRIS--YAVSDAILEEACVRIKRFCH  397 (400)
Q Consensus       322 g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~iRis--~~~~~e~l~~al~rl~~~l~  397 (400)
                      | +++=+++...          ......++..+ .+.|+++.+.    .++.||+.  +..+++++++++++|++.|.
T Consensus       342 G-lm~gve~~~~----------~~~~~~~~~~~-~~~Gll~~~~----~~~~ir~~PPL~it~~eid~~l~~l~~~La  403 (404)
T PRK00854        342 G-LMLAVELEPE----------AGGARQYCEAL-KARGLLAKDT----HDHTIRLAPPLVITREQVDWAVSQIAKVLA  403 (404)
T ss_pred             C-EEEEEEEECC----------HHHHHHHHHHH-HHCCEEECCC----CCCEEEEECCCCCCHHHHHHHHHHHHHHHC
T ss_conf             5-5999998556----------67799999999-9799598748----999899979957899999999999999966


No 208
>PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional
Probab=99.56  E-value=2.5e-14  Score=107.33  Aligned_cols=341  Identities=15%  Similarity=0.167  Sum_probs=179.4

Q ss_pred             CCCCEEECCCCC--CCCC-CCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             699726656589--7498-8999999999998388756998778989999999986421013333223323345433332
Q gi|254780602|r   29 KGIDVLCLTAGE--PDFD-MPENVKYAVVRAMERGETKYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIF  105 (400)
Q Consensus        29 ~g~~ii~l~~G~--p~~~-~p~~i~~a~~~al~~~~~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l~  105 (400)
                      .|+.-||+..|.  ..+. -+|.|.+|+.+.++.+. .|..+   -+....+|+.+.+...   ..+.|.+++++++|..
T Consensus        50 dG~~YlD~~~g~~~~~lGH~~p~v~~Ai~~q~~~~~-~~~~~---~~~~~~lAe~l~~~~p---~~~~v~f~~sGsEAve  122 (429)
T PRK00062         50 DGNEYIDYVLSWGPMILGHAHPAVVEAVIEAAEKGL-SFGAP---TELEVKLAELVIERVP---SVEMVRMVNSGTEATM  122 (429)
T ss_pred             CCCEEEECCCCHHHCCCCCCCHHHHHHHHHHHHHCC-CCCCC---CHHHHHHHHHHHHHCC---CCCEEEEECCHHHHHH
T ss_conf             999998833076650018997999999999986357-66699---7899999999985589---8777987187699999


Q ss_pred             CCCCCC---CCCCCCCCCCCCCCCCCCCCC-CCC--CCCCCC------CCCCC-CCCCC---CHHHHHHCCCCC---CCC
Q ss_conf             222222---332232222333323222222-222--222222------22222-23222---103331000122---122
Q gi|254780602|r  106 NALMAT---VNMGDEVLIPRPYWVSYPDMV-ALC--GGIPVF------VDTQQ-DDNFQ---VSPEKLEQAITP---KTK  166 (400)
Q Consensus       106 ~~~~~~---~~~Gd~Vlv~~P~y~~y~~~~-~~~--g~~~~~------v~~~~-~~~~~---~d~~~l~~~i~~---~~k  166 (400)
                      .+++.-   +. .+.|+...-+|-.+...+ ...  |.....      +|... ++-+.   -|++.+++.+.+   ++-
T Consensus       123 ~AiklAR~~tg-r~~ii~~~g~YHG~~d~~l~~~gs~~~~~~~p~~~g~p~~~~~~~~~~~~nd~~~~~~~l~~~~~~iA  201 (429)
T PRK00062        123 SAIRLARGFTG-RDKIIKFEGCYHGHSDSLLVKAGSGVATLGLPDSPGVPADFAKNTLTAPYNDLEAVKAAFEEYGDEIA  201 (429)
T ss_pred             HHHHHHHHHHC-CCCEEEECCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHCCCCEE
T ss_conf             99999976118-87621114656688620565348975446789988997644475263057778888999985688656


Q ss_pred             CEEECCC-CCCCCCCC-CCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCC-CCCCCCCCCCCCEEEEECCCCCCCCC
Q ss_conf             0121135-42100001-233332111223333320111012211000001223-32221112333225741465443223
Q gi|254780602|r  167 WLFLNSP-SNPSGVVY-SQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQF-SNIVNVEPSLYERTLVVNGVSKAYAM  243 (400)
Q Consensus       167 ~i~l~nP-~NPTG~v~-s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~-~s~~~~~~~~~~~~i~~~S~SK~~~~  243 (400)
                      ++++ -| .--.|.+. +++-++++-++| +++++++|.||+...|.. +.-+ .....+.|+     |+  +++|..+ 
T Consensus       202 Aviv-EPi~g~~G~i~p~~~yl~~lr~lc-~~~giLlI~DEV~tGfRt-G~~~a~e~~gv~PD-----i~--t~gK~lg-  270 (429)
T PRK00062        202 CVIV-EPVAGNMGCVPPLPGFLEGLRELT-DENGALLIFDEVMTGFRV-AYGGAQGYYGVTPD-----LT--TLGKVIG-  270 (429)
T ss_pred             EEEE-EEECCCCCEEECCHHHHHHHHHHH-CCCCEEEEEECCCCCEEC-CCCHHHCCCCCCCC-----EE--EECCCCC-
T ss_conf             9997-432377861448889999999996-046647999714257005-76435417899896-----89--9632347-


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHC---CCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCHHHHHHCC---CCC
Q ss_conf             4454442211012268753100---1222332222222222223467--6432222221100000002455304---776
Q gi|254780602|r  244 TGLRIGYAAGALSLIKSMIVLQ---GQQTSGACSIAQWAAVEALNGP--QDFVVNNRKIFEYRRDLCVAQLQGV---PGI  315 (400)
Q Consensus       244 ~G~RiG~~v~~~~li~~l~~~~---~~~~~~~~~~~q~a~~~~l~~~--~~~~~~~~~~~~~~r~~~~~~L~~~---~g~  315 (400)
                      .|+-+|.+++.+++++.+....   ...+++.++++..|+.+.|+.-  ++.+++    .++.-+++.+.|+++   .++
T Consensus       271 gG~Pi~av~~~~eim~~~~~~g~~~~~gTf~gnpla~AAa~a~L~~l~~~~l~~~----~~~~G~~l~~~l~~~~~~~~~  346 (429)
T PRK00062        271 GGLPVGAFGGRREIMEQLAPLGPVYQAGTLSGNPLAMAAGLATLRLLDQEGVYET----LDALTDRLAEGLKEAAEKAGI  346 (429)
T ss_pred             CCCCEEEEEEHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHH----HHHHHHHHHHHHHHHHHHCCC
T ss_conf             9875378867799998637589841258788887999999999999973579999----999999999999999987799


Q ss_pred             E-EEECCCCEEE-EEECCCCCCCCCCCCCCCCCH---HHHHHHHHHHCCEEEECCCCCCCCCEEEEEEECCHHHHHHHHH
Q ss_conf             0-3302740899-862641023321133224898---9999999987397998350228997289996299999999999
Q gi|254780602|r  316 R-YMIPDGAFYL-YPSCQDLIGKKSPSGDVIRTD---LDFVNGLLEIEKVAVVQGSSFGHGPSIRISYAVSDAILEEACV  390 (400)
Q Consensus       316 ~-~~~p~g~~y~-~~~~~~~~~~~~~~~~~~~~~---~~~~~~Ll~~~gV~v~pG~~Fg~~~~iRis~~~~~e~l~~al~  390 (400)
                      . .....|.++- ++.-........   ....+.   ..|...|+ ++||.+.|.. |.  + ..+|++.++++++++++
T Consensus       347 ~~~v~G~G~m~~i~f~~~~~~~~~~---~~~~d~~~~~~~~~~m~-~~Gv~~~p~~-~~--~-~~ls~aht~~did~~l~  418 (429)
T PRK00062        347 PLVVNRVGSMFGIFFTDEPVTNYED---AKASDTERFARFFHAML-EEGVYLAPSQ-FE--A-GFVSTAHTDEDIEKTLA  418 (429)
T ss_pred             CEEEEEECCEEEEEECCCCCCCHHH---HHHCCHHHHHHHHHHHH-HCCCCCCCCC-CC--C-CEEECCCCHHHHHHHHH
T ss_conf             8799965747899964898889899---86442999999999999-7886447864-24--7-11033589999999999


Q ss_pred             HHHHHHHHCC
Q ss_conf             9999998609
Q gi|254780602|r  391 RIKRFCHSLQ  400 (400)
Q Consensus       391 rl~~~l~~l~  400 (400)
                      ++++.++.|.
T Consensus       419 a~~~al~~l~  428 (429)
T PRK00062        419 AAREAFAALA  428 (429)
T ss_pred             HHHHHHHHHH
T ss_conf             9999999984


No 209
>PRK04260 acetylornithine aminotransferase; Provisional
Probab=99.56  E-value=4e-14  Score=106.07  Aligned_cols=333  Identities=15%  Similarity=0.132  Sum_probs=185.8

Q ss_pred             HCCCCEEECCCCC--CCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             8699726656589--74988999999999998388756998778989999999986421013333223323345433332
Q gi|254780602|r   28 SKGIDVLCLTAGE--PDFDMPENVKYAVVRAMERGETKYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIF  105 (400)
Q Consensus        28 ~~g~~ii~l~~G~--p~~~~p~~i~~a~~~al~~~~~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l~  105 (400)
                      .+|+..+|+..|.  ..+.-.|.|.+|+.+.++.-  .+.+..-..++++.+++.+-..     ....+++++++++|..
T Consensus        26 ~dG~~ylD~~~g~~~~~lGh~p~i~~ai~~q~~~~--~~~~~~~~~~~~~~la~~l~~~-----~~~~~~f~~SGSEAve   98 (375)
T PRK04260         26 TTGKTYLDFSSGIGVTNLGFHPQVQQALTDQAGLI--WHSPNLYLSSLQEEVAQKLTGD-----KDYLAFFCNSGAEANE   98 (375)
T ss_pred             CCCCEEEEECCCHHHHCCCCCHHHHHHHHHHHHHC--CCCCHHHHHHHHHHHHHHCCCC-----CCCEEEECCCHHHHHH
T ss_conf             97799999153787640278999999999998565--6987477889999999852366-----6747997086789999


Q ss_pred             CCCCCCC-CC-CCCCCCCCCCCCCCCC-CCCCCCCCCCCC---CCCCCCCC--CCHHHHHHCCCCCCCCCEEECCC-CCC
Q ss_conf             2222223-32-2322223333232222-222222222222---22222322--21033310001221220121135-421
Q gi|254780602|r  106 NALMATV-NM-GDEVLIPRPYWVSYPD-MVALCGGIPVFV---DTQQDDNF--QVSPEKLEQAITPKTKWLFLNSP-SNP  176 (400)
Q Consensus       106 ~~~~~~~-~~-Gd~Vlv~~P~y~~y~~-~~~~~g~~~~~v---~~~~~~~~--~~d~~~l~~~i~~~~k~i~l~nP-~NP  176 (400)
                      .+++..- .. .++|+...-+|-.... .....|.....-   +..+.-.+  .-|++.+++...++..++++- | +--
T Consensus        99 ~AlklAr~~tgr~~ii~~~~~yHG~t~ga~s~tg~~~~~~~~~~~~p~~~~~~~~d~~~~~~~~~~~iAAiiiE-piqg~  177 (375)
T PRK04260         99 AAIKLARKATGKQEIITFQNSFHGRTFGAMSATGQDKIKQGFGDGVPHFSYAIFNDLNSVKALVNKNTAAVMLE-LVQGE  177 (375)
T ss_pred             HHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHCCCCEEEEEE-EECCC
T ss_conf             99998765479986999778899674401220487433457788998734521045889998637783599998-10588


Q ss_pred             CCCCC-CCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC-CCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCH
Q ss_conf             00001-2333321112233333201110122110000012233-222111233322574146544322344544422110
Q gi|254780602|r  177 SGVVY-SQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFS-NIVNVEPSLYERTLVVNGVSKAYAMTGLRIGYAAGA  254 (400)
Q Consensus       177 TG~v~-s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~-s~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~v~~  254 (400)
                      .|.+. +++-+++|.++| +++|+++|.||+...|.=.|.-+. ....+.|+     |++  ++|.++ .|+-+|.+++.
T Consensus       178 ~G~~~~~~~yl~~lr~lc-~~~gillI~DEV~tGfGRtG~~fa~e~~gv~PD-----iv~--~gKglg-~G~P~sav~~~  248 (375)
T PRK04260        178 SGVLPADKAFVKALADYC-QETGILLIVDEVQTGIGRTGKLYAFEHYGIEPD-----IFT--LAKGLA-NGLPVGAMLGK  248 (375)
T ss_pred             CCCCCCCHHHHHHHHHHH-HHHCCCEEEECCCCCCCCCCCCCHHHCCCCCCC-----EEE--ECHHCC-CCCCEEEEEEC
T ss_conf             987578989999999999-984762573012117876568655431698887-----898--710104-88643999986


Q ss_pred             HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEECCCCEEEEEECCC
Q ss_conf             122687531001222332222222222223467--643222222110000000245530477603302740899862641
Q gi|254780602|r  255 LSLIKSMIVLQGQQTSGACSIAQWAAVEALNGP--QDFVVNNRKIFEYRRDLCVAQLQGVPGIRYMIPDGAFYLYPSCQD  332 (400)
Q Consensus       255 ~~li~~l~~~~~~~~~~~~~~~q~a~~~~l~~~--~~~~~~~~~~~~~~r~~~~~~L~~~~g~~~~~p~g~~y~~~~~~~  332 (400)
                      +++.+.+.......+.+.+++...++.+.|+.-  ++.+++.++.-+.-++.+.+.+++.|.+.-++.. |+++=+++. 
T Consensus       249 ~~i~~~~~~~~h~~T~~gnpla~aaa~a~L~~i~~~~l~~~~~~~g~~l~~~L~~~~~~~~~i~~vRG~-Gl~~gie~~-  326 (375)
T PRK04260        249 SSLGGAFGYGSHGSTFGGNKLSMAAAKATLEIMLTAGFLETVLSKGNKLQEQLQEALQDKETVTTVRGL-GYMIGIETT-  326 (375)
T ss_pred             HHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEE-EEEEEEEEC-
T ss_conf             787446678785777998989999999999999864699999999999999999998539973763055-799999957-


Q ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCCCCEEEEE--EECCHHHHHHHHHHHHHHH
Q ss_conf             023321133224898999999998739799835022899728999--6299999999999999999
Q gi|254780602|r  333 LIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGHGPSIRIS--YAVSDAILEEACVRIKRFC  396 (400)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~iRis--~~~~~e~l~~al~rl~~~l  396 (400)
                                  .+..+++..+ .+.|+++.++.    .+.||+.  +..+++++++++++|++.+
T Consensus       327 ------------~~~~~~~~~~-~~~Gll~~~~g----~nvi~~~Ppl~it~~eid~~~~~l~~vF  375 (375)
T PRK04260        327 ------------ADLSQLVQAA-RDKGLIILTAG----TNVIRLLPPLTISKAEIEKGIAILSEIF  375 (375)
T ss_pred             ------------CCHHHHHHHH-HHCCCEEEECC----CCEEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf             ------------8999999999-96896994079----9989998993488999999999999869


No 210
>PRK07678 aminotransferase; Validated
Probab=99.55  E-value=1.2e-13  Score=103.10  Aligned_cols=352  Identities=11%  Similarity=0.081  Sum_probs=177.7

Q ss_pred             CCCCEEECCCCCC--CCC-CCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             6997266565897--498-8999999999998388756998778989999999986421013333223323345433332
Q gi|254780602|r   29 KGIDVLCLTAGEP--DFD-MPENVKYAVVRAMERGETKYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIF  105 (400)
Q Consensus        29 ~g~~ii~l~~G~p--~~~-~p~~i~~a~~~al~~~~~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l~  105 (400)
                      +|++.||+..|--  .+. -+|.|.+|+++.++... .++..... +.+..+|+.+.+..+.+   ..|++++++++|..
T Consensus        45 dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~l~-~~~~~~~~-~~~~~lae~L~~~~p~~---~~vff~~SGsEAvE  119 (451)
T PRK07678         45 QGKRYLDGMSGLWCVNVGYGRKELAEAAYEQLQTLS-YFPLSQSH-EPAIKLAEKLNEWLGGE---YVIFFSNSGSEANE  119 (451)
T ss_pred             CCCEEEECCCCHHHHHHCCCCHHHHHHHHHHHHHCC-CCCCCCCC-HHHHHHHHHHHHHCCCC---CEEEECCCHHHHHH
T ss_conf             889999987089863426996999999999997588-86775346-89999999999757976---18995397389999


Q ss_pred             CCCCCCC-------CCCC-CCCCCCCCCCCCCCCC-CCCCC---C---------CCCCCC----C-CCCC----C-CCHH
Q ss_conf             2222223-------3223-2222333323222222-22222---2---------222222----2-2232----2-2103
Q gi|254780602|r  106 NALMATV-------NMGD-EVLIPRPYWVSYPDMV-ALCGG---I---------PVFVDT----Q-QDDN----F-QVSP  154 (400)
Q Consensus       106 ~~~~~~~-------~~Gd-~Vlv~~P~y~~y~~~~-~~~g~---~---------~~~v~~----~-~~~~----~-~~d~  154 (400)
                      .++...-       +++- .|+...-+|-.....+ ...|.   +         .++++.    . +.+.    + .-..
T Consensus       120 ~AiKlAr~y~~~~g~~~r~~ii~~~~~yHG~T~ga~s~tg~~~~~~~~~p~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~  199 (451)
T PRK07678        120 TAFKIARQYHAQKGEPHRYKFISRYRGYHGNTMGALAATGQAQRKYKYEPLAPGFLHVAPPDCYRMPGIESEDIYDLECV  199 (451)
T ss_pred             HHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCHHHHHHCCCHHCCCCCCCCCCCEEECCCCCCCCCCCCCCCCHHHHHHH
T ss_conf             99999999998609997424346267403897234511574310578888888815738984235776665226679999


Q ss_pred             HHHHCCCC----CCCCCEEECCC--CCCCCCCCC-CCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCC-CCCCCCC
Q ss_conf             33100012----21220121135--421000012-3333211122333332011101221100000122332-2211123
Q gi|254780602|r  155 EKLEQAIT----PKTKWLFLNSP--SNPSGVVYS-QNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSN-IVNVEPS  226 (400)
Q Consensus       155 ~~l~~~i~----~~~k~i~l~nP--~NPTG~v~s-~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s-~~~~~~~  226 (400)
                      +++++.+.    +++-+|++ -|  .+ .|.+.+ ++-+++|-++| +++|+++|.||+...|.=.|.-+.. -..+.|+
T Consensus       200 ~~le~~i~~~~~~~iAaii~-EPi~g~-gG~~~p~~~yl~~lr~lc-~~~gillI~DEV~tGfGRtG~~fa~e~~gv~PD  276 (451)
T PRK07678        200 KEIDRVMTWELSETIAAFIM-EPIITG-GGILMPPQDYMKAVHEIC-QKHGALLISDEVICGFGRTGKAFGFMNYGVKPD  276 (451)
T ss_pred             HHHHHHHHHCCCCCEEEEEE-EECCCC-CCCCCCCHHHHHHHHHHE-EECCCEEEECCCCCCCCCCCCCCCHHHCCCCCC
T ss_conf             99999987507886799999-753777-882318879867787741-245955773224027874566500110595277


Q ss_pred             CCCEEEEECCCCCCCCCCC-CCCCCCCCHHHHHHHHHHHC------CCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCC
Q ss_conf             3322574146544322344-54442211012268753100------1222332222222222223467--6432222221
Q gi|254780602|r  227 LYERTLVVNGVSKAYAMTG-LRIGYAAGALSLIKSMIVLQ------GQQTSGACSIAQWAAVEALNGP--QDFVVNNRKI  297 (400)
Q Consensus       227 ~~~~~i~~~S~SK~~~~~G-~RiG~~v~~~~li~~l~~~~------~~~~~~~~~~~q~a~~~~l~~~--~~~~~~~~~~  297 (400)
                           |  -+++|.++ .| +-+|.+++.+++.+.+....      ...+.+.+.+...++.+.|+.-  +..+++.++.
T Consensus       277 -----i--v~~gK~l~-gG~~Plsav~~~~ei~~~~~~~~~~~~~~h~~T~~gnpla~aaa~a~L~~l~~~~l~~~~~~~  348 (451)
T PRK07678        277 -----I--ITMAKGIT-SAYLPLSATAVKKEIYEAFKGKGEYEFFRHINTFGGNPAACALALKNLEIMENENLIERSAQL  348 (451)
T ss_pred             -----E--EEECCCCC-CCCCCCEEEEECHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf             -----2--00133445-777761677762989976357887666434788987989999999999998415099999999


Q ss_pred             CCCCCCCHHHHHHCCCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCC--CCCCEEE
Q ss_conf             10000000245530477603302740899862641023321133224898999999998739799835022--8997289
Q gi|254780602|r  298 FEYRRDLCVAQLQGVPGIRYMIPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSF--GHGPSIR  375 (400)
Q Consensus       298 ~~~~r~~~~~~L~~~~g~~~~~p~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~F--g~~~~iR  375 (400)
                      -+.-++.+.+.+++.+-+.=++.. |+++=+++-.-.....+....  ....++..+ .+.|+++.+.-..  +.++.+|
T Consensus       349 g~~l~~~L~~~~~~~p~i~dVRG~-GLm~gielv~d~~~~~p~~~~--~~~~i~~~~-~~~Glli~~~g~~~~~~~n~lr  424 (451)
T PRK07678        349 GSLLLEQLKEELGEHPLVGDIRGK-GLLVGIELVNDKETKEPADND--KVASVVNAC-KEKGLIIGKNGMTVAGYNNVLT  424 (451)
T ss_pred             HHHHHHHHHHHHHCCCCEEEEEEC-CEEEEEEEECCCCCCCCCCHH--HHHHHHHHH-HHCCCEEECCCCCCCCCCCEEE
T ss_conf             999999999997459988887616-568999985366557879999--999999999-9779888147873257899899


Q ss_pred             EE--EECCHHHHHHHHHHHHHHHHHCC
Q ss_conf             99--62999999999999999998609
Q gi|254780602|r  376 IS--YAVSDAILEEACVRIKRFCHSLQ  400 (400)
Q Consensus       376 is--~~~~~e~l~~al~rl~~~l~~l~  400 (400)
                      ++  +..+++++++++++|.+.|+++|
T Consensus       425 ~~PPL~it~~eid~~~~~l~~al~~v~  451 (451)
T PRK07678        425 LAPPLCISSEELAFVVGTLKTAMERIK  451 (451)
T ss_pred             EECCCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf             978824889999999999999999639


No 211
>PRK06434 cystathionine gamma-lyase; Validated
Probab=99.55  E-value=6.9e-14  Score=104.64  Aligned_cols=221  Identities=14%  Similarity=0.156  Sum_probs=131.8

Q ss_pred             CCCCCC-CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----CCCCCCC
Q ss_conf             699877-89899999999864210133332233233454333322222223322322223333232222----2222222
Q gi|254780602|r   63 KYTAVA-GISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPD----MVALCGG  137 (400)
Q Consensus        63 ~Y~~~~-G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l~~~~~~~~~~Gd~Vlv~~P~y~~y~~----~~~~~g~  137 (400)
                      +|.-++ |.| .++++.+.+...-|    .+.-++++.++.||..++.+++++||+|++.+..|..-..    .+...|.
T Consensus        55 ~y~YsR~gnP-T~~~lE~~la~LEg----~~~a~~~sSGmaAi~~~ll~ll~~Gdhiv~~~~~Yg~T~~l~~~~l~~~Gi  129 (384)
T PRK06434         55 PYIYTRWGNP-TVQAFEEKYAVLEN----AEHALSFSSGMGAITSAILSLIKKGKRILSISDLYGQTFYFFNKVLKTLGI  129 (384)
T ss_pred             CCEECCCCCH-HHHHHHHHHHHHHC----CCCEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf             9225389886-69999999999849----980999768999999999996189998998079827779999988875697


Q ss_pred             CCCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCC
Q ss_conf             22222222223222103331000122122012113542100001233332111223333320111012211000001223
Q gi|254780602|r  138 IPVFVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQF  217 (400)
Q Consensus       138 ~~~~v~~~~~~~~~~d~~~l~~~i~~~~k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~  217 (400)
                      ++.+++.+       +++.++ ...++||+||+-+|.|||..+.+   +++|+++| ++++  ||+|..+.-=.+    .
T Consensus       130 ~v~~vd~~-------~~~~~~-~~~~~tklv~~Esp~NP~l~v~D---i~aia~~A-~~~~--vvVDNTfatP~~----~  191 (384)
T PRK06434        130 HVDYIDTD-------RLNSLD-FDPSNYDLIYAESITNPTLKVPD---IKNVSSFC-HEND--VIVDATFASPYN----Q  191 (384)
T ss_pred             EEEEECCC-------CHHHHH-HCCCCCEEEEEECCCCCCCCCCC---HHHHHHHH-CCCC--EEEECCCCCCCC----C
T ss_conf             27995786-------578896-07468649999889998763156---79999764-1598--477547652013----7


Q ss_pred             CCCCCCCCCCCCEEEEECCCCCCCCCCCCC-CCCCC-CHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             322211123332257414654432234454-44221-1012268753100122233222222222222346764322222
Q gi|254780602|r  218 SNIVNVEPSLYERTLVVNGVSKAYAMTGLR-IGYAA-GALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGPQDFVVNNR  295 (400)
Q Consensus       218 ~s~~~~~~~~~~~~i~~~S~SK~~~~~G~R-iG~~v-~~~~li~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~  295 (400)
                      .++ .+  +   --|++.|.||.++--|=- .|.++ .++++.+++...+.....++++...+.+...|+.    +.-..
T Consensus       192 ~Pl-~~--G---aDivihS~TKYi~GHsDvl~G~v~~~~~~~~~~l~~~~~~~G~~~sP~~a~L~lrGL~T----L~lRm  261 (384)
T PRK06434        192 NPL-DL--G---ADVVIHSATKYISGHSDVVMGVAGTNNKSIFNNLVERRKTLGSNPDPIQAYLALRGLKT----LGLRM  261 (384)
T ss_pred             CCC-CC--C---CCEEEEECCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCC----HHHHH
T ss_conf             831-03--8---98799703520068888668645058899999999998614898986889999826763----99999


Q ss_pred             CCCCCCCCCHHHHHHCCCCCE
Q ss_conf             211000000024553047760
Q gi|254780602|r  296 KIFEYRRDLCVAQLQGVPGIR  316 (400)
Q Consensus       296 ~~~~~~r~~~~~~L~~~~g~~  316 (400)
                      ++-.++...+.+.|++.|.++
T Consensus       262 ~r~~~nA~~vA~~L~~hp~V~  282 (384)
T PRK06434        262 EKHNKNGMELARFLRDSKKIS  282 (384)
T ss_pred             HHHHHHHHHHHHHHHHCCCCC
T ss_conf             999999999999998099933


No 212
>PRK08593 4-aminobutyrate aminotransferase; Provisional
Probab=99.55  E-value=1.4e-13  Score=102.79  Aligned_cols=347  Identities=13%  Similarity=0.109  Sum_probs=179.4

Q ss_pred             CCCCEEECCCCCC--CCC-CCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             6997266565897--498-8999999999998388756998778989999999986421013333223323345433332
Q gi|254780602|r   29 KGIDVLCLTAGEP--DFD-MPENVKYAVVRAMERGETKYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIF  105 (400)
Q Consensus        29 ~g~~ii~l~~G~p--~~~-~p~~i~~a~~~al~~~~~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l~  105 (400)
                      .|+..||+..|.-  .+. -+|.|.+|+++.++.- ..|++..-..+.+..+|+.+.+....+. ...|.++++++++..
T Consensus        43 dG~~yLD~~sg~~~~~lGh~~p~v~~Ai~~ql~~l-~~~~~~~~~~~~~~~la~~L~~~~p~~~-~~~v~f~~SGsEAvE  120 (448)
T PRK08593         43 EGKTYIDLLASASSQNVGHAPPEVVEAIKAQADKF-IHYTPAYMYHEPLVRLAKKLCELAPGDF-EKRVTFGLSGSDAND  120 (448)
T ss_pred             CCCEEEEECCCHHHHHCCCCCHHHHHHHHHHHHCC-CCCCCCCCCCHHHHHHHHHHHHHCCCCC-CCEEEECCCHHHHHH
T ss_conf             96999993523764010489899999999998407-6736663146799999999998578676-637997187578999


Q ss_pred             CCCCCC-CCCC-CCCCCCCCCCCCCCC-CCCCCCC-------------CCCCCCCCC-------CC--CCC-CHHHHHHC
Q ss_conf             222222-3322-322223333232222-2222222-------------222222222-------23--222-10333100
Q gi|254780602|r  106 NALMAT-VNMG-DEVLIPRPYWVSYPD-MVALCGG-------------IPVFVDTQQ-------DD--NFQ-VSPEKLEQ  159 (400)
Q Consensus       106 ~~~~~~-~~~G-d~Vlv~~P~y~~y~~-~~~~~g~-------------~~~~v~~~~-------~~--~~~-~d~~~l~~  159 (400)
                      .++... ...| ..|+...-+|-.-.. .....|.             ..+.+|...       +.  .+. -..+.+++
T Consensus       121 ~AlKlAr~~tgr~~ii~~~~~yHG~T~ga~s~sg~~~~~~~~~~p~~p~~~~vp~p~~~~~~~~~~~~~~~~~~~~~~~~  200 (448)
T PRK08593        121 GIIKFARAYTGRPYIISFTNAYHGSTYGSLSMSAISLNMRKKYGPLLPGFYHIPFPDKYRGMYEEPQANSVEEYLAPLKE  200 (448)
T ss_pred             HHHHHHHHCCCCCEEEEEECCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf             99999975489987999947877687340010478756544568999995780798633454578706799999999999


Q ss_pred             CC----C-CCCCCEEECCCCCCC-CC-CCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC-CCCCCCCCCCCEE
Q ss_conf             01----2-212201211354210-00-012333321112233333201110122110000012233-2221112333225
Q gi|254780602|r  160 AI----T-PKTKWLFLNSPSNPS-GV-VYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFS-NIVNVEPSLYERT  231 (400)
Q Consensus       160 ~i----~-~~~k~i~l~nP~NPT-G~-v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~-s~~~~~~~~~~~~  231 (400)
                      .+    . +++-++++ -|=.-. |. ..+++-++++-++| +++|+++|.||+...+.=.|.-+. .-..+.|+     
T Consensus       201 ~~~~~~~~~~iAAvi~-EPvqg~gG~~~~p~~yl~~lr~lc-~~~gillI~DEV~tGfGRtG~~fa~e~~gv~PD-----  273 (448)
T PRK08593        201 MFEKYVPADEVACIVI-ETIQGDGGLLEPVPGYFEALYKFC-REHGILFAVDDIQQGLGRTGKWSSISHFNITPD-----  273 (448)
T ss_pred             HHHHCCCCCCEEEEEE-ECCCCCCCCCCCCHHHHHHHHHHH-HHCCEEEEEEEEECCCCCCCCCHHHHHCCCCCC-----
T ss_conf             9985178897699999-788788898738878868999999-866806987430017775676035543052888-----


Q ss_pred             EEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCHHHHH
Q ss_conf             74146544322344544422110122687531001222332222222222223467--6432222221100000002455
Q gi|254780602|r  232 LVVNGVSKAYAMTGLRIGYAAGALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGP--QDFVVNNRKIFEYRRDLCVAQL  309 (400)
Q Consensus       232 i~~~S~SK~~~~~G~RiG~~v~~~~li~~l~~~~~~~~~~~~~~~q~a~~~~l~~~--~~~~~~~~~~~~~~r~~~~~~L  309 (400)
                      |+  +++|..+ .|+-+|.+++.+++.+.+.......+.+.+.+...++.+.|+.-  +..+++    .++.-+++.+.|
T Consensus       274 iv--~~gKgl~-gG~Plsav~~~~ei~~~~~~~~h~~T~~Gnpla~aaa~a~L~~i~~~~l~~~----~~~~g~~l~~~L  346 (448)
T PRK08593        274 LM--TFGKSLA-GGMPMSAIVGRKEIMESLEAPAHLFTTGANPVSCEAALATIDMIEDESLLQA----SAEKGEYVRKRF  346 (448)
T ss_pred             EE--EECCCCC-CCCCEEEEEECHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHH----HHHHHHHHHHHH
T ss_conf             67--7730025-8874079987589885217886565789998999999999999974439999----999999999999


Q ss_pred             H----CCCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCCCCEEEEE--EECCHH
Q ss_conf             3----0477603302740899862641023321133224898999999998739799835022899728999--629999
Q gi|254780602|r  310 Q----GVPGIRYMIPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGHGPSIRIS--YAVSDA  383 (400)
Q Consensus       310 ~----~~~g~~~~~p~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~iRis--~~~~~e  383 (400)
                      +    +.|.+.-++..| +++=+++-.-.....+.   ..-..+++..++ ++|+++.+..    ++.+|++  +..+++
T Consensus       347 ~~l~~~~p~v~dVRG~G-L~~giElv~~~~~~~~~---~~~~~~v~~~~~-~~Gll~~~~~----gn~ir~~PpL~it~~  417 (448)
T PRK08593        347 DQWVSKYNFVGDVRGKG-LSIGIDIVSDKKLKTRD---AEAALKICNYCF-EHGVVIIAVA----GNVLRFQPPLVITYE  417 (448)
T ss_pred             HHHHHCCCCEEEECCCC-EEEEEEEEECCCCCCCC---HHHHHHHHHHHH-HCCEEEEECC----CCEEEEECCCCCCHH
T ss_conf             99986299788730255-17899996455557888---899999999999-7890898679----998999789008899


Q ss_pred             HHHHHHHHHHHHHHHCC
Q ss_conf             99999999999998609
Q gi|254780602|r  384 ILEEACVRIKRFCHSLQ  400 (400)
Q Consensus       384 ~l~~al~rl~~~l~~l~  400 (400)
                      ++++++++|++.|.+++
T Consensus       418 eid~~~~~l~~al~~l~  434 (448)
T PRK08593        418 QLDTALNTIEDALTALE  434 (448)
T ss_pred             HHHHHHHHHHHHHHHHH
T ss_conf             99999999999999987


No 213
>PTZ00125 ornithine aminotransferase; Provisional
Probab=99.54  E-value=1.5e-13  Score=102.54  Aligned_cols=336  Identities=12%  Similarity=0.085  Sum_probs=181.8

Q ss_pred             CCCCEEECCCCCC--CCC-CCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             6997266565897--498-8999999999998388756998778989999999986421013333223323345433332
Q gi|254780602|r   29 KGIDVLCLTAGEP--DFD-MPENVKYAVVRAMERGETKYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIF  105 (400)
Q Consensus        29 ~g~~ii~l~~G~p--~~~-~p~~i~~a~~~al~~~~~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l~  105 (400)
                      +|+..||+..|.-  .+. -+|.|.+|+++.++...+  ....-..+..+..++.+....    ..+.|++++++++|..
T Consensus        47 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~l~~--~~~~~~~~~~~~a~~~l~~~~----g~~~v~f~~SGsEA~e  120 (415)
T PTZ00125         47 EGKKYFDFLSAYSAVNQGHCHPKILEALINQAKKLTL--SSRAFYNQKLGEAEKYITNLF----GYDKVLFMNTGAEANE  120 (415)
T ss_pred             CCCEEEEECCCHHHHHHCCCCHHHHHHHHHHHHHCCC--CCCCCCCHHHHHHHHHHHHCC----CCCEEEECCCHHHHHH
T ss_conf             8899878240688634427979999999999965787--767534589999999998554----9988995387588999


Q ss_pred             CCCCCCC---------CCCC-CCCCCCCCCCCCCCCC-CCCCCC---CCCCCCCCCCCCC--CHHHHHHCCCCC--CCCC
Q ss_conf             2222223---------3223-2222333323222222-222222---2222222223222--103331000122--1220
Q gi|254780602|r  106 NALMATV---------NMGD-EVLIPRPYWVSYPDMV-ALCGGI---PVFVDTQQDDNFQ--VSPEKLEQAITP--KTKW  167 (400)
Q Consensus       106 ~~~~~~~---------~~Gd-~Vlv~~P~y~~y~~~~-~~~g~~---~~~v~~~~~~~~~--~d~~~l~~~i~~--~~k~  167 (400)
                      .+++..-         ..+. .|+...-+|-.....+ ...+..   -.+-|+.+.-.+.  .|++.+++.+..  ++-+
T Consensus       121 ~AiklAr~~~~~~~~~~~~r~~ii~~~~~yHG~t~ga~s~~~~~~~~~~~~p~~~~~~~~p~~d~~~l~~~~~~~~~iAA  200 (415)
T PTZ00125        121 TAVKFARRWGYAVKGIPENQAKIIFCNGNFSGRTMGAISASDDPKSYNKFGPFVPGFHKVDYNDLEALEKLLSKDPNVCA  200 (415)
T ss_pred             HHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHCCCCCEEE
T ss_conf             99999989877416777896059997388688844543344574334577888897077046768999999604997689


Q ss_pred             EEECCC-CCCCCCCC-CCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCC-CCCCCCCCCCEEEEECCCCCCCCCC
Q ss_conf             121135-42100001-23333211122333332011101221100000122332-2211123332257414654432234
Q gi|254780602|r  168 LFLNSP-SNPSGVVY-SQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSN-IVNVEPSLYERTLVVNGVSKAYAMT  244 (400)
Q Consensus       168 i~l~nP-~NPTG~v~-s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s-~~~~~~~~~~~~i~~~S~SK~~~~~  244 (400)
                      +++ -| +.-.|.+. +++.+++|.++| +++++++|.||+...+.=.|.-+.. -..+.|+     |+  +++|..+ .
T Consensus       201 vii-EPi~g~gG~~~p~~~yl~~lr~lc-~~~gillI~DEV~tGfGRtG~~fa~e~~gv~PD-----iv--~~gKgl~-g  270 (415)
T PTZ00125        201 FIV-EPIQGEAGVIVPDEGYLKQVYSLC-KKYNVLLVADEVQTGLGRTGKLLAVDHEGVKPD-----IV--LLGKALS-G  270 (415)
T ss_pred             EEE-CCCCCCCCCCCCCHHHHHHHHHHH-HHHCCEEECCCCEECCCCCCCCCCCCCCCCCCC-----EE--EECCCCC-C
T ss_conf             997-465687884269999999999999-984876764522416775676212017897998-----21--0031446-8


Q ss_pred             C-CCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCHHHHHHC---CCCCEEE
Q ss_conf             4-544422110122687531001222332222222222223467--643222222110000000245530---4776033
Q gi|254780602|r  245 G-LRIGYAAGALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGP--QDFVVNNRKIFEYRRDLCVAQLQG---VPGIRYM  318 (400)
Q Consensus       245 G-~RiG~~v~~~~li~~l~~~~~~~~~~~~~~~q~a~~~~l~~~--~~~~~~~~~~~~~~r~~~~~~L~~---~~g~~~~  318 (400)
                      | +-+|.+++.+++.+.+..-....+.+.+.+...++.+.|+.-  ++.++    ..++.-+++.+.|++   .+-+.-+
T Consensus       271 G~~Plsav~~~~~i~~~~~~~~h~~T~~gnpla~Aaa~a~L~~i~~~~l~~----~v~~~G~~l~~~L~~L~~~p~v~~V  346 (415)
T PTZ00125        271 GHLPISAVLANDDVMLTIKPGEHGSTYGGNPLAAAVCKEALEVLSEEKLAE----NAQKLGKYFRKGLKKLKKSPIVEIV  346 (415)
T ss_pred             CCCCCEEEECCHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHH----HHHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf             877620353349999632689988899818999999999999998646999----9999999999999987469976987


Q ss_pred             ECCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCCCCEEEEE--EECCHHHHHHHHHHHHHHH
Q ss_conf             02740899862641023321133224898999999998739799835022899728999--6299999999999999999
Q gi|254780602|r  319 IPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGHGPSIRIS--YAVSDAILEEACVRIKRFC  396 (400)
Q Consensus       319 ~p~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~iRis--~~~~~e~l~~al~rl~~~l  396 (400)
                      +..| +++=+++...         ......+++.++ .+.||++.|+.    ++.||++  +..+++++++++++|++.|
T Consensus       347 RG~G-l~~giel~~~---------~~~~~~~i~~~~-~~~Gll~~~~g----~~vir~~PPL~it~~eid~~l~~l~~aL  411 (415)
T PTZ00125        347 RGKG-LLNAIQFDPN---------VSNVAWDICLKF-KENGLLCKPTH----DDIIRLTPPLTITKEQLDQCLLIIKKVL  411 (415)
T ss_pred             ECCC-EEEEEEEECC---------CCHHHHHHHHHH-HHCCEEEECCC----CCEEEEECCCCCCHHHHHHHHHHHHHHH
T ss_conf             0078-1999998579---------765899999999-95996996079----9989998993389999999999999999


Q ss_pred             HHC
Q ss_conf             860
Q gi|254780602|r  397 HSL  399 (400)
Q Consensus       397 ~~l  399 (400)
                      ++|
T Consensus       412 ~~l  414 (415)
T PTZ00125        412 KSF  414 (415)
T ss_pred             HHC
T ss_conf             961


No 214
>PRK06942 glutamate-1-semialdehyde 2,1-aminomutase; Validated
Probab=99.54  E-value=6.2e-14  Score=104.95  Aligned_cols=347  Identities=16%  Similarity=0.142  Sum_probs=182.0

Q ss_pred             CCCCEEECCCCC--CCCC-CCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             699726656589--7498-8999999999998388756998778989999999986421013333223323345433332
Q gi|254780602|r   29 KGIDVLCLTAGE--PDFD-MPENVKYAVVRAMERGETKYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIF  105 (400)
Q Consensus        29 ~g~~ii~l~~G~--p~~~-~p~~i~~a~~~al~~~~~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l~  105 (400)
                      .|+..||+..|.  ..+. -+|.|.+|+.+.+.++.. |..+   -+..-.+|+.+.+...   ..++|.+++++++|..
T Consensus        48 dGn~YiD~~~g~g~~~lGH~~p~v~~Av~~q~~~~~~-~~~~---~~~~~~lAe~L~~~~P---~~~~v~f~~SGsEA~e  120 (425)
T PRK06942         48 DGKRYIDYIGSWGPMIVGHVHPEVLRAVQRVLADGFS-FGAP---TEAEIEIAEEICKLVP---SIEQVRMVSSGTEATM  120 (425)
T ss_pred             CCCEEEECCHHHHHHHHCCCCHHHHHHHHHHHHHCCC-CCCC---CHHHHHHHHHHHHHCC---CCCEEEEECCHHHHHH
T ss_conf             8998888234288654288979999999999985785-7899---7899999999998588---9885987388799999


Q ss_pred             CCCCCC-CCCC-CCCCCCCCCCCCCCCC-CCCCCC------CC--CCCCCC--CCC---CCCCHHHHHHCCCCC---CCC
Q ss_conf             222222-3322-3222233332322222-222222------22--222222--223---222103331000122---122
Q gi|254780602|r  106 NALMAT-VNMG-DEVLIPRPYWVSYPDM-VALCGG------IP--VFVDTQ--QDD---NFQVSPEKLEQAITP---KTK  166 (400)
Q Consensus       106 ~~~~~~-~~~G-d~Vlv~~P~y~~y~~~-~~~~g~------~~--~~v~~~--~~~---~~~~d~~~l~~~i~~---~~k  166 (400)
                      .+++.- ..+| +.|+...-+|-.+... ....|.      .+  ..+|.+  ...   .| -|++++++.+..   ++-
T Consensus       121 ~AiklAR~~tgr~~ii~~~g~YHG~~~~~~~~~~~~~~~~~~p~~~g~p~~~~~~~~~~~~-nd~~~l~~~~~~~~~~iA  199 (425)
T PRK06942        121 SALRLARGFTGRSRIVKFEGCYHGHADSLLVKAGSGLLTFGNPTSAGVPADVAKHTTVLEY-NNVAALEEAFAAFGGEIA  199 (425)
T ss_pred             HHHHHHCCCCCCCCCCEECCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCHHHHHHHHHHCCCCEE
T ss_conf             9999961034798653123451477410212137876555888656887654576646676-768889999984389668


Q ss_pred             CEEECCC-CCCCCCC-CCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCC
Q ss_conf             0121135-4210000-1233332111223333320111012211000001223322211123332257414654432234
Q gi|254780602|r  167 WLFLNSP-SNPSGVV-YSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMT  244 (400)
Q Consensus       167 ~i~l~nP-~NPTG~v-~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~~~  244 (400)
                      ++++ -| ..-.|.+ .+++-+++|-++| +++++++|.||+...|.....-......+.|+     |+  +++|..+ .
T Consensus       200 AvI~-EPi~g~~G~i~p~~~yl~~lr~lc-~~~gilLI~DEV~TGfR~g~~~a~~~~gv~PD-----i~--t~gK~ig-g  269 (425)
T PRK06942        200 AVIV-EPVAGNMNLVRGTPEFLNALRALC-TKHGAVLIFDEVMCGFRVALGGAQQHYGITPD-----LT--CLGKVIG-G  269 (425)
T ss_pred             EEEE-CCCCCCCCCCCCCHHHHHHHHHHH-CCCCEEEEEECCCCCCCCCCCHHHHHHCCCCC-----EE--EEHHHCC-C
T ss_conf             9995-564477875028989999999986-13783899974625740676538762189987-----99--8710057-9


Q ss_pred             CCCCCCCCCHHHHHHHHHHH---CCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCHHHHHHCCCCCEEE-
Q ss_conf             45444221101226875310---01222332222222222223467--6432222221100000002455304776033-
Q gi|254780602|r  245 GLRIGYAAGALSLIKSMIVL---QGQQTSGACSIAQWAAVEALNGP--QDFVVNNRKIFEYRRDLCVAQLQGVPGIRYM-  318 (400)
Q Consensus       245 G~RiG~~v~~~~li~~l~~~---~~~~~~~~~~~~q~a~~~~l~~~--~~~~~~~~~~~~~~r~~~~~~L~~~~g~~~~-  318 (400)
                      |+-+|.+++.+++++.+...   ....+.+.+++...|+++.|+.-  ++.++...+.-++-++-+.+.+++. |+.+. 
T Consensus       270 G~Pi~Av~g~~eim~~~~~~g~~~h~gTf~gnp~a~AAalatL~~~~~~~~~~~~~~~g~~L~~gl~~~~~~~-g~~~~~  348 (425)
T PRK06942        270 GMPAAAFGGRRDIMAHLAPLGGVYQAGTLSGNPIAVAAGLKTLRLIQAPGFYDALAAQTRRLADGLAAEARAA-GVPFAA  348 (425)
T ss_pred             CCCCEEEEEHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHC-CCCEEE
T ss_conf             8870210259999975067888722789987879999999999998456799999999999999999999977-998899


Q ss_pred             ECCCCEE-EEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHH
Q ss_conf             0274089-986264102332113322489899999999873979983502289972899962999999999999999998
Q gi|254780602|r  319 IPDGAFY-LYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGHGPSIRISYAVSDAILEEACVRIKRFCH  397 (400)
Q Consensus       319 ~p~g~~y-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~iRis~~~~~e~l~~al~rl~~~l~  397 (400)
                      ..-|++| ++..-................-..|...++ +.||.+.|+..   ..++ +|++-++++|++.++..+++++
T Consensus       349 ~g~gs~f~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~Gv~~~p~~~---~~~f-~s~aHt~~did~~l~a~~~a~~  423 (425)
T PRK06942        349 DSIGGMFGLYFTERVPTSFAEVTKSDVERFNRFFHLML-DEGVYFAPSAY---EAGF-VSSTHDDAVLDATLDAARRAFA  423 (425)
T ss_pred             EEECCEEEEEECCCCCCCHHHHHHCCHHHHHHHHHHHH-HCCCCCCCCCH---HCCC-CCCCCCHHHHHHHHHHHHHHHH
T ss_conf             65376479986899999999998554999999999999-78967798524---2176-2303799999999999999997


Q ss_pred             HC
Q ss_conf             60
Q gi|254780602|r  398 SL  399 (400)
Q Consensus       398 ~l  399 (400)
                      +|
T Consensus       424 ~l  425 (425)
T PRK06942        424 AL  425 (425)
T ss_pred             HC
T ss_conf             39


No 215
>COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]
Probab=99.54  E-value=1e-13  Score=103.63  Aligned_cols=332  Identities=16%  Similarity=0.173  Sum_probs=193.6

Q ss_pred             CCCCEEECCCCC--CCCC-CCHHHHHHHHHHHHCC---CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf             699726656589--7498-8999999999998388---756998778989999999986421013333223323345433
Q gi|254780602|r   29 KGIDVLCLTAGE--PDFD-MPENVKYAVVRAMERG---ETKYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKH  102 (400)
Q Consensus        29 ~g~~ii~l~~G~--p~~~-~p~~i~~a~~~al~~~---~~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~  102 (400)
                      +|++-|||..|-  ..+. .+|.+.+|+++.++.=   .+.|.     .+.+.++++.+.+..+   ..|.|++.|++++
T Consensus        40 ~G~~YlDf~~Giav~~lGH~hP~iv~al~~Q~~kl~h~sn~~~-----~~~~~~la~~L~~~s~---~~d~vff~NSGaE  111 (404)
T COG4992          40 QGREYLDFAAGIAVNNLGHCHPALVEALKEQAEKLWHVSNLFY-----NEPQAELAEKLVELSP---FADRVFFCNSGAE  111 (404)
T ss_pred             CCCEEEEECCCEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCC-----CHHHHHHHHHHHHHCC---CCCEEEECCCCHH
T ss_conf             9887666035511102577898999999999977621131337-----8699999999996286---6668997578389


Q ss_pred             CCCCCCCCC---CC-CC-CCCCCCCCCCCCCCCCCCCCCCCCCC----CCCCCCCCCCC--HHHHHHCCCCCCCCCEEEC
Q ss_conf             332222222---33-22-32222333323222222222222222----22222232221--0333100012212201211
Q gi|254780602|r  103 VIFNALMAT---VN-MG-DEVLIPRPYWVSYPDMVALCGGIPVF----VDTQQDDNFQV--SPEKLEQAITPKTKWLFLN  171 (400)
Q Consensus       103 ~l~~~~~~~---~~-~G-d~Vlv~~P~y~~y~~~~~~~g~~~~~----v~~~~~~~~~~--d~~~l~~~i~~~~k~i~l~  171 (400)
                      |...++..-   .. |+ .+|+...=+|-.-...+-..+.++.+    -|+.+.-.+.|  |+++++++|+++|-+|++-
T Consensus       112 A~EaAiKlARk~~~~~~k~~Iia~~nsFHGRT~galS~t~~~ky~~~F~Pl~~g~~~vpfnDi~al~~ai~~~taAvivE  191 (404)
T COG4992         112 ANEAALKLARKYTGDPEKSKIIAFENSFHGRTLGALSATGQPKYRKGFGPLLPGFRHVPFNDIEALEAAIDEDTAAVIVE  191 (404)
T ss_pred             HHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCEEEECCCCHHHCCCCCCCCCCCEECCCCCHHHHHHHHCCCEEEEEEE
T ss_conf             99999999999708888757999747757766233665688422267889999953617899899998736575899982


Q ss_pred             CC-CCCCCCCC-CCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCC-CCCCCCCCCCEEEEECCCCCCCCCCCCCC
Q ss_conf             35-42100001-23333211122333332011101221100000122332-22111233322574146544322344544
Q gi|254780602|r  172 SP-SNPSGVVY-SQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSN-IVNVEPSLYERTLVVNGVSKAYAMTGLRI  248 (400)
Q Consensus       172 nP-~NPTG~v~-s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s-~~~~~~~~~~~~i~~~S~SK~~~~~G~Ri  248 (400)
                       | +-=.|.+. +++.++++-++| ++||+++|.||+-..+.=.|+-+-. -..+.|+       +-++.|.++ .|+-+
T Consensus       192 -PIQGEgGV~~~~~~fl~~lr~lC-d~~g~LLI~DEVQtG~GRTGk~fA~e~~gV~PD-------I~tlaK~Lg-GG~Pi  261 (404)
T COG4992         192 -PIQGEGGVIPAPPEFLKALRELC-DEHGALLILDEVQTGLGRTGKLFAYEHYGVEPD-------ILTLAKALG-GGFPI  261 (404)
T ss_pred             -CCCCCCCCCCCCHHHHHHHHHHH-HHHCEEEEEECCCCCCCCCCHHHHHHHHCCCCC-------EEEEECCCC-CCCCC
T ss_conf             -66688898779989999999999-871929999643138886631789897488877-------788601245-88332


Q ss_pred             CCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCHHHHHHCCCC----CEEEECCC
Q ss_conf             422110122687531001222332222222222223467--643222222110000000245530477----60330274
Q gi|254780602|r  249 GYAAGALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGP--QDFVVNNRKIFEYRRDLCVAQLQGVPG----IRYMIPDG  322 (400)
Q Consensus       249 G~~v~~~~li~~l~~~~~~~~~~~~~~~q~a~~~~l~~~--~~~~~~~~~~~~~~r~~~~~~L~~~~g----~~~~~p~g  322 (400)
                      |.+++.+...+.+..-..-++++-+.+...++.+.|+--  ++.+++    .+++-+++.+.|+++..    ++=++.. 
T Consensus       262 gA~la~~~~~~~~~~G~HgSTfGGNpLacAv~~a~l~~l~~e~ll~~----v~~~g~~~~~~L~~l~~~~~~v~~vRG~-  336 (404)
T COG4992         262 GAMLATEEIASAFTPGDHGSTFGGNPLACAVALAVLEVLLEEGLLEN----VREKGEYLLQRLRELKRRYPLVKEVRGR-  336 (404)
T ss_pred             EEEEECHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHCCCCEEEEECC-
T ss_conf             35577426662478876567778679999999999999800308999----9999999999999975127721224215-


Q ss_pred             CEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCCCCEEEEE--EECCHHHHHHHHHHHHHHHHHC
Q ss_conf             0899862641023321133224898999999998739799835022899728999--6299999999999999999860
Q gi|254780602|r  323 AFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGHGPSIRIS--YAVSDAILEEACVRIKRFCHSL  399 (400)
Q Consensus       323 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~iRis--~~~~~e~l~~al~rl~~~l~~l  399 (400)
                      |+.+=+.+....           ...+++..+ .++||++.+..    ++-+|+.  +..++|+++++++||++.++..
T Consensus       337 GLmiGiel~~~~-----------~a~~~~~~~-~~~gvL~~~a~----~~ViR~~PpL~i~~eei~~~~~~l~~al~~~  399 (404)
T COG4992         337 GLMIGIELKEPY-----------RARDIVRAL-REEGVLVLPAG----PNVIRFLPPLVITEEEIDEALDALERALAAA  399 (404)
T ss_pred             EEEEEEEECCCC-----------CHHHHHHHH-HHCCEEEECCC----CCEEEECCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             049999944764-----------579999999-97896996078----8848845875288999999999999999965


No 216
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=99.54  E-value=4.6e-14  Score=105.70  Aligned_cols=228  Identities=21%  Similarity=0.294  Sum_probs=131.1

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----CCCCCCC
Q ss_conf             569987789899999999864210133332233233454333322222223322322223333232222----2222222
Q gi|254780602|r   62 TKYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPD----MVALCGG  137 (400)
Q Consensus        62 ~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l~~~~~~~~~~Gd~Vlv~~P~y~~y~~----~~~~~g~  137 (400)
                      +-|+-. |. +.|+++.+.+...-    ..++.+.++.+..||..++.+++++||+|+++...|..-..    ..+..|.
T Consensus        55 ~~Y~R~-~n-PT~~~lE~~~a~LE----g~~~~~afsSGmaAI~~~~l~ll~~GD~vl~~~~~YG~t~~~~~~~l~~~gi  128 (396)
T COG0626          55 YDYSRT-GN-PTRDALEEALAELE----GGEDAFAFSSGMAAISTALLALLKAGDHVLLPDDLYGGTYRLFEKILQKFGV  128 (396)
T ss_pred             CCCCCC-CC-CCHHHHHHHHHHHH----CCCCEEEECCCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHCCE
T ss_conf             514057-89-63799999999860----9883799537399999999983579998984577643299999999985685


Q ss_pred             CCCCCCCCCCCCCCCHHHHHHCCCC-CCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCC
Q ss_conf             2222222222322210333100012-212201211354210000123333211122333332011101221100000122
Q gi|254780602|r  138 IPVFVDTQQDDNFQVSPEKLEQAIT-PKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQ  216 (400)
Q Consensus       138 ~~~~v~~~~~~~~~~d~~~l~~~i~-~~~k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~  216 (400)
                      ++.+++..       +.+++.+++. ++||+|++-+|.|||-.+.+   +.+|+++ ++.+++.+|.|+.+..-+|.   
T Consensus       129 ~~~~~d~~-------~~~~~~~~~~~~~tk~v~lEtPsNP~l~v~D---I~~i~~~-A~~~g~~vvVDNTfatP~~q---  194 (396)
T COG0626         129 EVTFVDPG-------DDEALEAAIKEPNTKLVFLETPSNPLLEVPD---IPAIARL-AKAYGALVVVDNTFATPVLQ---  194 (396)
T ss_pred             EEEEECCC-------CHHHHHHHHCCCCCEEEEEECCCCCCCCCCC---HHHHHHH-HHHCCCEEEEECCCCCCCCC---
T ss_conf             99997899-------7588998744668349999679996305556---9999999-98649889998896622016---


Q ss_pred             CCCCCCCCCCCCCEEEEECCCCCCCCCCC-CCCCCCCCHHHHHHHHH-HHCC-CCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             33222111233322574146544322344-54442211012268753-1001-222332222222222223467643222
Q gi|254780602|r  217 FSNIVNVEPSLYERTLVVNGVSKAYAMTG-LRIGYAAGALSLIKSMI-VLQG-QQTSGACSIAQWAAVEALNGPQDFVVN  293 (400)
Q Consensus       217 ~~s~~~~~~~~~~~~i~~~S~SK~~~~~G-~RiG~~v~~~~li~~l~-~~~~-~~~~~~~~~~q~a~~~~l~~~~~~~~~  293 (400)
                       .+ +.+  +   --|+++|.+|.++--+ .=.|.++++.+.+.... .... ++...++....+.++..|+   . +.-
T Consensus       195 -~P-L~~--G---aDIVvhSaTKyl~GHsDvl~G~v~~~~~~~~~~~~~~~~~~~G~~l~p~dA~l~lRGlk---T-L~~  263 (396)
T COG0626         195 -RP-LEL--G---ADIVVHSATKYLGGHSDVLGGVVLTPNEELYELLFFAQRANTGAVLSPFDAWLLLRGLR---T-LAL  263 (396)
T ss_pred             -CH-HHH--C---CCEEEEECCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCC---H-HHH
T ss_conf             -85-550--9---97899854333367735041688448689999999998865278788799999981715---3-999


Q ss_pred             CCCCCCCCCCCHHHHHHCCCCCE-EEEC
Q ss_conf             22211000000024553047760-3302
Q gi|254780602|r  294 NRKIFEYRRDLCVAQLQGVPGIR-YMIP  320 (400)
Q Consensus       294 ~~~~~~~~r~~~~~~L~~~~g~~-~~~p  320 (400)
                      ..+.-.++...+.+.|++.|.++ +.-|
T Consensus       264 Rm~~~~~nA~~IA~~L~~~p~V~~V~yP  291 (396)
T COG0626         264 RMERHNENALKIAEFLADHPKVKKVYYP  291 (396)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf             9999999899999998629976899899


No 217
>PRK09044 consensus
Probab=99.53  E-value=1.9e-13  Score=101.99  Aligned_cols=334  Identities=14%  Similarity=0.138  Sum_probs=182.4

Q ss_pred             CCCCEEECCCCCC--CCC-CCHHHHHHHHHHHHCCCCCCCCCCCC-HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf             6997266565897--498-89999999999983887569987789-8999999998642101333322332334543333
Q gi|254780602|r   29 KGIDVLCLTAGEP--DFD-MPENVKYAVVRAMERGETKYTAVAGI-SPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVI  104 (400)
Q Consensus        29 ~g~~ii~l~~G~p--~~~-~p~~i~~a~~~al~~~~~~Y~~~~G~-~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l  104 (400)
                      .|+..||+..|.-  .+. -+|.|.+|+++.++.-.  |....+. .+.+..+|+.+......  +-+.+++++++++|.
T Consensus        40 dG~~ylD~~sg~~~~~lGh~~p~v~~Ai~~Q~~~l~--~~~~~~~~~~~~~~la~~L~~~~p~--~l~~v~f~~SGsEAv  115 (418)
T PRK09044         40 DGRELVDGVASWWTACHGYNHPHIAEAVREQLDRMP--HVMFGGLAHEPAYRLASRLAAILPG--DLERVFFSDSGSVAV  115 (418)
T ss_pred             CCCEEEECCCCHHHHCCCCCCHHHHHHHHHHHHHCC--CCCCCCCCCHHHHHHHHHHHHHCCC--CCCEEEEECCHHHHH
T ss_conf             999998902277965226898999999999997588--8345874677999999999985788--758698628678999


Q ss_pred             CCCCCCC-------CCCC-CCCCCCCCCCCCCCCC-CCCCCC----CCCCCCCCCCCC---C---CCHHHHHHCCC---C
Q ss_conf             2222222-------3322-3222233332322222-222222----222222222232---2---21033310001---2
Q gi|254780602|r  105 FNALMAT-------VNMG-DEVLIPRPYWVSYPDM-VALCGG----IPVFVDTQQDDN---F---QVSPEKLEQAI---T  162 (400)
Q Consensus       105 ~~~~~~~-------~~~G-d~Vlv~~P~y~~y~~~-~~~~g~----~~~~v~~~~~~~---~---~~d~~~l~~~i---~  162 (400)
                      ..+++..       ..+| ..|+...-+|-..... ....+.    ...+-+..++.-   +   .-+.+.++..+   .
T Consensus       116 E~AiKlA~~y~~~r~~tgr~~ii~~~~~yHG~T~ga~s~~~~~~~~~~~~~~~~p~~~~~~~p~~~~~~~~l~~~~~~~~  195 (418)
T PRK09044        116 EVAMKMAVQYWLNRGERGRTKFLAFRGGYHGDTLATMAVCDPEEGMHSLFAGVLPEQVIADLPRDAASEAALDALLERHG  195 (418)
T ss_pred             HHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHCC
T ss_conf             99999999999862456776289961877786666621157755766777898997614579998678999999997579


Q ss_pred             CCCCCEEECCC--CCCCCCCC-CCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC-CCCCCCCCCCCEEEEECCCC
Q ss_conf             21220121135--42100001-2333321112233333201110122110000012233-22211123332257414654
Q gi|254780602|r  163 PKTKWLFLNSP--SNPSGVVY-SQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFS-NIVNVEPSLYERTLVVNGVS  238 (400)
Q Consensus       163 ~~~k~i~l~nP--~NPTG~v~-s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~-s~~~~~~~~~~~~i~~~S~S  238 (400)
                      +++-++++ -|  ++-.|.+. +++.+++|-++| ++||+++|.||+...+.=.|.-+. ....+.|+     |+  +++
T Consensus       196 ~~iAavi~-EP~iqg~gG~~~~~~~yl~~lr~lc-~~~gillI~DEV~tG~GRtG~~fa~~~~gv~PD-----iv--t~g  266 (418)
T PRK09044        196 GEIAAILV-EPLVQGAGGMLFHDPEVLRRLRRLA-DRHGLLLIFDEIFTGFGRTGTMFAFEQAGVVPD-----IV--TLS  266 (418)
T ss_pred             CCEEEEEE-ECCCCCCCCCCCCCHHHHHHHHHHH-HHCCCCEECCCCCCCCCCCCCCCHHHHCCCCCC-----EE--EEC
T ss_conf             97789999-4663578987489889999999999-874986772122036876678532332595887-----24--302


Q ss_pred             CCCCCCC-CCCCCCCCHHHHHHHHHHH------CCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCHHHHH
Q ss_conf             4322344-5444221101226875310------01222332222222222223467--6432222221100000002455
Q gi|254780602|r  239 KAYAMTG-LRIGYAAGALSLIKSMIVL------QGQQTSGACSIAQWAAVEALNGP--QDFVVNNRKIFEYRRDLCVAQL  309 (400)
Q Consensus       239 K~~~~~G-~RiG~~v~~~~li~~l~~~------~~~~~~~~~~~~q~a~~~~l~~~--~~~~~~~~~~~~~~r~~~~~~L  309 (400)
                      |.++ .| +-+|.+++.+++.+.+..-      ....+.+.+.+...++.+.|+.-  ++.+++    .+++-+++.+.|
T Consensus       267 Kgl~-gG~~Plsav~~~~~i~~~~~~~~~~~~~~hg~T~~gnpl~cAaala~L~~i~~~~l~~~----~~~~g~~l~~~L  341 (418)
T PRK09044        267 KALT-GGTLPLAATVASRRVFEAFWSDDPGHALMHGPTYMGNPLACAAANASLDLFEDEPRLEQ----VAAIEAQLRAGL  341 (418)
T ss_pred             HHCC-CCCCCCEEEEECHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHH----HHHHHHHHHHHH
T ss_conf             0014-88776102355399999750379875502178888998999999999999973479999----999999999999


Q ss_pred             H---CCCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCCCCEEEEE--EECCHHH
Q ss_conf             3---0477603302740899862641023321133224898999999998739799835022899728999--6299999
Q gi|254780602|r  310 Q---GVPGIRYMIPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGHGPSIRIS--YAVSDAI  384 (400)
Q Consensus       310 ~---~~~g~~~~~p~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~iRis--~~~~~e~  384 (400)
                      +   +.+.+.-++..|.| .=+++.+           ......+..+++ +.||.+.|.     .+.+|++  +..++++
T Consensus       342 ~~~~~~~~v~~VRG~Glm-~~iel~~-----------~~~~~~~~~~~~-~~Gv~v~~~-----gn~irl~PpL~it~~e  403 (418)
T PRK09044        342 EPCRDLPGVVDVRVLGAI-GVVELER-----------IPPLDDLRARFV-DRGVWIRPF-----RNIVYLTPAFTIAEDD  403 (418)
T ss_pred             HHHCCCCCEEEEEECCEE-EEEEECC-----------CCCHHHHHHHHH-HCCCEEEEC-----CCEEEEECCCCCCHHH
T ss_conf             975369977988005579-9999368-----------576999999999-789779745-----9999997995789999


Q ss_pred             HHHHHHHHHHHHHH
Q ss_conf             99999999999986
Q gi|254780602|r  385 LEEACVRIKRFCHS  398 (400)
Q Consensus       385 l~~al~rl~~~l~~  398 (400)
                      +++++++|++.+..
T Consensus       404 id~~~~~l~~~l~E  417 (418)
T PRK09044        404 LARLTAAIRQVVAE  417 (418)
T ss_pred             HHHHHHHHHHHHHC
T ss_conf             99999999999857


No 218
>PRK08360 4-aminobutyrate aminotransferase; Provisional
Probab=99.53  E-value=2.1e-13  Score=101.73  Aligned_cols=347  Identities=14%  Similarity=0.141  Sum_probs=182.2

Q ss_pred             HCCCCEEECCCCC--CCCC-CCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf             8699726656589--7498-899999999999838875699877898999999998642101333322332334543333
Q gi|254780602|r   28 SKGIDVLCLTAGE--PDFD-MPENVKYAVVRAMERGETKYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVI  104 (400)
Q Consensus        28 ~~g~~ii~l~~G~--p~~~-~p~~i~~a~~~al~~~~~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l  104 (400)
                      ..|+..||+..|-  ..+. -+|.|.+|+++.++...+ +......+.-...+|+.+.+...  .+-+.+.+++++++|.
T Consensus        38 ~dG~~yLD~~sg~~~~~lGH~~p~v~~Ai~~q~~~l~~-~~~~~~~~~~~~~lae~L~~~~p--~~~~~v~f~~SGSEAv  114 (443)
T PRK08360         38 IEGKEYIDFLSDAAVQNVGHNNPRVVKAIKEQADKLIH-ASYIYAFPVEPLLLAEKLAEIAP--IDNPKVSFGLSGGDAN  114 (443)
T ss_pred             CCCCEEEECCCCHHHHHHCCCCHHHHHHHHHHHHHCCC-CCCCCCCCHHHHHHHHHHHHHCC--CCCCEEEEECCHHHHH
T ss_conf             97699888122578642437969999999999863687-35775576489999999998579--9867599748678899


Q ss_pred             CCCCCCC-CCCC-CCCCCCCCCCCCCCC-CCCCCCC------------CCCCCCCCC---------CCCCCCH-HHHHHC
Q ss_conf             2222222-3322-322223333232222-2222222------------222222222---------2322210-333100
Q gi|254780602|r  105 FNALMAT-VNMG-DEVLIPRPYWVSYPD-MVALCGG------------IPVFVDTQQ---------DDNFQVS-PEKLEQ  159 (400)
Q Consensus       105 ~~~~~~~-~~~G-d~Vlv~~P~y~~y~~-~~~~~g~------------~~~~v~~~~---------~~~~~~d-~~~l~~  159 (400)
                      ..++... ...| ..|+...-+|-.... .....|.            .+.++|...         ......+ .+.+++
T Consensus       115 E~AlKlAr~~tgr~~ii~~~~syHG~T~gals~tg~~~~~~~~~~~~~~~~~vp~p~~~r~~~~~~~~~~~~~~~~~l~~  194 (443)
T PRK08360        115 DGAIKFARAYTKRRKILSYMRSYYGSTYGAMSLTGLDFEVRAIVGELSDVHYIPYPNCYRCPFGKEPGSCKMECVEYLKE  194 (443)
T ss_pred             HHHHHHHHHHCCCCEEEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf             99999988762997387404665768601033137754545567899996681798643576788852136999999999


Q ss_pred             CCC-----CCCCCEEECCC-CCCCCCC-CCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC-CCCCCCCCCCCEE
Q ss_conf             012-----21220121135-4210000-12333321112233333201110122110000012233-2221112333225
Q gi|254780602|r  160 AIT-----PKTKWLFLNSP-SNPSGVV-YSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFS-NIVNVEPSLYERT  231 (400)
Q Consensus       160 ~i~-----~~~k~i~l~nP-~NPTG~v-~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~-s~~~~~~~~~~~~  231 (400)
                      .+.     +++-++++ -| +.-.|.+ .+++-+++|.++| +++|+++|.||+...|.=.|.-+. .-..+.|+     
T Consensus       195 ~~~~~~~~~~iAAvii-EPvqG~gG~~~pp~~yl~~lr~lc-~~~gillI~DEV~tGfGRtG~~fa~e~~gv~PD-----  267 (443)
T PRK08360        195 KFEGEVYAEGVAALFA-EPIQGDSGMVVPPENYFKKVKKIL-DEHGILLVVDEVQSGLGRTGKWFAIEHFGVEPD-----  267 (443)
T ss_pred             HHHHCCCCCCEEEEEE-CCCCCCCCCEECCHHHHHHHHHHH-HHCCCEEEEECCCCCCCCCCHHHHHHCCCCCCC-----
T ss_conf             9862036687579998-676788841868889976898877-765907985113038765440557645796986-----


Q ss_pred             EEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCHHHHH
Q ss_conf             74146544322344544422110122687531001222332222222222223467--6432222221100000002455
Q gi|254780602|r  232 LVVNGVSKAYAMTGLRIGYAAGALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGP--QDFVVNNRKIFEYRRDLCVAQL  309 (400)
Q Consensus       232 i~~~S~SK~~~~~G~RiG~~v~~~~li~~l~~~~~~~~~~~~~~~q~a~~~~l~~~--~~~~~~~~~~~~~~r~~~~~~L  309 (400)
                      |++  ++|.++ .|+-+|.+++.+++.+.+.......+.+.+++...++.+.|+.-  ++.+++    .+++-+++.+.|
T Consensus       268 iv~--~gKgl~-~G~Pisav~~~~ei~~~~~~~~h~~T~~gnpl~caaa~a~L~~i~~~~l~~~----~~~~G~~l~~~L  340 (443)
T PRK08360        268 IIT--LGKPLG-GGLPISATIGRAEIMDSLPPLSHAFTLSGNPTASRAALAVIEEIEEKDLLKR----AEKLGNYTKKRL  340 (443)
T ss_pred             EEE--ECCCCC-CCCCCCCCCCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHH----HHHHHHHHHHHH
T ss_conf             577--634445-7888623111498985048876566878997999999999999986359999----999999999999


Q ss_pred             HCC----CCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCCCCEEEEE--EECCHH
Q ss_conf             304----77603302740899862641023321133224898999999998739799835022899728999--629999
Q gi|254780602|r  310 QGV----PGIRYMIPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGHGPSIRIS--YAVSDA  383 (400)
Q Consensus       310 ~~~----~g~~~~~p~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~iRis--~~~~~e  383 (400)
                      +++    +-+.-.+..|-|+ =+++-+.......   .......++..++ +.|+++.+.    .++.+|++  +..+++
T Consensus       341 ~~l~~~~p~i~dVRG~Gl~~-gie~v~d~~~~~~---~~~~~~~i~~~~~-~~Glli~~~----~~~~i~~~PPL~it~~  411 (443)
T PRK08360        341 EEMKEKHELIGDVRGLGLMI-GVDLVKDRETKER---AYEETKKVVWRAF-ELGLIVTFF----QGNVLRIEPPLTIEEE  411 (443)
T ss_pred             HHHHHHCCCEEEECCCCEEE-EEEEECCCCCCCC---CHHHHHHHHHHHH-HCCCEEEEC----CCCEEEEECCCCCCHH
T ss_conf             99887189888520364699-9998127765544---5799999999999-689388116----9998999799128999


Q ss_pred             HHHHHHHHHHHHHHHCC
Q ss_conf             99999999999998609
Q gi|254780602|r  384 ILEEACVRIKRFCHSLQ  400 (400)
Q Consensus       384 ~l~~al~rl~~~l~~l~  400 (400)
                      ++++++++|.+.|+.++
T Consensus       412 eid~~~~~l~~al~ev~  428 (443)
T PRK08360        412 VLDEGLDILEEAIEDVE  428 (443)
T ss_pred             HHHHHHHHHHHHHHHHH
T ss_conf             99999999999999998


No 219
>TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase; InterPro: IPR011282   This entry represents a narrowly defined clade of animal and bacterial (almost exclusively proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homologue from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function.; GO: 0008890 glycine C-acetyltransferase activity.
Probab=99.53  E-value=8.7e-14  Score=104.04  Aligned_cols=327  Identities=13%  Similarity=0.148  Sum_probs=204.9

Q ss_pred             HCC--CCEEECCCCC-CCCCCCHHHHHHHHHHHHCCCCCCCC------CC-CCHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf             869--9726656589-74988999999999998388756998------77-89899999999864210133332233233
Q gi|254780602|r   28 SKG--IDVLCLTAGE-PDFDMPENVKYAVVRAMERGETKYTA------VA-GISPLREAIVEKFRRDNDLHYTSDQIIVG   97 (400)
Q Consensus        28 ~~g--~~ii~l~~G~-p~~~~p~~i~~a~~~al~~~~~~Y~~------~~-G~~~lR~aia~~~~~~~g~~~~~e~I~it   97 (400)
                      .+|  ..||||...| -.+.-+|.|++|.++++++--+|-.+      +| =+.+|-+.||+|+..       +|-|+. 
T Consensus        35 ~dGv~~~vlNfCANNYLGLs~HP~~I~AA~~Al~~~GfGlsSVRFICGTQd~HK~LE~~iA~F~~~-------EDtILY-  106 (395)
T TIGR01822        35 ADGVSREVLNFCANNYLGLSDHPDVIQAAKDALDEHGFGLSSVRFICGTQDLHKELEAKIAAFLGT-------EDTILY-  106 (395)
T ss_pred             ECCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHCC-------CCHHHH-
T ss_conf             558642314431000056467557999999988743895134321216743568999999997165-------304454-


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCHHHHHHCCCCC----CCCCEEE
Q ss_conf             45433332222222332232222333323222222---2222222222222223222103331000122----1220121
Q gi|254780602|r   98 TGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDMV---ALCGGIPVFVDTQQDDNFQVSPEKLEQAITP----KTKWLFL  170 (400)
Q Consensus        98 ~G~~~~l~~~~~~~~~~Gd~Vlv~~P~y~~y~~~~---~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~----~~k~i~l  170 (400)
                      +.+-.|..=+|-.++.+.|-||=-.   -+|.+++   ++|-++-+.|.    +   .|+++|++.+++    ..|..++
T Consensus       107 ~scFDANgGlFE~LLg~eDAiiSDa---LNHASIIDGvRLCKAkrYRY~----~---~dm~dLe~~L~~A~~~Gar~~Li  176 (395)
T TIGR01822       107 ASCFDANGGLFETLLGEEDAIISDA---LNHASIIDGVRLCKAKRYRYA----N---NDMADLEAQLKEAQAAGARHRLI  176 (395)
T ss_pred             HHHHHCCCCCCHHHCCCCCCCHHHH---HCCCHHHHHHHHHHHHHHHHH----C---CCHHHHHHHHHHHHHCCCCEEEE
T ss_conf             5666305542201047544221022---243102300354223343230----5---88889999999999738958998


Q ss_pred             CCCCCCCCCCCC----CCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCC
Q ss_conf             135421000012----3333211122333332011101221100000122332221112333225741465443223445
Q gi|254780602|r  171 NSPSNPSGVVYS----QNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTGL  246 (400)
Q Consensus       171 ~nP~NPTG~v~s----~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~~~G~  246 (400)
                      .+    -| |+|    -..|++|+.+| ++||.+|..||+|+ .-|=|..-.....+..-+....|+.+|+.|.+|  |-
T Consensus       177 ~t----DG-vFSMDG~iA~L~~i~~LA-~~Y~ALv~~DecHA-~GflG~~GRG~~E~~gv~g~vdI~tgTLGKAlG--GA  247 (395)
T TIGR01822       177 AT----DG-VFSMDGTIAPLDEICDLA-DKYDALVMVDECHA-TGFLGATGRGTAELLGVMGRVDIITGTLGKALG--GA  247 (395)
T ss_pred             EE----CC-EEECCCCEECHHHHHHHH-HHCCCEEEEECCCC-CCCCCCCCCCHHHHCCCCCCEEEEECCHHHHHC--CC
T ss_conf             64----66-020687310767899999-85598788744334-233278998614213767525774054334511--45


Q ss_pred             CCCCCCCHHHHHHHHHHH-CCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEECCCCE
Q ss_conf             444221101226875310-01222332222222-2222234676432222221100000002455304776033027408
Q gi|254780602|r  247 RIGYAAGALSLIKSMIVL-QGQQTSGACSIAQW-AAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQGVPGIRYMIPDGAF  324 (400)
Q Consensus       247 RiG~~v~~~~li~~l~~~-~~~~~~~~~~~~q~-a~~~~l~~~~~~~~~~~~~~~~~r~~~~~~L~~~~g~~~~~p~g~~  324 (400)
                      --||-.+++++++-|+.. +-|..++.-+|.-. +.+++|+-- +-=.++++.+.+|-+++.+.|... |+++.+.+-..
T Consensus       248 ~GGfTta~~evv~lLRQRsRPYLFSNslpP~vvga~~~vl~~l-~~s~~l~~~L~~n~~~FR~~m~Aa-GFd~~p~~hpI  325 (395)
T TIGR01822       248 SGGFTTARKEVVELLRQRSRPYLFSNSLPPAVVGASIKVLDML-EGSNELRDRLAENTRYFRERMEAA-GFDVKPAEHPI  325 (395)
T ss_pred             CCCCCCCCHHHHHHHHHCCCCCCHHCCCCHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHHHHHHHHC-CCCCCCCCCCC
T ss_conf             6764377467999853126511000463068999999999998-420579999999999878753424-74017898851


Q ss_pred             EEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCC--CCCE--EEEEE--ECCHHHHHHHHHHHHHHHH
Q ss_conf             998626410233211332248989999999987397998350228--9972--89996--2999999999999999998
Q gi|254780602|r  325 YLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFG--HGPS--IRISY--AVSDAILEEACVRIKRFCH  397 (400)
Q Consensus       325 y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg--~~~~--iRis~--~~~~e~l~~al~rl~~~l~  397 (400)
                           ++      .+..+. ..+.+|+++||++ ||.|+ |-.|-  ++|-  ||+=+  +-++|.|++|++.+.+.=+
T Consensus       326 -----~p------vMlyDA-~~Aq~~A~~Ll~~-GiYv~-GFfYPVVPKGqARIRvQ~SA~H~~e~l~~a~~AF~~~G~  390 (395)
T TIGR01822       326 -----IP------VMLYDA-KLAQRFAERLLEE-GIYVI-GFFYPVVPKGQARIRVQISAVHTEEQLDRAVEAFTRVGR  390 (395)
T ss_pred             -----EE------EECCCH-HHHHHHHHHHHHC-CEEEE-EEEECCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHH
T ss_conf             -----02------321147-8999999999877-92899-745264378861244410256898899999999999878


No 220
>PRK07323 consensus
Probab=99.53  E-value=1.5e-13  Score=102.53  Aligned_cols=345  Identities=14%  Similarity=0.124  Sum_probs=181.0

Q ss_pred             CCCCEEECCCCC--CCCC-CCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             699726656589--7498-8999999999998388756998778989999999986421013333223323345433332
Q gi|254780602|r   29 KGIDVLCLTAGE--PDFD-MPENVKYAVVRAMERGETKYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIF  105 (400)
Q Consensus        29 ~g~~ii~l~~G~--p~~~-~p~~i~~a~~~al~~~~~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l~  105 (400)
                      .|+..||+..|-  ..+. -+|.|.+|+++.++...+ ++...-..+.+..+|+.+.+....+-...+|.+++++++|..
T Consensus        56 dG~~ylD~~sg~~~~~lGh~~p~i~~Ai~~q~~~l~~-~~~~~~~~~~~~~lae~L~~~~~~~~~~~rv~f~~SGsEAvE  134 (443)
T PRK07323         56 DGNVFLDFTAGIAVTTTGHAHPHVVRAVQEQAERFAH-VCGTDFYYEPTTSLAERLVGHAPFPGEKWRVFFGNSGAESVE  134 (443)
T ss_pred             CCCEEEECCCCHHHCEECCCCHHHHHHHHHHHHHCCC-CCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHH
T ss_conf             8899999250877443168989999999999975556-554655778999999999984789766568998377468999


Q ss_pred             CCCCCC-CCCC-CCCCCCCCCCCCCCC-CCCCCCC---------------CCCCCCCC--C------CCCCCCHHHHHHC
Q ss_conf             222222-3322-322223333232222-2222222---------------22222222--2------2322210333100
Q gi|254780602|r  106 NALMAT-VNMG-DEVLIPRPYWVSYPD-MVALCGG---------------IPVFVDTQ--Q------DDNFQVSPEKLEQ  159 (400)
Q Consensus       106 ~~~~~~-~~~G-d~Vlv~~P~y~~y~~-~~~~~g~---------------~~~~v~~~--~------~~~~~~d~~~l~~  159 (400)
                      .++... ...| ..|+...-+|-.... .....|.               ..++.|..  .      +....-..+.+++
T Consensus       135 ~AiklAr~~tgr~~iis~~~~yHG~T~ga~s~tg~~~~~~~~~~p~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~le~  214 (443)
T PRK07323        135 AAIKLARYHTGRSHIIAFLGAFHGRTYGAMSLTGSKTVYRQGFGPLLPGVSHIPYPNPFRPPLGSTPEECGHAVLDHLES  214 (443)
T ss_pred             HHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf             99999998469987999707878987642431288300013568889990670687632343468726789999999999


Q ss_pred             CCC-----CCCCCEEECCC-CCCCCCC-CCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC-CCCCCCCCCCCEE
Q ss_conf             012-----21220121135-4210000-12333321112233333201110122110000012233-2221112333225
Q gi|254780602|r  160 AIT-----PKTKWLFLNSP-SNPSGVV-YSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFS-NIVNVEPSLYERT  231 (400)
Q Consensus       160 ~i~-----~~~k~i~l~nP-~NPTG~v-~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~-s~~~~~~~~~~~~  231 (400)
                      .+.     +++.++++ -| +--.|.+ .+++-++++-++| +++|+++|.||+...+.=.|.-+. .-..+.|+     
T Consensus       215 ~~~~~~~~~~iAAvi~-EPiqg~gG~~~pp~~yl~~lr~lc-~~~~illI~DEV~tGfGRtG~~fa~e~~gv~PD-----  287 (443)
T PRK07323        215 LFQTVLPAEEVAAIVV-EPIQGEGGYIVPPDGFLPRLRAIC-DRHGILLVVDEVQAGMGRTGRLFAIEHWGVQPD-----  287 (443)
T ss_pred             HHHHHCCCCCEEEEEE-ECCCCCCCCCCCCHHHHHHHHHHH-HHCCCEEECCCCCCCCCCCCCCCHHHCCCCCCC-----
T ss_conf             9985178997899998-687788898569989999999999-984975886742327886664302014697888-----


Q ss_pred             EEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHC
Q ss_conf             74146544322344544422110122687531001222332222222222223467643222222110000000245530
Q gi|254780602|r  232 LVVNGVSKAYAMTGLRIGYAAGALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQG  311 (400)
Q Consensus       232 i~~~S~SK~~~~~G~RiG~~v~~~~li~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~~~~~L~~  311 (400)
                      |++  ++|.++ .|+-+|.+++.+++.......+.. +.+.+.+...++.+.|+--++   +..+..+++-+++.+.|++
T Consensus       288 iv~--~gKglg-~G~Plsav~~~~~i~~~~~g~h~~-T~~gnpl~~aaa~a~L~iie~---~l~~~v~~~g~~l~~~L~~  360 (443)
T PRK07323        288 IIT--LAKGIA-SGMPLGAILAREELMTWPPGSHGT-TFGGNPVAAAAAHATLDLLEG---GLMENAARMGEFLLAELRQ  360 (443)
T ss_pred             EEE--ECHHHC-CCCCEEEEEECHHHHCCCCCCCCC-CCCCCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_conf             898--713432-887318999857861365677653-658974899999999999987---7999999999999999999


Q ss_pred             C----CCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCCCCEEEEE--EECCHHHH
Q ss_conf             4----77603302740899862641023321133224898999999998739799835022899728999--62999999
Q gi|254780602|r  312 V----PGIRYMIPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGHGPSIRIS--YAVSDAIL  385 (400)
Q Consensus       312 ~----~g~~~~~p~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~iRis--~~~~~e~l  385 (400)
                      +    |-+.-++..| +++=+++-+.......     .-...++..+ .++|+++.|+.    ++.||++  +..+++++
T Consensus       361 l~~~~p~v~~vRG~G-L~~giel~~~~~~~~~-----~~~~~i~~~~-~~~Gll~~~~g----~~~ir~~PPL~is~~ei  429 (443)
T PRK07323        361 LQDRFPFLGDVRGRG-LMIGLDFVDPDGNPDG-----DLRDRAVRLA-FEKGLLLLGCG----KAAIRICPPLVLTREEA  429 (443)
T ss_pred             HHHHCCCEEEEECCC-EEEEEEEECCCCCCCH-----HHHHHHHHHH-HHCCEEEEECC----CCEEEEECCEECCHHHH
T ss_conf             886099799873156-3999999548888488-----9999999999-97997998369----99899978910889999


Q ss_pred             HHHHHHHHHHHHHC
Q ss_conf             99999999999860
Q gi|254780602|r  386 EEACVRIKRFCHSL  399 (400)
Q Consensus       386 ~~al~rl~~~l~~l  399 (400)
                      ++++++|++.+++|
T Consensus       430 d~~l~~l~~al~el  443 (443)
T PRK07323        430 ATGLDILREVFREL  443 (443)
T ss_pred             HHHHHHHHHHHHHC
T ss_conf             99999999999849


No 221
>cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites.
Probab=99.52  E-value=6.4e-13  Score=98.75  Aligned_cols=345  Identities=15%  Similarity=0.102  Sum_probs=197.4

Q ss_pred             HHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCC-CCCC------CCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf             9999999999998699726656589749889999999999983887-5699------87789899999999864210133
Q gi|254780602|r   16 TLVAAQRVRDLRSKGIDVLCLTAGEPDFDMPENVKYAVVRAMERGE-TKYT------AVAGISPLREAIVEKFRRDNDLH   88 (400)
Q Consensus        16 ~~~~~~~~~~~~~~g~~ii~l~~G~p~~~~p~~i~~a~~~al~~~~-~~Y~------~~~G~~~lR~aia~~~~~~~g~~   88 (400)
                      ++++.++-.+.++.+   |+|-..+. + +++.+++++...+.+.. -||+      ......++-....++.++.|+.+
T Consensus         7 i~~~i~~E~~rq~~~---l~LIaSEN-~-~S~~v~~a~gS~ltnkYaeG~pg~Ryy~G~~~iD~iE~la~~rak~LF~a~   81 (402)
T cd00378           7 IAEIIKKENERQRET---LELIASEN-F-TSPAVMEAMGSDLTNKYAEGYPGKRYYGGCEYVDEIEDLAIERAKKLFGAE   81 (402)
T ss_pred             HHHHHHHHHHHHHHC---CEEECCCC-C-CCHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC
T ss_conf             999999999999809---64755766-4-799999985673015476889986466766259999999999999983898


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-----CCCCCCC--CCCCCCCCCCCCCCCHHHHHHCCC
Q ss_conf             332233233454333322222223322322223333232222-----2222222--222222222232221033310001
Q gi|254780602|r   89 YTSDQIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPD-----MVALCGG--IPVFVDTQQDDNFQVSPEKLEQAI  161 (400)
Q Consensus        89 ~~~e~I~it~G~~~~l~~~~~~~~~~Gd~Vlv~~P~y~~y~~-----~~~~~g~--~~~~v~~~~~~~~~~d~~~l~~~i  161 (400)
                        --||=+.+|+ +|...++.++++|||+|+..++.-..|..     .+...|.  ..+++.+++++ +.+|.|++++..
T Consensus        82 --~anVqp~SGs-~AN~av~~all~pGD~il~l~l~~GGHltHg~~~~v~~~g~~~~~~~Y~vd~~~-~~IDyd~~~~~a  157 (402)
T cd00378          82 --YANVQPHSGS-QANLAVYFALLEPGDTIMGLDLSHGGHLTHGSFTKVSASGKLFESVPYGVDPET-GLIDYDALEKMA  157 (402)
T ss_pred             --CCCCCCCCHH-HHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCCC-CCCCHHHHHHHH
T ss_conf             --7475878739-999999999727999899866434777566778772021356788963245565-871899999999


Q ss_pred             -CCCCCCEEECCCCCCCCCCCCCC-CCCCCCCCCCCCCCCEEECCCCCC-CCCCCCCCCCCCCCCCCCCCCEEEEECCCC
Q ss_conf             -22122012113542100001233-332111223333320111012211-000001223322211123332257414654
Q gi|254780602|r  162 -TPKTKWLFLNSPSNPSGVVYSQN-RLRALADVLVRNPHVHIISDDIYE-HIVYRNCQFSNIVNVEPSLYERTLVVNGVS  238 (400)
Q Consensus       162 -~~~~k~i~l~nP~NPTG~v~s~~-~l~~i~~~~a~~~~i~ii~De~Y~-~l~~~~~~~~s~~~~~~~~~~~~i~~~S~S  238 (400)
                       ..|+|+|++-      ++.|++. +++++.++| ++.+.+++.|-+|- .|+-.+ .+++...   ..   -++.+|.-
T Consensus       158 ~~~kPklIi~G------~S~y~r~~d~~~~reIa-d~vgA~l~~D~aHi~GLIA~g-~~p~Pl~---~A---Dvvt~tTH  223 (402)
T cd00378         158 LEFKPKLIVAG------ASAYPRPIDFKRFREIA-DEVGAYLLVDMAHVAGLVAGG-VFPNPLP---GA---DVVTTTTH  223 (402)
T ss_pred             HHCCCCEEEEC------CCCCCCCCCHHHHHHHH-HHCCCEEEEEHHHHHHHEECC-CCCCCCC---CC---EEEECCCC
T ss_conf             86599699977------71565655889999999-870988985501234430356-5799768---76---57744643


Q ss_pred             CCCCCCCCCCCCCCCHH-HHHHHHHHHCCCCCCCCCCCCCCCCCC-CCCC-CCCCCCCCCCCCCCCCCCHHHHHHCCCCC
Q ss_conf             43223445444221101-226875310012223322222222222-2346-76432222221100000002455304776
Q gi|254780602|r  239 KAYAMTGLRIGYAAGAL-SLIKSMIVLQGQQTSGACSIAQWAAVE-ALNG-PQDFVVNNRKIFEYRRDLCVAQLQGVPGI  315 (400)
Q Consensus       239 K~~~~~G~RiG~~v~~~-~li~~l~~~~~~~~~~~~~~~q~a~~~-~l~~-~~~~~~~~~~~~~~~r~~~~~~L~~~~g~  315 (400)
                      |+|  +|-|-|.+..++ ++.+++.+..--...+.+...+.++.+ +|.+ .+.....-.+...+|.+.+.+.|.+. |+
T Consensus       224 KTl--rGPrGGiIl~~~~~~~~kId~avfPg~qggph~h~iAa~Aval~Ea~~~~f~~Ya~qVv~NAkaLA~~L~~~-G~  300 (402)
T cd00378         224 KTL--RGPRGGLILTRKGELAKKINSAVFPGLQGGPHLHVIAAKAVALKEALEPEFKAYAKQVVENAKALAEALKER-GF  300 (402)
T ss_pred             CCC--CCCCCEEEEECCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHC-CC
T ss_conf             457--899840899542789988546509864467456678999999999868668999999999999999999858-94


Q ss_pred             EEEEC-CCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEE----CCCCCC--CCCEEEEEE------ECCH
Q ss_conf             03302-7408998626410233211332248989999999987397998----350228--997289996------2999
Q gi|254780602|r  316 RYMIP-DGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVV----QGSSFG--HGPSIRISY------AVSD  382 (400)
Q Consensus       316 ~~~~p-~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~----pG~~Fg--~~~~iRis~------~~~~  382 (400)
                      ++... ..+-.+|+|+...          ..+..+ +..+|++.||.+.    |+..-.  .+..|||.-      +-.+
T Consensus       301 ~vv~ggTd~H~vlvd~~~~----------g~~G~~-a~~~Le~~gI~~Nkn~iP~d~~~~~~~sGiRiGT~a~T~rG~~e  369 (402)
T cd00378         301 KVVSGGTDNHLVLVDLRPK----------GITGKA-AEDALEEAGITVNKNTLPWDPSSPFVPSGIRIGTPAMTTRGMGE  369 (402)
T ss_pred             EEECCCCCCCEEEEECCCC----------CCCHHH-HHHHHHHCCEEECCCCCCCCCCCCCCCCCEEECCHHHHHCCCCH
T ss_conf             7974899887799966645----------689999-99999984908754748899999999976164778998589988


Q ss_pred             HHHHHHHHHHHHHHH
Q ss_conf             999999999999998
Q gi|254780602|r  383 AILEEACVRIKRFCH  397 (400)
Q Consensus       383 e~l~~al~rl~~~l~  397 (400)
                      +++++-.+-|.+.++
T Consensus       370 ~em~~ia~lI~~~l~  384 (402)
T cd00378         370 EEMEEIADFIARALK  384 (402)
T ss_pred             HHHHHHHHHHHHHHH
T ss_conf             999999999999981


No 222
>PRK06105 aminotransferase; Provisional
Probab=99.52  E-value=4.5e-13  Score=99.66  Aligned_cols=348  Identities=13%  Similarity=0.077  Sum_probs=175.2

Q ss_pred             CCCCEEECCCCCC--CCC-CCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             6997266565897--498-8999999999998388756998778989999999986421013333223323345433332
Q gi|254780602|r   29 KGIDVLCLTAGEP--DFD-MPENVKYAVVRAMERGETKYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIF  105 (400)
Q Consensus        29 ~g~~ii~l~~G~p--~~~-~p~~i~~a~~~al~~~~~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l~  105 (400)
                      +|+..||+..|.-  .+. -+|.|.+|+++.++...+-........+.+..+|+.+.+...  ..-++|.++++++++..
T Consensus        46 dG~~ylD~~sg~~~~~lGh~hp~i~~Ai~~Q~~~~~~~~~~~~~~~~~~~~lAe~L~~~~p--~~l~~v~f~~sGSEAvE  123 (460)
T PRK06105         46 AGKRYIEGMAGLWSVAVGFSEQRLVEAAARQMKKLPFYHTFSHKSHGPVIDLAEKLVAMAP--VPMSKVFFTNSGSEAND  123 (460)
T ss_pred             CCCEEEECCCCHHHCCCCCCCHHHHHHHHHHHHHCCCEECCCCCCCHHHHHHHHHHHHHCC--CCCCEEEEECCHHHHHH
T ss_conf             9999999762387510267999999999999965786012587678899999999997378--88487998377088999


Q ss_pred             CCCCCC-------CCCCC-CCCCCCCCCCCCCCC-CCCCC--------------CCCCCCCCC----C----CCCCC-CH
Q ss_conf             222222-------33223-222233332322222-22222--------------222222222----2----23222-10
Q gi|254780602|r  106 NALMAT-------VNMGD-EVLIPRPYWVSYPDM-VALCG--------------GIPVFVDTQ----Q----DDNFQ-VS  153 (400)
Q Consensus       106 ~~~~~~-------~~~Gd-~Vlv~~P~y~~y~~~-~~~~g--------------~~~~~v~~~----~----~~~~~-~d  153 (400)
                      .++...       ..+|. +|+...-+|-.-... ....|              ...+..|-.    .    +..|. -.
T Consensus       124 ~AlKlA~~y~~a~g~~~r~~iis~~~syHG~T~ga~s~tg~~~~~~~~~~~~~~~~~~~~P~~~r~~~~~~~~~~~~~~~  203 (460)
T PRK06105        124 TVVKLIWYYNNALGRPEKKKIISRKRGYHGVTIASASLTGLPNNHRSFDLPIDRILHTGCPHYYRFGLPGESEEAFATRL  203 (460)
T ss_pred             HHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCHHHHHHHH
T ss_conf             99999999999638988636997237636650445542089533556689988804467884346688887889999999


Q ss_pred             HHHHHCCCCC----CCCCEEECCC-CCCCCCC-CCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC-CCCCCCCC
Q ss_conf             3331000122----1220121135-4210000-12333321112233333201110122110000012233-22211123
Q gi|254780602|r  154 PEKLEQAITP----KTKWLFLNSP-SNPSGVV-YSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFS-NIVNVEPS  226 (400)
Q Consensus       154 ~~~l~~~i~~----~~k~i~l~nP-~NPTG~v-~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~-s~~~~~~~  226 (400)
                      .+++++.+..    ++-+++ .-| +.-.|.+ .+++.++++.++| +++|+++|.||++..+.=.|.-+. .-..+.|+
T Consensus       204 ~~~le~~i~~~~~~~iAavI-vEPiqg~gG~~~~p~~yl~~lr~lc-~~~gillI~DEV~tGfGRtG~~fa~e~~gv~PD  281 (460)
T PRK06105        204 ANELEALILAEGPDTIAAFI-GEPVMGAGGVIVPPKTYWEKIQAVL-RKYDILLVADEVICGFGRTGNMFGCETFGIKPD  281 (460)
T ss_pred             HHHHHHHHHHHCCCCEEEEE-ECCCCCCCCCCCCCHHHHHHHHHHH-HHCCCEEEECCCCCCCCCCCCCCEEECCCCCCC
T ss_conf             99999999851988567998-3672488887269868989999999-856977993354117873337612205873787


Q ss_pred             CCCEEEEECCCCCCCCCCC-CCCCCCCCHHHHHHHHHHHCC-------CCCCCCCCCCCCCCCCCCCC--CCCCCCCCCC
Q ss_conf             3322574146544322344-544422110122687531001-------22233222222222222346--7643222222
Q gi|254780602|r  227 LYERTLVVNGVSKAYAMTG-LRIGYAAGALSLIKSMIVLQG-------QQTSGACSIAQWAAVEALNG--PQDFVVNNRK  296 (400)
Q Consensus       227 ~~~~~i~~~S~SK~~~~~G-~RiG~~v~~~~li~~l~~~~~-------~~~~~~~~~~q~a~~~~l~~--~~~~~~~~~~  296 (400)
                           |+  +++|..+ .| +-+|.+++.+++.+.+.....       ..+.+.+.+...++.+.|+.  .++.+++.  
T Consensus       282 -----iv--~~gKglg-gG~~Pl~av~~~~~i~~~~~~~~~~~~~~~hg~T~~gnpla~Aaala~L~~i~~~~l~~~~--  351 (460)
T PRK06105        282 -----IL--VLSKQLT-SSYQPLSAVLINERVYDPIADESGKIGTFGHGFTASGHPVAAAVALENLAIIEERDLVGNA--  351 (460)
T ss_pred             -----EE--EEECCCC-CCCCCEEEEEECHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHH--
T ss_conf             -----45--6611235-7877504884238898765036666666532568999989999999999999864899999--


Q ss_pred             CCCCCCCCHHHHHHC---CCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCCCCE
Q ss_conf             110000000245530---47760330274089986264102332113322489899999999873979983502289972
Q gi|254780602|r  297 IFEYRRDLCVAQLQG---VPGIRYMIPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGHGPS  373 (400)
Q Consensus       297 ~~~~~r~~~~~~L~~---~~g~~~~~p~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~  373 (400)
                        ++.-+++.+.|++   .+.+.-++..| +++=+++-.......+..........+... +.++||++.|.     .+.
T Consensus       352 --~~~g~~l~~~L~~l~~~p~i~~VRG~G-l~~gielv~~~~~~~~~~~~~~~~~~v~~~-~~~~Gll~~~~-----gn~  422 (460)
T PRK06105        352 --AELGARFQDRLRALADHPLVGEVRGVG-LIAAVELVADKATKTPFDPPGAVGARANAR-AHEHGVISRAM-----GDT  422 (460)
T ss_pred             --HHHHHHHHHHHHHHHCCCCEEEEECCC-EEEEEEEECCCCCCCCCCCCHHHHHHHHHH-HHHCCCEEEEC-----CCE
T ss_conf             --999999999999862699768885167-399999851654455677207999999999-99789689306-----998


Q ss_pred             EEEE--EECCHHHHHHHHHHHHHHHHHC
Q ss_conf             8999--6299999999999999999860
Q gi|254780602|r  374 IRIS--YAVSDAILEEACVRIKRFCHSL  399 (400)
Q Consensus       374 iRis--~~~~~e~l~~al~rl~~~l~~l  399 (400)
                      |||+  +..+++++++++++|.+.|+..
T Consensus       423 i~i~PPL~it~~eid~~~~~l~~aL~e~  450 (460)
T PRK06105        423 LAFCPPLIITAAQVDEMVDRFGRALDDT  450 (460)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             9997992488999999999999999999


No 223
>PRK04612 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Provisional
Probab=99.52  E-value=5e-13  Score=99.39  Aligned_cols=337  Identities=14%  Similarity=0.116  Sum_probs=176.1

Q ss_pred             HCCCCEEECCCCC--CCCC-CCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf             8699726656589--7498-899999999999838875699877898999999998642101333322332334543333
Q gi|254780602|r   28 SKGIDVLCLTAGE--PDFD-MPENVKYAVVRAMERGETKYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVI  104 (400)
Q Consensus        28 ~~g~~ii~l~~G~--p~~~-~p~~i~~a~~~al~~~~~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l  104 (400)
                      ..|+..||+..|.  ..+. -+|.|.+|+++.++.-.  +.......+.+..+|+.+.+...   ..+.|.+++++++|.
T Consensus        37 ~dG~~ylD~~sg~~~~~lGh~hp~v~~Ai~~Q~~~l~--~~~~~~~~~~~~~lae~L~~~~~---~~~~v~f~~SGsEAv  111 (408)
T PRK04612         37 DQGREYLDLSSGIAVSGLGHNDPDLVAALTEQAGKLW--HTSNVFFSAPPLKLAEELVTASR---FAEKVFLCNSGTEAN  111 (408)
T ss_pred             CCCCEEEEECHHHHHHHHCCCCHHHHHHHHHHHHHCC--CCCCCCCCHHHHHHHHHHHHCCC---CCCEEEECCCHHHHH
T ss_conf             9889999924507751225898999999999986525--76675226589999999972268---876699718746899


Q ss_pred             CCCCCCCC-------CCC--CCCCCCCCCCCCCCCCCCCCCCCCCC----CCCCCCCCCC--CHHHHHHCCCCC-CCCCE
Q ss_conf             22222223-------322--32222333323222222222222222----2222223222--103331000122-12201
Q gi|254780602|r  105 FNALMATV-------NMG--DEVLIPRPYWVSYPDMVALCGGIPVF----VDTQQDDNFQ--VSPEKLEQAITP-KTKWL  168 (400)
Q Consensus       105 ~~~~~~~~-------~~G--d~Vlv~~P~y~~y~~~~~~~g~~~~~----v~~~~~~~~~--~d~~~l~~~i~~-~~k~i  168 (400)
                      ..+++..-       .+.  ..|+...-+|-.....+......+..    .|+...-.+.  -|.+.+++.+.. ++-++
T Consensus       112 E~AlKlAr~y~~~~G~~~~k~~ii~~~~syHG~t~~als~t~~~~~~~~~~p~p~~~~~~~~~d~~~le~~~~~~~iAAv  191 (408)
T PRK04612        112 EAAIKLVRKWASSQGRPADKRVIVTFRGSFHGRTLASVTATAQPKYQEGYEPLPGGFRYVDFNDVEALEAAMAGGDVAAV  191 (408)
T ss_pred             HHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCEECCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHCCCCCEEEE
T ss_conf             99999999998732887777699998585259876742256784334688899885254366749999971569978999


Q ss_pred             EECCCC-CCCCCCC-CCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCC-CCCCCCCCCCEEEEECCCCCCCCCCC
Q ss_conf             211354-2100001-23333211122333332011101221100000122332-22111233322574146544322344
Q gi|254780602|r  169 FLNSPS-NPSGVVY-SQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSN-IVNVEPSLYERTLVVNGVSKAYAMTG  245 (400)
Q Consensus       169 ~l~nP~-NPTG~v~-s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s-~~~~~~~~~~~~i~~~S~SK~~~~~G  245 (400)
                      ++ -|= .-.|.+. +++-+++|.++| +++|+++|.||+...+.=.|.-+.. -..+.|+     |+  .++|..+ .|
T Consensus       192 iv-EPi~g~gG~~~~~~~yl~~l~~lc-~~~gillI~DEV~TGfGRtG~~fa~~~~~v~PD-----ii--~~gKglg-~G  261 (408)
T PRK04612        192 ML-EPIQGEGGVMPAAPGFLARVRALC-DQHDALLVLDEIQCGMGRTGTLFAHWQEQVTPD-----IV--TLAKALG-GG  261 (408)
T ss_pred             EE-ECCCCCCCCCCCCHHHHHHHHHHH-HHCCCEEEEEECCCCCCCCCCHHHHHHCCCCCC-----EE--EEEHHHC-CC
T ss_conf             99-786788883068999999999999-756946985012247886762035551289999-----89--9723223-88


Q ss_pred             CCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCHHHHHHCC----CCCEEEE
Q ss_conf             544422110122687531001222332222222222223467--6432222221100000002455304----7760330
Q gi|254780602|r  246 LRIGYAAGALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGP--QDFVVNNRKIFEYRRDLCVAQLQGV----PGIRYMI  319 (400)
Q Consensus       246 ~RiG~~v~~~~li~~l~~~~~~~~~~~~~~~q~a~~~~l~~~--~~~~~~~~~~~~~~r~~~~~~L~~~----~g~~~~~  319 (400)
                      +.+|.+++.+++.+.+..-....+.+.+.+...++.+.|+.-  ++.+++    .+++-+++.+.|+++    +-+.=++
T Consensus       262 ~Pl~av~~~~~i~~~~~~~~h~~T~~gnpla~aaala~L~~i~~~~l~~~----~~~~g~~l~~~L~~l~~~~~~i~~vR  337 (408)
T PRK04612        262 FPIGAMLAGPKVAETMQFGAHGTTFGGNPLAAAVARVALRKLASPQIAAN----VARQSAALRAGLEALNAEFGVFAQIR  337 (408)
T ss_pred             CCEEEEEECHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHH----HHHHHHHHHHHHHHHHHCCCCEEEEC
T ss_conf             76289998688885146899788887359999999999999986669999----99999999999999874079888322


Q ss_pred             CCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCCCCEEEEE--EECCHHHHHHHHHHHHHHHH
Q ss_conf             2740899862641023321133224898999999998739799835022899728999--62999999999999999998
Q gi|254780602|r  320 PDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGHGPSIRIS--YAVSDAILEEACVRIKRFCH  397 (400)
Q Consensus       320 p~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~iRis--~~~~~e~l~~al~rl~~~l~  397 (400)
                      .. |+++=+.+..         ........+...+ .++|+++.++.    ++-||++  +..+++++++++++|++.|.
T Consensus       338 G~-GLm~giel~~---------~~~~~~~~i~~~~-~~~Gll~~~~g----~~~irl~PPL~it~~eide~l~~l~~al~  402 (408)
T PRK04612        338 GR-GLMLGAVLAP---------AHAGQAGAILDLA-AEHGLLLLQAG----PDVLRFVPALNLTDAELADGLARLRLALA  402 (408)
T ss_pred             CC-CEEEEEEECC---------CCCCHHHHHHHHH-HHCCCEEECCC----CCEEEEECCCCCCHHHHHHHHHHHHHHHH
T ss_conf             04-4699999547---------8862699999999-97891993179----99799968833889999999999999999


Q ss_pred             H
Q ss_conf             6
Q gi|254780602|r  398 S  398 (400)
Q Consensus       398 ~  398 (400)
                      .
T Consensus       403 ~  403 (408)
T PRK04612        403 A  403 (408)
T ss_pred             H
T ss_conf             9


No 224
>PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=99.52  E-value=3.9e-13  Score=100.05  Aligned_cols=346  Identities=11%  Similarity=0.091  Sum_probs=178.6

Q ss_pred             CCCCEEECCCCC--CCCC-CCHHHHHHHHHHHHCCCCCCCCCCCC-HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf             699726656589--7498-89999999999983887569987789-8999999998642101333322332334543333
Q gi|254780602|r   29 KGIDVLCLTAGE--PDFD-MPENVKYAVVRAMERGETKYTAVAGI-SPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVI  104 (400)
Q Consensus        29 ~g~~ii~l~~G~--p~~~-~p~~i~~a~~~al~~~~~~Y~~~~G~-~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l  104 (400)
                      .|+..||+..|-  ..+. -+|.|.+|+++.++.-.  |....|. .+.+..+|+.+.....  -.-+.|.+++++++|.
T Consensus        56 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~Q~~~l~--~~~~~~~~~~~~~~LAe~L~~~~p--~~~~~v~f~~SGseA~  131 (462)
T PRK06916         56 NGNEYWDGVSSIWLNVHGHRVPELDEAIREQLNKIA--HSTMLGLANVPSILLAEKLIEVVP--EGLKKVFYSDSGSSAV  131 (462)
T ss_pred             CCCEEEECCCCHHHCCCCCCCHHHHHHHHHHHHHCC--CCCCCCCCCHHHHHHHHHHHHHCC--CCCCEEEECCCHHHHH
T ss_conf             999998846337740356896999999999986656--856777677889999999998577--5548799549749999


Q ss_pred             CCCCCCC-------CCCC-CCCCCCCCCCCCCCCC-CCCCCC--------------CCCCCCCCCCCCCCC--------H
Q ss_conf             2222222-------3322-3222233332322222-222222--------------222222222232221--------0
Q gi|254780602|r  105 FNALMAT-------VNMG-DEVLIPRPYWVSYPDM-VALCGG--------------IPVFVDTQQDDNFQV--------S  153 (400)
Q Consensus       105 ~~~~~~~-------~~~G-d~Vlv~~P~y~~y~~~-~~~~g~--------------~~~~v~~~~~~~~~~--------d  153 (400)
                      ..++..-       ..++ ..||...-+|-.-... ....|.              ...++|......+..        +
T Consensus       132 E~AiKlAr~y~~~~g~~~r~~ii~~~~syHG~T~ga~s~s~~~~~~~~~~~~~~~~~~~p~p~~~~~~~~~~~~~~~~~~  211 (462)
T PRK06916        132 EIAIKMAFQYWQHKGKPKKQRFVTLKEAYHGDTIGAVSVGAIDLFHQVYSSLLFEAIKMPYPYTYRSPYGNDKEEIVKKH  211 (462)
T ss_pred             HHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCHHHHHHHH
T ss_conf             99999999999982888763799836885877520010467411357777878884676899755676789878999999


Q ss_pred             HHHHHCCCCC---CCCCEEECCC--CCCCCCC-CCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC-CCCCCCCC
Q ss_conf             3331000122---1220121135--4210000-12333321112233333201110122110000012233-22211123
Q gi|254780602|r  154 PEKLEQAITP---KTKWLFLNSP--SNPSGVV-YSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFS-NIVNVEPS  226 (400)
Q Consensus       154 ~~~l~~~i~~---~~k~i~l~nP--~NPTG~v-~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~-s~~~~~~~  226 (400)
                      ++++++.+..   ++.++++- |  ++-.|.+ .+++-+++|.++| +++|+++|.||+...+.=.|.-+. .-..+.|+
T Consensus       212 ~~~le~~i~~~~~~iAaviiE-P~iqg~gG~~~~p~~yl~~lr~lc-~~~gillI~DEV~TGfGRtG~~fa~e~~gv~PD  289 (462)
T PRK06916        212 LEEMEELLKEKHEEIAAIIVE-PLMQGAGGMITMPKGYLKGLRNLC-TKYNVLFITDEVATGFGRTGKMFACEHENVTPD  289 (462)
T ss_pred             HHHHHHHHHHCCCCEEEEEEE-ECCCCCCCCCCCCHHHHHHHHHHH-HHCCCCEECCCCCCCCCCCCCCCHHHCCCCCCC
T ss_conf             999999997579976699996-144578996578789999999998-605972672543027875567116642796688


Q ss_pred             CCCEEEEECCCCCCCCCCC-CCCCCCCCHHHHHHHHHH----HC---CCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCC
Q ss_conf             3322574146544322344-544422110122687531----00---122233222222222222346--7643222222
Q gi|254780602|r  227 LYERTLVVNGVSKAYAMTG-LRIGYAAGALSLIKSMIV----LQ---GQQTSGACSIAQWAAVEALNG--PQDFVVNNRK  296 (400)
Q Consensus       227 ~~~~~i~~~S~SK~~~~~G-~RiG~~v~~~~li~~l~~----~~---~~~~~~~~~~~q~a~~~~l~~--~~~~~~~~~~  296 (400)
                           |+  +++|..+ .| +-+|.+++.+++.+.+..    ..   ...+.+.+.+...++.+.|+.  .+..+++.+ 
T Consensus       290 -----iv--~~gKgl~-gG~~Pl~av~~~~~i~~~~~~~~~~~~~~~hg~T~~GnPla~Aaa~a~L~~i~~e~l~~~v~-  360 (462)
T PRK06916        290 -----IL--TAGKGLT-GGYLPIAITVTTDEIYNAFLGDYEEQKTFFHGHSYTGNPLGCAVAIANLELYEKTNLIEQVA-  360 (462)
T ss_pred             -----HH--HHCHHCC-CCCCCEEEEEEHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHH-
T ss_conf             -----34--3121103-78776279976189887531665456665567778888799999999999999668899999-


Q ss_pred             CCCCCCCCHHHHHH---CCCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCCCCE
Q ss_conf             11000000024553---047760330274089986264102332113322489899999999873979983502289972
Q gi|254780602|r  297 IFEYRRDLCVAQLQ---GVPGIRYMIPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGHGPS  373 (400)
Q Consensus       297 ~~~~~r~~~~~~L~---~~~g~~~~~p~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~  373 (400)
                         ++-+++.+.|+   +.+.+.-++..| +++=+++-+......+......-..+++..+ .+.|+++.|.     .+.
T Consensus       361 ---~~g~~l~~~L~~l~~~~~v~dVRG~G-l~~gielv~~~~~~~~~~~~~~~~~~i~~~~-~~~Gll~~~~-----gn~  430 (462)
T PRK06916        361 ---RKTEYVATQLEDLFALKHVGDIRQLG-LMVGIELVKNKETKEPFPWTERVGVQVCKRS-RELGMILRPL-----GNT  430 (462)
T ss_pred             ---HHHHHHHHHHHHHHCCCCEEEEECCC-CEEEEEEECCCCCCCCCCHHHHHHHHHHHHH-HHCCEEEEEC-----CCE
T ss_conf             ---99999999999862699858772477-1899998326654677855789999999999-9699499744-----999


Q ss_pred             EEEE--EECCHHHHHHHHHHHHHHHHHC
Q ss_conf             8999--6299999999999999999860
Q gi|254780602|r  374 IRIS--YAVSDAILEEACVRIKRFCHSL  399 (400)
Q Consensus       374 iRis--~~~~~e~l~~al~rl~~~l~~l  399 (400)
                      +|++  +..+++++++++++|++.|+.+
T Consensus       431 i~~~PPL~it~~eid~~~~il~~al~ev  458 (462)
T PRK06916        431 IVFMPPLASTIDELDEMLRILYKAISDV  458 (462)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             9998993488999999999999999999


No 225
>PRK06777 4-aminobutyrate aminotransferase; Provisional
Probab=99.51  E-value=2.4e-13  Score=101.29  Aligned_cols=344  Identities=15%  Similarity=0.147  Sum_probs=180.3

Q ss_pred             CCCCEEECCCCCC----CCCCCHHHHHHHHHHHHCCCC-CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf             6997266565897----498899999999999838875-69987789899999999864210133332233233454333
Q gi|254780602|r   29 KGIDVLCLTAGEP----DFDMPENVKYAVVRAMERGET-KYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHV  103 (400)
Q Consensus        29 ~g~~ii~l~~G~p----~~~~p~~i~~a~~~al~~~~~-~Y~~~~G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~  103 (400)
                      +|+..||+..|--    .+. .|.|.+|+++.++...+ .|....  .+.+.++|+.+......+ ..+.+++++++++|
T Consensus        38 dG~~ylD~~sg~~~~~lGh~-~p~i~~Ai~~Ql~~l~~~~~~~~~--~~~~~~lae~l~~~~p~~-g~~~v~f~~SGSEA  113 (421)
T PRK06777         38 EGREYIDFAAGIAVLNTGHR-HPKVMAAVRQQLDQFTHTAYQIVP--YASYVTLAERINSLAPIS-GNSKTAFFTTGAEA  113 (421)
T ss_pred             CCCEEEEECCCHHHHHHCCC-CHHHHHHHHHHHHHCCCCCCCCCC--CHHHHHHHHHHHHHCCCC-CCCEEEEECCHHHH
T ss_conf             87999893533875202479-899999999998613574554556--669999999999747766-76449996782789


Q ss_pred             CCCCCCCCC--CCCCCCCCCCCCCCCCCCCCC-CCCC--------CCCCCCC----CCCCCCCCH----HHHHHCCCC--
Q ss_conf             322222223--322322223333232222222-2222--------2222222----222322210----333100012--
Q gi|254780602|r  104 IFNALMATV--NMGDEVLIPRPYWVSYPDMVA-LCGG--------IPVFVDT----QQDDNFQVS----PEKLEQAIT--  162 (400)
Q Consensus       104 l~~~~~~~~--~~Gd~Vlv~~P~y~~y~~~~~-~~g~--------~~~~v~~----~~~~~~~~d----~~~l~~~i~--  162 (400)
                      ...++...-  .....|+...-+|-.....+. ..|-        .+.+-..    .++..+...    ++.+++.+.  
T Consensus       114 ve~AiKlAr~~tgr~~ii~~~~syHG~t~~a~s~tg~~~~~~~~~~p~p~~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~  193 (421)
T PRK06777        114 VENAVKIARAATGRPGVIAFSGAFHGRTLLTMALTGKVAPYKVGFGPFPGSIFHALYPNELYGVSVEEAISSVERLFRCD  193 (421)
T ss_pred             HHHHHHHHHHHCCCCCEEEECCCCCCCCHHHEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf             99999999986399963775787699634330015887754467789998602236897224656899999999999750


Q ss_pred             ---CCCCCEEECCC-CCCCCC-CCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC-CCCCCCCCCCCEEEEECC
Q ss_conf             ---21220121135-421000-012333321112233333201110122110000012233-222111233322574146
Q gi|254780602|r  163 ---PKTKWLFLNSP-SNPSGV-VYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFS-NIVNVEPSLYERTLVVNG  236 (400)
Q Consensus       163 ---~~~k~i~l~nP-~NPTG~-v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~-s~~~~~~~~~~~~i~~~S  236 (400)
                         +++-++++ -| +.-.|. +.+++-++++-++| +++|+++|.||+...+.=.|.-+. .-..+.|+     |+  +
T Consensus       194 ~~~~~iAAvi~-EPiqg~gG~~~~p~~yl~~lr~lc-~~~gillI~DEV~tGfGRtG~~fa~e~~gv~PD-----iv--~  264 (421)
T PRK06777        194 ISPTQVAAILL-EPIQGEGGFNIAPPEFVSALRTLC-DEHGILLIADEVQTGFARTGKLFAMEYYDTKVD-----LI--T  264 (421)
T ss_pred             CCCCCEEEEEE-ECCCCCCCCEECCHHHHHHHHHHH-HHCCCEEEECCCEECCCCCCCCCHHHCCCCCCC-----EE--E
T ss_conf             58885899998-354378886409999999999999-983977971121106775678434315877797-----88--7


Q ss_pred             CCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCHHHHHHC---
Q ss_conf             544322344544422110122687531001222332222222222223467--643222222110000000245530---
Q gi|254780602|r  237 VSKAYAMTGLRIGYAAGALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGP--QDFVVNNRKIFEYRRDLCVAQLQG---  311 (400)
Q Consensus       237 ~SK~~~~~G~RiG~~v~~~~li~~l~~~~~~~~~~~~~~~q~a~~~~l~~~--~~~~~~~~~~~~~~r~~~~~~L~~---  311 (400)
                      ++|.++ .|+-+|.+++.+++++.........+.+.+.+...++.+.|+.-  ++.++    .-++.-+++.+.|++   
T Consensus       265 ~gKgl~-gG~P~~av~~~~~i~~~~~~~~~~~Tf~G~pl~caaa~a~L~~i~~~~l~~----~~~~~g~~l~~~L~~l~~  339 (421)
T PRK06777        265 MAKSLG-GGMPISAVTGRADVMDAPLPGGLGGTYAGNPLAVAAALAVLDVIAEEKLCE----RALILGAKLVEVLEKAQM  339 (421)
T ss_pred             ECCCCC-CCCCEEEEEECHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHH----HHHHHHHHHHHHHHHHHH
T ss_conf             440025-876507898627875257887637889989899999999999998635999----999999999999999885


Q ss_pred             -CCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCCCCEEEEE--EECCHHHHHHH
Q ss_conf             -477603302740899862641023321133224898999999998739799835022899728999--62999999999
Q gi|254780602|r  312 -VPGIRYMIPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGHGPSIRIS--YAVSDAILEEA  388 (400)
Q Consensus       312 -~~g~~~~~p~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~iRis--~~~~~e~l~~a  388 (400)
                       .|.+.=++.. |+++=+++.+... ..+..   .....+..+++ +.|+++.++..+  ++-|||.  +..++++++++
T Consensus       340 ~~p~v~dVRG~-GL~~gie~~d~~~-~~~~~---~~~~~i~~~~~-~~Glll~~~g~~--~nvir~~PPL~it~~eid~~  411 (421)
T PRK06777        340 SNAAIVGIRAR-GSMVAVEFNDPVT-GKPSP---ELTRAYQRQAL-EEGLLLLSCGVH--GNVIRFLYPLTIPDKQFKKA  411 (421)
T ss_pred             HCCCEEEEECC-EEEEEEEECCCCC-CCCCH---HHHHHHHHHHH-HCCCEEEECCCC--CCEEEEECCCCCCHHHHHHH
T ss_conf             58988986236-4899999716877-89589---99999999999-789889845899--99899979954789999999


Q ss_pred             HHHHHHHHHH
Q ss_conf             9999999986
Q gi|254780602|r  389 CVRIKRFCHS  398 (400)
Q Consensus       389 l~rl~~~l~~  398 (400)
                      ++.|++.|.+
T Consensus       412 ~~il~~aL~s  421 (421)
T PRK06777        412 MNILTRLLAS  421 (421)
T ss_pred             HHHHHHHHCC
T ss_conf             9999999749


No 226
>PRK07036 hypothetical protein; Provisional
Probab=99.51  E-value=3.1e-13  Score=100.71  Aligned_cols=345  Identities=14%  Similarity=0.142  Sum_probs=177.7

Q ss_pred             HCCCCEEECCCCCC--CCC-CCHHHHHHHHHHHHCCCCCCCCCCC-CHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf             86997266565897--498-8999999999998388756998778-9899999999864210133332233233454333
Q gi|254780602|r   28 SKGIDVLCLTAGEP--DFD-MPENVKYAVVRAMERGETKYTAVAG-ISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHV  103 (400)
Q Consensus        28 ~~g~~ii~l~~G~p--~~~-~p~~i~~a~~~al~~~~~~Y~~~~G-~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~  103 (400)
                      ..|++.||+..|--  .+. -+|.|.+|+++.+++..+ +.+..+ ..+.+..+|+.+.....  -..+.|++++++++|
T Consensus        48 ~dG~~ylD~~sg~~~~~lGh~~p~v~~Ai~~Q~~~l~~-~~~~~~~~~~~~~~lae~L~~~~p--~~~~~v~f~~SGsEA  124 (466)
T PRK07036         48 ADGRRYLDGIGGMWCVNIGYGREEMADAIADQARRLPY-YTPFGDMTNAPAAELAAKLAELAP--GDLNHVFLTTGGSTA  124 (466)
T ss_pred             CCCCEEEECCCCHHHHCCCCCCHHHHHHHHHHHHHCCC-CCCCCCCCCHHHHHHHHHHHHHCC--CCCCEEEEECCHHHH
T ss_conf             99999999653478502178979999999999976786-067643268999999999997488--775879983773889


Q ss_pred             CCCCCCCC-------CCCC-CCCCCCCCCCCCCCCCC-CCCCC--------------CCCCCC--CC-CCC----CC-CC
Q ss_conf             32222222-------3322-32222333323222222-22222--------------222222--22-223----22-21
Q gi|254780602|r  104 IFNALMAT-------VNMG-DEVLIPRPYWVSYPDMV-ALCGG--------------IPVFVD--TQ-QDD----NF-QV  152 (400)
Q Consensus       104 l~~~~~~~-------~~~G-d~Vlv~~P~y~~y~~~~-~~~g~--------------~~~~v~--~~-~~~----~~-~~  152 (400)
                      ...++..-       -.++ ..|+...-+|-.-...+ ...|.              ..+..|  .. +.+    .| ..
T Consensus       125 ~E~AlKlAr~~~~~~g~~~r~~ii~~~~syHG~T~~a~s~sg~~~~~~~~~~~~~~v~~~~~p~~~~~p~~~~~~~~~~~  204 (466)
T PRK07036        125 VDSALRFVHYYFNCRGRPAKKHIITRGDAYHGSTYLTASLTGKAADRTEFDYASDLVHHLSSPNPYRRPAGMSEAAFCDF  204 (466)
T ss_pred             HHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHECCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHH
T ss_conf             99999999999875088876089834897689656562205884456787788875043257765557766523678999


Q ss_pred             HHHHHHCCCC----CCCCCEEECCC-CCCCCCC-CCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCC--CCCCC
Q ss_conf             0333100012----21220121135-4210000-123333211122333332011101221100000122332--22111
Q gi|254780602|r  153 SPEKLEQAIT----PKTKWLFLNSP-SNPSGVV-YSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSN--IVNVE  224 (400)
Q Consensus       153 d~~~l~~~i~----~~~k~i~l~nP-~NPTG~v-~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s--~~~~~  224 (400)
                      -.+++++.+.    +++.+++ .-| ..=.|.+ .+++.+++|.++| +++|+++|.||+...+.=.|.-+.+  ...+.
T Consensus       205 ~~~~~e~~i~~~~~~~iAa~i-~EPi~G~gG~~~pp~~yl~~lr~lc-~~~gillI~DEV~tG~GRtG~~fa~~~~~gv~  282 (466)
T PRK07036        205 LVDEFEDKILELGADNIAAFI-AEPILGSGGVIVPPPGYHARMREIC-RRYDILYISDEVVTGFGRLGHFFASEAVFGIQ  282 (466)
T ss_pred             HHHHHHHHHHHCCCCCEEEEE-ECCCCCCCCEECCCHHHHHHHHHHH-HHCCEEEEEECCCCCCCCCCCCHHHHHHHCCC
T ss_conf             999999999861888668998-5662166871308889999999998-63790799745642888675520435863889


Q ss_pred             CCCCCEEEEECCCCCCCCCCC-CCCCCCCCHHHHHHHHHHHC------CC-CCCCCCCCCCCCCCCCCCCC--CCCCCCC
Q ss_conf             233322574146544322344-54442211012268753100------12-22332222222222223467--6432222
Q gi|254780602|r  225 PSLYERTLVVNGVSKAYAMTG-LRIGYAAGALSLIKSMIVLQ------GQ-QTSGACSIAQWAAVEALNGP--QDFVVNN  294 (400)
Q Consensus       225 ~~~~~~~i~~~S~SK~~~~~G-~RiG~~v~~~~li~~l~~~~------~~-~~~~~~~~~q~a~~~~l~~~--~~~~~~~  294 (400)
                      |+     |+  +++|..+ .| +-+|.+++.+++.+.+..-.      .+ .+.+.+.+...++.+.|+.-  ++.+++.
T Consensus       283 PD-----iv--~~gKgl~-gG~~Pl~av~~~~~i~~~~~~~~~~~~~~~hg~T~~gnpla~Aaa~a~L~~l~~e~l~~~~  354 (466)
T PRK07036        283 PD-----II--TVAKGLT-SGYQPLGAVIISERLVDVISGPNAKGGVFTHGFTYSGHPVACAAALKNIEIMEREGLCEHV  354 (466)
T ss_pred             CC-----EE--EECCCCC-CCCCCEEEEEECHHHHHHHCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCHHHHH
T ss_conf             87-----79--8713356-8877648999859999875046788845503678889989999999999998626699999


Q ss_pred             CCCCCCCCCCHHH---HHHCCCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHH---HHHHCCEEEECCCCC
Q ss_conf             2211000000024---5530477603302740899862641023321133224898999999---998739799835022
Q gi|254780602|r  295 RKIFEYRRDLCVA---QLQGVPGIRYMIPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNG---LLEIEKVAVVQGSSF  368 (400)
Q Consensus       295 ~~~~~~~r~~~~~---~L~~~~g~~~~~p~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~---Ll~~~gV~v~pG~~F  368 (400)
                          +++-+++.+   .|++.+.+.-++.. |+++-+++-.-....    .....+..+..+   .+.+.||++.|.   
T Consensus       355 ----~~~G~~l~~~L~~L~~~p~v~dVRG~-GLm~gie~v~d~~~~----~~~~~~~~~~~~i~~~~~~~Gll~~~~---  422 (466)
T PRK07036        355 ----REVGPYFEERLASLRELPLVGDVRGD-HLMACVECVADKGSK----ALLPEDIAIGQRIDRHCQERGLLVRPL---  422 (466)
T ss_pred             ----HHHHHHHHHHHHHHHCCCCEEEEEEC-CEEEEEEEECCCCCC----CCCCCCHHHHHHHHHHHHHCCEEEEEC---
T ss_conf             ----99999999999975159977888632-389999970266544----457711799999999999699499966---


Q ss_pred             CCCCEEEEE--EECCHHHHHHHHHHHHHHHHHC
Q ss_conf             899728999--6299999999999999999860
Q gi|254780602|r  369 GHGPSIRIS--YAVSDAILEEACVRIKRFCHSL  399 (400)
Q Consensus       369 g~~~~iRis--~~~~~e~l~~al~rl~~~l~~l  399 (400)
                        .+.+|++  +..+++++++++++|++.++..
T Consensus       423 --g~~~~l~PPL~it~~eid~~l~~l~~al~ev  453 (466)
T PRK07036        423 --EHLCVLSPPLIITRAQIDEIVAILRAAIEET  453 (466)
T ss_pred             --CCEEEEECCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             --9889998997689999999999999999999


No 227
>PRK13360 omega amino acid--pyruvate transaminase; Provisional
Probab=99.51  E-value=5.5e-13  Score=99.17  Aligned_cols=341  Identities=12%  Similarity=0.098  Sum_probs=179.0

Q ss_pred             HCCCCEEECCCCCC--CCC-CCHHHHHHHHHHHHCCCCCCCCCCC-CHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf             86997266565897--498-8999999999998388756998778-9899999999864210133332233233454333
Q gi|254780602|r   28 SKGIDVLCLTAGEP--DFD-MPENVKYAVVRAMERGETKYTAVAG-ISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHV  103 (400)
Q Consensus        28 ~~g~~ii~l~~G~p--~~~-~p~~i~~a~~~al~~~~~~Y~~~~G-~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~  103 (400)
                      .+|+..||+..|--  .+. -+|.|.+|+++.+++-.  |.+..+ ..+.+..+|+.+......  .-+.|.+++++++|
T Consensus        42 ~dG~~ylD~~~g~~~~~lGh~hp~i~~Ai~~q~~~l~--~~~~~~~~~~~~~~lae~L~~~~p~--~l~~v~f~~SGsEA  117 (441)
T PRK13360         42 HDGRRVLDGTAGLWCVNAGHGRDEIVEAVRAQAGELD--YAPTFQMGHPKAFELATRIAEIAPG--GLNHVFFTNSGSES  117 (441)
T ss_pred             CCCCEEEECCCCHHHHCCCCCCHHHHHHHHHHHHHCC--CCCCCCCCCHHHHHHHHHHHHHCCC--CCCEEEEECCHHHH
T ss_conf             9999999965338864007797999999999986558--7346767877999999999985788--86879984878999


Q ss_pred             CCCCCCCCC-------CCC-CCCCCCCCCCCCCCC-CCCCCC--------------CCCCCCCCCC-CCC-------CCC
Q ss_conf             322222223-------322-322223333232222-222222--------------2222222222-232-------221
Q gi|254780602|r  104 IFNALMATV-------NMG-DEVLIPRPYWVSYPD-MVALCG--------------GIPVFVDTQQ-DDN-------FQV  152 (400)
Q Consensus       104 l~~~~~~~~-------~~G-d~Vlv~~P~y~~y~~-~~~~~g--------------~~~~~v~~~~-~~~-------~~~  152 (400)
                      +..++....       +++ ..|+...-+|-.-.. .....|              ...++.+.+. .+.       +..
T Consensus       118 ~E~AiKlAr~y~~~~g~~~r~~ii~~~~syHG~t~ga~s~sg~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~  197 (441)
T PRK13360        118 VDTALKIALAYHRARGQGQRTRLIGRERGYHGVGFGGISVGGIAPNRKAFGALLPGVDHLPHTLDLARNAFSKGQPEHGA  197 (441)
T ss_pred             HHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCHHHHH
T ss_conf             99999999999886099872289932786279884655355887544567788998513588764222433457525679


Q ss_pred             H-HHHHHCCCC---C-CCCCEEECCC-CCCCCC-CCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC-CCCCCC
Q ss_conf             0-333100012---2-1220121135-421000-012333321112233333201110122110000012233-222111
Q gi|254780602|r  153 S-PEKLEQAIT---P-KTKWLFLNSP-SNPSGV-VYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFS-NIVNVE  224 (400)
Q Consensus       153 d-~~~l~~~i~---~-~~k~i~l~nP-~NPTG~-v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~-s~~~~~  224 (400)
                      + .+++++.+.   + ++-++++ -| +-=.|. +.+++-+++|-++| +++++++|.||+...+.=.|.-+. ....+.
T Consensus       198 ~~~~~le~~~~~~~~~~iAAii~-EPiqg~gG~~~~p~~yl~~lr~lc-~~~gillI~DEV~tG~GRTG~~fa~e~~gv~  275 (441)
T PRK13360        198 ELADELERLVTLHDASTIAAVIV-EPVAGSTGVLIPPKGYLQRLREIC-DKHGILLIFDEVITGFGRLGAPFAAQYFGVT  275 (441)
T ss_pred             HHHHHHHHHHHHCCCCCEEEEEE-CCCCCCCCCCCCCHHHHHHHHHHH-HHCCCEEEECCCCCCCCCCCCCCEECCCCCC
T ss_conf             99999999998549885799997-776677895238999999999998-6359557720131268623567100168987


Q ss_pred             CCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHH--------CCCCCCCCCCCCCCCCCCCCCCC--CCCCCCC
Q ss_conf             2333225741465443223445444221101226875310--------01222332222222222223467--6432222
Q gi|254780602|r  225 PSLYERTLVVNGVSKAYAMTGLRIGYAAGALSLIKSMIVL--------QGQQTSGACSIAQWAAVEALNGP--QDFVVNN  294 (400)
Q Consensus       225 ~~~~~~~i~~~S~SK~~~~~G~RiG~~v~~~~li~~l~~~--------~~~~~~~~~~~~q~a~~~~l~~~--~~~~~~~  294 (400)
                      |+     |++  ++|.++-.++-+|.+++.+++.+.+..-        +. .+.+.+.+...++.+.|+.-  ++.+++ 
T Consensus       276 PD-----iv~--~gKgl~gG~~Plsav~~~~~i~~~~~~~~~~~~~~~hg-~T~~Gnplacaaa~a~L~~i~~e~l~~~-  346 (441)
T PRK13360        276 PD-----LLT--CAKGLTNGAIPMGAVFVSSEIHDAFMQGPEAGIEFFHG-YTYSGHPLACAAALATLDLYEREGLLTR-  346 (441)
T ss_pred             CC-----EEE--ECCHHHCCCCCCCEEEECHHHHHHHCCCCCCCCCCCCC-CCCCCCHHHHHHHHHHHHHHHHCCHHHH-
T ss_conf             87-----899--77232178734322552499997433697555421136-7778898999999999999997488999-


Q ss_pred             CCCCCCCCCCHHHHHHCC---CCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCCC
Q ss_conf             221100000002455304---77603302740899862641023321133224898999999998739799835022899
Q gi|254780602|r  295 RKIFEYRRDLCVAQLQGV---PGIRYMIPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGHG  371 (400)
Q Consensus       295 ~~~~~~~r~~~~~~L~~~---~g~~~~~p~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~  371 (400)
                         .++..+++.+.|+++   +.+.-++.. |+++=+++....      +.......+++.+++ +.||++.++     .
T Consensus       347 ---~~~~g~~l~~~L~~l~~~~~v~~VRG~-Gl~~giel~~~~------~~~~~~~~~~~~~~~-~~Gll~~~~-----g  410 (441)
T PRK13360        347 ---AARLAPYWEDALHSLRDAPHVIDIRNL-GLVGGIELAPRD------GKPGKRAYEVFLKCF-EKGLMIRYT-----G  410 (441)
T ss_pred             ---HHHHHHHHHHHHHHHHCCCCEEEECCC-CEEEEEEEECCC------CCHHHHHHHHHHHHH-HCCEEEECC-----C
T ss_conf             ---999999999999986249986885155-489999997888------865489999999999-699499317-----9


Q ss_pred             CEEEEE--EECCHHHHHHHHHHHHHHHHHC
Q ss_conf             728999--6299999999999999999860
Q gi|254780602|r  372 PSIRIS--YAVSDAILEEACVRIKRFCHSL  399 (400)
Q Consensus       372 ~~iRis--~~~~~e~l~~al~rl~~~l~~l  399 (400)
                      +.+|++  +..+++++++++++|.+.|+.+
T Consensus       411 n~irl~PPL~it~~eid~~~~~l~~aL~e~  440 (441)
T PRK13360        411 DILALSPPLIIEEAQIDELFDIVAQALKET  440 (441)
T ss_pred             CEEEEECCEECCHHHHHHHHHHHHHHHHHH
T ss_conf             989998992088999999999999999956


No 228
>PRK07483 hypothetical protein; Provisional
Probab=99.50  E-value=4.5e-13  Score=99.71  Aligned_cols=354  Identities=15%  Similarity=0.132  Sum_probs=181.9

Q ss_pred             HCCCCEEECCCCCC--CCC-CCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf             86997266565897--498-899999999999838875699877898999999998642101333322332334543333
Q gi|254780602|r   28 SKGIDVLCLTAGEP--DFD-MPENVKYAVVRAMERGETKYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVI  104 (400)
Q Consensus        28 ~~g~~ii~l~~G~p--~~~-~p~~i~~a~~~al~~~~~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l  104 (400)
                      ..|+..||+..|.-  .+. -+|.|.+|+++.++.-.+.++. ....+.++.+|+.+.+...  -.-+.+.+++++++|.
T Consensus        27 ~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~l~~~~~~-~~~~~~~~~Lae~L~~~~p--~~~~~v~f~~sGsEAv  103 (443)
T PRK07483         27 STGKRYLDASGGAAVSCLGHSHPRVIAAIKAQIDRLAYAHTS-FFTTEPAEALADRLVAAAP--AGLEHVYFVSGGSEAV  103 (443)
T ss_pred             CCCCEEEECCCCHHHHHHCCCCHHHHHHHHHHHHHCCCCCCC-CCCCHHHHHHHHHHHHHCC--CCCCEEEEECCHHHHH
T ss_conf             997999983518897744799799999999998336874457-5577899999999998578--8858799968668899


Q ss_pred             CCCCCCCC-------CCCC-CCCCCCCCCCCCCCCC-CCCCC-------CC-----CCC-CC-----CCCC----CCC-C
Q ss_conf             22222223-------3223-2222333323222222-22222-------22-----222-22-----2223----222-1
Q gi|254780602|r  105 FNALMATV-------NMGD-EVLIPRPYWVSYPDMV-ALCGG-------IP-----VFV-DT-----QQDD----NFQ-V  152 (400)
Q Consensus       105 ~~~~~~~~-------~~Gd-~Vlv~~P~y~~y~~~~-~~~g~-------~~-----~~v-~~-----~~~~----~~~-~  152 (400)
                      ..+++.--       .+|. .|+...-+|-.....+ ...|.       .+     ..+ |.     ...+    .|. .
T Consensus       104 e~AiklAr~y~~~~g~~~r~~ii~~~~~yHG~t~gals~sg~~~~~~~~~p~~~~~~~~~p~~~~~~~~~~~~~~~~~~~  183 (443)
T PRK07483        104 EAALKLARQYFVEKGQPQRRHFIARRQSYHGNTLGALAIGGNAWRREPFAPLLIEAHHVSPCYAYRDQRAGETDEAYGQR  183 (443)
T ss_pred             HHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCHHHCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHH
T ss_conf             99999999999871899872899983788788500110147610158888888884440688754456788887899999


Q ss_pred             HHHHHHCCCCC----CCCCEEECCCC-CC-CCCC-CCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC-CCCCCC
Q ss_conf             03331000122----12201211354-21-0000-12333321112233333201110122110000012233-222111
Q gi|254780602|r  153 SPEKLEQAITP----KTKWLFLNSPS-NP-SGVV-YSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFS-NIVNVE  224 (400)
Q Consensus       153 d~~~l~~~i~~----~~k~i~l~nP~-NP-TG~v-~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~-s~~~~~  224 (400)
                      ..+++++.+..    +.-+++ .-|- .- -|.+ .+++.+++|-++| +++|+++|.||+...+.=.|.-+. .-..+.
T Consensus       184 ~~~~le~~i~~~~~~~iAavi-~EPi~g~~gG~~~p~~~fl~~lr~lc-~~~gillI~DEV~tGfGRtG~~fa~e~~gv~  261 (443)
T PRK07483        184 LADELEAKILELGPDTVAAFV-AETVVGATAGAVPPVPGYFKRIREVC-DRYGVLLILDEVMCGMGRTGTLFACEEDGVA  261 (443)
T ss_pred             HHHHHHHHHHHHCCCCEEEEE-EECCCCCCCCCEECCHHHHHHHHHHH-HHCCEEEEEECCCCCCCCCCCCCCCCCCCCC
T ss_conf             999999999860888678999-83430475885448889999999999-8669589996152278854377530004558


Q ss_pred             CCCCCEEEEECCCCCCCCCCCC-CCCCCCCHHHHHHHHHHHC----CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             2333225741465443223445-4442211012268753100----1222332222222222223467643222222110
Q gi|254780602|r  225 PSLYERTLVVNGVSKAYAMTGL-RIGYAAGALSLIKSMIVLQ----GQQTSGACSIAQWAAVEALNGPQDFVVNNRKIFE  299 (400)
Q Consensus       225 ~~~~~~~i~~~S~SK~~~~~G~-RiG~~v~~~~li~~l~~~~----~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~  299 (400)
                      |+     ++  +++|.++ .|+ -+|.+++.+++.+.+..-.    ...+.+.+.+...++.+.|+.-++  ++..+..+
T Consensus       262 PD-----iv--~~gKgl~-gG~~Pl~a~~~~~~i~~~~~~~~~~~~hg~T~~gnpla~aaa~a~L~~i~~--~~l~~~~~  331 (443)
T PRK07483        262 PD-----LL--TIAKGLG-AGYQPIGAVLASDRIYDAIADGSGFFQHGHTYLGHATACAAALAVQRVIAE--DGLLANVR  331 (443)
T ss_pred             CC-----CE--EECCCCC-CCCCCEEEEEECHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH--CCHHHHHH
T ss_conf             98-----10--1333224-887732799756899975436875334588888998999999999999986--46999999


Q ss_pred             CCCCCHHHHH----HCCCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCC--CC-CC
Q ss_conf             0000002455----30477603302740899862641023321133224898999999998739799835022--89-97
Q gi|254780602|r  300 YRRDLCVAQL----QGVPGIRYMIPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSF--GH-GP  372 (400)
Q Consensus       300 ~~r~~~~~~L----~~~~g~~~~~p~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~F--g~-~~  372 (400)
                      ++-+++.+.|    ++.+.+.-++..| +++=+++-.......+..........+..+ +.+.|+++.|+...  |. .+
T Consensus       332 ~~g~~l~~~L~~l~~~~p~I~dVRG~G-Lm~gielv~~~~~~~~~d~~~~~~~~i~~~-~~~~Gll~~~~g~~~~g~~~~  409 (443)
T PRK07483        332 ARGEQLRARLRERLGQHPHVGDIRGRG-LFVGVELVADRATKAPFDPALKLHARIKRE-AMARGLMVYPMGGTIDGVRGD  409 (443)
T ss_pred             HHHHHHHHHHHHHHHCCCCEEEEECCE-EEEEEEEECCCCCCCCCCHHHHHHHHHHHH-HHHCCCEEEECCCCCCCCCCC
T ss_conf             999999999999986499778854041-489999732676567777568999999999-997895898777764577699


Q ss_pred             EEEEE--EECCHHHHHHHHHHHHHHHHH
Q ss_conf             28999--629999999999999999986
Q gi|254780602|r  373 SIRIS--YAVSDAILEEACVRIKRFCHS  398 (400)
Q Consensus       373 ~iRis--~~~~~e~l~~al~rl~~~l~~  398 (400)
                      .|||.  +..+++++++++++|.+.|++
T Consensus       410 ~i~l~PPL~it~~eid~~i~~l~~aL~~  437 (443)
T PRK07483        410 HVLLAPPFIITAQQIDEIVERLGDAIDA  437 (443)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             8999899628999999999999999999


No 229
>PRK07046 aminotransferase; Validated
Probab=99.50  E-value=3.2e-13  Score=100.56  Aligned_cols=339  Identities=17%  Similarity=0.133  Sum_probs=173.6

Q ss_pred             CCCEEECCCCCC--CCC-CCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             997266565897--498-89999999999983887569987789899999999864210133332233233454333322
Q gi|254780602|r   30 GIDVLCLTAGEP--DFD-MPENVKYAVVRAMERGETKYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFN  106 (400)
Q Consensus        30 g~~ii~l~~G~p--~~~-~p~~i~~a~~~al~~~~~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l~~  106 (400)
                      |+..||+..|.-  .+. -+|.|.+|+.+.++.+.+-..+.    +....+|+.+.+++++    +.+.+++.++++...
T Consensus        73 G~~YiD~~~g~~~~~lGH~~p~v~~Av~~q~~~g~~~~~~~----~~~~~lae~l~~~~~~----~~~~f~~sGsEA~~~  144 (452)
T PRK07046         73 GHRYVDFCLGDTGAMFGHSPAPVARALAEQARRGLTTMLPS----EDAAWVGEELARRFGL----PYWQVATTASDANRF  144 (452)
T ss_pred             CCEEEECCHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCC----HHHHHHHHHHHHHHCC----CEEEEECCHHHHHHH
T ss_conf             99998856115512157799999999999987255455785----7999999998987388----617753779999999


Q ss_pred             CCCC---CCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCC--------CCCCCCC--CCHHHHHHCCCCCC-CCCEEE
Q ss_conf             2222---23322322223333232222--2222222222222--------2222322--21033310001221-220121
Q gi|254780602|r  107 ALMA---TVNMGDEVLIPRPYWVSYPD--MVALCGGIPVFVD--------TQQDDNF--QVSPEKLEQAITPK-TKWLFL  170 (400)
Q Consensus       107 ~~~~---~~~~Gd~Vlv~~P~y~~y~~--~~~~~g~~~~~v~--------~~~~~~~--~~d~~~l~~~i~~~-~k~i~l  170 (400)
                      +++.   .+.+ ++|+...-+|-....  .....+..+.+.+        .......  .-|++.+++.+.+. +-+|+ 
T Consensus       145 AirlAR~~TgR-~~Ii~f~g~YHG~~d~~~~~~~~g~~~~~~~~~g~~~~~~~~~~~~~~nd~~~le~~l~~~~iAAvi-  222 (452)
T PRK07046        145 VLRWARAATGR-KKILVFNGCYHGTVDDVFVDLADGRPVQRPGLLGQVHDLTATTRVVEFNDLAALEAALADGDVACVL-  222 (452)
T ss_pred             HHHHHHHCCCC-CEEEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEECCCCCHHHHHHHHCCCCEEEEE-
T ss_conf             99998645499-7699963676786057898647998667898889887767764301668789999971789867999-


Q ss_pred             CCC--CCCCCCCCCC-CCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCC
Q ss_conf             135--4210000123-3332111223333320111012211000001223322211123332257414654432234454
Q gi|254780602|r  171 NSP--SNPSGVVYSQ-NRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTGLR  247 (400)
Q Consensus       171 ~nP--~NPTG~v~s~-~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~~~G~R  247 (400)
                      .-|  .| .|.+.+. +.++++-++| +++++++|.||+.. +...-........+.|+     ++  +++|..+ .|+-
T Consensus       223 ~EPi~g~-~G~i~p~~~fl~~lrelc-~~~giLLI~DEV~T-~r~g~Gg~~~~~Gv~PD-----l~--t~gK~ig-gG~P  291 (452)
T PRK07046        223 AEPAMTN-IGMVLPEPGFWEALRELT-RRHGTLLVIDETHT-ISSGPGGYTRAHGLEPD-----FL--VVGKPIA-GGVP  291 (452)
T ss_pred             EECCCCC-CCCCCCCHHHHHHHHHHH-HHCCEEEEEECCCC-CCCCCCHHHHHHCCCCC-----EE--EEHHHHC-CCCC
T ss_conf             9768867-887579999999999999-75897999936661-00168538798687966-----67--6444312-8886


Q ss_pred             CCCCCCHHHHHHHHHHHCCC---------CCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCHHHHHHCC---C
Q ss_conf             44221101226875310012---------22332222222222223467--6432222221100000002455304---7
Q gi|254780602|r  248 IGYAAGALSLIKSMIVLQGQ---------QTSGACSIAQWAAVEALNGP--QDFVVNNRKIFEYRRDLCVAQLQGV---P  313 (400)
Q Consensus       248 iG~~v~~~~li~~l~~~~~~---------~~~~~~~~~q~a~~~~l~~~--~~~~~~~~~~~~~~r~~~~~~L~~~---~  313 (400)
                      +|.+.+.+++.+.+......         .+.+.+.++..|+.+.|+.-  ++.+++    .++.-+.+.+.|+++   .
T Consensus       292 ~ga~~~~~~i~~~~~~~~~~~~~g~~~~ggTf~gnpla~AAa~A~L~~l~~~~~~~~----~~~~g~~L~~gL~~~~~~~  367 (452)
T PRK07046        292 CAVYGFSAALAERARAAKASAPPGHSGIGTTLSANALAMAAMRATLAEVMTDAAYAH----MFALAARLAAGLRATIARH  367 (452)
T ss_pred             EEEECCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHH----HHHHHHHHHHHHHHHHHHC
T ss_conf             343402599998887521456787568788878798999999999999955529999----9999999999999999867


Q ss_pred             CCEE-EECCCCEEEEEECCCCCCCCCCCCCCCCCH--HHHHHHHHHHCCEEEECCCCCCCCCEEEEEEECCHHHHHHHHH
Q ss_conf             7603-302740899862641023321133224898--9999999987397998350228997289996299999999999
Q gi|254780602|r  314 GIRY-MIPDGAFYLYPSCQDLIGKKSPSGDVIRTD--LDFVNGLLEIEKVAVVQGSSFGHGPSIRISYAVSDAILEEACV  390 (400)
Q Consensus       314 g~~~-~~p~g~~y~~~~~~~~~~~~~~~~~~~~~~--~~~~~~Ll~~~gV~v~pG~~Fg~~~~iRis~~~~~e~l~~al~  390 (400)
                      ++.+ ..--|+++.+.=.+................  ..+...+ .+.||.+.|..     +.+.+|...+++++++.++
T Consensus       368 ~~~~~v~g~G~~~~~~f~~~~~~~~~~~~~~~d~~~~~~~~~~l-l~rGVll~p~~-----n~~~~sp~~T~edID~~v~  441 (452)
T PRK07046        368 GLPWHVTRIGARVEFQFAPTPPRNGAEAGAALDGELEHALHLYL-LNRGVLITPFH-----NMMLVCPQTTAEDVDRLVA  441 (452)
T ss_pred             CCCEEEEEECCEEEEEEECCCCCCHHHHHHCCCHHHHHHHHHHH-HHCCEEECCCC-----CCEEECCCCCHHHHHHHHH
T ss_conf             99759975574689996078875678887443399999999999-97995588767-----5477864489999999999


Q ss_pred             HHHHHHHHC
Q ss_conf             999999860
Q gi|254780602|r  391 RIKRFCHSL  399 (400)
Q Consensus       391 rl~~~l~~l  399 (400)
                      .+++.+.+|
T Consensus       442 a~~~al~el  450 (452)
T PRK07046        442 AFDACLGEL  450 (452)
T ss_pred             HHHHHHHHH
T ss_conf             999999985


No 230
>PRK07482 hypothetical protein; Provisional
Probab=99.49  E-value=8.3e-13  Score=98.06  Aligned_cols=349  Identities=13%  Similarity=0.113  Sum_probs=176.5

Q ss_pred             HCCCCEEECCCCC--CCCC-CCHHHHHHHHHHHHCCCC--CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf             8699726656589--7498-899999999999838875--6998778989999999986421013333223323345433
Q gi|254780602|r   28 SKGIDVLCLTAGE--PDFD-MPENVKYAVVRAMERGET--KYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKH  102 (400)
Q Consensus        28 ~~g~~ii~l~~G~--p~~~-~p~~i~~a~~~al~~~~~--~Y~~~~G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~  102 (400)
                      ..|++.+|+..|-  ..+. -+|.|.+|+++.+++-.+  .|... + .+.+..+|+.+.+...-  .-+.|.+++++++
T Consensus        47 ~dG~~ylD~~~g~~~~~lGH~~p~v~~Ai~~Q~~~l~~~~~~~~~-~-~~~~~~lAe~L~~~~p~--~l~~v~f~~SGSE  122 (461)
T PRK07482         47 HQGRRYIDAFAGLYCVNVGYGRTEVAEAIAEQAKELAYYHTYVGH-G-TEASIELSKRIIDRAPA--GMSKVYYGLSGSD  122 (461)
T ss_pred             CCCCEEEECCCCHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCC-C-CHHHHHHHHHHHHHCCC--CCCEEEECCCHHH
T ss_conf             999999996635886425769499999999999658761146775-6-88999999999975788--8687996186699


Q ss_pred             CCCCCCCCC-------CCCC-CCCCCCCCCCCCCCCCC-CCCC--------------CCCCCCCC----CC----CCCCC
Q ss_conf             332222222-------3322-32222333323222222-2222--------------22222222----22----23222
Q gi|254780602|r  103 VIFNALMAT-------VNMG-DEVLIPRPYWVSYPDMV-ALCG--------------GIPVFVDT----QQ----DDNFQ  151 (400)
Q Consensus       103 ~l~~~~~~~-------~~~G-d~Vlv~~P~y~~y~~~~-~~~g--------------~~~~~v~~----~~----~~~~~  151 (400)
                      |...++...       .+++ .+|+...-+|-.....+ ...|              ......|.    .+    +..|.
T Consensus       123 AvE~AiKlAr~y~~~~g~~~r~~Iis~~~syHG~T~~a~s~tg~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~  202 (461)
T PRK07482        123 ANETQIKLVWYYNNVLGRPEKKKIISRWRGYHGSGIVTGSLTGLSLFHQHFDLPIDRVLHTEAPHYYRRADAGMSEEQFS  202 (461)
T ss_pred             HHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCHHHHH
T ss_conf             99999999999988618876545999617855675313002466333466679987832246885456788663377778


Q ss_pred             -CHHHHHHCCCCC----CCCCEEECCC-CCCCCCCC-CCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC-CCCCC
Q ss_conf             -103331000122----1220121135-42100001-2333321112233333201110122110000012233-22211
Q gi|254780602|r  152 -VSPEKLEQAITP----KTKWLFLNSP-SNPSGVVY-SQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFS-NIVNV  223 (400)
Q Consensus       152 -~d~~~l~~~i~~----~~k~i~l~nP-~NPTG~v~-s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~-s~~~~  223 (400)
                       ...+++++.+..    +.-+|+ .-| +.-.|.+. +++-+++|.++| +++|+++|.||+...|.=.|.-+. .-..+
T Consensus       203 ~~~~~~le~~i~~~~~~~iAAvI-~EPi~g~gG~~~p~~~yl~~lr~lc-~~~gilLI~DEV~tGfGRtG~~fa~e~~gv  280 (461)
T PRK07482        203 AYCADELEELILAEGPDTIAAFI-GEPVLGTGGIVPPPAGYWEAIQAVL-KKYDILLIADEVVTGFGRLGSMFGSQHYGI  280 (461)
T ss_pred             HHHHHHHHHHHHHHCCCCEEEEE-ECCCCCCCCCCCCCHHHHHHHHHHH-HCCCCEEEECCCEECCCCCCCCCHHCCCCC
T ss_conf             99999999999850988489998-0563576885518878979999996-245963771544324750358411116899


Q ss_pred             CCCCCCEEEEECCCCCCCCCCC-CCCCCCCCHHHHHHHHHHHC-------CCCCCCCCCCCCCCCCCCCCCC--CCCCCC
Q ss_conf             1233322574146544322344-54442211012268753100-------1222332222222222223467--643222
Q gi|254780602|r  224 EPSLYERTLVVNGVSKAYAMTG-LRIGYAAGALSLIKSMIVLQ-------GQQTSGACSIAQWAAVEALNGP--QDFVVN  293 (400)
Q Consensus       224 ~~~~~~~~i~~~S~SK~~~~~G-~RiG~~v~~~~li~~l~~~~-------~~~~~~~~~~~q~a~~~~l~~~--~~~~~~  293 (400)
                      .|+     |+  +++|..+ .| .-+|.+++.+++.+.+..-.       ...+.+.+.+...++.+.|+.-  ++.+++
T Consensus       281 ~PD-----iv--~~gKgl~-gG~~Pl~av~~~~~i~~~~~~~~~~~~~~~h~~T~~GnPlacAaa~a~L~~l~~~~l~~~  352 (461)
T PRK07482        281 EPD-----LI--TIAKGLT-SAYAPLSGSIVGEKVWDVLEQGSDEHGAMGHGWTYSGHPICAAAALANLDILERENLVGN  352 (461)
T ss_pred             CCC-----EE--EECCCCC-CCCCCEEEEEECHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHH
T ss_conf             997-----77--6324445-776762799856889987632654466640156899998999999999999830629999


Q ss_pred             CCCCCCCCCCCHHHHH----HCCCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCC
Q ss_conf             2221100000002455----304776033027408998626410233211332248989999999987397998350228
Q gi|254780602|r  294 NRKIFEYRRDLCVAQL----QGVPGIRYMIPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFG  369 (400)
Q Consensus       294 ~~~~~~~~r~~~~~~L----~~~~g~~~~~p~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg  369 (400)
                      .    +++-+++.+.|    ++.+.+.=++..| +++=+++-.......+......-...++.. +.+.|+++..+.   
T Consensus       353 ~----~~~G~~l~~~L~~~~~~~p~v~~VRG~G-L~~gvelv~~~~~~~~~~~~~~~~~~i~~~-~~~~Gll~~~~~---  423 (461)
T PRK07482        353 A----GEVGAYFRAQLRAAFGGHPLVGEVRGVG-MLAAVEFVADRDDRTFFDPALKIGPQVSAA-ALERGVIARAMP---  423 (461)
T ss_pred             H----HHHHHHHHHHHHHHHHCCCCEEEEEECC-EEEEEEEEECCCCCCCCCHHHHHHHHHHHH-HHHCCCEEEECC---
T ss_conf             9----9999999999999985499878888067-589999950565466667457999999999-997898896059---


Q ss_pred             CCCEEEEE--EECCHHHHHHHHHHHHHHHHHC
Q ss_conf             99728999--6299999999999999999860
Q gi|254780602|r  370 HGPSIRIS--YAVSDAILEEACVRIKRFCHSL  399 (400)
Q Consensus       370 ~~~~iRis--~~~~~e~l~~al~rl~~~l~~l  399 (400)
                      ..+-+|++  +..+++++++++++|.+.|+.+
T Consensus       424 ~g~vl~~~PPL~Is~~eid~~~~~l~~al~~v  455 (461)
T PRK07482        424 HGDILGFAPPLVLTRAEADEIVAIAAKAVDEV  455 (461)
T ss_pred             CCCEEEEECCEECCHHHHHHHHHHHHHHHHHH
T ss_conf             99989997994088999999999999999999


No 231
>PRK00451 glycine dehydrogenase subunit 1; Validated
Probab=99.49  E-value=3.1e-13  Score=100.69  Aligned_cols=343  Identities=16%  Similarity=0.178  Sum_probs=192.0

Q ss_pred             HHHHHHHHHHHHHCCCC----EEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCC-----CCCCHHHHHHHHHHHHHHCC
Q ss_conf             99999999999986997----2665658974988999999999998388756998-----77898999999998642101
Q gi|254780602|r   16 TLVAAQRVRDLRSKGID----VLCLTAGEPDFDMPENVKYAVVRAMERGETKYTA-----VAGISPLREAIVEKFRRDND   86 (400)
Q Consensus        16 ~~~~~~~~~~~~~~g~~----ii~l~~G~p~~~~p~~i~~a~~~al~~~~~~Y~~-----~~G~~~lR~aia~~~~~~~g   86 (400)
                      -.++....+.+.+++..    +..++.|-.+.-.|+.+ +.+... .+-.+.|+|     +||..++--.....+.+..|
T Consensus        49 E~e~~rh~~~ls~kN~~~~~~~~flG~G~y~~~~P~~v-~~i~~r-~ef~TaytPYQpE~sQG~Lq~l~e~Q~~l~eLtG  126 (449)
T PRK00451         49 EMEVLRELRELAAKNRTAEEYPSFLGAGAYDHYIPAAV-DHIISR-SEFYTAYTPYQPEISQGTLQAIFEYQTMICELTG  126 (449)
T ss_pred             HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHH-HHHHHC-CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             99999999999964758675766064031578686999-998738-6521146899831113999999999999999859


Q ss_pred             CCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----CCCCCCCCCCCCCCCCCCCCCHHHHHHC
Q ss_conf             333322332334543---333222222233223222233332322222----2222222222222222322210333100
Q gi|254780602|r   87 LHYTSDQIIVGTGAK---HVIFNALMATVNMGDEVLIPRPYWVSYPDM----VALCGGIPVFVDTQQDDNFQVSPEKLEQ  159 (400)
Q Consensus        87 ~~~~~e~I~it~G~~---~~l~~~~~~~~~~Gd~Vlv~~P~y~~y~~~----~~~~g~~~~~v~~~~~~~~~~d~~~l~~  159 (400)
                      +++..-...  .|++   +|+.++.+.  +..++|+|++-..|.+...    +...|.+++.++.++++  .+|+++|++
T Consensus       127 md~~nasl~--dga~a~~ea~~ma~r~--~~r~~vlv~~s~hP~~~~v~~t~a~~~g~~vv~v~~~~~g--~~Dl~~L~~  200 (449)
T PRK00451        127 MDVANASMY--DGATALAEAALMAVRI--TGRNKVLVSGAVHPEYREVLKTYLKGQGIEVVEVPYPEDG--VTDLEALEA  200 (449)
T ss_pred             CCCCCCCCC--CHHHHHHHHHHHHHHH--CCCCEEEECCCCCCCHHHHHHHHCCCCCCEEEEECCCCCC--CCCHHHHHH
T ss_conf             874677877--4778999999999864--2687399779878427999986301578427984577566--668899986


Q ss_pred             CCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCC-CCCCCEEEEEC---
Q ss_conf             01221220121135421000012333321112233333201110122110000012233222111-23332257414---
Q gi|254780602|r  160 AITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVE-PSLYERTLVVN---  235 (400)
Q Consensus       160 ~i~~~~k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~-~~~~~~~i~~~---  235 (400)
                      .+++++-++++.||| -.|.+   +++++|++++ ++.+.+++.   +.+.       .++.-+. |+-..--|+++   
T Consensus       201 ~~~~~~A~vmi~~Pn-t~G~~---edi~~i~~~v-h~~g~l~~~---~~n~-------~aLg~l~~PGe~GaDIvvg~~q  265 (449)
T PRK00451        201 AVDDDTAAVVVQYPN-FFGVI---EDLEEIAEIA-HAGGALFIV---VVDP-------VSLGLLKPPGEYGADIVVGEGQ  265 (449)
T ss_pred             HCCCCEEEEEEECCC-CCCCC---CCHHHHHHHH-HHCCCEEEE---EECH-------HHHHCCCCCCCCCCCEEEECCC
T ss_conf             417875899985588-77753---1699999999-865974999---7167-------8860767844345406862476


Q ss_pred             --CCCCCCCCCCCCCCCCCCHHHHHHHHHHH----------------------------CCCCCCCCCC-CCCCCCC-CC
Q ss_conf             --65443223445444221101226875310----------------------------0122233222-2222222-22
Q gi|254780602|r  236 --GVSKAYAMTGLRIGYAAGALSLIKSMIVL----------------------------QGQQTSGACS-IAQWAAV-EA  283 (400)
Q Consensus       236 --S~SK~~~~~G~RiG~~v~~~~li~~l~~~----------------------------~~~~~~~~~~-~~q~a~~-~~  283 (400)
                        +.-|+||-|+  .|++.+.+++.+.+-..                            +....+|.+. +...++. .+
T Consensus       266 ~lg~p~~fGGP~--~G~~a~~~~l~r~lPgriVG~t~D~~G~~~y~LtLqtREQhIrReKAtSnIctnq~l~a~~a~~Yi  343 (449)
T PRK00451        266 PLGIPLSFGGPY--LGFFATRKKLVRQMPGRLVGETVDVDGKRGFVLTLQAREQHIRREKATSNICTNQALCALAATIYM  343 (449)
T ss_pred             CCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCHHHCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf             667786678998--787055650010289876672136788612011345532223455554666642278899999999


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEE-
Q ss_conf             3467643222222110000000245530477603302740899862641023321133224898999999998739799-
Q gi|254780602|r  284 LNGPQDFVVNNRKIFEYRRDLCVAQLQGVPGIRYMIPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAV-  362 (400)
Q Consensus       284 l~~~~~~~~~~~~~~~~~r~~~~~~L~~~~g~~~~~p~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v-  362 (400)
                      ...+.+-+++..+.-..+.+++.+.|++++|++..-+ +.||-     ++.      .....+..+++++|+++ |+.- 
T Consensus       344 ~~lG~~GLk~va~~a~~nAnyl~~~L~~~~~~~~~~~-~~~f~-----Efv------~~~~~~a~~i~k~L~~~-gi~~g  410 (449)
T PRK00451        344 SLLGKEGLREVAEQNHQKAHYLAERLAEIGGVEVLFN-GPFFN-----EFV------VRLPKPAEEVNEALLEK-GILGG  410 (449)
T ss_pred             HHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCC-CCEEE-----EEE------EECCCCHHHHHHHHHHC-CCCCC
T ss_conf             9759766999999999999999999873798341689-98025-----899------97898899999999976-99789


Q ss_pred             ECCCCCCC--CCEEEEEEE--CCHHHHHHHHHHHHHHH
Q ss_conf             83502289--972899962--99999999999999999
Q gi|254780602|r  363 VQGSSFGH--GPSIRISYA--VSDAILEEACVRIKRFC  396 (400)
Q Consensus       363 ~pG~~Fg~--~~~iRis~~--~~~e~l~~al~rl~~~l  396 (400)
                      .|-+.+.+  ++.+=|+.+  .+.++|++-++.|++.+
T Consensus       411 ~~lt~~~p~~~~~lmi~~TEt~sk~dlD~~v~al~eil  448 (449)
T PRK00451        411 YDLGRYYPELGNSLLVAVTELRTKEDIDALVEALGEVL  448 (449)
T ss_pred             CCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHH
T ss_conf             88544277889979997078999999999999999986


No 232
>PRK07481 hypothetical protein; Provisional
Probab=99.49  E-value=4e-13  Score=99.97  Aligned_cols=349  Identities=16%  Similarity=0.154  Sum_probs=177.8

Q ss_pred             CCCCEEECCCCC--CCCC-CCHHHHHHHHHHHHCCCCCCCCCCC-CHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf             699726656589--7498-8999999999998388756998778-98999999998642101333322332334543333
Q gi|254780602|r   29 KGIDVLCLTAGE--PDFD-MPENVKYAVVRAMERGETKYTAVAG-ISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVI  104 (400)
Q Consensus        29 ~g~~ii~l~~G~--p~~~-~p~~i~~a~~~al~~~~~~Y~~~~G-~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l  104 (400)
                      .|++.||+..|.  ..+. -.|.|.+|+++.++...+ +....| .-+.+..+|+.+..... +-+-+.|++++++++|.
T Consensus        40 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~-~~~~~~~~~~~~~~la~~L~~~~~-p~~~~rv~f~~SGseA~  117 (448)
T PRK07481         40 DGKKLLDGVGGLWNVNVGHNREEVKEAIVRQLDELEY-YSTFDGTTHPRAIELSYKLIDMFE-PEGMRRVFFSSGGSDSV  117 (448)
T ss_pred             CCCEEEECCCCHHHHHHCCCCHHHHHHHHHHHHHCCC-CCCCCCCCCHHHHHHHHHHHHHCC-CCCCCEEEECCCHHHHH
T ss_conf             8899999543588633257979999999999965677-136664468899999999998518-77878899749779999


Q ss_pred             CCCCCCCC-------CCC-CCCCCCCCCCCCCC-CCCCCCCC--------------CCCCCCCCCCCCCCCHHH------
Q ss_conf             22222223-------322-32222333323222-22222222--------------222222222232221033------
Q gi|254780602|r  105 FNALMATV-------NMG-DEVLIPRPYWVSYP-DMVALCGG--------------IPVFVDTQQDDNFQVSPE------  155 (400)
Q Consensus       105 ~~~~~~~~-------~~G-d~Vlv~~P~y~~y~-~~~~~~g~--------------~~~~v~~~~~~~~~~d~~------  155 (400)
                      ..+++..-       ++| .+|+...-+|-.-. ......|.              ..++.|....+-|.-|++      
T Consensus       118 E~AiKlAr~y~~~~g~~~r~~Ii~~~~syHG~t~g~~s~sg~~~~~~~~~~~~~~~~~~~~p~~~~~p~~~~~~~~~~~~  197 (448)
T PRK07481        118 ETALKLARQYWKVRGQPERTKFISLKQGYHGTHFGGASVNGNTVFRRNYEPLLPGCFHVETPWLYRNPFTQDPEELGRLC  197 (448)
T ss_pred             HHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCHHHHCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHH
T ss_conf             99999999999971898863699636863776622121468843446888999982782687522377789989999999


Q ss_pred             --HHHCCCC----CCCCCEEECCC-CCCCCCC-CCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC-CCCCCCCC
Q ss_conf             --3100012----21220121135-4210000-12333321112233333201110122110000012233-22211123
Q gi|254780602|r  156 --KLEQAIT----PKTKWLFLNSP-SNPSGVV-YSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFS-NIVNVEPS  226 (400)
Q Consensus       156 --~l~~~i~----~~~k~i~l~nP-~NPTG~v-~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~-s~~~~~~~  226 (400)
                        .+++.+.    ++.-++++ -| +.-.|.+ .+++.+++|.++| +++|+++|.||++..+.=.|.-+. .-..+.|+
T Consensus       198 ~~~le~~i~~~~~~~iAavi~-EPiqg~gG~~~p~~~yl~~lr~lc-~~~gillI~DEV~tGfGRtG~~fa~e~~gv~PD  275 (448)
T PRK07481        198 ARLLEREIAFQGPDTIAAFIA-EPVQGAGGVIVPPANYWPLVREVC-DRHGILLIADEVVTGFGRTGSWFGSRGWGVKPD  275 (448)
T ss_pred             HHHHHHHHHHCCCCCEEEEEE-ECCCCCCCEECCCHHHHHHHHHHH-HHCCEEEEEEECCCCCCCCCCHHHHHCCCCCCC
T ss_conf             999999987418884799996-046667971459999999999999-977927999514538884763257656899997


Q ss_pred             CCCEEEEECCCCCCCCCCC-CCCCCCCCHHHHHHHHHHHCC-------CCCCCCCCCCCCCCCCCCCCC--CCCCCCCCC
Q ss_conf             3322574146544322344-544422110122687531001-------222332222222222223467--643222222
Q gi|254780602|r  227 LYERTLVVNGVSKAYAMTG-LRIGYAAGALSLIKSMIVLQG-------QQTSGACSIAQWAAVEALNGP--QDFVVNNRK  296 (400)
Q Consensus       227 ~~~~~i~~~S~SK~~~~~G-~RiG~~v~~~~li~~l~~~~~-------~~~~~~~~~~q~a~~~~l~~~--~~~~~~~~~  296 (400)
                           |+  ++||.++ .| +-+|.+++.+++.+.+..-..       ..+.+.+.+...++.+.|+.-  ++.+++.  
T Consensus       276 -----iv--~~gK~lg-gG~~Plsa~~~~~~i~~~~~~~~~~~~~~~hg~T~~gnpla~aaala~L~~i~~~~l~~~~--  345 (448)
T PRK07481        276 -----IM--CLAKGIS-SGYVPLGATMVNARIEDAFEANADFGGAIMHGYTYSGHPVACAAALASLDIVVREDLPANA--  345 (448)
T ss_pred             -----EE--EECCCCC-CCCCCCCHHHCCHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHH--
T ss_conf             -----10--0122435-8977642111568999976568876652100667788979999999999999755699999--


Q ss_pred             CCCCCCCCHHHHHH----CCCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCCCC
Q ss_conf             11000000024553----04776033027408998626410233211332248989999999987397998350228997
Q gi|254780602|r  297 IFEYRRDLCVAQLQ----GVPGIRYMIPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGHGP  372 (400)
Q Consensus       297 ~~~~~r~~~~~~L~----~~~g~~~~~p~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~  372 (400)
                        +++-+.+.+.|+    +.+-+.-++..|-| +-+++-.-...+.+..........++.. +.+.||++.|.     .+
T Consensus       346 --~~~g~~l~~~L~~l~~~~~~i~~VRG~Glm-~~ielv~d~~~~~~~~~~~~~~~~v~~~-~~~~Gll~~~~-----g~  416 (448)
T PRK07481        346 --AKRGAYLLEGLQPLVERFELVGDVRGKGLM-VALDLVADKATRAPIDPSKGYANAVADV-ARENGVLVRPS-----GT  416 (448)
T ss_pred             --HHHHHHHHHHHHHHHHHCCCEEEEEECCEE-EEEEEEECCCCCCCCCCCHHHHHHHHHH-HHHCCEEEEEC-----CC
T ss_conf             --999999999999999848984675522499-9999960665567677127999999999-99699499724-----99


Q ss_pred             EEEEE--EECCHHHHHHHHHHHHHHHHHCC
Q ss_conf             28999--62999999999999999998609
Q gi|254780602|r  373 SIRIS--YAVSDAILEEACVRIKRFCHSLQ  400 (400)
Q Consensus       373 ~iRis--~~~~~e~l~~al~rl~~~l~~l~  400 (400)
                      .+|++  +..+++++++++++|.+.++.+.
T Consensus       417 ~i~~~PpL~it~~eid~~l~~l~~al~~v~  446 (448)
T PRK07481        417 KIILSPPLVIQREDVDRIVDALDAGFAAVP  446 (448)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf             899989978899999999999999999753


No 233
>PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional
Probab=99.49  E-value=8.4e-13  Score=98.04  Aligned_cols=322  Identities=15%  Similarity=0.161  Sum_probs=179.0

Q ss_pred             CHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC----CCC-CCCCC
Q ss_conf             9999999999983887569987789899999999864210133332233233454333322222223----322-32222
Q gi|254780602|r   46 PENVKYAVVRAMERGETKYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFNALMATV----NMG-DEVLI  120 (400)
Q Consensus        46 p~~i~~a~~~al~~~~~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l~~~~~~~~----~~G-d~Vlv  120 (400)
                      .|.|.+|+++.+++.. -|+.... .+.|..+|+.+.....  -+-+.+++++++++|...++...-    ..| .+||.
T Consensus       109 ~P~I~eAv~~Ql~~~~-~~s~~~~-~p~~~~LAe~L~~~~P--~~l~~vFF~nSGSEAvE~AiKlAr~y~~~~Gr~~IIs  184 (468)
T PRK11522        109 NPVVVSAVQNQLAKQP-LHSQELL-DPLRAMLAKTLAALTP--GKLKYSFFCNSGTESVEAALKLAKAYQSPRGKFTFIA  184 (468)
T ss_pred             CHHHHHHHHHHHHHCC-CCCCCCC-CHHHHHHHHHHHHHCC--CCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCEEEE
T ss_conf             9899999999985357-5127727-6699999999997488--8889797379728999999999999777409918999


Q ss_pred             CCCCCCCCCCC-CCCCCCCC---CCCCCCCCCCCC--CHHHHHHCCCC------CCCCCEEECCC-CCCCCCC-CCCCCC
Q ss_conf             33332322222-22222222---222222223222--10333100012------21220121135-4210000-123333
Q gi|254780602|r  121 PRPYWVSYPDM-VALCGGIP---VFVDTQQDDNFQ--VSPEKLEQAIT------PKTKWLFLNSP-SNPSGVV-YSQNRL  186 (400)
Q Consensus       121 ~~P~y~~y~~~-~~~~g~~~---~~v~~~~~~~~~--~d~~~l~~~i~------~~~k~i~l~nP-~NPTG~v-~s~~~l  186 (400)
                      ..-+|-.-... ....|...   -+.|+.++-.+.  .|.+++++.+.      +++-++++ -| +--.|.+ .+++-+
T Consensus       185 ~~~sYHG~T~galS~tg~~~~~~~f~pl~p~~~~vp~~d~~~~~~~~~~~~~~~~~vAAvIv-EPIqG~gGv~~pp~~yl  263 (468)
T PRK11522        185 TSGAFHGKSLGALSATAKSTFRKPFMPLLPGFRHVPFGNIEAMRTALSECKKTGDDVAAVIL-EPIQGEGGVILPPPGYL  263 (468)
T ss_pred             ECCCCCCCCCHHHEECCCHHCCCCCCCCCCCCEECCCCCHHHHHHHHHHHHHCCCCEEEEEE-ECCCCCCCCCCCCHHHH
T ss_conf             71786776422203127621025777899984563789999999999986514896899999-77767789826998999


Q ss_pred             CCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC-CCCCCCCCCCCEEEEECCCCCCCCCCC-CCCCCCCCHHHHHHHHHH-
Q ss_conf             21112233333201110122110000012233-222111233322574146544322344-544422110122687531-
Q gi|254780602|r  187 RALADVLVRNPHVHIISDDIYEHIVYRNCQFS-NIVNVEPSLYERTLVVNGVSKAYAMTG-LRIGYAAGALSLIKSMIV-  263 (400)
Q Consensus       187 ~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~-s~~~~~~~~~~~~i~~~S~SK~~~~~G-~RiG~~v~~~~li~~l~~-  263 (400)
                      ++|-++| +++|+++|.||+...+.=.|.-+. .-..+.|+     |+  +++|.++ .| +-+|.+++.+++.+.+.. 
T Consensus       264 ~~lr~lc-~~~giLLI~DEVqTGfGRTG~~fa~e~~gV~PD-----iv--t~aKgLg-gG~~Pigav~~~~~i~~~~~~~  334 (468)
T PRK11522        264 TAVRKLC-DEFGALMILDEVQTGMGRTGKMFACEHENVQPD-----IL--CLAKALG-GGVMPIGATIATEEVFSVLFDN  334 (468)
T ss_pred             HHHHHHH-HHCCEEEECCCCCCCCCCCCCCCEEECCCCCCC-----EE--EECCCCC-CCCCCEEEEEECHHHHHHHHHC
T ss_conf             9999987-538078822641227886578514523678988-----89--9615555-7877505897629999998517


Q ss_pred             -HCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCHHHHHHCC----CC-CEEEECCCCEEEEEECCCCCC
Q ss_conf             -00122233222222222222346--76432222221100000002455304----77-603302740899862641023
Q gi|254780602|r  264 -LQGQQTSGACSIAQWAAVEALNG--PQDFVVNNRKIFEYRRDLCVAQLQGV----PG-IRYMIPDGAFYLYPSCQDLIG  335 (400)
Q Consensus       264 -~~~~~~~~~~~~~q~a~~~~l~~--~~~~~~~~~~~~~~~r~~~~~~L~~~----~g-~~~~~p~g~~y~~~~~~~~~~  335 (400)
                       .....+.+.+.+...++.+.|+-  .++.+++    .+++-+++.+.|+++    |. +.-++.. |+++=+++.+   
T Consensus       335 ~~~hg~Tf~GnPlacAaala~L~ii~~e~l~~~----a~~~G~~L~~~L~~l~~~~p~~i~dVRG~-GLm~giel~~---  406 (468)
T PRK11522        335 PFLHTTTFGGNPLACAAALATINVLLEQNLPAQ----AEQKGDMLLDGFRQLAREYPDLVQEARGK-GMLMAIEFVD---  406 (468)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHH----HHHHHHHHHHHHHHHHHHCCCCEEEEEEC-CEEEEEEECC---
T ss_conf             774466767997999999999999986459999----99999999999999987686711251003-1699999578---


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCCCCEEEEE--EECCHHHHHHHHHHHHHHHHHCC
Q ss_conf             321133224898999999998739799835022899728999--62999999999999999998609
Q gi|254780602|r  336 KKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGHGPSIRIS--YAVSDAILEEACVRIKRFCHSLQ  400 (400)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~iRis--~~~~~e~l~~al~rl~~~l~~l~  400 (400)
                              ......++..+++ +||++.+...  ..+.||+.  +..+++++++++++|.+.|.+++
T Consensus       407 --------~~~~~~v~~~~~~-~Gvlv~~~~~--~~~~lr~~PPL~It~eeid~~l~~l~~aL~~l~  462 (468)
T PRK11522        407 --------NEIGYNFASEMFR-QRVLVAGTLN--NAKTIRIEPPLTLTIEQCEQVIKAARKALAAMR  462 (468)
T ss_pred             --------CCHHHHHHHHHHH-CCEEEEECCC--CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             --------5008999999997-8919987489--998899959965799999999999999999997


No 234
>PRK05965 hypothetical protein; Provisional
Probab=99.49  E-value=5.8e-13  Score=99.00  Aligned_cols=347  Identities=13%  Similarity=0.123  Sum_probs=175.5

Q ss_pred             CCCCEEECCCCC--CCCC-CCHHHHHHHHHHHHCCC--CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf             699726656589--7498-89999999999983887--569987789899999999864210133332233233454333
Q gi|254780602|r   29 KGIDVLCLTAGE--PDFD-MPENVKYAVVRAMERGE--TKYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHV  103 (400)
Q Consensus        29 ~g~~ii~l~~G~--p~~~-~p~~i~~a~~~al~~~~--~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~  103 (400)
                      .|++.+|+..|-  ..+. -+|.|.+|+++.+++-.  ++|-...-.+  +..+|+.+.+...  -+-++|++++++++|
T Consensus        44 dG~~ylD~~sg~~~~~lGh~hp~v~~Ai~~Q~~~l~~~~~~~~~~~~~--~~~la~~L~~~~p--~~l~~v~f~~SGSEA  119 (459)
T PRK05965         44 SGHQLLDAFAGLWCVNVGYGQESIVEAAAKQMRKLPYATGYFHFGSEP--AIRLAAELAERAP--GSLNHVYFTLGGSDA  119 (459)
T ss_pred             CCCEEEECCHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCHH--HHHHHHHHHHHCC--CCCCEEEEECCHHHH
T ss_conf             999998868628865650597999999999997567735665668669--9999999998578--886879984867999


Q ss_pred             CCCCCCC-------CCCCC-CCCCCCCCCCCCCCCC-CCCCCCC------------CCCCCC--CCCCCC--------CC
Q ss_conf             3222222-------23322-3222233332322222-2222222------------222222--222322--------21
Q gi|254780602|r  104 IFNALMA-------TVNMG-DEVLIPRPYWVSYPDM-VALCGGI------------PVFVDT--QQDDNF--------QV  152 (400)
Q Consensus       104 l~~~~~~-------~~~~G-d~Vlv~~P~y~~y~~~-~~~~g~~------------~~~v~~--~~~~~~--------~~  152 (400)
                      ...++..       -..+| ..|+...-+|-.-... ....+..            ...+|.  .....+        .-
T Consensus       120 vE~AlKlar~y~~a~g~~~r~~ii~~~~syHG~T~~~~slt~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~  199 (459)
T PRK05965        120 VDSAVRFITHYWNATGRPSKKQFIALERGYHGSSSVGAGLTALPAFHRGFDLPLPWQHHIPSPYAYRNPVGDDPQAIIAA  199 (459)
T ss_pred             HHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCHHHHHHH
T ss_conf             99999999999997279987579997178589974310257774322356899998623578865568788977889999


Q ss_pred             HHHHHHCCCC----CCCCCEEECCC-CCCCCCCC-CCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC-CCCCCCC
Q ss_conf             0333100012----21220121135-42100001-2333321112233333201110122110000012233-2221112
Q gi|254780602|r  153 SPEKLEQAIT----PKTKWLFLNSP-SNPSGVVY-SQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFS-NIVNVEP  225 (400)
Q Consensus       153 d~~~l~~~i~----~~~k~i~l~nP-~NPTG~v~-s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~-s~~~~~~  225 (400)
                      +.+++++.+.    +++-++++ -| +.=.|.+. +++-+++|-++| +++|+++|.||+...+.=.|.-+. --..+.|
T Consensus       200 ~~~~l~~~i~~~~~~~vAAvi~-EPi~g~gG~~~pp~~yl~~lr~lc-~~~gillI~DEV~TGfGRtG~~fa~e~~gv~P  277 (459)
T PRK05965        200 SVAALEAKVAELGADNVAAFFC-EPIQGSGGVIVPPKGWLKAMREAC-RELGILFVADEVITGFGRTGPLFACEAEGVVP  277 (459)
T ss_pred             HHHHHHHHHHHHCCCCEEEEEE-CCCCCCCCCCCCCHHHHHHHHHHH-HHCCEEEEEEECCCCCCCCCCCCCCCCCCCCC
T ss_conf             9999999998618875799995-464466885328768879999998-75691799830541776244741003666188


Q ss_pred             CCCCEEEEECCCCCCCCCCC-CCCCCCCCHHHHHHHHHHHC-------CCCCCCCCCCCCCCCCCCCCCC--CCCCCCCC
Q ss_conf             33322574146544322344-54442211012268753100-------1222332222222222223467--64322222
Q gi|254780602|r  226 SLYERTLVVNGVSKAYAMTG-LRIGYAAGALSLIKSMIVLQ-------GQQTSGACSIAQWAAVEALNGP--QDFVVNNR  295 (400)
Q Consensus       226 ~~~~~~i~~~S~SK~~~~~G-~RiG~~v~~~~li~~l~~~~-------~~~~~~~~~~~q~a~~~~l~~~--~~~~~~~~  295 (400)
                      +     |+  +++|.++ .| .-+|.+++.+++.+.+..-.       ...+.+.+.+...++.+.|+.-  ++.+++  
T Consensus       278 D-----iv--~~gKgL~-gG~~Plsav~~~~~i~~~~~~~~~~~~~~~hg~T~~gnpla~Aaa~a~L~~l~~~~l~~~--  347 (459)
T PRK05965        278 D-----LM--TVAKGLT-SGYVPMGAVLMSDHVYQGIADGAGAAAPVGHGYTYSAHPVSAAVGLEVLRLYHEGGLLAN--  347 (459)
T ss_pred             C-----EE--EECCCCC-CCCCCEEEEEECHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHH--
T ss_conf             8-----88--8734345-786751689764899987611566565445677899898999999999999986349999--


Q ss_pred             CCCCCCCCCHHHHHHCC---CCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCCCC
Q ss_conf             21100000002455304---776033027408998626410233211332248989999999987397998350228997
Q gi|254780602|r  296 KIFEYRRDLCVAQLQGV---PGIRYMIPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGHGP  372 (400)
Q Consensus       296 ~~~~~~r~~~~~~L~~~---~g~~~~~p~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~  372 (400)
                        .+++-+++.+.|+++   +-+.=++..|-| +=+++..-.....+..........++.. +.+.|+++.|..    ++
T Consensus       348 --~~~~g~~l~~~L~~L~~~p~i~dVRG~GLm-~gielv~d~~~~~~~~~~~~~~~~i~~~-~~~~Glli~~~g----~~  419 (459)
T PRK05965        348 --GQAAAPRFAAGLDALRAHPLVGDVRGRGLL-GALELVADKASKTPFDAALEPADRIFDR-AYANGLVFRAFG----DG  419 (459)
T ss_pred             --HHHHHHHHHHHHHHHHCCCCEEEEEECCEE-EEEEEECCCCCCCCCCHHHHHHHHHHHH-HHHCCEEEEECC----CC
T ss_conf             --999999999999987649976867825627-9999712654466775547999999999-996992998079----99


Q ss_pred             EEEEE--EECCHHHHHHHHHHHHHHHHHC
Q ss_conf             28999--6299999999999999999860
Q gi|254780602|r  373 SIRIS--YAVSDAILEEACVRIKRFCHSL  399 (400)
Q Consensus       373 ~iRis--~~~~~e~l~~al~rl~~~l~~l  399 (400)
                      -+|++  +..+++++++++++|.+.++.+
T Consensus       420 vl~l~PPL~It~~eid~~~~~l~~al~ev  448 (459)
T PRK05965        420 VLGFAPALCCTEGEFDLIFERTRKTLDDV  448 (459)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             89997882089999999999999999999


No 235
>PRK08088 4-aminobutyrate aminotransferase; Validated
Probab=99.49  E-value=7.2e-13  Score=98.44  Aligned_cols=350  Identities=13%  Similarity=0.121  Sum_probs=180.9

Q ss_pred             HCCCCEEECCCCCC--CCC-CCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf             86997266565897--498-899999999999838875699877898999999998642101333322332334543333
Q gi|254780602|r   28 SKGIDVLCLTAGEP--DFD-MPENVKYAVVRAMERGETKYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVI  104 (400)
Q Consensus        28 ~~g~~ii~l~~G~p--~~~-~p~~i~~a~~~al~~~~~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l  104 (400)
                      ..|++.+|+..|.-  .+. -+|.|.+|+.+.++.-.+......+. +-+.++|+.+.+...-+. .+.+++++++++|.
T Consensus        39 ~dG~~YLD~~~g~~~~~lGH~hp~i~~Av~~q~~~l~~~~~~~~~~-~~~~~lae~l~~~~p~~~-~~~v~f~~sGsEAv  116 (426)
T PRK08088         39 VEGREYIDFAGGIAVLNTGHLHPKVVAAVEAQLKKLSHTCFQVLAY-EPYLELCEKMNQKVPGDF-AKKTLLVTTGSEAV  116 (426)
T ss_pred             CCCCEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCC-HHHHHHHHHHHHHCCCCC-CCEEEECCCHHHHH
T ss_conf             9989999915168865108996999999999986478856775566-799999999998577555-65588549769999


Q ss_pred             CCCCCCCC-CCC-CCCCCCCCCCCCCCCCC-CCCCC---------------CCCCCCCCCCCCC-CCHHHHHHCCCC---
Q ss_conf             22222223-322-32222333323222222-22222---------------2222222222322-210333100012---
Q gi|254780602|r  105 FNALMATV-NMG-DEVLIPRPYWVSYPDMV-ALCGG---------------IPVFVDTQQDDNF-QVSPEKLEQAIT---  162 (400)
Q Consensus       105 ~~~~~~~~-~~G-d~Vlv~~P~y~~y~~~~-~~~g~---------------~~~~v~~~~~~~~-~~d~~~l~~~i~---  162 (400)
                      ..+++.-- ..| ..|+...-+|......+ ...|.               ....+|....+-. .-+.+.+++.+.   
T Consensus       117 e~AiklAR~~tgr~~ii~~~~syHG~t~~a~s~tg~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~  196 (426)
T PRK08088        117 ENAVKIARAATKRSGVIAFTGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGVSEDDAIASIERIFKNDA  196 (426)
T ss_pred             HHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf             99999987764366636635774898521254248877766778899987402668862357881679999999997447


Q ss_pred             --CCCCCEEECCC-CCCCCC-CCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC-CCCCCCCCCCCEEEEECCC
Q ss_conf             --21220121135-421000-012333321112233333201110122110000012233-2221112333225741465
Q gi|254780602|r  163 --PKTKWLFLNSP-SNPSGV-VYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFS-NIVNVEPSLYERTLVVNGV  237 (400)
Q Consensus       163 --~~~k~i~l~nP-~NPTG~-v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~-s~~~~~~~~~~~~i~~~S~  237 (400)
                        ++.-++++ -| +.-.|. +.+++.++++.++| +++|+++|.||+...+.=.|.-+. .-..+.|+     |+  ++
T Consensus       197 ~~~~iAAvi~-EPi~g~gG~~~~~~~yl~~lr~lc-~~~g~llI~DEV~tGfGRtG~~fa~~~~gv~PD-----ii--~~  267 (426)
T PRK08088        197 APEDIAAIII-EPVQGEGGFYAASPAFMQRLRALC-DQHGIMLIADEVQTGAGRTGTFFAMEQMGVAAD-----LT--TF  267 (426)
T ss_pred             CCCCEEEEEE-CCCCCCCCCEECCHHHHHHHHHHH-HHCCCEEECCCCCCCCCCCCCHHHHHHCCCCCC-----EE--EH
T ss_conf             8776789997-775677886638879999999999-876905876330228776674135664198976-----20--12


Q ss_pred             CCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCHHHHHHC----
Q ss_conf             44322344544422110122687531001222332222222222223467--643222222110000000245530----
Q gi|254780602|r  238 SKAYAMTGLRIGYAAGALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGP--QDFVVNNRKIFEYRRDLCVAQLQG----  311 (400)
Q Consensus       238 SK~~~~~G~RiG~~v~~~~li~~l~~~~~~~~~~~~~~~q~a~~~~l~~~--~~~~~~~~~~~~~~r~~~~~~L~~----  311 (400)
                      +|..+ .|+-+|.+++.+++.+.+..-....+.+.+.+...++.+.|+.-  ++.+++.    ++.-+++.+.|++    
T Consensus       268 gK~l~-gG~Plsav~~~~~i~~~~~~~~~~~T~~gnpla~Aaa~a~L~~l~~e~l~~~~----~~~G~~l~~~L~~l~~~  342 (426)
T PRK08088        268 AKSIA-GGFPLAGVTGRAEVMDAIAPGGLGGTYAGNPIACAAALAVLEVFEEENLLQRA----NALGERLKDGLLAIAEK  342 (426)
T ss_pred             HHHHC-CCCCCCCEEECHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHH----HHHHHHHHHHHHHHHHH
T ss_conf             14403-88875000003999953368887888898989999999999999865899999----99999999999999860


Q ss_pred             CCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCCCCEEEEE--EECCHHHHHHHH
Q ss_conf             477603302740899862641023321133224898999999998739799835022899728999--629999999999
Q gi|254780602|r  312 VPGIRYMIPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGHGPSIRIS--YAVSDAILEEAC  389 (400)
Q Consensus       312 ~~g~~~~~p~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~iRis--~~~~~e~l~~al  389 (400)
                      .|.+.-++..| +++=+++-+-.....+.   .....+++.++ .+.|+++.++-.+  .+-||+.  +..+++++++++
T Consensus       343 ~p~i~~VRG~G-Lm~gvelv~~~~~~~p~---~~~~~~i~~~~-~~~Gll~~~~g~~--gnvir~~PPL~it~~eid~~~  415 (426)
T PRK08088        343 HPEIGDVRGLG-AMIAIELFEDGDHSKPA---AKLTAQIVARA-RDKGLILLSCGTY--YNVLRILVPLTIEDAQIRQGL  415 (426)
T ss_pred             CCCEEEEEECC-EEEEEEEEECCCCCCCC---HHHHHHHHHHH-HHCCCEEEECCCC--CCEEEEECCEECCHHHHHHHH
T ss_conf             99889999445-59999986068767878---99999999999-9689999833899--998999789347899999999


Q ss_pred             HHHHHHHHHCC
Q ss_conf             99999998609
Q gi|254780602|r  390 VRIKRFCHSLQ  400 (400)
Q Consensus       390 ~rl~~~l~~l~  400 (400)
                      +.|.+.|+.-|
T Consensus       416 ~~l~~al~ea~  426 (426)
T PRK08088        416 EIIAQCFDEAK  426 (426)
T ss_pred             HHHHHHHHHHC
T ss_conf             99999999539


No 236
>PRK09792 PLP-dependent GABA aminotransferase; Provisional
Probab=99.49  E-value=9.3e-13  Score=97.78  Aligned_cols=341  Identities=15%  Similarity=0.139  Sum_probs=176.8

Q ss_pred             CCCCEEECCCCCC--CCC-CCHHHHHHHHHHHHCCCCCCCCCCCCH-HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf             6997266565897--498-899999999999838875699877898-999999998642101333322332334543333
Q gi|254780602|r   29 KGIDVLCLTAGEP--DFD-MPENVKYAVVRAMERGETKYTAVAGIS-PLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVI  104 (400)
Q Consensus        29 ~g~~ii~l~~G~p--~~~-~p~~i~~a~~~al~~~~~~Y~~~~G~~-~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l  104 (400)
                      .|++.+|+..|--  .+. -.|.|.+|+++.+++..  |....+.+ +-...+|+.+....... ..+++++++++++|.
T Consensus        38 dG~~yLD~~sg~~~~~lGh~~p~v~~Ai~~Q~~~~~--~~~~~~~~~~~~~~Lae~l~~~~p~~-~~~~v~f~~SGsEAv  114 (421)
T PRK09792         38 EGNEYIDFAAGIAVLNTGHRHPDLVAAVEQQLQQFT--HTAYQIVPYESYVTLAEKINALAPVS-GQAKTAFFTTGAEAV  114 (421)
T ss_pred             CCCEEEEECCCHHHHHHCCCCHHHHHHHHHHHHHCC--CCCCCCCCCHHHHHHHHHHHHHCCCC-CCCEEEEECCCHHHH
T ss_conf             999998926348851006898999999999997446--75555446569999999999847767-875599857835799


Q ss_pred             CCCCCCCC-CCC-CCCCCCCCCCCCCCC-CCCCCCC-------------CC--CCCCCCCCC-CCCCHHHHHHCCCC---
Q ss_conf             22222223-322-322223333232222-2222222-------------22--222222223-22210333100012---
Q gi|254780602|r  105 FNALMATV-NMG-DEVLIPRPYWVSYPD-MVALCGG-------------IP--VFVDTQQDD-NFQVSPEKLEQAIT---  162 (400)
Q Consensus       105 ~~~~~~~~-~~G-d~Vlv~~P~y~~y~~-~~~~~g~-------------~~--~~v~~~~~~-~~~~d~~~l~~~i~---  162 (400)
                      ..++...- ..| ..|+...-+|-.... .....|.             .+  +++|.+... ...-+.+.+++.+.   
T Consensus       115 E~AiKlAr~~tgr~~ii~~~~sYHG~T~ga~s~tg~~~~~~~~~~p~~~~~~~~p~p~~~~~~~~~~~~d~~~~~~~~~~  194 (421)
T PRK09792        115 ENAVKIARAHTGRPGVIAFSGGFHGRTYMTMALTGKVAPYKIGFGPFPGSVYHVPYPSDLHGISTQDSLDAIERLFKSDI  194 (421)
T ss_pred             HHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHCC
T ss_conf             99999988752998599981785885230354328976433567889997378078842246662336999999976445


Q ss_pred             --CCCCCEEECCC-CCCCCC-CCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC-CCCCCCCCCCCEEEEECCC
Q ss_conf             --21220121135-421000-012333321112233333201110122110000012233-2221112333225741465
Q gi|254780602|r  163 --PKTKWLFLNSP-SNPSGV-VYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFS-NIVNVEPSLYERTLVVNGV  237 (400)
Q Consensus       163 --~~~k~i~l~nP-~NPTG~-v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~-s~~~~~~~~~~~~i~~~S~  237 (400)
                        +++-++++ -| +.-.|. +.+++-+++|.++| ++|++++|.||+...+.=.|.-+. .-..+.|+     |+  .+
T Consensus       195 ~~~~iAAvi~-EPiqg~gG~~~~p~~yl~~lr~lc-~~~gillI~DEV~tGfGRtG~~fa~e~~gv~PD-----ii--~~  265 (421)
T PRK09792        195 EAKQVAAIIF-EPVQGEGGFNVAPKELVAAIRRLC-DEHGIVMIADEVQSGFARTGKLFAMDHYADKPD-----LM--TM  265 (421)
T ss_pred             CCCCEEEEEE-CCCCCCCCCCCCCHHHHHHHHHHH-HHCCCEEEECCCEECCCCCCCCHHHHHHCCCCC-----EE--EE
T ss_conf             6674589996-564577882308989999999999-873967972022106863665226575099986-----87--64


Q ss_pred             CCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCHHHHH----HC
Q ss_conf             44322344544422110122687531001222332222222222223467--6432222221100000002455----30
Q gi|254780602|r  238 SKAYAMTGLRIGYAAGALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGP--QDFVVNNRKIFEYRRDLCVAQL----QG  311 (400)
Q Consensus       238 SK~~~~~G~RiG~~v~~~~li~~l~~~~~~~~~~~~~~~q~a~~~~l~~~--~~~~~~~~~~~~~~r~~~~~~L----~~  311 (400)
                      +|..+ .|+-+|.+++.+++++.........+.+.+.+...++.+.|+--  +..+++.+    +.-+++.+.|    ++
T Consensus       266 gK~l~-gG~P~~av~~~~~v~~~~~~~~~~~Tf~Gnpl~~aaa~a~L~ii~~e~l~~~v~----~~g~~l~~~L~~~~~~  340 (421)
T PRK09792        266 AKSLA-GGMPLSGVVGNANIMDAPAPGGLGGTYAGNPLAVAAAHAVLNIIDKESLCERAN----QLGQRLKNTLIDAKES  340 (421)
T ss_pred             CCCCC-CCCCEEEEEECHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHH----HHHHHHHHHHHHHHHC
T ss_conf             32234-887718999728886467877647879989899999999999998658999999----9999999999999756


Q ss_pred             CCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHH---HHHCCEEEECCCCCCCCCEEEEE--EECCHHHHH
Q ss_conf             4776033027408998626410233211332248989999999---98739799835022899728999--629999999
Q gi|254780602|r  312 VPGIRYMIPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGL---LEIEKVAVVQGSSFGHGPSIRIS--YAVSDAILE  386 (400)
Q Consensus       312 ~~g~~~~~p~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~L---l~~~gV~v~pG~~Fg~~~~iRis--~~~~~e~l~  386 (400)
                      .|.+.-++..| +++=+++.+..        ....+.+++.++   +.+.|+++.+...+  .+.||+.  +..++++++
T Consensus       341 ~p~v~~VRG~G-lm~gvel~d~~--------~~~p~~~~~~~i~~~~~~~Gll~~~~g~~--g~~i~~~PPL~it~~eid  409 (421)
T PRK09792        341 VPAIAAVRGLG-SMIAAEFNDPQ--------TGEPSAAIAQKIQQRALAQGLLLLTCGAY--GNVIRFLYPLTIPDAQFD  409 (421)
T ss_pred             CCCEEEEEECE-EEEEEEECCCC--------CCCCCHHHHHHHHHHHHHCCCEEEECCCC--CCEEEEECCEECCHHHHH
T ss_conf             99889854141-89999975787--------78832999999999999779789944899--898999799238899999


Q ss_pred             HHHHHHHHHHH
Q ss_conf             99999999998
Q gi|254780602|r  387 EACVRIKRFCH  397 (400)
Q Consensus       387 ~al~rl~~~l~  397 (400)
                      +++++|++.|+
T Consensus       410 ~~~~il~~aL~  420 (421)
T PRK09792        410 AAMKILQDALS  420 (421)
T ss_pred             HHHHHHHHHHC
T ss_conf             99999999963


No 237
>PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional
Probab=99.48  E-value=1.1e-13  Score=103.45  Aligned_cols=347  Identities=11%  Similarity=0.051  Sum_probs=176.8

Q ss_pred             CCCCEEECCCCC--CCCC-CCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             699726656589--7498-8999999999998388756998778989999999986421013333223323345433332
Q gi|254780602|r   29 KGIDVLCLTAGE--PDFD-MPENVKYAVVRAMERGETKYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIF  105 (400)
Q Consensus        29 ~g~~ii~l~~G~--p~~~-~p~~i~~a~~~al~~~~~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l~  105 (400)
                      .|+..||+..|-  ..+. -+|.|.+|+++.++.+. .|..+   .+....+|+.+....+  ...+.|.+++++++|..
T Consensus        51 dGn~YiD~~~g~g~~~lGH~hp~V~~Av~~q~~~~~-~~~~~---~~~~~~lAe~L~~~~~--~~~~~V~F~nSGsEA~e  124 (433)
T PRK00615         51 FGKTFIDFCGSWGSLIHGHSHPKICDAIQQGASRGT-SYGLT---SEQEILFATELFSYLG--LEDHKIRFVSSGTEATM  124 (433)
T ss_pred             CCCEEEEHHHHHHHHHHCCCCHHHHHHHHHHHHHCC-CCCCC---CHHHHHHHHHHHHHCC--CCCCEEEEECCHHHHHH
T ss_conf             899877701418863316798899999999996466-56778---8899999999986279--86365997188399999


Q ss_pred             CCCCCC-CCCC-CCCCCCCCCCCCCCCCCC-C---CCCCC----------CCCCCCCCCCCCCHHHHHHCCCC---CCCC
Q ss_conf             222222-3322-322223333232222222-2---22222----------22222222322210333100012---2122
Q gi|254780602|r  106 NALMAT-VNMG-DEVLIPRPYWVSYPDMVA-L---CGGIP----------VFVDTQQDDNFQVSPEKLEQAIT---PKTK  166 (400)
Q Consensus       106 ~~~~~~-~~~G-d~Vlv~~P~y~~y~~~~~-~---~g~~~----------~~v~~~~~~~~~~d~~~l~~~i~---~~~k  166 (400)
                      .+++.- ...| +.|+...-+|-.+..... .   .....          ...|....-.| -|++.+++.+.   +++-
T Consensus       125 ~AiklAR~~TgR~~Ii~~~g~YHG~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-nd~~~~e~~~~~~~~~iA  203 (433)
T PRK00615        125 TAVRLARGITGRSIIIKFLGCYHGHADTLLQGISFDETNLDNLTHLVDTDLPHPLTLSLPY-NDSQIFHEVMEQLGHRVA  203 (433)
T ss_pred             HHHHHHHCCCCCCEEEEEECCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCC-CCHHHHHHHHHHCCCCEE
T ss_conf             9999972264887699996776787200123145787666789877778888785216787-739999999985154303


Q ss_pred             CEEECCC--CCCCCCCCCC-CCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCC
Q ss_conf             0121135--4210000123-333211122333332011101221100000122332221112333225741465443223
Q gi|254780602|r  167 WLFLNSP--SNPSGVVYSQ-NRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAM  243 (400)
Q Consensus       167 ~i~l~nP--~NPTG~v~s~-~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~~  243 (400)
                      +|++ -|  .| .|.+.+. +-+++|-++| +++|+++|.||+-..|.....-......+.|+     |+  +++|..+ 
T Consensus       204 Avi~-EPi~~~-~G~i~p~~~yL~~lr~lc-~~~giLLI~DEV~tGfRtg~~~a~e~~gV~PD-----i~--t~gK~lg-  272 (433)
T PRK00615        204 GVIF-EPICAN-MGVVLPKPGFIEGIIQTC-RRFGSLSIMDEVVTGFRVAFGGAAAIFDVKPD-----IT--VYGKILG-  272 (433)
T ss_pred             EEEE-EEECCC-CCCCCCCHHHHHHHHHHH-HHCCEEEEEECCCCCCEECCCHHHHHHCCCCC-----EE--EECCCCC-
T ss_conf             5787-550246-887689989999999998-76593898513411606254057787399861-----78--7545567-


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHC---CCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCHHHHHHCCCCCEEE
Q ss_conf             4454442211012268753100---1222332222222222223467--6432222221100000002455304776033
Q gi|254780602|r  244 TGLRIGYAAGALSLIKSMIVLQ---GQQTSGACSIAQWAAVEALNGP--QDFVVNNRKIFEYRRDLCVAQLQGVPGIRYM  318 (400)
Q Consensus       244 ~G~RiG~~v~~~~li~~l~~~~---~~~~~~~~~~~q~a~~~~l~~~--~~~~~~~~~~~~~~r~~~~~~L~~~~g~~~~  318 (400)
                      .|+-+|.+++.+++++.+....   ...+.+.+.++..|+.+.|+.-  ++..+++.+.-++-++-+.+.+++. |+.+.
T Consensus       273 gG~Pi~Av~g~~~im~~~~~~g~~~~~gTf~gnpla~AAa~AtL~~l~~~~~~~~~~~~g~~l~~gl~~~~~~~-g~~~~  351 (433)
T PRK00615        273 GGLPAAAVVAHRSIMDHLMPEGTIFQAGTLSGNPLAMAAGKASIELCREEGFYTQLSNLEQLFLSPIEEMIRSQ-GFPVS  351 (433)
T ss_pred             CCCCEEEEEEHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHC-CCCEE
T ss_conf             99870566686999986377898654688740699999999999998357899999999999999999999976-99889


Q ss_pred             E-CCCCEEE-EEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHH
Q ss_conf             0-2740899-8626410233211332248989999999987397998350228997289996299999999999999999
Q gi|254780602|r  319 I-PDGAFYL-YPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGHGPSIRISYAVSDAILEEACVRIKRFC  396 (400)
Q Consensus       319 ~-p~g~~y~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~iRis~~~~~e~l~~al~rl~~~l  396 (400)
                      . -.|++|- +..-....+...........-..|...++ +.||.+.|+..   ..++ +|.+.++++|+..++.+.+.+
T Consensus       352 v~~~gs~~~~~f~~~~~~~~~~~~~~d~~~~~~f~~~~l-~rGV~~~p~~~---~~~f-is~aHt~edi~~t~~a~~~al  426 (433)
T PRK00615        352 LVRYGSMFSFFFRENRPTNLDEAQLSDVEKFQTFYQEAF-SKGVYLSPSPF---EASF-LSSAHSMENLAYAQNVLIDSL  426 (433)
T ss_pred             EEEECCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHH-HCCCCCCCCCC---CCCC-CCCCCCHHHHHHHHHHHHHHH
T ss_conf             975576799996799988999998635999999999999-78978898632---2646-430249999999999999999


Q ss_pred             HHC
Q ss_conf             860
Q gi|254780602|r  397 HSL  399 (400)
Q Consensus       397 ~~l  399 (400)
                      +++
T Consensus       427 ~~~  429 (433)
T PRK00615        427 EKI  429 (433)
T ss_pred             HHH
T ss_conf             999


No 238
>PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=99.48  E-value=8.1e-13  Score=98.12  Aligned_cols=334  Identities=12%  Similarity=0.088  Sum_probs=179.2

Q ss_pred             CCCCEEECCCCC--CCCC-CCHHHHHHHHHHHHCCCC-CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf             699726656589--7498-899999999999838875-699877898999999998642101333322332334543333
Q gi|254780602|r   29 KGIDVLCLTAGE--PDFD-MPENVKYAVVRAMERGET-KYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVI  104 (400)
Q Consensus        29 ~g~~ii~l~~G~--p~~~-~p~~i~~a~~~al~~~~~-~Y~~~~G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l  104 (400)
                      .|+..||+..|-  ..+. -+|.|.+|+++.++...+ .+....  .+....+|+.+.+..+-  .-++|.+++++++|.
T Consensus        40 dG~~ylD~~~g~~~~~lGH~~p~v~~Ai~~q~~~l~~~~~~~~~--~~~~~~lae~L~~~~p~--~~~~v~f~~SGsEAv  115 (423)
T PRK05630         40 DGSTVIDAMSSWWSAIHGHGHPRLKAAAQKQIDTMSHVMFGGLT--HEPAIKLTHKLLNLTGN--PFDHVFYSDSGSVSV  115 (423)
T ss_pred             CCCEEEECCCCHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCC--CHHHHHHHHHHHHHHCC--CCCEEEECCCHHHHH
T ss_conf             98999984436887615369999999999998657673467757--68999999999875447--768899628728999


Q ss_pred             CCCCCCC----C---CCC-CCCCCCCCCCCCCCC-CCCCCC-----------C--CCCCCCCCCC-----CCCCCHHHHH
Q ss_conf             2222222----3---322-322223333232222-222222-----------2--2222222222-----3222103331
Q gi|254780602|r  105 FNALMAT----V---NMG-DEVLIPRPYWVSYPD-MVALCG-----------G--IPVFVDTQQD-----DNFQVSPEKL  157 (400)
Q Consensus       105 ~~~~~~~----~---~~G-d~Vlv~~P~y~~y~~-~~~~~g-----------~--~~~~v~~~~~-----~~~~~d~~~l  157 (400)
                      ..+++..    .   .++ ..|+...-+|-.-.. .....+           .  ..++.|..+-     +...-.++++
T Consensus       116 E~AiKlAr~~~~~~g~~~r~~Ii~~~~~yHG~T~ga~s~t~~~~~~~~~~~~~~~~~~~~p~p~~~~~~~~~~~~~l~~l  195 (423)
T PRK05630        116 EVAIKMALQASKGQGHPERTKLLTWRSGYHGDTFTAMSVCDPENGMHSLWKGTLPEQIFAPAPPVRGSSPQAISEYLDSM  195 (423)
T ss_pred             HHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf             99999999998743898763476555850776664541106766655555788987645689986788878999999999


Q ss_pred             HCCCCCCCCCEEECCC--CCCCCCCC-CCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC-CCCCCCCCCCCEEEE
Q ss_conf             0001221220121135--42100001-2333321112233333201110122110000012233-222111233322574
Q gi|254780602|r  158 EQAITPKTKWLFLNSP--SNPSGVVY-SQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFS-NIVNVEPSLYERTLV  233 (400)
Q Consensus       158 ~~~i~~~~k~i~l~nP--~NPTG~v~-s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~-s~~~~~~~~~~~~i~  233 (400)
                      +..+.++..++++ -|  ++--|... +++.+++|.++| +++++++|.||+...|.=.|.-+. .-..+.|+     |+
T Consensus       196 ~~~~~~~iAAii~-EPi~qg~gG~~~p~~~yl~~lr~lc-~~~gillI~DEV~TGfGRtG~~fa~e~~gV~PD-----iv  268 (423)
T PRK05630        196 ELLIDETVSAIII-EPIVQGAGGMRFHDVALIEGVATLC-KKHDRFLIVDEIATGFGRTGELFATLSNGVQPD-----IM  268 (423)
T ss_pred             HHHCCCCEEEEEE-ECCCCCCCCCCCCCHHHHHHHHHHH-CCCCCEEECCCCEECCCCCCCCHHHHHCCCCCC-----EE
T ss_conf             8743887259999-7467777995679879999999873-306805863643205874565202765699776-----89


Q ss_pred             ECCCCCCCCCCC-CCCCCCCCHHHHHHHHHHHC------CCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCC
Q ss_conf             146544322344-54442211012268753100------1222332222222222223467--64322222211000000
Q gi|254780602|r  234 VNGVSKAYAMTG-LRIGYAAGALSLIKSMIVLQ------GQQTSGACSIAQWAAVEALNGP--QDFVVNNRKIFEYRRDL  304 (400)
Q Consensus       234 ~~S~SK~~~~~G-~RiG~~v~~~~li~~l~~~~------~~~~~~~~~~~q~a~~~~l~~~--~~~~~~~~~~~~~~r~~  304 (400)
                        +++|..+ .| .-+|.+++.+++.+.+..-.      ...+.+.+.+...++.+.|+.-  +++++..    ++.-+.
T Consensus       269 --t~gK~l~-gG~~Pl~av~~~~~i~~~~~~~~~~~~~~hg~T~~GnPl~~Aaa~a~l~~i~~~~l~~~~----~~~g~~  341 (423)
T PRK05630        269 --CVGKALT-GGFMSFAATLCTDKVAQLISTPNGGGALMHGPTFMANPLACAVSHASLEIIETGMWQKQV----KRIEAE  341 (423)
T ss_pred             --EECCHHH-CCCCCEEEEEECHHHHHHHCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHCCHHHHH----HHHHHH
T ss_conf             --8762432-886762799763899975427678876505479997889999999999999847899999----999999


Q ss_pred             HHHHH---HCCCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCCCCEEEEE--EE
Q ss_conf             02455---30477603302740899862641023321133224898999999998739799835022899728999--62
Q gi|254780602|r  305 CVAQL---QGVPGIRYMIPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGHGPSIRIS--YA  379 (400)
Q Consensus       305 ~~~~L---~~~~g~~~~~p~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~iRis--~~  379 (400)
                      +.+.|   ++.+.+.=++..| ...-+++.+.           .+..+....+ .+.|+++.|.     .+.+|+.  +.
T Consensus       342 l~~~L~~L~~~p~V~dVRG~G-lm~~vel~~~-----------~~~~~~~~~~-~~~Gl~~~~~-----g~~l~i~PPL~  403 (423)
T PRK05630        342 LIAGLSPLRHLPGVADVRVLG-AIGVIEMEQN-----------VNVEEATQAA-LDHGVWIRPF-----GRLLYVMPPYI  403 (423)
T ss_pred             HHHHHHHHCCCCCEEEEEECC-EEEEEEECCC-----------CCHHHHHHHH-HHCCCEEEEC-----CCEEEEECCCC
T ss_conf             999999870699678773055-4999995686-----------5699999999-9699479853-----99999938936


Q ss_pred             CCHHHHHHHHHHHHHHHHH
Q ss_conf             9999999999999999986
Q gi|254780602|r  380 VSDAILEEACVRIKRFCHS  398 (400)
Q Consensus       380 ~~~e~l~~al~rl~~~l~~  398 (400)
                      .+++++++++++|++.++.
T Consensus       404 it~eei~~~~~~l~~alkg  422 (423)
T PRK05630        404 TTSEQCAQICTALHAAVKG  422 (423)
T ss_pred             CCHHHHHHHHHHHHHHHCC
T ss_conf             8999999999999999778


No 239
>PRK08117 4-aminobutyrate aminotransferase; Provisional
Probab=99.48  E-value=1.7e-12  Score=96.21  Aligned_cols=345  Identities=13%  Similarity=0.091  Sum_probs=180.3

Q ss_pred             HCCCCEEECCCCCC--CCC-CCHHHHHHHHHHHHCCCCCCCCC-CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf             86997266565897--498-89999999999983887569987-789899999999864210133332233233454333
Q gi|254780602|r   28 SKGIDVLCLTAGEP--DFD-MPENVKYAVVRAMERGETKYTAV-AGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHV  103 (400)
Q Consensus        28 ~~g~~ii~l~~G~p--~~~-~p~~i~~a~~~al~~~~~~Y~~~-~G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~  103 (400)
                      ..|+..||+..|--  .+. -+|.|.+|+++.+++..+  .+. ....+....+|+.+.+....  .-+.+.++++++++
T Consensus        38 ~dG~~yiD~~~g~~~~~lGh~~p~i~~Av~~q~~~~~~--~~~~~~~~~~~~~lae~L~~~~p~--~~~~v~f~~sGsEA  113 (429)
T PRK08117         38 VDGKEYLDFTSGIAVLNVGHNHPKVVQAIKEQADRLVH--GGSGVIYYESILKLAEELAEITPG--GLDMFFFSNSGAEA  113 (429)
T ss_pred             CCCCEEEECCCCHHHHHHCCCCHHHHHHHHHHHHHCCC--CCCCCCCCHHHHHHHHHHHHHCCC--CCCEEEEECCHHHH
T ss_conf             99799999650877534258969999999999863477--677754776999999999984878--87889994874689


Q ss_pred             CCCCCCCC-CCCC-CCCCCCCCCCCCCCCC-CCCCC---------------CCCCCCCCCC------C-CCC-CCHHHHH
Q ss_conf             32222222-3322-3222233332322222-22222---------------2222222222------2-322-2103331
Q gi|254780602|r  104 IFNALMAT-VNMG-DEVLIPRPYWVSYPDM-VALCG---------------GIPVFVDTQQ------D-DNF-QVSPEKL  157 (400)
Q Consensus       104 l~~~~~~~-~~~G-d~Vlv~~P~y~~y~~~-~~~~g---------------~~~~~v~~~~------~-~~~-~~d~~~l  157 (400)
                      ...++... ...| ..|+...-+|-..... ....|               ...+++|...      + ..+ .-+++++
T Consensus       114 ve~AiklAr~~tgr~~ii~~~~~yHG~t~~a~s~t~~~~~~~~~~~~~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~l  193 (429)
T PRK08117        114 IEGALKLAKHVTKRQGIISFTGAFHGRTLGALSVTTSSSKYRKRYQPLLPSVYHAPYPYCFRCPIGRDPESCSLECLRDL  193 (429)
T ss_pred             HHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf             99999999986389859998457788866045531675323457789999836637886325656788056689999999


Q ss_pred             HCCCC-----CCCCCEEECCC-CCCCCCC-CCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCC-CCCCCCCCCC
Q ss_conf             00012-----21220121135-4210000-123333211122333332011101221100000122332-2211123332
Q gi|254780602|r  158 EQAIT-----PKTKWLFLNSP-SNPSGVV-YSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSN-IVNVEPSLYE  229 (400)
Q Consensus       158 ~~~i~-----~~~k~i~l~nP-~NPTG~v-~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s-~~~~~~~~~~  229 (400)
                      ++.+.     ++.-++++ -| +.-.|.+ .+++.++++-++| +++|+++|.||+...+.=.|.-+.. -..+.|+   
T Consensus       194 ~~~~~~~~~~~~iAAvii-EPi~g~gG~~~~~~~fl~~lr~lc-~~~gillI~DEV~tGfGRtG~~fa~~~~gv~PD---  268 (429)
T PRK08117        194 ESLFKRQIAPEEVAAIII-EPVLGEGGYIVPPKEFLQKVREIC-DEHGILLIFDEVQSGFGRTGKWFAAETFGVVPD---  268 (429)
T ss_pred             HHHHHHHCCCCCEEEEEE-ECCCCCCCCEECCHHHHHHHHHHH-HHCCCEEECCCCCCCCCCCCCCCHHHCCCCCCC---
T ss_conf             999986248887899999-646678893738889999999998-763917973431107776677326540498998---


Q ss_pred             EEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCHHH
Q ss_conf             2574146544322344544422110122687531001222332222222222223467--64322222211000000024
Q gi|254780602|r  230 RTLVVNGVSKAYAMTGLRIGYAAGALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGP--QDFVVNNRKIFEYRRDLCVA  307 (400)
Q Consensus       230 ~~i~~~S~SK~~~~~G~RiG~~v~~~~li~~l~~~~~~~~~~~~~~~q~a~~~~l~~~--~~~~~~~~~~~~~~r~~~~~  307 (400)
                        |+  +++|..+ .|+-+|.+++.+++.+.+..-....+.+.+.+...++.+.|+.-  ++.++    ..+++-+.+.+
T Consensus       269 --iv--~~gK~lg-gG~Plsav~~~~~i~~~~~~~~~~~T~~gnp~~~aaa~a~L~~~~~~~l~~----~v~~~g~~l~~  339 (429)
T PRK08117        269 --IM--TVAKGIA-SGFPLSAVVASKELMDQWPLGAHGTTFGGNPVACAAALATLEVIKEEKLLE----NANNMGAYALE  339 (429)
T ss_pred             --EE--EEEECCC-CCCCCCCCCCCHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHH----HHHHHHHHHHH
T ss_conf             --78--8710144-789864221479997066888868589989899999999999997556999----99999999999


Q ss_pred             HHHC----CCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCCCCEEEEE--EECC
Q ss_conf             5530----477603302740899862641023321133224898999999998739799835022899728999--6299
Q gi|254780602|r  308 QLQG----VPGIRYMIPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGHGPSIRIS--YAVS  381 (400)
Q Consensus       308 ~L~~----~~g~~~~~p~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~iRis--~~~~  381 (400)
                      .|++    .|-+.-++..| +++=+++.+...  .+.   .....++...+ .++||++.++..  ..+.+|++  +..+
T Consensus       340 ~L~~l~~~~p~v~~VRG~G-l~~giel~~~~~--~~~---~~~~~~i~~~~-~~~Gll~~~~g~--~~n~i~~~PPL~is  410 (429)
T PRK08117        340 RLEKLKEKYPVIGDVRGIG-LMIGIEFVDETG--EPD---GDAVEKILDKC-LENGLLLYGCGN--DGNVLRFIPPLTVT  410 (429)
T ss_pred             HHHHHHHHCCCEEEEECCC-EEEEEEEECCCC--CCC---HHHHHHHHHHH-HHCCCEEEECCC--CCCEEEEECCCCCC
T ss_conf             9999997199878852266-799999964888--946---99999999999-969958984479--99989997997799


Q ss_pred             HHHHHHHHHHHHHHHHHC
Q ss_conf             999999999999999860
Q gi|254780602|r  382 DAILEEACVRIKRFCHSL  399 (400)
Q Consensus       382 ~e~l~~al~rl~~~l~~l  399 (400)
                      ++++++++++|.+.|...
T Consensus       411 ~~eid~~~~~l~~al~e~  428 (429)
T PRK08117        411 KEEIDQGLSILDKGLGEY  428 (429)
T ss_pred             HHHHHHHHHHHHHHHHHH
T ss_conf             999999999999999976


No 240
>PRK09221 beta alanine--pyruvate transaminase; Provisional
Probab=99.48  E-value=1.7e-12  Score=96.12  Aligned_cols=342  Identities=14%  Similarity=0.117  Sum_probs=178.0

Q ss_pred             CCCCEEECCCCC--CCCC-CCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             699726656589--7498-8999999999998388756998778989999999986421013333223323345433332
Q gi|254780602|r   29 KGIDVLCLTAGE--PDFD-MPENVKYAVVRAMERGETKYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIF  105 (400)
Q Consensus        29 ~g~~ii~l~~G~--p~~~-~p~~i~~a~~~al~~~~~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l~  105 (400)
                      +|++.||+..|-  ..+. -.|.|.+|+++.+++-.+.. ......+.+..+|+.+.....  -.-+.|.+++++++|..
T Consensus        47 dG~~ylD~~sg~~~~~lGh~hp~i~~Ai~~Q~~~l~~~~-~~~~~~~~~~~lae~L~~~~p--~~l~~v~f~~SGsEAvE  123 (445)
T PRK09221         47 DGRKILDGTAGLWCCNAGHGRPEIVEAVARQAATLDYAP-AFQMGHPLAFELAERLAELAP--GGLDHVFFTNSGSESVD  123 (445)
T ss_pred             CCCEEEECCCCHHHCCCCCCCHHHHHHHHHHHHHCCCCC-CCCCCCHHHHHHHHHHHHHCC--CCCCEEEECCCHHHHHH
T ss_conf             989999967268741147897999999999986568724-555688899999999998488--87587996087899999


Q ss_pred             CCCCCCC-------CCCC-CCCCCCCCCCCCCC-CCCCC--------------CCCCCCCCCC-CCCCCCC-------H-
Q ss_conf             2222223-------3223-22223333232222-22222--------------2222222222-2232221-------0-
Q gi|254780602|r  106 NALMATV-------NMGD-EVLIPRPYWVSYPD-MVALC--------------GGIPVFVDTQ-QDDNFQV-------S-  153 (400)
Q Consensus       106 ~~~~~~~-------~~Gd-~Vlv~~P~y~~y~~-~~~~~--------------g~~~~~v~~~-~~~~~~~-------d-  153 (400)
                      .++..-.       .++. .|+...-+|-.-.. .....              |...++.+.. +.+.|..       . 
T Consensus       124 ~AiKlAr~y~~~~g~~~r~~ii~~~~syHG~t~g~~s~~g~~~~~~~f~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  203 (445)
T PRK09221        124 TALKIALAYHRARGQGTRTRLIGRERGYHGVGFGGISVGGIVNNRKMFGGLLPGVDHLPHTLDLPENAFSKGLPEHGAEL  203 (445)
T ss_pred             HHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCHHHHHH
T ss_conf             99999999999719997526962037747997220002688543435678899944716876665433456760678999


Q ss_pred             HHHHHCCCC---C-CCCCEEECCCCC-CCCC-CCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCC-CCCCCCC
Q ss_conf             333100012---2-122012113542-1000-0123333211122333332011101221100000122332-2211123
Q gi|254780602|r  154 PEKLEQAIT---P-KTKWLFLNSPSN-PSGV-VYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSN-IVNVEPS  226 (400)
Q Consensus       154 ~~~l~~~i~---~-~~k~i~l~nP~N-PTG~-v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s-~~~~~~~  226 (400)
                      .+++++.+.   + +.-+++ .-|=. =.|. +.+++-+++|.++| +++++++|.||++..+.=.|.-+.. -..+.|+
T Consensus       204 a~~le~~i~~~~~~~iAavi-iEPiqg~gG~~~~~~~yl~~lr~lc-~~~gillI~DEVqtG~GRtG~~fa~e~~gv~PD  281 (445)
T PRK09221        204 ADELERLVALHDASNIAAVI-VEPMAGSAGVLVPPKGYLQRLREIC-DKHGILLIFDEVITGFGRLGAAFAAERFGVTPD  281 (445)
T ss_pred             HHHHHHHHHHCCCCCEEEEE-ECCCCCCCCCCCCCHHHHHHHHHHH-HHCCEEEEEECCCCCCCCCCCCCEEECCCCCCC
T ss_conf             99999999853987668999-7775577871418889999999998-755848998415317881357612405767998


Q ss_pred             CCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHC-------CCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCC
Q ss_conf             332257414654432234454442211012268753100-------1222332222222222223467--6432222221
Q gi|254780602|r  227 LYERTLVVNGVSKAYAMTGLRIGYAAGALSLIKSMIVLQ-------GQQTSGACSIAQWAAVEALNGP--QDFVVNNRKI  297 (400)
Q Consensus       227 ~~~~~i~~~S~SK~~~~~G~RiG~~v~~~~li~~l~~~~-------~~~~~~~~~~~q~a~~~~l~~~--~~~~~~~~~~  297 (400)
                           |++  ++|.++-.++-+|.+++.+++.+.+..-.       ...+.+.+.+...++.+.|+.-  ++.+++.+  
T Consensus       282 -----iv~--~gKgl~gG~~Plsav~~~~ei~d~~~~~~~~~~~~~hg~T~~gnpla~aaa~a~L~~i~~~~l~~~~~--  352 (445)
T PRK09221        282 -----LIT--FAKGLTNGAIPMGAVIASDEIYDAFMQGPEYAIEFFHGYTYSGHPVACAAGLATLDIYREEDLFERAA--  352 (445)
T ss_pred             -----EEE--ECCCCCCCCCCEEEEEECHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHH--
T ss_conf             -----677--63435678775489996578999760387555323346678889899999999999998646999999--


Q ss_pred             CCCCCCCHHHH---HHCCCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCCCCEE
Q ss_conf             10000000245---530477603302740899862641023321133224898999999998739799835022899728
Q gi|254780602|r  298 FEYRRDLCVAQ---LQGVPGIRYMIPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGHGPSI  374 (400)
Q Consensus       298 ~~~~r~~~~~~---L~~~~g~~~~~p~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~i  374 (400)
                        +.-+++.+.   |++.+.+.=++.. |+.+=+++.....      .......+++..++ +.|+++.++     .+.+
T Consensus       353 --~~g~~l~~~L~~L~~~~~v~dVRG~-Glm~giel~~~~~------~~~~~~~~~~~~~~-~~Gll~~~~-----g~~l  417 (445)
T PRK09221        353 --ELAPYFEDAVHSLKGLPHVIDIRNY-GLVAGIELAPRPG------APGKRGYEAFMKCF-EKGLLVRYT-----GDTI  417 (445)
T ss_pred             --HHHHHHHHHHHHHHCCCCEEEEECC-CEEEEEEEECCCC------CHHHHHHHHHHHHH-HCCEEEEEC-----CCEE
T ss_conf             --9999999999986269975987504-0899999857888------55578999999999-699289637-----9979


Q ss_pred             EEE--EECCHHHHHHHHHHHHHHHHHC
Q ss_conf             999--6299999999999999999860
Q gi|254780602|r  375 RIS--YAVSDAILEEACVRIKRFCHSL  399 (400)
Q Consensus       375 Ris--~~~~~e~l~~al~rl~~~l~~l  399 (400)
                      |++  +..+++++++++++|++.|+++
T Consensus       418 rl~PPL~it~~eid~~~~~l~~al~~v  444 (445)
T PRK09221        418 ALSPPLIIEKAQIDELVDALGDALRAV  444 (445)
T ss_pred             EEECCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             998993489999999999999999986


No 241
>PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=99.46  E-value=2.1e-12  Score=95.57  Aligned_cols=335  Identities=13%  Similarity=0.115  Sum_probs=178.6

Q ss_pred             HCCCCEEECCCCC--CCCC-CCHHHHHHHHHHHHCCCC-CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf             8699726656589--7498-899999999999838875-69987789899999999864210133332233233454333
Q gi|254780602|r   28 SKGIDVLCLTAGE--PDFD-MPENVKYAVVRAMERGET-KYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHV  103 (400)
Q Consensus        28 ~~g~~ii~l~~G~--p~~~-~p~~i~~a~~~al~~~~~-~Y~~~~G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~  103 (400)
                      ..|+..||+..|-  ..+. -.|.|.+|+++.+++..+ .|.... . +-...+|+.+.+...  ..-+.|.+++++++|
T Consensus        41 ~dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~ql~~l~~~~~~~~~-~-~~~~~lae~L~~~~p--~~l~~v~f~~SGsEA  116 (429)
T PRK06173         41 KDGRRLIDGMSSWWAALHGYNHPRLNAAATNQLSKMSHIMFGGFT-H-EPAVELAQLLLEILP--PELNKIFFADSGSVA  116 (429)
T ss_pred             CCCCEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCC-C-HHHHHHHHHHHHHCC--CCCCEEEECCCHHHH
T ss_conf             999999985632885323799899999999999757785567757-7-799999999998479--775879971865999


Q ss_pred             CCCCCCCC-------CCCC-CCCCCCCCCCCCCCC-CCCCC----C-------CCCC--CCCCCC---CCCCC-CHHHHH
Q ss_conf             32222222-------3322-322223333232222-22222----2-------2222--222222---23222-103331
Q gi|254780602|r  104 IFNALMAT-------VNMG-DEVLIPRPYWVSYPD-MVALC----G-------GIPV--FVDTQQ---DDNFQ-VSPEKL  157 (400)
Q Consensus       104 l~~~~~~~-------~~~G-d~Vlv~~P~y~~y~~-~~~~~----g-------~~~~--~v~~~~---~~~~~-~d~~~l  157 (400)
                      ...+++..       ..+| ..|+...-+|-.-.. .....    |       ..+.  .+|...   ...|. -+++.+
T Consensus       117 vE~AiKlA~~y~~~~g~~~r~~ii~~~~~yHG~T~~a~s~~~~~~~~~~~~~~~~p~~~~~p~~~~~~~~~~~~~~~~~l  196 (429)
T PRK06173        117 VEVAMKMALQYQQAKGEVQRTKFATIRSGYHGDTWHAMSVCDPVTGMHGLFNSSLPVQYFLPQPSVKFGEAWRDEAIEPL  196 (429)
T ss_pred             HHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf             99999999999997289876526750588588757677605764466666678898653468998765654227799999


Q ss_pred             HCCCCC---CCCCEEECCC--CCCCCCC-CCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC-CCCCCCCCCCCE
Q ss_conf             000122---1220121135--4210000-12333321112233333201110122110000012233-222111233322
Q gi|254780602|r  158 EQAITP---KTKWLFLNSP--SNPSGVV-YSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFS-NIVNVEPSLYER  230 (400)
Q Consensus       158 ~~~i~~---~~k~i~l~nP--~NPTG~v-~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~-s~~~~~~~~~~~  230 (400)
                      ++.+..   ++-++++ -|  ++-.|.+ .+++-++++.++| +++|+++|.||+...|.=.|.-+. .-..+.|+    
T Consensus       197 ~~~~~~~~~~iAavi~-EPi~qg~gG~~~~~~~yl~~lr~lc-~~~gillI~DEV~tGfGRtG~~fa~e~~gv~PD----  270 (429)
T PRK06173        197 QDLLEQHGDEIAALIL-EPVVQGAGGMYFYSPTYLVKARELC-DQYGVLLIFDEIATGFGRTGKLFALEHAGVVPD----  270 (429)
T ss_pred             HHHHHHCCCCEEEEEE-EECCCCCCCCCCCCHHHHHHHHHHH-HHCCCEEEEECCCCCCCCCCCCCHHHCCCCCCC----
T ss_conf             9999855886369999-8644678986678999999999875-124855773013206873668445323689997----


Q ss_pred             EEEECCCCCCCCCCC-CCCCCCCCHHHHHHHHHHHC-----CCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCC
Q ss_conf             574146544322344-54442211012268753100-----1222332222222222223467--643222222110000
Q gi|254780602|r  231 TLVVNGVSKAYAMTG-LRIGYAAGALSLIKSMIVLQ-----GQQTSGACSIAQWAAVEALNGP--QDFVVNNRKIFEYRR  302 (400)
Q Consensus       231 ~i~~~S~SK~~~~~G-~RiG~~v~~~~li~~l~~~~-----~~~~~~~~~~~q~a~~~~l~~~--~~~~~~~~~~~~~~r  302 (400)
                       |++  ++|..+ .| .-+|.+++.+++.+.+..-.     ...+.+.+++...++.+.|+.-  ++++++.++.    -
T Consensus       271 -ivt--~gKglg-gG~~P~~avi~~~~i~~~~~~g~~~~f~hg~T~~Gnpla~Aaa~a~L~~i~~~~l~~~~~~~----g  342 (429)
T PRK06173        271 -IMC--IGKALT-GGYLTLSATITTEEIAQTICSGEAKCFMHGPTFMANPLACAIAAESIRLLLESPWQQNIQRI----E  342 (429)
T ss_pred             -EEE--ECCCCC-CCCCCEEEEEECHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHH----H
T ss_conf             -898--554456-88776178987689996424687666352789986899999999999999864699999999----9


Q ss_pred             CCHHHHH---HCCCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCCCCEEEEE--
Q ss_conf             0002455---30477603302740899862641023321133224898999999998739799835022899728999--
Q gi|254780602|r  303 DLCVAQL---QGVPGIRYMIPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGHGPSIRIS--  377 (400)
Q Consensus       303 ~~~~~~L---~~~~g~~~~~p~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~iRis--  377 (400)
                      +++.+.|   ++.+.+.=++..| ++.-+++...           .+...+..+++ +.||++.|.     .+.+|++  
T Consensus       343 ~~l~~~L~~~~~~~~v~dVRG~G-l~~~iel~~~-----------~~~~~l~~~~~-~~Gll~~~~-----g~~l~l~PP  404 (429)
T PRK06173        343 RQLRQELSPAAEFDYVAEVRVLG-AIGVVEMKSP-----------VDMATLQPRFV-EHGIWVRPF-----GKLVYLMPP  404 (429)
T ss_pred             HHHHHHHHHHCCCCCEEEECCCC-EEEEEEECCC-----------CCHHHHHHHHH-HCCCEEEEC-----CCEEEEECC
T ss_conf             99999999631699668742357-2999994684-----------56999999999-699589834-----998999589


Q ss_pred             EECCHHHHHHHHHHHHHHHHH
Q ss_conf             629999999999999999986
Q gi|254780602|r  378 YAVSDAILEEACVRIKRFCHS  398 (400)
Q Consensus       378 ~~~~~e~l~~al~rl~~~l~~  398 (400)
                      +..+++++++++++|.+.|+.
T Consensus       405 L~it~~ei~~~~~~l~~aL~e  425 (429)
T PRK06173        405 FIISQDELTQLTSGLLRVLTQ  425 (429)
T ss_pred             CCCCHHHHHHHHHHHHHHHHH
T ss_conf             368999999999999999999


No 242
>PRK06058 4-aminobutyrate aminotransferase; Provisional
Probab=99.46  E-value=3.3e-12  Score=94.42  Aligned_cols=345  Identities=17%  Similarity=0.160  Sum_probs=171.4

Q ss_pred             CCCEEECCCCC--CCCC-CCHHHHHHHHHHHHCCCCC-CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             99726656589--7498-8999999999998388756-998778989999999986421013333223323345433332
Q gi|254780602|r   30 GIDVLCLTAGE--PDFD-MPENVKYAVVRAMERGETK-YTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIF  105 (400)
Q Consensus        30 g~~ii~l~~G~--p~~~-~p~~i~~a~~~al~~~~~~-Y~~~~G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l~  105 (400)
                      |+..||+..|.  ..+. -+|.|.+|+++.+++..+. +.... . +-..++|+.+.+....+ ..+.+++++++++|..
T Consensus        55 G~~ylD~~sg~~~~~lGh~~p~v~~Ai~~Q~~~l~h~~~~~~~-~-~~~~~lae~L~~~~p~~-~~~~~~~~~SGSEAvE  131 (446)
T PRK06058         55 GNRLIDLGSGIAVTTVGNSAPAVVDAVRAQVARFTHTCFMVTP-Y-EGYVAVAEQLNRLTPGD-HEKRSALFNSGAEAVE  131 (446)
T ss_pred             CCEEEEECCCHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCC-C-HHHHHHHHHHHHHCCCC-CCCEEEECCCCHHHHH
T ss_conf             6988780334775121789899999999999743572246665-4-78999999999857876-6626772488668999


Q ss_pred             CCCCCC-CCC-CCCCCCCCCCCCCCCCC-CCCCCC-------------CCCCCC----CC-CCCCCCC----------HH
Q ss_conf             222222-332-23222233332322222-222222-------------222222----22-2232221----------03
Q gi|254780602|r  106 NALMAT-VNM-GDEVLIPRPYWVSYPDM-VALCGG-------------IPVFVD----TQ-QDDNFQV----------SP  154 (400)
Q Consensus       106 ~~~~~~-~~~-Gd~Vlv~~P~y~~y~~~-~~~~g~-------------~~~~v~----~~-~~~~~~~----------d~  154 (400)
                      .+++.. ... ...|+...-+|-..... ....+.             .++.+|    .. ......+          ..
T Consensus       132 ~AiKlAR~~tgr~~iis~~~~YHG~t~~~~~~t~~~~~~~~~~~p~~p~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (446)
T PRK06058        132 NAVKIARSYTGKPAVVAFDHAYHGRTNLTMALTAKSMPYKSGFGPFAPEVYRAPLSYPYRDGLLDKELATDGEEAAARAI  211 (446)
T ss_pred             HHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf             99999997569987999769868898730211278866434678899984566888776663335562223899999999


Q ss_pred             HHHHCCCC-CCCCCEEECCC-CCCCCCCC-CCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC-CCCCCCCCCCCE
Q ss_conf             33100012-21220121135-42100001-2333321112233333201110122110000012233-222111233322
Q gi|254780602|r  155 EKLEQAIT-PKTKWLFLNSP-SNPSGVVY-SQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFS-NIVNVEPSLYER  230 (400)
Q Consensus       155 ~~l~~~i~-~~~k~i~l~nP-~NPTG~v~-s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~-s~~~~~~~~~~~  230 (400)
                      +.+++.+. +++-+|++ -| +.-.|.+. +++-+++|-++| +++|+++|.||+...|.=.|.-+. .-..+.|+    
T Consensus       212 ~~l~~~~~~~~iAavi~-EPiqg~gG~~~p~~~yl~~lr~lc-~~~gillI~DEV~TGfGRtG~~fa~e~~gv~PD----  285 (446)
T PRK06058        212 TVIDKQIGADNLAAVII-EPIQGEGGFIVPAEGFLPALLDWC-RENGVVFIADEVQTGFARTGAMFACEHEGIVPD----  285 (446)
T ss_pred             HHHHHHCCCCCEEEEEE-CCCCCCCCCCCCCHHHHHHHHHHH-HHCCCEEECCCCEECCCCCCCCHHHHHCCCCCC----
T ss_conf             99997438997799997-277688898679889999999999-874925870431206775566045653588998----


Q ss_pred             EEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCHHHH
Q ss_conf             574146544322344544422110122687531001222332222222222223467--643222222110000000245
Q gi|254780602|r  231 TLVVNGVSKAYAMTGLRIGYAAGALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGP--QDFVVNNRKIFEYRRDLCVAQ  308 (400)
Q Consensus       231 ~i~~~S~SK~~~~~G~RiG~~v~~~~li~~l~~~~~~~~~~~~~~~q~a~~~~l~~~--~~~~~~~~~~~~~~r~~~~~~  308 (400)
                       |+  +++|.++ .|+-+|.+++.+++++.........+.+.+.+...++.+.|+.-  ++.+++    .++.-+++.+.
T Consensus       286 -iv--t~gKgl~-gG~Plsav~~~~ei~~~~~~~~~g~T~~Gnpla~aaala~L~~i~~e~l~~~----v~~~g~~l~~~  357 (446)
T PRK06058        286 -LI--TTAKGIA-GGLPLSAVTGRAEIMDAPHVGGLGGTYGGNPVACAAALAAIETIESDDLVAR----ARQIERLVTDR  357 (446)
T ss_pred             -EE--EECHHCC-CCCCCCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHH----HHHHHHHHHHH
T ss_conf             -54--4221013-7888510004698860676787677889898999999999999986569999----99998999999


Q ss_pred             HHC----CCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCCCCEEEEE--EECCH
Q ss_conf             530----477603302740899862641023321133224898999999998739799835022899728999--62999
Q gi|254780602|r  309 LQG----VPGIRYMIPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGHGPSIRIS--YAVSD  382 (400)
Q Consensus       309 L~~----~~g~~~~~p~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~iRis--~~~~~  382 (400)
                      |++    .+-+.-++..|-|.. +++-+... ..+.   .....+++..+ .+.|+++.++..+  .+-||+.  +..++
T Consensus       358 L~~l~~~~~~i~dvRG~GLm~g-ielv~~~~-~~~~---~~~~~~v~~~~-~~~Gll~~~~g~~--g~~lrl~PPL~it~  429 (446)
T PRK06058        358 LGALQAEDDRIGDVRGRGAMIA-IELVKSGT-TEPD---AELTKALAAAA-HAAGVIVLTCGTY--GNVIRLLPPLVISD  429 (446)
T ss_pred             HHHHHHHCCCEEEEEECCEEEE-EEEEECCC-CCCC---HHHHHHHHHHH-HHCCCEEECCCCC--CCEEEEECCEECCH
T ss_conf             9999860997887764546999-99930888-8959---89999999999-9789889625889--99899979945789


Q ss_pred             HHHHHHHHHHHHHHHHC
Q ss_conf             99999999999999860
Q gi|254780602|r  383 AILEEACVRIKRFCHSL  399 (400)
Q Consensus       383 e~l~~al~rl~~~l~~l  399 (400)
                      +++++++++|.+.++.+
T Consensus       430 ~eid~~l~il~~al~ev  446 (446)
T PRK06058        430 ELLSEGLDVLEAALADL  446 (446)
T ss_pred             HHHHHHHHHHHHHHHHC
T ss_conf             99999999999999749


No 243
>PRK06082 4-aminobutyrate aminotransferase; Provisional
Probab=99.46  E-value=1.8e-12  Score=96.06  Aligned_cols=344  Identities=15%  Similarity=0.111  Sum_probs=173.7

Q ss_pred             HCCCCEEECCCCCC-CCC-CCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             86997266565897-498-8999999999998388756998778989999999986421013333223323345433332
Q gi|254780602|r   28 SKGIDVLCLTAGEP-DFD-MPENVKYAVVRAMERGETKYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIF  105 (400)
Q Consensus        28 ~~g~~ii~l~~G~p-~~~-~p~~i~~a~~~al~~~~~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l~  105 (400)
                      .+|+..+|++-+.. .+. -.|.|.+|+++.+++-  .|.+..-.-+....+|+.+....+.  +-+.|+++++++++..
T Consensus        70 ~dG~~YLD~~G~~v~~lGh~hp~v~~Ai~~Q~~~l--~~~~~~~~~~~~~~lA~~L~~~~p~--~l~~v~f~~SGSEAvE  145 (460)
T PRK06082         70 ASGKKYMDFHGNNVHQLGYGHPHVIKKVTEQIAKL--PFSPRRFTNETAIECAEKLTEICGG--ELNRVLFAPGGTSVIG  145 (460)
T ss_pred             CCCCEEEEECCHHHCCCCCCCHHHHHHHHHHHHHC--CCCCCCCCCHHHHHHHHHHHHHCCC--CCCEEEECCCHHHHHH
T ss_conf             98899998347876856779999999999999758--8876552688999999999985787--7697984396589999


Q ss_pred             CCCCCC-CCCC-CCCCCCCCCCCCCCCCC-CC--------------CCCCCCCCCCCCCCCCC-C---H---HHHHHCCC
Q ss_conf             222222-3322-32222333323222222-22--------------22222222222223222-1---0---33310001
Q gi|254780602|r  106 NALMAT-VNMG-DEVLIPRPYWVSYPDMV-AL--------------CGGIPVFVDTQQDDNFQ-V---S---PEKLEQAI  161 (400)
Q Consensus       106 ~~~~~~-~~~G-d~Vlv~~P~y~~y~~~~-~~--------------~g~~~~~v~~~~~~~~~-~---d---~~~l~~~i  161 (400)
                      .++..- .-.| .+|+...-+|-.-...+ ..              .|...++.|....+.|. .   |   .+.++..+
T Consensus       146 ~AiKlAr~~tgr~kiIs~~~syHG~T~~als~~g~~~~r~~~~pl~~g~~~vp~p~~~~~~~~~~~~~~~~~~~~le~~i  225 (460)
T PRK06082        146 MALKLARHITGNYKVVSLWDSFHGASLDAISVGGEACFRQGMGPLMAGVERIPPAVSYRGAFPRADGSDVHYADYLEYVI  225 (460)
T ss_pred             HHHHHHHHHHCCCEEEEECCCCCCCCHHHHHCCCCHHHCCCCCCCCCCCEECCCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf             99999988528864899607867762666550495433368889899975479863236666764311289999999986


Q ss_pred             C-CC-CCCEEECCC-CCCCCC-CCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC-CCCCCCCCCCCEEEEECC
Q ss_conf             2-21-220121135-421000-012333321112233333201110122110000012233-222111233322574146
Q gi|254780602|r  162 T-PK-TKWLFLNSP-SNPSGV-VYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFS-NIVNVEPSLYERTLVVNG  236 (400)
Q Consensus       162 ~-~~-~k~i~l~nP-~NPTG~-v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~-s~~~~~~~~~~~~i~~~S  236 (400)
                      . ++ +.++ +.-| .+ +|. +.+++-+++|-++| +++|+++|.||+...+.=.|.-+. .-..+.|+     |+  +
T Consensus       226 e~~g~iAA~-i~EPi~~-~g~~~P~~~yl~~lr~lc-~~~giLlI~DEVqtGfGRTG~~fa~e~~gv~PD-----Iv--~  295 (460)
T PRK06082        226 EKEGGIGAF-IAEAVRN-TDVQVPSKAYWKRIREIC-DKHNVLLIIDDIPNGMGRSGEWFTHQAFDIEPD-----IL--C  295 (460)
T ss_pred             HCCCCEEEE-EECCCCC-CCCCCCCHHHHHHHHHHH-HHCCCEEECCCCCCCCCCCCCHHHHHCCCCCCC-----EE--E
T ss_conf             057978999-9616667-888068989999999999-972985760332028875443446631799982-----89--9


Q ss_pred             CCCCCCCCCC-CCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCHHHHHHC--
Q ss_conf             5443223445-44422110122687531001222332222222222223467--643222222110000000245530--
Q gi|254780602|r  237 VSKAYAMTGL-RIGYAAGALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGP--QDFVVNNRKIFEYRRDLCVAQLQG--  311 (400)
Q Consensus       237 ~SK~~~~~G~-RiG~~v~~~~li~~l~~~~~~~~~~~~~~~q~a~~~~l~~~--~~~~~~~~~~~~~~r~~~~~~L~~--  311 (400)
                      ++|.++ .|+ -+|.+++.+++.........+.+.+.+.+...++.+.|+--  ++.+++    .++.-+++.+.|++  
T Consensus       296 ~gKglg-gG~~Pisav~~~~~~~~~~~~~~g~~T~~gnPl~cAaAlA~L~iie~e~l~~~----a~~~G~~l~~~L~~L~  370 (460)
T PRK06082        296 IGKGLG-GGLVPIAAMITKDKYNTAAQISLGHYTHEKSPIGCAAALATMEAIEQEGLLDK----VKADSQFMREKLLEMK  370 (460)
T ss_pred             ECHHHH-CCCCCEEEEEEHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHH----HHHHHHHHHHHHHHHH
T ss_conf             881643-89776389987488552015776543678987999999999999972578899----9999999999999998


Q ss_pred             --CCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCCCCEEEEE--EECCHHHHHH
Q ss_conf             --477603302740899862641023321133224898999999998739799835022899728999--6299999999
Q gi|254780602|r  312 --VPGIRYMIPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGHGPSIRIS--YAVSDAILEE  387 (400)
Q Consensus       312 --~~g~~~~~p~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~iRis--~~~~~e~l~~  387 (400)
                        .|.+.-++..| +++=+++..-......   .......+..++ .+.|+.+.+.    ..+-||++  +..+++++++
T Consensus       371 ~~~p~VgdVRG~G-Lm~giElv~d~~tk~~---~~~~a~~v~~~~-~~~Gl~~~~~----~gnvirl~PPL~It~~eid~  441 (460)
T PRK06082        371 AKYPVIGDVRGIG-LLWGIELVTDHETKTR---AYDEAEAVLYQC-LNNGLSFKVS----QGNVIQLSPPLIISREQLTE  441 (460)
T ss_pred             HCCCCEEEECCCC-EEEEEEEECCCCCCCC---CHHHHHHHHHHH-HHCCCEEECC----CCCEEEEECCCCCCHHHHHH
T ss_conf             6299788523365-4999997417765656---679999999999-9689179108----99989997991189999999


Q ss_pred             HHHHHHHHHHHC
Q ss_conf             999999999860
Q gi|254780602|r  388 ACVRIKRFCHSL  399 (400)
Q Consensus       388 al~rl~~~l~~l  399 (400)
                      ++++|++.++++
T Consensus       442 ~l~~l~~al~ev  453 (460)
T PRK06082        442 ALAIFEEAIAKV  453 (460)
T ss_pred             HHHHHHHHHHHH
T ss_conf             999999999999


No 244
>PRK07495 4-aminobutyrate aminotransferase; Provisional
Probab=99.46  E-value=2.6e-12  Score=95.07  Aligned_cols=349  Identities=15%  Similarity=0.108  Sum_probs=177.8

Q ss_pred             CCCCEEECCCCCC--CCC-CCHHHHHHHHHHHHCCCC-CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf             6997266565897--498-899999999999838875-699877898999999998642101333322332334543333
Q gi|254780602|r   29 KGIDVLCLTAGEP--DFD-MPENVKYAVVRAMERGET-KYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVI  104 (400)
Q Consensus        29 ~g~~ii~l~~G~p--~~~-~p~~i~~a~~~al~~~~~-~Y~~~~G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l  104 (400)
                      .|+..+|+..|--  .+. -+|.|.+|+++.++...+ .+....  .+-...+|+.+.+...-+. .+.+++++++++|.
T Consensus        36 dG~~ylD~~sg~~~~~lGh~~p~i~~Ai~~ql~~l~~~~~~~~~--~~~~~~lae~L~~~~p~~~-~~~~~F~~SGsEAv  112 (422)
T PRK07495         36 EGRRYIDFAAGIAVVNTGHRHPKVIAAVKAQLDRFTHTCHQVVP--YENYVRLAERLNALVPGDF-EKKTIFVTTGAEAV  112 (422)
T ss_pred             CCCEEEEECCCHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCC--CHHHHHHHHHHHHHCCCCC-CCEEEEECCCCHHH
T ss_conf             88999992608897634579799999999998546675566546--5799999999997568774-54799727862599


Q ss_pred             CCCCCCC-CCCC-CCCCCCCCCCCCCCC-CCCCCCC-------------CCCCCCCCC-CCCCCC--HHHHHHCCCC---
Q ss_conf             2222222-3322-322223333232222-2222222-------------222222222-232221--0333100012---
Q gi|254780602|r  105 FNALMAT-VNMG-DEVLIPRPYWVSYPD-MVALCGG-------------IPVFVDTQQ-DDNFQV--SPEKLEQAIT---  162 (400)
Q Consensus       105 ~~~~~~~-~~~G-d~Vlv~~P~y~~y~~-~~~~~g~-------------~~~~v~~~~-~~~~~~--d~~~l~~~i~---  162 (400)
                      ..++..- ...| ..|+...-+|-.-.. .....|.             .++.+|... ..+...  ..+.+++.+.   
T Consensus       113 E~AiKlAr~~tgr~~iis~~~~yHG~T~~a~s~tg~~~~~~~~~~~~~~~~~~~p~p~~~~~~~~~~~~~~l~~~~~~~~  192 (422)
T PRK07495        113 ENAVKIARAATGRSAVIAFGGGFHGRTFMGMALTGKVVPYKVGFGAMPPDVFHVPFPVELHGVSVDQSLAALDKLFKADV  192 (422)
T ss_pred             HHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf             99999756527998799987887786421243138876543567889999367078832357766779999999987516


Q ss_pred             --CCCCCEEECCC-CCCCCCC-CCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC-CCCCCCCCCCCEEEEECCC
Q ss_conf             --21220121135-4210000-12333321112233333201110122110000012233-2221112333225741465
Q gi|254780602|r  163 --PKTKWLFLNSP-SNPSGVV-YSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFS-NIVNVEPSLYERTLVVNGV  237 (400)
Q Consensus       163 --~~~k~i~l~nP-~NPTG~v-~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~-s~~~~~~~~~~~~i~~~S~  237 (400)
                        .++-++++ -| +.-.|.+ .+++.++++-++| +++|+++|.||+...|.=.|.-+. .-..+.|+     |+  ++
T Consensus       193 ~~~~iAAvIv-EPiqg~gG~~~~~~~yl~~lr~lc-~~~gillI~DEV~TGfGRtG~~fa~e~~gv~PD-----iv--~~  263 (422)
T PRK07495        193 DPQRVAAIII-EPVQGEGGFYPAPAAFMKALRELC-DQHGILLIADEVQTGFARTGKLFAMEHHEVAAD-----LT--TM  263 (422)
T ss_pred             CCCCEEEEEE-CCCCCCCCCEECCHHHHHHHHHHH-HHCCCEEECCCCCCCCCCCCCCHHHHCCCCCCC-----EE--EE
T ss_conf             8775789996-676478886638889999999999-873966877630108876655026544899980-----99--96


Q ss_pred             CCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCC----C
Q ss_conf             443223445444221101226875310012223322222222222234676432222221100000002455304----7
Q gi|254780602|r  238 SKAYAMTGLRIGYAAGALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQGV----P  313 (400)
Q Consensus       238 SK~~~~~G~RiG~~v~~~~li~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~~~~~L~~~----~  313 (400)
                      +|..+ .|+-+|.+++.+++.+.........+.+.+.+...++++.|+--++  ++..+..++.-+++.+.|+++    |
T Consensus       264 gKgl~-gG~Pl~av~~~~~i~~~~~~~~~~~Tf~Gnpla~aaa~a~L~i~~~--~~l~~~~~~~g~~l~~~L~~l~~~~p  340 (422)
T PRK07495        264 AKSLA-GGFPLAAVTGRAEIMDAPGPGGLGGTYGGNPLGIAAAHAVLDVIEE--EDLCERANQLGNRLKQRLASIRETVP  340 (422)
T ss_pred             CHHHH-CCCCCEEEEECHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             41542-8875168887399883558888666799898999999999999986--48999999999999999999985499


Q ss_pred             CCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCCCCEEEEE--EECCHHHHHHHHHH
Q ss_conf             7603302740899862641023321133224898999999998739799835022899728999--62999999999999
Q gi|254780602|r  314 GIRYMIPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGHGPSIRIS--YAVSDAILEEACVR  391 (400)
Q Consensus       314 g~~~~~p~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~iRis--~~~~~e~l~~al~r  391 (400)
                      .+.=++.. |+++=+++.+.... .+..   .-...+...+ .+.|+++.++...  ++-|||.  +..+++++++++++
T Consensus       341 ~v~dvRG~-GLm~giel~~~~~~-~p~~---~~~~~v~~~~-~~~Gll~~~~g~~--~nvi~~~PPL~it~~eid~~~~~  412 (422)
T PRK07495        341 EIADIRGP-GFMNAVEFNDADTG-LPSA---EFANRVRLEA-LEKGLILLTCGVH--GNVIRFLAPITIQDEVFGEALDI  412 (422)
T ss_pred             CEEEEEEC-CEEEEEEEECCCCC-CCCH---HHHHHHHHHH-HHCCCEEEECCCC--CCEEEEECCCCCCHHHHHHHHHH
T ss_conf             88988624-56999998338888-9788---9999999999-9779889834889--99899979902579999999999


Q ss_pred             HHHHHHHCC
Q ss_conf             999998609
Q gi|254780602|r  392 IKRFCHSLQ  400 (400)
Q Consensus       392 l~~~l~~l~  400 (400)
                      |.+.|...|
T Consensus       413 l~~aL~E~~  421 (422)
T PRK07495        413 LEASILEAR  421 (422)
T ss_pred             HHHHHHHHC
T ss_conf             999999960


No 245
>TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase; InterPro: IPR004639   Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway . The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin .   The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA.   The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III.   Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) .   This entry represents glutamate-1-semialdehyde (GSA) aminotransferase (5.4.3.8 from EC), which catalyse a transamination reaction to produce 5-aminoaevulinic acid during the first stage of tetrapyrrole biosynthesis by the C5 pathway , . This enzyme has a high degree of similarity to amino acid transaminases, and is classed as a class III aminotransferase.; GO: 0042286 glutamate-1-semialdehyde 21-aminomutase activity, 0033014 tetrapyrrole biosynthetic process.
Probab=99.45  E-value=1.5e-13  Score=102.67  Aligned_cols=345  Identities=18%  Similarity=0.206  Sum_probs=200.0

Q ss_pred             HCCCCEEECCC--CCCCCC-CCHHHHHHHHHHHHCCCCCCCC-CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf             86997266565--897498-8999999999998388756998-7789899999999864210133332233233454333
Q gi|254780602|r   28 SKGIDVLCLTA--GEPDFD-MPENVKYAVVRAMERGETKYTA-VAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHV  103 (400)
Q Consensus        28 ~~g~~ii~l~~--G~p~~~-~p~~i~~a~~~al~~~~~~Y~~-~~G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~  103 (400)
                      ..|+..||+-.  |=.=+. .+|.|++|++++++.|. .|+. +...-+|=+.|-+++..     .+.|-|=+.|.++||
T Consensus        45 vDG~~YIDyv~swGPLILGHahp~v~~Av~e~lerG~-syG~PtE~Ei~lA~~i~~~v~~-----~t~e~vRfVnSGTEA  118 (434)
T TIGR00713        45 VDGNEYIDYVLSWGPLILGHAHPKVVEAVKEALERGT-SYGAPTEAEILLAKEIISRVPS-----VTEEMVRFVNSGTEA  118 (434)
T ss_pred             CCCCEEEHHHHHCCCCCCCCCCHHHHHHHHHHHHHCC-CCCCCCHHHHHHHHHHHHHCCC-----CCCCEEEEECCCCHH
T ss_conf             3888001211000020117897689999999997301-2689988999999999864055-----546516862176488


Q ss_pred             CCCCC---CCCCCCCCCCCCCCCCCCCCCCCC-CC--CCCCCC---CCCCCCC-------CCCC---CHHHHHHCCCCC-
Q ss_conf             32222---222332232222333323222222-22--222222---2222222-------3222---103331000122-
Q gi|254780602|r  104 IFNAL---MATVNMGDEVLIPRPYWVSYPDMV-AL--CGGIPV---FVDTQQD-------DNFQ---VSPEKLEQAITP-  163 (400)
Q Consensus       104 l~~~~---~~~~~~Gd~Vlv~~P~y~~y~~~~-~~--~g~~~~---~v~~~~~-------~~~~---~d~~~l~~~i~~-  163 (400)
                      =..++   ++++.+ |.||=.+=||-.|.+.+ ..  .|+.-.   .+|..+.       +-..   =|.+.+++.+.+ 
T Consensus       119 TMsAvRLARG~TGR-~~IiKFeGcYHGh~D~lLv~AGSGaaT~g~CG~P~SpGvP~~~~k~Tl~~PYND~~a~~~~f~~~  197 (434)
T TIGR00713       119 TMSAVRLARGFTGR-DKIIKFEGCYHGHHDALLVKAGSGAATLGSCGLPTSPGVPEDFAKLTLVLPYNDLEALEEAFEEY  197 (434)
T ss_pred             HHHHHHHHHHCCCC-CCEEEECCCCCCCHHHHCCCCCCHHHCCCCCCCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHC
T ss_conf             99999986310588-72788617641012320035452101046887788888701143113404517389999999867


Q ss_pred             --CCCCEEEC-CCCCCCCCCCCC-CCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCC
Q ss_conf             --12201211-354210000123-33321112233333201110122110000012233222111233322574146544
Q gi|254780602|r  164 --KTKWLFLN-SPSNPSGVVYSQ-NRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSK  239 (400)
Q Consensus       164 --~~k~i~l~-nP~NPTG~v~s~-~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK  239 (400)
                        +.-.|++= -..| -|.|.++ +.|+.|-++| +++|+++|.||+=..|.-.-.=..-+..+.||     |++  |.|
T Consensus       198 G~~iAgvIvEPv~GN-mGvvpP~~eFL~~Lr~lt-~e~g~LLI~DEV~TGFRva~~GAQ~yfgV~PD-----l~~--lGK  268 (434)
T TIGR00713       198 GEEIAGVIVEPVAGN-MGVVPPKKEFLEGLRELT-EEYGALLIFDEVITGFRVALGGAQEYFGVEPD-----LTT--LGK  268 (434)
T ss_pred             CCCEEEEEECCCCCC-CCCCCCCCCHHHHHHHHH-HHHCCEEEEECCCCHHHCCHHHCCHHCCCCCC-----CEE--ECH
T ss_conf             983437886120257-666488522358999999-87295775502210122133215011378741-----034--233


Q ss_pred             CCCCCCCCCCCCCCHHHHHHHHHH---HCCCCCCCCCCCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCCHHHHHHCCC
Q ss_conf             322344544422110122687531---0012223322222222222234676---4322222211000000024553047
Q gi|254780602|r  240 AYAMTGLRIGYAAGALSLIKSMIV---LQGQQTSGACSIAQWAAVEALNGPQ---DFVVNNRKIFEYRRDLCVAQLQGVP  313 (400)
Q Consensus       240 ~~~~~G~RiG~~v~~~~li~~l~~---~~~~~~~~~~~~~q~a~~~~l~~~~---~~~~~~~~~~~~~r~~~~~~L~~~~  313 (400)
                      ..| .|+-+|..++.+|+++++.-   +-|.-+.+-+.++..|..+.|+..+   +..++..+.-.+-.+-+.+.|++ .
T Consensus       269 I~G-GGlP~gA~gGrrEiM~~laP~G~vYQAGTlsGNPlam~AG~atLk~~~~~~~~Y~~l~~~~~~L~~g~~e~l~~-~  346 (434)
T TIGR00713       269 IIG-GGLPVGAFGGRREIMERLAPEGPVYQAGTLSGNPLAMAAGLATLKLLDEEKGVYTELDELAKRLAEGLSEVLED-K  346 (434)
T ss_pred             HHC-CCCCCEEECCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH-C
T ss_conf             233-76451012267568843178877445643555889999999999985348883489999999999999999982-7


Q ss_pred             CCEE-EECCCCEE-EEEE-CCCCCCCCCCCCCCCCCHH----HHHHHHHHHCCEEEECCCCCCCCCEEEEEEECCHHHHH
Q ss_conf             7603-30274089-9862-6410233211332248989----99999998739799835022899728999629999999
Q gi|254780602|r  314 GIRY-MIPDGAFY-LYPS-CQDLIGKKSPSGDVIRTDL----DFVNGLLEIEKVAVVQGSSFGHGPSIRISYAVSDAILE  386 (400)
Q Consensus       314 g~~~-~~p~g~~y-~~~~-~~~~~~~~~~~~~~~~~~~----~~~~~Ll~~~gV~v~pG~~Fg~~~~iRis~~~~~e~l~  386 (400)
                      |+.+ +.-.|+|| +|.. -....+..    +...+|.    +|...+|++ ||.+-| |.|  ..++ +|.+.++|.|+
T Consensus       347 gip~~~~~~gSMf~~FFtd~~~V~ny~----~A~~SD~e~F~~Ff~~mL~~-GVylpP-S~F--Ea~F-~S~AH~~E~i~  417 (434)
T TIGR00713       347 GIPHTVNRVGSMFSLFFTDEEEVTNYA----DAKKSDTELFAKFFHEMLEK-GVYLPP-SQF--EACF-ISAAHTEEDIE  417 (434)
T ss_pred             CCCEEEEECCCEEEEEECCCCCCCCHH----HHHHHHHHHHHHHHHHHHHC-CCCCCC-CCH--HHHH-HCCCCCHHHHH
T ss_conf             985899504400456657788987889----99886189889999999858-887898-721--1555-16777721178


Q ss_pred             ----HHHHHHHHHHHHC
Q ss_conf             ----9999999999860
Q gi|254780602|r  387 ----EACVRIKRFCHSL  399 (400)
Q Consensus       387 ----~al~rl~~~l~~l  399 (400)
                          .+++++.+.++++
T Consensus       418 yaq~~ti~a~~~~f~~~  434 (434)
T TIGR00713       418 YAQTNTIEAAEEVFAEL  434 (434)
T ss_pred             HHHHHHHHHHHHHHHCC
T ss_conf             99999999999998409


No 246
>PRK03715 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Provisional
Probab=99.45  E-value=1e-12  Score=97.56  Aligned_cols=335  Identities=12%  Similarity=0.112  Sum_probs=181.9

Q ss_pred             HCCCCEEECCCCC--CCCC-CCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf             8699726656589--7498-899999999999838875699877898999999998642101333322332334543333
Q gi|254780602|r   28 SKGIDVLCLTAGE--PDFD-MPENVKYAVVRAMERGETKYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVI  104 (400)
Q Consensus        28 ~~g~~ii~l~~G~--p~~~-~p~~i~~a~~~al~~~~~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l  104 (400)
                      ..|+..||+..|.  ..+. -+|.|.+|+++.++.-.+  +.+.-..+.+..+++.+....+    -+.|.+++++++|.
T Consensus        33 ~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~Q~~~l~~--~~~~~~~~~~~~la~~L~~~~~----~~~v~f~~sGsEAv  106 (395)
T PRK03715         33 HTGKRYLDFIQGWAVNCLGHCNPGMVEALAAQAEKLIN--PSPAFYNEPMAKLAGLLTQHSC----FDKVFFANSGAEAN  106 (395)
T ss_pred             CCCCEEEECCCCHHHHHHCCCCHHHHHHHHHHHHHCCC--CCCCCCCHHHHHHHHHHHCCCC----CCEEEEECCHHHHH
T ss_conf             98799988231788777458969999999999975476--7732027899999999841558----88799818758899


Q ss_pred             CCCCCCCC------CCC-CCCCCCCCCCCCCCCCCC-CCCCC---CCCCCCCC---CCCCCCHHHHHHCCCCCCCCCEEE
Q ss_conf             22222223------322-322223333232222222-22222---22222222---232221033310001221220121
Q gi|254780602|r  105 FNALMATV------NMG-DEVLIPRPYWVSYPDMVA-LCGGI---PVFVDTQQ---DDNFQVSPEKLEQAITPKTKWLFL  170 (400)
Q Consensus       105 ~~~~~~~~------~~G-d~Vlv~~P~y~~y~~~~~-~~g~~---~~~v~~~~---~~~~~~d~~~l~~~i~~~~k~i~l  170 (400)
                      ..+++..-      ..| .+|+...-+|-....... ..|..   ..+.|..+   ... .-|++.+++.+.+++-++++
T Consensus       107 E~AlKlAr~y~~~~~~gr~~ii~~~~~yHG~T~~~~s~sg~~~~~~~~~p~~~~~~~~~-~~d~~~~~~~~~~~~aAvii  185 (395)
T PRK03715        107 EGAIKLARKWGRKHKNGAYEIITFDHSFHGRTLATMSASGKPGWDTIFAPQVPGFPKAE-LNDIASVEKLITDKTVAVML  185 (395)
T ss_pred             HHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCC-CCCHHHHHHHCCCCEEEEEE
T ss_conf             99999999986246899845999757889874022104686444556789889967555-45589999734998079999


Q ss_pred             CCCC-CCCCCC-CCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCC-CCCCCCCCCCCCEEEEECCCCCCCCCCCCC
Q ss_conf             1354-210000-1233332111223333320111012211000001223-322211123332257414654432234454
Q gi|254780602|r  171 NSPS-NPSGVV-YSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQF-SNIVNVEPSLYERTLVVNGVSKAYAMTGLR  247 (400)
Q Consensus       171 ~nP~-NPTG~v-~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~-~s~~~~~~~~~~~~i~~~S~SK~~~~~G~R  247 (400)
                       -|- --.|.+ .+++-++++-++| +++|+++|.||+...|.=.|.-+ ..-..+.|+     |++  ++|..+ .|+-
T Consensus       186 -EPiqg~gG~~~~~~~yl~~lr~lc-~~~gillI~DEV~tGfGRtG~~fa~e~~gv~PD-----iv~--~gKgl~-gG~P  255 (395)
T PRK03715        186 -EPVQGEGGVIPATREFMQQLRALT-KQHGLLLIVDEVQTGCGRTGTLFAYELAGIEPD-----IMT--LGKGIG-GGVP  255 (395)
T ss_pred             -ECCCCCCCCCCCCHHHHHHHHHHH-HHCCCCEECCCCCCCCCCCCCCCCCCCCCCCCC-----EEE--ECCHHH-CCCC
T ss_conf             -378887798529889999999999-518973562011038886668530004899999-----899--752442-8985


Q ss_pred             CCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCHHHHHHCC---CCCEEEECCC
Q ss_conf             4422110122687531001222332222222222223467--6432222221100000002455304---7760330274
Q gi|254780602|r  248 IGYAAGALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGP--QDFVVNNRKIFEYRRDLCVAQLQGV---PGIRYMIPDG  322 (400)
Q Consensus       248 iG~~v~~~~li~~l~~~~~~~~~~~~~~~q~a~~~~l~~~--~~~~~~~~~~~~~~r~~~~~~L~~~---~g~~~~~p~g  322 (400)
                      +|.+++.+++. .+..-....+.+.+.+...++.+.|+.-  ++.+++    .+++-+++.+.|+++   ..+.-.+..|
T Consensus       256 l~av~~~~~i~-~~~~g~~g~T~~gnpla~aaa~a~L~~i~~~~l~~~----~~~~g~~l~~~L~~l~~~~~i~~vRG~G  330 (395)
T PRK03715        256 LAALLAKAEVA-VFEAGDQGGTYNGNPLMTAVGYAVISQLVAPGFLEG----VRARGEYLKEKLLELSAERGLEGERGEG  330 (395)
T ss_pred             EEEEEECHHHC-CCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHH----HHHHHHHHHHHHHHHHCCCCCEEEEECC
T ss_conf             28999826742-477898887989971899999999999962689999----9999999999999865039913574355


Q ss_pred             CEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCCCCEEEEE--EECCHHHHHHHHHHHHHHHHHC
Q ss_conf             0899862641023321133224898999999998739799835022899728999--6299999999999999999860
Q gi|254780602|r  323 AFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGHGPSIRIS--YAVSDAILEEACVRIKRFCHSL  399 (400)
Q Consensus       323 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~iRis--~~~~~e~l~~al~rl~~~l~~l  399 (400)
                       +++=+++....         .....+.+..+ .+.|+++...    ..+.||++  +..+++++++++++|++.|++|
T Consensus       331 -l~~~iel~~~~---------~~~~~~~~~~~-~~~gll~~~~----~~n~irl~PpL~it~~eid~~~~~l~~aL~~l  394 (395)
T PRK03715        331 -LLRALLLGKDI---------GPQIVEKARDM-QPDGLLLNAP----RPNLLRFMPALNVTTDEIDQMIAMLRSVLDKL  394 (395)
T ss_pred             -EEEEEEECCCC---------CHHHHHHHHHH-HHCCEEEECC----CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             -89999967887---------08999999999-8399899228----99989997994388999999999999999986


No 247
>PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated
Probab=99.45  E-value=3.4e-12  Score=94.33  Aligned_cols=336  Identities=12%  Similarity=0.108  Sum_probs=179.0

Q ss_pred             HCCCCEEECCCCC--CCCC-CCHHHHHHHHHHHHCCCCCCCCCCCC-HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf             8699726656589--7498-89999999999983887569987789-899999999864210133332233233454333
Q gi|254780602|r   28 SKGIDVLCLTAGE--PDFD-MPENVKYAVVRAMERGETKYTAVAGI-SPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHV  103 (400)
Q Consensus        28 ~~g~~ii~l~~G~--p~~~-~p~~i~~a~~~al~~~~~~Y~~~~G~-~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~  103 (400)
                      ..|+..||+..|-  ..+. -.|.|.+|+++.+++-.  |....+. -+....+|+.+.....  -.-+.|.+++++++|
T Consensus        40 ~dG~~ylD~~sg~~~~~lGh~~p~v~~Ai~~q~~~l~--~~~~~~~~~~~~~~lae~L~~~~p--~~l~~vff~~sGSEA  115 (428)
T PRK07986         40 ADGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMS--HVMFGGITHQPAIELCRKLVAMTP--QPLECVFLADSGSVA  115 (428)
T ss_pred             CCCCEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHCC--CCCCCCCCCHHHHHHHHHHHHHCC--CCCCEEEECCCHHHH
T ss_conf             9999999866228750047996999999999997578--703688677899999999998488--875869964862899


Q ss_pred             CCCCCCCC-------CCCCCCCCCCCCCCCCCCC-CCCCC-----------CCCC--CCCCCC---CCCCCC-CHHHHHH
Q ss_conf             32222222-------3322322223333232222-22222-----------2222--222222---223222-1033310
Q gi|254780602|r  104 IFNALMAT-------VNMGDEVLIPRPYWVSYPD-MVALC-----------GGIP--VFVDTQ---QDDNFQ-VSPEKLE  158 (400)
Q Consensus       104 l~~~~~~~-------~~~Gd~Vlv~~P~y~~y~~-~~~~~-----------g~~~--~~v~~~---~~~~~~-~d~~~l~  158 (400)
                      ...+++.-       ..+..+|+...-+|-.-.. .....           |..+  .+++..   .++.|. -|.++++
T Consensus       116 vE~AlKlAr~y~~~~g~~r~~ii~~~~syHG~T~gals~t~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  195 (428)
T PRK07986        116 VEVAMKMALQYWQAKGEPRQRFLTFRHGYHGDTFGAMSVCDPDNSMHSLYKGYLPENLFAPAPQSRFDGEWDERDIAPFA  195 (428)
T ss_pred             HHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf             99999999999997099864499983873899712257316864443455777998501378876656555712399999


Q ss_pred             CCCCC---CCCCEEECCC--CCCCCCC-CCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCC-CCCCCCCCCCEE
Q ss_conf             00122---1220121135--4210000-123333211122333332011101221100000122332-221112333225
Q gi|254780602|r  159 QAITP---KTKWLFLNSP--SNPSGVV-YSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSN-IVNVEPSLYERT  231 (400)
Q Consensus       159 ~~i~~---~~k~i~l~nP--~NPTG~v-~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s-~~~~~~~~~~~~  231 (400)
                      +.+..   ++-++++ -|  ++-.|.. .+++-+++|-++| +++|+++|.||+...+.=.|.-+.. -..+.|+     
T Consensus       196 ~~~~~~~~~iAAvii-EPi~qg~gG~~~p~~~yl~~lr~lc-~~~gillI~DEV~tGfGRtG~~fa~e~~gv~PD-----  268 (428)
T PRK07986        196 RLMAAHRHEIAAVIL-EPIVQGAGGMRIYHPEWLKRIRKLC-DREGILLIADEIATGFGRTGKLFACEHAGIAPD-----  268 (428)
T ss_pred             HHHHHCCCCEEEEEE-ECCCCCCCCCEECCHHHHHHHHHHH-HHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCC-----
T ss_conf             999747887018998-3244676983538999999999999-863963661100027886678650000478998-----


Q ss_pred             EEECCCCCCCCCCC-CCCCCCCCHHHHHHHHHHHC-----CCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCC
Q ss_conf             74146544322344-54442211012268753100-----1222332222222222223467--6432222221100000
Q gi|254780602|r  232 LVVNGVSKAYAMTG-LRIGYAAGALSLIKSMIVLQ-----GQQTSGACSIAQWAAVEALNGP--QDFVVNNRKIFEYRRD  303 (400)
Q Consensus       232 i~~~S~SK~~~~~G-~RiG~~v~~~~li~~l~~~~-----~~~~~~~~~~~q~a~~~~l~~~--~~~~~~~~~~~~~~r~  303 (400)
                      |+  +++|..+ .| .-+|.+++.+++.+.+..-.     ...+.+.+.+...++.+.|+.-  ++.+++    .++.-+
T Consensus       269 ii--t~gKgl~-gG~~Pl~av~~~~~i~~~~~~~~~~~f~hg~Tf~Gnpla~Aaa~a~L~~i~~~~l~~~----~~~~g~  341 (428)
T PRK07986        269 IL--CLGKALT-GGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAVANASLSLLESGDWQQQ----VAAIES  341 (428)
T ss_pred             EE--EECCCCC-CCCCCEEEEEECHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHH----HHHHHH
T ss_conf             89--9752013-8877538999869999630568765410177899998999999999999986569999----999999


Q ss_pred             CHHHHH---HCCCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCCCCEEEEE--E
Q ss_conf             002455---30477603302740899862641023321133224898999999998739799835022899728999--6
Q gi|254780602|r  304 LCVAQL---QGVPGIRYMIPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGHGPSIRIS--Y  378 (400)
Q Consensus       304 ~~~~~L---~~~~g~~~~~p~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~iRis--~  378 (400)
                      ++.+.|   ++.+.+.-++-.|.+. -++...           ..+...+. ..+.+.||.+.|.     .+.+|++  +
T Consensus       342 ~l~~~L~~L~~~~~V~dVRg~Gl~~-~ve~~~-----------p~~~~~~~-~~~~~~Gll~~~~-----g~~i~l~PPL  403 (428)
T PRK07986        342 QLREELAPLRDAEMVADVRVLGAIG-VVETTR-----------PVNMAALQ-RFFVEQGVWIRPF-----GKLIYLMPPY  403 (428)
T ss_pred             HHHHHHHHHHCCCCEEEEEECCEEE-EEEECC-----------CCCHHHHH-HHHHHCCCEEEEC-----CCEEEEECCC
T ss_conf             9999999875599578774267289-998079-----------45399999-9999799489745-----9999998991


Q ss_pred             ECCHHHHHHHHHHHHHHHHHC
Q ss_conf             299999999999999999860
Q gi|254780602|r  379 AVSDAILEEACVRIKRFCHSL  399 (400)
Q Consensus       379 ~~~~e~l~~al~rl~~~l~~l  399 (400)
                      ..+++++++++++|.+.|+..
T Consensus       404 iit~~ei~~~~~~l~~al~e~  424 (428)
T PRK07986        404 IILPEQLQRLTAAVNRAVQDE  424 (428)
T ss_pred             CCCHHHHHHHHHHHHHHHHHH
T ss_conf             499999999999999999755


No 248
>KOG0053 consensus
Probab=99.45  E-value=1.2e-13  Score=103.11  Aligned_cols=186  Identities=19%  Similarity=0.205  Sum_probs=124.3

Q ss_pred             HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----CCCCCCCCCCCCCC
Q ss_conf             99999999864210133332233233454333322222223322322223333232222222----22222222222222
Q gi|254780602|r   72 PLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDMVA----LCGGIPVFVDTQQD  147 (400)
Q Consensus        72 ~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l~~~~~~~~~~Gd~Vlv~~P~y~~y~~~~~----~~g~~~~~v~~~~~  147 (400)
                      +.|..+...+....|    ..+.++++.+..|++.+++.++.+|+.|++.+..|..-..+++    .+|++..+++++  
T Consensus        77 Pt~~~le~~iaal~g----a~~~l~fsSGmaA~~~al~~L~~~g~~iV~~~~~Y~gT~~~l~~~~~~~gie~~~vd~~--  150 (409)
T KOG0053          77 PTRDVLESGIAALEG----AAHALLFSSGMAAITVALLHLLPAGDHIVATGDVYGGTLRILRKFLPKFGGEGDFVDVD--  150 (409)
T ss_pred             CCHHHHHHHHHHHHC----CCEEEEECCCHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHCCEEEEECHH--
T ss_conf             966899999998718----86389934407899999998467898589717875009999999999709354330416--


Q ss_pred             CCCCCHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             32221033310001221220121135421000012333321112233333201110122110000012233222111233
Q gi|254780602|r  148 DNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSL  227 (400)
Q Consensus       148 ~~~~~d~~~l~~~i~~~~k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~  227 (400)
                           |++++++++.++++++++-+|.||+..+-+-++   |.++ +++++++|++|+.....++     ...+.+..  
T Consensus       151 -----~~~~~~~~i~~~t~~V~~ESPsNPll~v~DI~~---l~~l-a~~~g~~vvVDnTf~~p~~-----~~pL~lGA--  214 (409)
T KOG0053         151 -----DLKKILKAIKENTKAVFLESPSNPLLKVPDIEK---LARL-AHKYGFLVVVDNTFGSPYN-----QDPLPLGA--  214 (409)
T ss_pred             -----HHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHH---HHHH-HHHCCCEEEEECCCCCCCC-----CCHHHCCC--
T ss_conf             -----678899862667069999779997500456999---9998-7417978999577676333-----67121388--


Q ss_pred             CCEEEEECCCCCCCCCCC-CCCCCCCCH-HHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf             322574146544322344-544422110-1226875310012223322222222222
Q gi|254780602|r  228 YERTLVVNGVSKAYAMTG-LRIGYAAGA-LSLIKSMIVLQGQQTSGACSIAQWAAVE  282 (400)
Q Consensus       228 ~~~~i~~~S~SK~~~~~G-~RiG~~v~~-~~li~~l~~~~~~~~~~~~~~~q~a~~~  282 (400)
                         -|+++|.+|.++--+ .=.|.++.+ +++.+++...+.....+++.+......+
T Consensus       215 ---DIV~hSaTKyi~Ghsdvi~G~iv~n~~~~~~~l~~~~~~lg~~~~p~~~~ll~R  268 (409)
T KOG0053         215 ---DIVVHSATKYIGGHSDVIGGSVVLNSEELASRLKFLQEDLGWCEDPFDLFLLSR  268 (409)
T ss_pred             ---CEEEEEEEEEECCCCCEEEEEEECCCHHHHHHHHHHHHHHCCCCCHHHHHHHHC
T ss_conf             ---789985101444776635147761749999999999998557998899999866


No 249
>PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=99.45  E-value=2.4e-12  Score=95.30  Aligned_cols=342  Identities=13%  Similarity=0.081  Sum_probs=178.8

Q ss_pred             CCCCEEECCCC--CCCCC-CCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             69972665658--97498-8999999999998388756998778989999999986421013333223323345433332
Q gi|254780602|r   29 KGIDVLCLTAG--EPDFD-MPENVKYAVVRAMERGETKYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIF  105 (400)
Q Consensus        29 ~g~~ii~l~~G--~p~~~-~p~~i~~a~~~al~~~~~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l~  105 (400)
                      .|+..+|+..|  ...+. -.|.|.+|+++.+++-.+.... ....+....+|+.+....+-  +-+.|++++++++|..
T Consensus        51 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~Ql~~l~~~~~~-~~~~~~~~~lae~L~~~~p~--~l~~v~f~~SGSEA~E  127 (452)
T PRK06943         51 DGRRYLDAISSWWVNLFGHANPRINAALKDQLDTLEHAMLA-GCTHEPAIELAERLAALTGH--TLGHAFFASDGASAVE  127 (452)
T ss_pred             CCCEEEECCHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCC-CCCCHHHHHHHHHHHHHCCC--CCCEEEEECCHHHHHH
T ss_conf             89999983443897713579699999999998657471357-76876999999999974666--5575996087189999


Q ss_pred             CCCCCC-------CCCC-CCCCCCCCCCCCCCCC-CCCCCC--------------CCCCCCCCC---CC----CC-CCHH
Q ss_conf             222222-------3322-3222233332322222-222222--------------222222222---23----22-2103
Q gi|254780602|r  106 NALMAT-------VNMG-DEVLIPRPYWVSYPDM-VALCGG--------------IPVFVDTQQ---DD----NF-QVSP  154 (400)
Q Consensus       106 ~~~~~~-------~~~G-d~Vlv~~P~y~~y~~~-~~~~g~--------------~~~~v~~~~---~~----~~-~~d~  154 (400)
                      .++..-       ..+| ..||...-+|-..... ....|.              ..++.|-..   .+    .+ .-++
T Consensus       128 ~AiKlA~~~~~~rg~~~r~~ii~~~~syHG~T~ga~s~t~~~~~~~~~~p~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~  207 (452)
T PRK06943        128 IALKMSFHAWRNRGRGDKREFVCLANGYHGETIGALGVTDVALFKDAYDPLIRHAHVVASPDARGARPGETAADVAARAL  207 (452)
T ss_pred             HHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCEEECCCCHHHCCCCCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHH
T ss_conf             99999999998618998605873478868876301462685120335677677762458997556788887778999999


Q ss_pred             HHHHCCCCC---CCCCEEECCC--CCCCCCCC-CCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCC-CCCCCCCC
Q ss_conf             331000122---1220121135--42100001-23333211122333332011101221100000122332-22111233
Q gi|254780602|r  155 EKLEQAITP---KTKWLFLNSP--SNPSGVVY-SQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSN-IVNVEPSL  227 (400)
Q Consensus       155 ~~l~~~i~~---~~k~i~l~nP--~NPTG~v~-s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s-~~~~~~~~  227 (400)
                      +++++.+.+   ++-+|++ -|  +.-.|.+. +++-+++|-++| +++|+++|.||++..+.=.|.-+.. -..+.|+ 
T Consensus       208 ~~le~~~~~~~~~iAAviv-EP~iqg~gG~~~~~~~yl~~lr~lc-~~~giLlI~DEV~tGfGRTG~~fa~e~~gv~PD-  284 (452)
T PRK06943        208 ADVRRLFAERAGKIAALIV-EPLVQCAAGMAMHDPSYVRGLRALC-DEYGVHLIADEIAVGCGRTGTFFACEQAGVWPD-  284 (452)
T ss_pred             HHHHHHHHHCCCCEEEEEE-ECCCCCCCCEEECCHHHHHHHHHHH-HHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCE-
T ss_conf             9999999856997789999-5751467961858899999999998-644964871332028864517710234699882-


Q ss_pred             CCEEEEECCCCCCCCCCC-CCCCCCCCHHHHHHHHHHHC------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             322574146544322344-54442211012268753100------12223322222222222234676432222221100
Q gi|254780602|r  228 YERTLVVNGVSKAYAMTG-LRIGYAAGALSLIKSMIVLQ------GQQTSGACSIAQWAAVEALNGPQDFVVNNRKIFEY  300 (400)
Q Consensus       228 ~~~~i~~~S~SK~~~~~G-~RiG~~v~~~~li~~l~~~~------~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~  300 (400)
                          |+  +++|..+ .| +-+|.+++.+++.+.+..-.      ...+.+.+.+...++++.|+.-++  +...+..++
T Consensus       285 ----ii--t~gKgl~-gG~~Plsav~~~~ei~~~~~~~~~~~~~~h~~T~~GnplacAaala~L~~l~~--e~l~~~~~~  355 (452)
T PRK06943        285 ----FL--CLSKGIS-GGYLPLSLVLSRDEIFDAFYDDDTTRGFLHSHSYTGNPLACRAAVATLDLFAR--DDVLARNAR  355 (452)
T ss_pred             ----EE--EECCHHH-CCCCCCCEEEECHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH--CCHHHHHHH
T ss_conf             ----99--9765212-89865312430388998643799767867577889888999999999999986--579999999


Q ss_pred             CCCCHHHHHHCC---CCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCCCCEEEEE
Q ss_conf             000002455304---77603302740899862641023321133224898999999998739799835022899728999
Q gi|254780602|r  301 RRDLCVAQLQGV---PGIRYMIPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGHGPSIRIS  377 (400)
Q Consensus       301 ~r~~~~~~L~~~---~g~~~~~p~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~iRis  377 (400)
                      +-+++.+.|+++   +.+.-++..| +++=+++.....   .   .......++..+ .+.|+++.|.     .+.|||+
T Consensus       356 ~g~~l~~~L~~l~~~~~V~dVRG~G-L~~gvel~~~~~---~---~~~~~~~i~~~~-~~~Gll~~~~-----g~~i~l~  422 (452)
T PRK06943        356 KSALLRAALAPLAAHPQVRHLRQRG-TIFAFDVALDGD---A---ARTFSRRFFEHA-LERELLLRPI-----GTTVYLM  422 (452)
T ss_pred             HHHHHHHHHHHHHCCCCEEEEEECC-EEEEEEECCCCC---C---CHHHHHHHHHHH-HHCCEEEEEC-----CCEEEEE
T ss_conf             9999999999873599888863075-899999667876---4---579999999999-9699289864-----9999997


Q ss_pred             --EECCHHHHHHHHHHHHHHHHH
Q ss_conf             --629999999999999999986
Q gi|254780602|r  378 --YAVSDAILEEACVRIKRFCHS  398 (400)
Q Consensus       378 --~~~~~e~l~~al~rl~~~l~~  398 (400)
                        +..+++++++.+++|++.|++
T Consensus       423 PPL~it~~eid~~~~~L~~aL~~  445 (452)
T PRK06943        423 PPYVLDDEEIAWLAQRTRATLDA  445 (452)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             99038899999999999999999


No 250
>PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=99.45  E-value=2.9e-12  Score=94.76  Aligned_cols=345  Identities=14%  Similarity=0.109  Sum_probs=180.4

Q ss_pred             HCCCCEEECCCCC--CCCC-CCHHHHHHHHHHHHCCCCCCCCCCC-CHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf             8699726656589--7498-8999999999998388756998778-9899999999864210133332233233454333
Q gi|254780602|r   28 SKGIDVLCLTAGE--PDFD-MPENVKYAVVRAMERGETKYTAVAG-ISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHV  103 (400)
Q Consensus        28 ~~g~~ii~l~~G~--p~~~-~p~~i~~a~~~al~~~~~~Y~~~~G-~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~  103 (400)
                      .+|+..||+..|-  ..+. -.|.|.+|+.+.++.-.  |....| ..+.+..+|+.+.+...  -.-+.|++++++++|
T Consensus        44 ~dG~~YlD~~sg~~~~~lGH~~p~v~~Ai~~Q~~~l~--~~~~~~~~~~~~~elAe~L~~~~P--~~l~~v~f~~SGSEA  119 (467)
T PRK07030         44 FEGKRYLDAVSSWWVNVFGHANPRINQRIKDQVDQLE--HVILAGFSHQPVIELSERLVKITP--AGLDRVFYADNGSSA  119 (467)
T ss_pred             CCCCEEEECCCCHHHHCCCCCCHHHHHHHHHHHHHCC--CCCCCCCCCHHHHHHHHHHHHHCC--CCCCEEEEECCCHHH
T ss_conf             9999999945438863414896999999999997577--724577687799999999997388--886879983784899


Q ss_pred             CCCCCCCC-------CCCCC-CCCCCCCCCCCCCCCCCCC-CC------------CCCCCCCC-----CCC-C---C-CC
Q ss_conf             32222222-------33223-2222333323222222222-22------------22222222-----223-2---2-21
Q gi|254780602|r  104 IFNALMAT-------VNMGD-EVLIPRPYWVSYPDMVALC-GG------------IPVFVDTQ-----QDD-N---F-QV  152 (400)
Q Consensus       104 l~~~~~~~-------~~~Gd-~Vlv~~P~y~~y~~~~~~~-g~------------~~~~v~~~-----~~~-~---~-~~  152 (400)
                      ...++..-       ..+|. .|+...-+|-.-...+... |.            .++.+|..     +.+ .   + .-
T Consensus       120 vE~AiKlAr~y~~~~g~~gr~~iis~~~sYHG~T~ga~s~~~~~~~~~~~~p~~~~~~~~p~p~~~~~~~g~~~~~~~~~  199 (467)
T PRK07030        120 IEVALKMSFHYWRNRGKPRKKRFVTLTNSYHGETIAAMSVGDVALFTETYKPLLLDTIKVPSPDCYLRPEGMSWEEHSRN  199 (467)
T ss_pred             HHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCHHHHHHH
T ss_conf             99999999999998089887079873373434217777634870114787787888667589864356678888999999


Q ss_pred             HHHHHHCCCCC---CCCCEEECCC--CCCCCCC-CCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC-CCCCCCC
Q ss_conf             03331000122---1220121135--4210000-12333321112233333201110122110000012233-2221112
Q gi|254780602|r  153 SPEKLEQAITP---KTKWLFLNSP--SNPSGVV-YSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFS-NIVNVEP  225 (400)
Q Consensus       153 d~~~l~~~i~~---~~k~i~l~nP--~NPTG~v-~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~-s~~~~~~  225 (400)
                      .++++++.+.+   ++-++++ -|  ++=.|.+ .+++-+++|-++| +++|+++|.||+...|.=.|.-+. .-..+.|
T Consensus       200 ~~~~le~~l~~~~~~iAAvi~-EPiiqg~GG~~~~~~~yl~~lr~lc-~~~giLlI~DEV~tGfGRTG~~fa~e~~gv~P  277 (467)
T PRK07030        200 MFAHMEQTLAEHHDEIAAVIV-EPLIQGAGGMRMYHPVYLKLLREAC-DRYGVHLIHDEIAVGFGRTGTMFACEQAGIRP  277 (467)
T ss_pred             HHHHHHHHHHHCCCCEEEEEE-ECCCCCCCCCCCCCHHHHHHHHHHH-HHCCCEEECCCCEECCCCCCCCCCCCCCCCCC
T ss_conf             999999999847997469998-2323367997279989999999999-75594687250031786245853200567899


Q ss_pred             CCCCEEEEECCCCCCCCCCC-CCCCCCCCHHHHHHHHHHH--------CCCCCCCCCCCCCCCCCCCCCCC--CCCCCCC
Q ss_conf             33322574146544322344-5444221101226875310--------01222332222222222223467--6432222
Q gi|254780602|r  226 SLYERTLVVNGVSKAYAMTG-LRIGYAAGALSLIKSMIVL--------QGQQTSGACSIAQWAAVEALNGP--QDFVVNN  294 (400)
Q Consensus       226 ~~~~~~i~~~S~SK~~~~~G-~RiG~~v~~~~li~~l~~~--------~~~~~~~~~~~~q~a~~~~l~~~--~~~~~~~  294 (400)
                      +     |+  +++|..+ .| +-+|.+++.+++.+.+..-        +. .+.+.+.+...++.+.|+--  ++.+++.
T Consensus       278 D-----ii--t~aKgl~-gG~~Pl~av~~~~~I~~~~~~~~~~~~~~~Hg-~Ty~GnPlacAAala~L~ii~~e~l~~~~  348 (467)
T PRK07030        278 D-----FL--CLSKALT-GGYLPLAAVLTTDTVYQAFYDDYPTLRAFLHS-HSYTGNPLACAAALATLDIFEQDNVIEAN  348 (467)
T ss_pred             C-----EE--EEECCCC-CCCCCEEEEEECHHHHHHHHCCCCCCCCCCCC-CCCCCCHHHHHHHHHHHHHHHHCCHHHHH
T ss_conf             8-----89--9704311-68775389987489998763256555576758-89997999999999999999976899999


Q ss_pred             CCCCCCCCCCHHHH---HHCCCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCCC
Q ss_conf             22110000000245---530477603302740899862641023321133224898999999998739799835022899
Q gi|254780602|r  295 RKIFEYRRDLCVAQ---LQGVPGIRYMIPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGHG  371 (400)
Q Consensus       295 ~~~~~~~r~~~~~~---L~~~~g~~~~~p~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~  371 (400)
                      ++    .-+++.+.   |++.+.+.=++..| +++=+++-.-.....+..........+.+.++ +.|+++.|.     .
T Consensus       349 ~~----~g~~l~~~l~~l~~~p~VgdVRG~G-L~~giElv~d~~t~~p~~~~~~~~~~v~~~~~-~~G~l~~~~-----g  417 (467)
T PRK07030        349 RA----LARRMAEATAHLADHPHVAEVRQTG-MALAIEMVQDKASKTPYPWQERRGLKVYQHAL-ERGALLRPL-----G  417 (467)
T ss_pred             HH----HHHHHHHHHHHHHCCCCEEEEECCC-CEEEEEEECCCCCCCCCCHHHHHHHHHHHHHH-HCCCEEEEC-----C
T ss_conf             99----9999999999870799758883475-19999970378767888546679999999999-789889734-----9


Q ss_pred             CEEEEE--EECCHHHHHHHHHHHHHHHHH
Q ss_conf             728999--629999999999999999986
Q gi|254780602|r  372 PSIRIS--YAVSDAILEEACVRIKRFCHS  398 (400)
Q Consensus       372 ~~iRis--~~~~~e~l~~al~rl~~~l~~  398 (400)
                      +-||++  +..++++++++++.|.+.++.
T Consensus       418 nvi~~~PPL~it~~eid~~~~~l~~al~~  446 (467)
T PRK07030        418 SVVYFLPPYVITPEQIDFLAEVASEGIDI  446 (467)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             99999799278999999999999999999


No 251
>PTZ00094 serine hydroxymethyltransferase; Provisional
Probab=99.44  E-value=4.4e-12  Score=93.64  Aligned_cols=351  Identities=14%  Similarity=0.111  Sum_probs=189.8

Q ss_pred             HHHCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCC-CCCCCCC---C---CHHHHHHHHHH
Q ss_conf             873897589999999999998699726656589749889999999999983887-5699877---8---98999999998
Q gi|254780602|r    8 LRRVQPSATLVAAQRVRDLRSKGIDVLCLTAGEPDFDMPENVKYAVVRAMERGE-TKYTAVA---G---ISPLREAIVEK   80 (400)
Q Consensus         8 ~~~l~~s~~~~~~~~~~~~~~~g~~ii~l~~G~p~~~~p~~i~~a~~~al~~~~-~~Y~~~~---G---~~~lR~aia~~   80 (400)
                      ++...|. ++.+.++-.+.+..+   |+|-..+. + +++.+++++-..+.+.. -|||..+   |   ..++-+...++
T Consensus        12 l~~~Dpe-i~~~i~~E~~RQ~~~---l~LIASEN-~-~S~~v~~a~gS~ltnkYaEGyPg~Ryy~G~e~iD~iE~la~~r   85 (450)
T PTZ00094         12 LQEHDPE-IYELIEKEKDRQREG---LELIASEN-L-TSRAVLECLGSVFTNKYAEGYPGNRYYGGTEVVDKIENLCQKR   85 (450)
T ss_pred             HHHHCHH-HHHHHHHHHHHHHCC---CEEECCCC-C-CCHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf             5774999-999999999998779---26974267-5-7999999857742374558899844546642599999999999


Q ss_pred             HHHHCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--------CCCCC--CCCCCCCCCCCC
Q ss_conf             64210133332--2332334543333222222233223222233332322222--------22222--222222222223
Q gi|254780602|r   81 FRRDNDLHYTS--DQIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDM--------VALCG--GIPVFVDTQQDD  148 (400)
Q Consensus        81 ~~~~~g~~~~~--e~I~it~G~~~~l~~~~~~~~~~Gd~Vlv~~P~y~~y~~~--------~~~~g--~~~~~v~~~~~~  148 (400)
                      .++.||.+...  -||=..+|+ +|...++.++++|||+|+..+..-..|..-        ....|  .+.+++.+++++
T Consensus        86 a~~lF~~~~~~wgaNVqp~SGs-~AN~av~~all~pGD~im~l~l~~GGHltHG~~~~~~~v~~sg~~~~~~~Y~vd~~~  164 (450)
T PTZ00094         86 ALAAFNLDPEEWGVNVQPYSGS-PANFAVYTALLQPHDRIMGLDLPSGGHLTHGFYTAKKKVSATSIFFESLPYQVNEEG  164 (450)
T ss_pred             HHHHHCCCCCCCCCCCCCCCHH-HHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCC
T ss_conf             9998389854366105768669-999999999707999799843566886554334677775401345556773246489


Q ss_pred             CCCCHHHHHHCCC-CCCCCCEEECCCCCCCCCCCCCC-CCCCCCCCCCCCCCCEEECCCCC-CCCCCCCCCCCCCCCCCC
Q ss_conf             2221033310001-22122012113542100001233-33211122333332011101221-100000122332221112
Q gi|254780602|r  149 NFQVSPEKLEQAI-TPKTKWLFLNSPSNPSGVVYSQN-RLRALADVLVRNPHVHIISDDIY-EHIVYRNCQFSNIVNVEP  225 (400)
Q Consensus       149 ~~~~d~~~l~~~i-~~~~k~i~l~nP~NPTG~v~s~~-~l~~i~~~~a~~~~i~ii~De~Y-~~l~~~~~~~~s~~~~~~  225 (400)
                        .+|.|++++.. ..|+|+|++-      ++.|++. +.+++.++| ++.+.+++.|-+| ..|+-.+ .+++..... 
T Consensus       165 --~IDyd~~~~~a~~~kPklIi~G------~Say~r~id~k~~reIa-d~vGA~l~~D~AHiaGLIAgg-~~psP~~~A-  233 (450)
T PTZ00094        165 --LIDYDKLEKLAKAFRPKLIIAG------ASAYPRDIDYKRFREIC-DSVGAYLMADIAHTSGLVAAG-VLPSPFPYA-  233 (450)
T ss_pred             --CCCHHHHHHHHHHHCCCEEEEC------CCCCCCCCCHHHHHHHH-HHCCCEEEEECHHHHHHHCCC-CCCCCCCCC-
T ss_conf             --7489999999986199879988------82542543879999999-973998996314444432045-579843455-


Q ss_pred             CCCCEEEEECCCCCCCCCCCCCCCCCCCHH----HHHHHHHHHCCCCCCCCCCCCCCCCCC-CCCC-CCCCCCCCCCCCC
Q ss_conf             333225741465443223445444221101----226875310012223322222222222-2346-7643222222110
Q gi|254780602|r  226 SLYERTLVVNGVSKAYAMTGLRIGYAAGAL----SLIKSMIVLQGQQTSGACSIAQWAAVE-ALNG-PQDFVVNNRKIFE  299 (400)
Q Consensus       226 ~~~~~~i~~~S~SK~~~~~G~RiG~~v~~~----~li~~l~~~~~~~~~~~~~~~q~a~~~-~l~~-~~~~~~~~~~~~~  299 (400)
                           -|+..|..|++  +|-|-|.+...+    ++.+++.+.---...+.+...+.++.+ +|.+ ....+.+-.+...
T Consensus       234 -----DvVT~TTHKTL--rGPrGGiIl~~k~~~~e~~~kId~aVFPg~qggph~h~IAa~Ava~~Ea~~~efk~Ya~qVv  306 (450)
T PTZ00094        234 -----DVVTTTTHKSL--RGPRSGMIFFRKKIRPDIESKINQAVFPGLQGGPHFHQIAAIAVQLKEVCSPEWKEYAKQVV  306 (450)
T ss_pred             -----EEEECCCCCCC--CCCCCEEEEECCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_conf             -----04752222347--78984289844664089999854512885446777879999999999975767999999999


Q ss_pred             CCCCCHHHHHHCCCCCEEEECCC--CEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEE----CCCCCC-CCC
Q ss_conf             00000024553047760330274--08998626410233211332248989999999987397998----350228-997
Q gi|254780602|r  300 YRRDLCVAQLQGVPGIRYMIPDG--AFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVV----QGSSFG-HGP  372 (400)
Q Consensus       300 ~~r~~~~~~L~~~~g~~~~~p~g--~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~----pG~~Fg-~~~  372 (400)
                      +|.+.+.+.|.+. |+++.. .|  +..+.+|+...          ..+..+ ++.+|++.||.+.    |+..-. .+.
T Consensus       307 ~NAkaLa~~L~~~-G~~vvs-ggTdnHlvlvDl~~~----------g~~G~~-ae~~Le~~gI~~NkN~iP~D~~~~~~S  373 (450)
T PTZ00094        307 DNAKALAAELEKR-GFDLVT-GGTDNHLILWNLRPF----------GITGSK-VEKLLDAVNISVNKNTIPGDKSALAPS  373 (450)
T ss_pred             HHHHHHHHHHHHC-CCEEEE-CCCCCEEEEEECCCC----------CCCHHH-HHHHHHHCCEEECCCCCCCCCCCCCCC
T ss_conf             9999999999978-996950-899762799977778----------999999-999998749387478799999999987


Q ss_pred             EEEEEEE------CCHHHHHHHHHHHHHHH
Q ss_conf             2899962------99999999999999999
Q gi|254780602|r  373 SIRISYA------VSDAILEEACVRIKRFC  396 (400)
Q Consensus       373 ~iRis~~------~~~e~l~~al~rl~~~l  396 (400)
                      .|||.-.      -.++++++-.+-|.+.+
T Consensus       374 GiRiGT~a~TtrGm~e~em~~ia~lI~~~i  403 (450)
T PTZ00094        374 GIRLGTPALTSRGAVEEDFEFVADFLDRAV  403 (450)
T ss_pred             EEECCCHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf             033167788838998899999999999999


No 252
>PRK08466 consensus
Probab=99.44  E-value=3.9e-12  Score=93.99  Aligned_cols=339  Identities=13%  Similarity=0.110  Sum_probs=180.3

Q ss_pred             HCCCCEEECCCC--CCCCC-CCHHHHHHHHHHHHCCCCCCCCCCC-CHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf             869972665658--97498-8999999999998388756998778-9899999999864210133332233233454333
Q gi|254780602|r   28 SKGIDVLCLTAG--EPDFD-MPENVKYAVVRAMERGETKYTAVAG-ISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHV  103 (400)
Q Consensus        28 ~~g~~ii~l~~G--~p~~~-~p~~i~~a~~~al~~~~~~Y~~~~G-~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~  103 (400)
                      ..|++.+|+..|  -..+. -.|.|.+|+++.+++-.  |....+ ..+.+..+|+.+......  .-+.+++++++++|
T Consensus        43 ~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~Q~~~l~--~~~~~~~~~~~~~~lae~L~~~~p~--~l~~v~f~~sGseA  118 (430)
T PRK08466         43 FDGNAYIDCISSWWVNLFGHCNPYINEAIKKQIDELE--HVILAGFTHEPIIKLSERLCELTPR--GLNKCFYADNGSSA  118 (430)
T ss_pred             CCCCEEEECCCCHHHHHHCCCCHHHHHHHHHHHHHCC--CCCCCCCCCHHHHHHHHHHHHHCCC--CCCEEEEECCHHHH
T ss_conf             9989999924377976114797999999999996577--7345775877999999999985788--77879983771999


Q ss_pred             CCCCCCCC----CC--CC-CCCCCCCCCCCCCCCCC-CCCCC--------------CCCCCCCCCCCCCCCHHHHHHCCC
Q ss_conf             32222222----33--22-32222333323222222-22222--------------222222222232221033310001
Q gi|254780602|r  104 IFNALMAT----VN--MG-DEVLIPRPYWVSYPDMV-ALCGG--------------IPVFVDTQQDDNFQVSPEKLEQAI  161 (400)
Q Consensus       104 l~~~~~~~----~~--~G-d~Vlv~~P~y~~y~~~~-~~~g~--------------~~~~v~~~~~~~~~~d~~~l~~~i  161 (400)
                      ...+++.-    ..  .+ ..|+...-+|-.-...+ ...|.              ...++|-+. ....-+++.+++.+
T Consensus       119 ~E~AiKlAr~y~~~~g~~k~~iis~~~~yHG~T~ga~s~~~~~~~~~~~~p~~~~~~~~p~p~~~-~~~~~~~~~l~~~l  197 (430)
T PRK08466        119 IEVALKMSFHYHKNKGKKKSLFLSLSNSYHGETLGALSVGDVALYKDTYKPLLLECLQTPVPKDD-EAYQEALEALKRIL  197 (430)
T ss_pred             HHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC-HHHHHHHHHHHHHH
T ss_conf             99999999999752268975899964752688521102578400246778877686115899971-66788899999999


Q ss_pred             CC---CCCCEEECCC--CCCCCCC-CCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC-CCCCCCCCCCCEEEEE
Q ss_conf             22---1220121135--4210000-12333321112233333201110122110000012233-2221112333225741
Q gi|254780602|r  162 TP---KTKWLFLNSP--SNPSGVV-YSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFS-NIVNVEPSLYERTLVV  234 (400)
Q Consensus       162 ~~---~~k~i~l~nP--~NPTG~v-~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~-s~~~~~~~~~~~~i~~  234 (400)
                      ..   +.-++++ -|  ++-.|.. .+++-+++|.++| +++|+++|.||+...|.=.|.-+. .-..+.|+     |+ 
T Consensus       198 ~~~~~~iAAvI~-EPiiqg~gg~~~~~~~yl~~lr~lc-~~~gillI~DEV~tGfGRtG~~fa~~~~gv~PD-----iv-  269 (430)
T PRK08466        198 EKHAEEICAFIL-EPLVQCAGNMHMYSAEYLKEAIKLC-HKYNIHIIFDEIAVGFGRTGTMFALEQCGISPD-----FL-  269 (430)
T ss_pred             HHCCCCEEEEEE-ECCCCCCCCCCCCCHHHHHHHHHHH-HHCCCEEEEEEEECCCCCCCCCHHHHHCCCCCC-----EE-
T ss_conf             858997779999-7876677997689889999999998-535966887310117876676205541699998-----89-


Q ss_pred             CCCCCCCCCCC-CCCCCCCCHHHHHHHHHHH--------CCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCC
Q ss_conf             46544322344-5444221101226875310--------01222332222222222223467--6432222221100000
Q gi|254780602|r  235 NGVSKAYAMTG-LRIGYAAGALSLIKSMIVL--------QGQQTSGACSIAQWAAVEALNGP--QDFVVNNRKIFEYRRD  303 (400)
Q Consensus       235 ~S~SK~~~~~G-~RiG~~v~~~~li~~l~~~--------~~~~~~~~~~~~q~a~~~~l~~~--~~~~~~~~~~~~~~r~  303 (400)
                       +++|..+ .| +-+|.+++.+++.+.+..-        ++ .+.+.+.+...++.+.|+.-  ++.+++    .++.-+
T Consensus       270 -~~gK~l~-gG~~Pisav~~~~ei~~~~~~~~~~~~~~~h~-~T~~Gnpla~aaala~L~~l~~~~l~~~----~~~~g~  342 (430)
T PRK08466        270 -CLSKGIT-GGYLPLSVVLTSDEIYNAFYAPYEENKAFLHS-HSYTGNALACAAANATLDIFEDENVIEK----NQILSE  342 (430)
T ss_pred             -EECCCCC-CCCCCEEEEEECHHHHHHHHCCCCCCCCEECC-CCCCCCHHHHHHHHHHHHHHHHCCHHHH----HHHHHH
T ss_conf             -8684101-78877499998589998750565556660126-5788897999999999999996888899----999999


Q ss_pred             CHHHHHHC---CCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCCCCEEEEE--E
Q ss_conf             00245530---477603302740899862641023321133224898999999998739799835022899728999--6
Q gi|254780602|r  304 LCVAQLQG---VPGIRYMIPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGHGPSIRIS--Y  378 (400)
Q Consensus       304 ~~~~~L~~---~~g~~~~~p~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~iRis--~  378 (400)
                      ++.+.|++   .+.+.-.+.. |+++=+++.+...       ...-...+...++ +.||++.|.     .+.+|++  +
T Consensus       343 ~l~~~L~~l~~~~~v~~vRg~-Gl~~~iel~~~~~-------~~~~~~~i~~~~l-~~Gll~~~~-----g~~l~~~PpL  408 (430)
T PRK08466        343 FIQKELSRLEKLDFVGNLRQC-GMVFAFELLGTDT-------KERVGLFVFQKAL-KKGLLLRPL-----GNTIYFMPPY  408 (430)
T ss_pred             HHHHHHHHHHCCCCEEEEEEC-CEEEEEEEECCCC-------CHHHHHHHHHHHH-HCCEEEECC-----CCEEEEECCC
T ss_conf             999999986249975788412-5389999845885-------0379999999999-789389114-----9999997985


Q ss_pred             ECCHHHHHHHHHHHHHHHHHCC
Q ss_conf             2999999999999999998609
Q gi|254780602|r  379 AVSDAILEEACVRIKRFCHSLQ  400 (400)
Q Consensus       379 ~~~~e~l~~al~rl~~~l~~l~  400 (400)
                      ..+++++++++++|++.|++||
T Consensus       409 ~it~eeid~~~~~l~~al~elk  430 (430)
T PRK08466        409 IITKEEIKKVIEVLEEIIKELK  430 (430)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHC
T ss_conf             8899999999999999999739


No 253
>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase; InterPro: IPR006234    These sequences represent O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis..
Probab=99.44  E-value=1.2e-14  Score=109.21  Aligned_cols=202  Identities=20%  Similarity=0.312  Sum_probs=142.2

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCC
Q ss_conf             223323345433332222222332232222333----3232222222222222222222223222103331000122122
Q gi|254780602|r   91 SDQIIVGTGAKHVIFNALMATVNMGDEVLIPRP----YWVSYPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQAITPKTK  166 (400)
Q Consensus        91 ~e~I~it~G~~~~l~~~~~~~~~~Gd~Vlv~~P----~y~~y~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~k  166 (400)
                      +|+-+-|..+..+|+.++.+||..||+|+...=    |......++...|.++.+++.+       |+.+.+++++++||
T Consensus        69 Ae~A~AtAsGMsAi~A~l~~L~~AGDhvv~sRSlFGst~~~~~~~l~rFGv~v~fv~~~-------Dl~~WeaA~~~nTk  141 (386)
T TIGR01325        69 AERAVATASGMSAILAALMALLSAGDHVVASRSLFGSTVVLVSEILPRFGVEVSFVDAT-------DLKAWEAALKPNTK  141 (386)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHCCEEEEEECCCCCCCEEEEECCCC-------CHHHHHHHCCCCCC
T ss_conf             03788642138999999999861687799851000320021012534354067517867-------87888985699950


Q ss_pred             CEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCC
Q ss_conf             01211354210000123333211122333332011101221100000122332221112333225741465443223445
Q gi|254780602|r  167 WLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTGL  246 (400)
Q Consensus       167 ~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~~~G~  246 (400)
                      ++++=+|+||-+.+.+   ++++.|+ |.-.+..||+|.++.         +|+.+- |--..--|+++|.+|.-=--|=
T Consensus       142 l~f~EtPSNPl~e~~D---i~AlaEL-AHA~GA~lvvDN~f~---------tP~~qq-PL~lGaDvvv~SATK~IDGqGR  207 (386)
T TIGR01325       142 LVFVETPSNPLAELVD---IAALAEL-AHAVGALLVVDNVFA---------TPVLQQ-PLKLGADVVVYSATKHIDGQGR  207 (386)
T ss_pred             EEEEECCCCHHHHHHH---HHHHHHH-HHHCCCEEEEHHHHH---------HHHHCC-CCCCCCEEEEECCCEEECCCCC
T ss_conf             7886368870467999---9999998-873341002114564---------100138-8645640798646201138754


Q ss_pred             CC-CCCCCHHHHHHH-HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEE
Q ss_conf             44-422110122687-531001222332222222222223467643222222110000000245530477603
Q gi|254780602|r  247 RI-GYAAGALSLIKS-MIVLQGQQTSGACSIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQGVPGIRY  317 (400)
Q Consensus       247 Ri-G~~v~~~~li~~-l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~~~~~L~~~~g~~~  317 (400)
                      =+ |.+.++++++++ ...+..+..-.+|++.-|..++.|+..    .-..+.-......+.+.|++.|+++.
T Consensus       208 vlGGv~~G~~e~~~~~v~~~lr~~GpalSpFNAW~lLkGlETL----~lR~~~~~~sAl~lA~~L~~~p~v~~  276 (386)
T TIGR01325       208 VLGGVILGSEELMEEFVAKFLRHTGPALSPFNAWVLLKGLETL----SLRVQKQADSALALAEWLEEQPKVQA  276 (386)
T ss_pred             EECCEEECCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHCCCEEE
T ss_conf             0121453607775348999974257432367899985034578----99998614789999999970895579


No 254
>PRK07894 consensus
Probab=99.43  E-value=4.4e-12  Score=93.64  Aligned_cols=338  Identities=14%  Similarity=0.113  Sum_probs=179.4

Q ss_pred             HCCCCEEECCCC--CCCCC-CCHHHHHHHHHHHHCCCCCCCCCCCC-HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf             869972665658--97498-89999999999983887569987789-899999999864210133332233233454333
Q gi|254780602|r   28 SKGIDVLCLTAG--EPDFD-MPENVKYAVVRAMERGETKYTAVAGI-SPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHV  103 (400)
Q Consensus        28 ~~g~~ii~l~~G--~p~~~-~p~~i~~a~~~al~~~~~~Y~~~~G~-~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~  103 (400)
                      ..|+..+|+..|  ...+. -.|.|.+|+++.+++-.  |....+. .+....+|+.+.+...  -.-++|++++++++|
T Consensus        48 ~dG~~ylD~~sg~~~~~lGh~hp~i~~Ai~~Q~~~l~--~~~~~~~~~~~~~~lae~L~~~~p--~~l~~vff~~sGSeA  123 (430)
T PRK07894         48 GGPIEVLDAMSSWWTAIHGHGHPVLDAALTRQLATMN--HVMFGGLTHEPAARLAQLLVDITP--AGLDTVFFSDSGSVS  123 (430)
T ss_pred             CCCCEEEECCHHHHHHHCCCCCHHHHHHHHHHHHHCC--CCCCCCCCCHHHHHHHHHHHHHCC--CCCCEEEEECCCHHH
T ss_conf             9999988730679854037698999999999997577--845687576899999999998488--887979972781889


Q ss_pred             CCCCCCCC-------CCCCC-CCCCCCCCCCCCCC-CCCCCC---C----------CCCCCCCCCCCCCC-CHHHHHHCC
Q ss_conf             32222222-------33223-22223333232222-222222---2----------22222222223222-103331000
Q gi|254780602|r  104 IFNALMAT-------VNMGD-EVLIPRPYWVSYPD-MVALCG---G----------IPVFVDTQQDDNFQ-VSPEKLEQA  160 (400)
Q Consensus       104 l~~~~~~~-------~~~Gd-~Vlv~~P~y~~y~~-~~~~~g---~----------~~~~v~~~~~~~~~-~d~~~l~~~  160 (400)
                      ...++...       -.+|. +|+...-+|-.-.. .....+   .          ...+.+..+. .|. ...+++++.
T Consensus       124 vE~AiKlAr~y~~~~g~~~r~~ii~~~~sYHG~T~ga~s~t~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~~~~l~~~  202 (430)
T PRK07894        124 VEVAVKMALQYWRSRGRPGKHRLMTWRGGYHGDTFTPMSVCDPDGGMHSLWTDVLARQVFAPQVPR-DYDPAYSAAFEAQ  202 (430)
T ss_pred             HHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCC-CCCHHHHHHHHHH
T ss_conf             999999999999971887750799971740477711477533877766666788877666899974-3267889999999


Q ss_pred             CC---CCCCCEEECCC--CCCCCCCC-CCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCC-CCCCCCCCCCEEEE
Q ss_conf             12---21220121135--42100001-23333211122333332011101221100000122332-22111233322574
Q gi|254780602|r  161 IT---PKTKWLFLNSP--SNPSGVVY-SQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSN-IVNVEPSLYERTLV  233 (400)
Q Consensus       161 i~---~~~k~i~l~nP--~NPTG~v~-s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s-~~~~~~~~~~~~i~  233 (400)
                      +.   +++-++++ -|  ++-.|.+. +++-+++|.++| +++|+++|.||+...+.=.|.-+.. -..+.|+     |+
T Consensus       203 l~~~~~~iAaii~-EP~iqg~GG~~~p~~~yl~~lr~lc-~~~gillI~DEV~tGfGRTG~~fa~e~~gv~PD-----ii  275 (430)
T PRK07894        203 LAQHADELAAVIV-EPVVQGAGGMRFHDPRYLRDLRDIC-DRHDVLLIFDEIATGFGRTGALFAADHAGVSPD-----IM  275 (430)
T ss_pred             HHHCCCCEEEEEE-ECCCCCCCCCCCCCHHHHHHHHHHH-HHCCCCEEECCCCCCCCCCCCCCHHHCCCCCCE-----EE
T ss_conf             9846998669999-7874388981028999999999987-512762650213117873567635431898863-----99


Q ss_pred             ECCCCCCCCCCC-CCCCCCCCHHHHHHHHHHHC-----CCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCH
Q ss_conf             146544322344-54442211012268753100-----122233222222222222346--7643222222110000000
Q gi|254780602|r  234 VNGVSKAYAMTG-LRIGYAAGALSLIKSMIVLQ-----GQQTSGACSIAQWAAVEALNG--PQDFVVNNRKIFEYRRDLC  305 (400)
Q Consensus       234 ~~S~SK~~~~~G-~RiG~~v~~~~li~~l~~~~-----~~~~~~~~~~~q~a~~~~l~~--~~~~~~~~~~~~~~~r~~~  305 (400)
                        +++|..+ .| +-+|.+++.+++.+.+..-.     ...+.+.+.+...++.+.|+.  .++.+++.++.-+.-++.+
T Consensus       276 --~~aKgl~-gGy~Pl~avl~~~~i~~~~~~~~~~~~~Hg~Ty~GnplacAaala~L~~i~~e~l~~~~~~~g~~l~~~L  352 (430)
T PRK07894        276 --CVGKALT-GGYLTLAATLCTADVAHTISAGEAGALMHGPTFMANPLACAVSVASVELLLGQDWRTRVAEIEAGLTAGL  352 (430)
T ss_pred             --EECCHHH-CCCCCCEEEEEHHHHHHHCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_conf             --9773544-8997620122429899745678888612378988898999999999999985679999999999999999


Q ss_pred             HHHHHCCCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCCCCEEEEE--EECCHH
Q ss_conf             245530477603302740899862641023321133224898999999998739799835022899728999--629999
Q gi|254780602|r  306 VAQLQGVPGIRYMIPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGHGPSIRIS--YAVSDA  383 (400)
Q Consensus       306 ~~~L~~~~g~~~~~p~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~iRis--~~~~~e  383 (400)
                       +.+++.+.+.=++..| +..-+++.+..           +..... ..+.++||++.|.     .+.||+.  +..+++
T Consensus       353 -~~l~~~p~V~dVRg~G-l~~~vel~~~~-----------~~~~~~-~~a~~~Gvl~r~~-----~n~i~l~PPL~it~~  413 (430)
T PRK07894        353 -APARALPGVTDVRVLG-AIGVIELDRPV-----------DLAVAT-PAALDHGVWLRPF-----RNLVYAMPPYICTPA  413 (430)
T ss_pred             -HHHCCCCCEEEECCCC-EEEEEEECCCC-----------CHHHHH-HHHHHCCCEEEEC-----CCEEEEECCCCCCHH
T ss_conf             -9745799769894668-09999967845-----------689999-9999799389854-----999999799468999


Q ss_pred             HHHHHHHHHHHHHHHC
Q ss_conf             9999999999999860
Q gi|254780602|r  384 ILEEACVRIKRFCHSL  399 (400)
Q Consensus       384 ~l~~al~rl~~~l~~l  399 (400)
                      ++++.++.|.+.++++
T Consensus       414 eid~~~~~l~eal~~l  429 (430)
T PRK07894        414 EIAQITSAMVEVARAL  429 (430)
T ss_pred             HHHHHHHHHHHHHHHH
T ss_conf             9999999999999960


No 255
>cd00615 Orn_deC_like Ornithine decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.
Probab=99.42  E-value=7.1e-15  Score=110.66  Aligned_cols=168  Identities=20%  Similarity=0.332  Sum_probs=114.3

Q ss_pred             CHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             98999999998642101333322332334543333222222233223222233332322222222222222222222232
Q gi|254780602|r   70 ISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDMVALCGGIPVFVDTQQDDN  149 (400)
Q Consensus        70 ~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l~~~~~~~~~~Gd~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~~~~  149 (400)
                      ..+..+..|+.|    |.   ..-.+++||++.++..++.++|+|||+|+++.-+--.....+.++|++|++++...+..
T Consensus        61 I~eAq~laA~~~----ga---~~s~flvnGsT~g~~a~i~a~~~~gd~vlv~RN~HkSv~~gl~l~g~~Pvyl~p~~~~~  133 (294)
T cd00615          61 IKEAQELAARAF----GA---KHTFFLVNGTSSSNKAVILAVCGPGDKILIDRNCHKSVINGLVLSGAVPVYLKPERNPY  133 (294)
T ss_pred             HHHHHHHHHHHH----CC---CCEEEEECCHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHCCCEEEEEECCCCCC
T ss_conf             999999999983----99---96699827726999999998328999899826518999999998698489960643555


Q ss_pred             ----CCCHHHHHHCCCC--CCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCC-CCCCCCCCCCCCCC
Q ss_conf             ----2210333100012--2122012113542100001233332111223333320111012211-00000122332221
Q gi|254780602|r  150 ----FQVSPEKLEQAIT--PKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYE-HIVYRNCQFSNIVN  222 (400)
Q Consensus       150 ----~~~d~~~l~~~i~--~~~k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~-~l~~~~~~~~s~~~  222 (400)
                          ..++++++++++.  +..|++++++|+ --|.+++   +++|+++| +++++.|++||+|. ++.|.+.-+.+...
T Consensus       134 ~gi~~~i~~~~~~~al~~~p~~kav~lt~Pt-Y~G~~~D---l~~i~~~~-h~~~~~llVDEAhGah~~F~~~lp~~a~~  208 (294)
T cd00615         134 YGIAGGIPPETFKKALIEHPDAKAAVITNPT-YYGICYN---LRKIVEEA-HHRGLPVLVDEAHGAHFRFHPILPSSAAM  208 (294)
T ss_pred             CCCCCCCCHHHHHHHHHHCCCCCEEEEECCC-CCEEEEC---HHHHHHHH-HHCCCEEEEECCCHHHHHCCCCCCCCHHH
T ss_conf             6953899999999999858996589997799-8877668---99999998-40499799977540344318778755666


Q ss_pred             CCCCCCCEEEEECCCCCCCCCCCCCCC-CCCCHHH
Q ss_conf             112333225741465443223445444-2211012
Q gi|254780602|r  223 VEPSLYERTLVVNGVSKAYAMTGLRIG-YAAGALS  256 (400)
Q Consensus       223 ~~~~~~~~~i~~~S~SK~~~~~G~RiG-~~v~~~~  256 (400)
                      .  +   -.+++.|.-|+.  |++.-+ ++....+
T Consensus       209 ~--G---AD~vv~S~HKtL--~altQ~s~lh~~~~  236 (294)
T cd00615         209 A--G---ADIVVQSTHKTL--PALTQGSMIHVKGD  236 (294)
T ss_pred             C--C---CEEEEECHHHCC--CCCCHHHHEEECCC
T ss_conf             6--9---639996232145--33222532023799


No 256
>COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]
Probab=99.41  E-value=1.6e-11  Score=90.31  Aligned_cols=345  Identities=15%  Similarity=0.108  Sum_probs=200.4

Q ss_pred             HHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCC-CCC------CCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf             89999999999998699726656589749889999999999983887-569------98778989999999986421013
Q gi|254780602|r   15 ATLVAAQRVRDLRSKGIDVLCLTAGEPDFDMPENVKYAVVRAMERGE-TKY------TAVAGISPLREAIVEKFRRDNDL   87 (400)
Q Consensus        15 ~~~~~~~~~~~~~~~g~~ii~l~~G~p~~~~p~~i~~a~~~al~~~~-~~Y------~~~~G~~~lR~aia~~~~~~~g~   87 (400)
                      .++++.++..+.++.   .|.|=.-|. | +++.|++|+-.-+.+.. -||      +...-..++-+...++.++.||.
T Consensus        13 ~i~~~i~~e~~rq~~---~ieLIASEN-~-~S~aV~~A~gS~ltnKYAEGyPgkRyYgGce~VD~vE~laierak~LFga   87 (413)
T COG0112          13 EIFEAIQQELERQRE---HIELIASEN-F-TSPAVMEAQGSDLTNKYAEGYPGKRYYGGCEYVDEVEELAIERAKKLFGA   87 (413)
T ss_pred             HHHHHHHHHHHHHHH---CEEEEECCC-C-CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHCC
T ss_conf             999999999998863---433551255-4-78999999745775301158997635678721799999999999998488


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---CCCCCC--CCCCCCCCCCCCCCCCHHHHHHCCC-
Q ss_conf             3332233233454333322222223322322223333232222---222222--2222222222232221033310001-
Q gi|254780602|r   88 HYTSDQIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPD---MVALCG--GIPVFVDTQQDDNFQVSPEKLEQAI-  161 (400)
Q Consensus        88 ~~~~e~I~it~G~~~~l~~~~~~~~~~Gd~Vlv~~P~y~~y~~---~~~~~g--~~~~~v~~~~~~~~~~d~~~l~~~i-  161 (400)
                      +  --||=+.+|+ +|...++.++++|||+|+-.+-....|..   -....|  .+.+.++.+++++ .+|.|++++.. 
T Consensus        88 ~--~anVQPhSGs-~AN~av~~All~pGD~imgm~l~~GGHltHg~~v~~sG~~~~~v~Y~vd~et~-~IDyD~~~k~a~  163 (413)
T COG0112          88 E--YANVQPHSGS-QANQAVYLALLQPGDTIMGLDLSHGGHLTHGSPVNFSGKLFNVVSYGVDPETG-LIDYDEVEKLAK  163 (413)
T ss_pred             C--CCCCCCCCCH-HHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCC-CCCHHHHHHHHH
T ss_conf             7--5045888756-89999999973898857505678787655799877664057767624063347-517999999999


Q ss_pred             CCCCCCEEECCCCCCCCCCCCCC-CCCCCCCCCCCCCCCEEECCCCC-CCCCCCCCCCCCCCCCCCCCCCEEEEECCCCC
Q ss_conf             22122012113542100001233-33211122333332011101221-10000012233222111233322574146544
Q gi|254780602|r  162 TPKTKWLFLNSPSNPSGVVYSQN-RLRALADVLVRNPHVHIISDDIY-EHIVYRNCQFSNIVNVEPSLYERTLVVNGVSK  239 (400)
Q Consensus       162 ~~~~k~i~l~nP~NPTG~v~s~~-~l~~i~~~~a~~~~i~ii~De~Y-~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK  239 (400)
                      ..|+|+|+.-      ++.|++. +++++.++| .+-+.+++.|-+| ..|+=.| .|++....      --++.+|..|
T Consensus       164 e~kPKlii~G------~SaY~r~id~~~~reIa-d~VGA~L~~DmAHiaGLVA~G-~~p~P~~~------AdvVTtTTHK  229 (413)
T COG0112         164 EVKPKLIIAG------GSAYSRPIDFKRFREIA-DEVGAYLMVDMAHVAGLIAGG-VHPNPLPH------ADVVTTTTHK  229 (413)
T ss_pred             HHCCCEEEEC------CCCCCCCCCHHHHHHHH-HHHCCEEEEHHHHHHHHHHCC-CCCCCCCC------CCEEECCCCC
T ss_conf             8499789977------60355446789999999-871936772177888887456-67999875------5267577534


Q ss_pred             CCCCCCCCCCCCCCHH-HHHHHHHHHCCCCCCCCCCCCCCC-C--CCCCCC-CCCCCCCCCCCCCCCCCCHHHHHHCCCC
Q ss_conf             3223445444221101-226875310012223322222222-2--222346-7643222222110000000245530477
Q gi|254780602|r  240 AYAMTGLRIGYAAGAL-SLIKSMIVLQGQQTSGACSIAQWA-A--VEALNG-PQDFVVNNRKIFEYRRDLCVAQLQGVPG  314 (400)
Q Consensus       240 ~~~~~G~RiG~~v~~~-~li~~l~~~~~~~~~~~~~~~q~a-~--~~~l~~-~~~~~~~~~~~~~~~r~~~~~~L~~~~g  314 (400)
                      +|  +|-|-|.+.++. ++.+++.+.-  .......+..+. +  .-++.+ .+.-+++-.+...+|.+.+.+.|.+. |
T Consensus       230 Tl--rGPrGG~Il~~~eel~kkin~aV--FPg~qggpl~HviAakaVa~~Eal~p~fk~Ya~qVv~NAkaLAe~l~~~-G  304 (413)
T COG0112         230 TL--RGPRGGIILTNDEELAKKINSAV--FPGLQGGPLMHVIAAKAVAFKEALEPEFKEYAKQVVKNAKALAEALKER-G  304 (413)
T ss_pred             CC--CCCCCEEEEECCHHHHHHHHHHC--CCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHC-C
T ss_conf             77--89984179836299998764000--7766788278889999999999728138999999999999999999976-9


Q ss_pred             CEEEECCC--CEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEEC-CCCCCC-----CCEEEEEE------EC
Q ss_conf             60330274--089986264102332113322489899999999873979983-502289-----97289996------29
Q gi|254780602|r  315 IRYMIPDG--AFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQ-GSSFGH-----GPSIRISY------AV  380 (400)
Q Consensus       315 ~~~~~p~g--~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~p-G~~Fg~-----~~~iRis~------~~  380 (400)
                      +++.. .|  +-.+.+|+...          ..+ -.-+..+|++.||.+.- +-.|.+     ...|||.-      +-
T Consensus       305 ~~vvs-GgTdnHl~lVDl~~~----------~~~-Gk~ae~~L~~~~It~NKN~iP~D~~~p~~tSGIRiGtpa~TtrG~  372 (413)
T COG0112         305 FKVVS-GGTDNHLVLVDLRSK----------GLT-GKKAEAALERAGITVNKNAIPFDPESPFVTSGIRIGTPAVTTRGF  372 (413)
T ss_pred             CEEEC-CCCCCEEEEEECCCC----------CCC-HHHHHHHHHHCCEEECCCCCCCCCCCCCCCCCCEECCHHHHHCCC
T ss_conf             86715-886444899972467----------987-789999999709765268899999888787663406688863579


Q ss_pred             CHHHHHHHHHHHHHHHHHC
Q ss_conf             9999999999999999860
Q gi|254780602|r  381 SDAILEEACVRIKRFCHSL  399 (400)
Q Consensus       381 ~~e~l~~al~rl~~~l~~l  399 (400)
                      .++++++-.+-|.+.++..
T Consensus       373 ~e~e~~~Ia~~I~~vl~~~  391 (413)
T COG0112         373 GEAEMEEIADLIADVLDGL  391 (413)
T ss_pred             CHHHHHHHHHHHHHHHHCC
T ss_conf             8899999999999999550


No 257
>PRK06918 4-aminobutyrate aminotransferase; Reviewed
Probab=99.41  E-value=2.3e-12  Score=95.37  Aligned_cols=347  Identities=13%  Similarity=0.131  Sum_probs=173.2

Q ss_pred             CCCCEEECCCCCC--CCC-CCHHHHHHHHHHHHCCCC-CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf             6997266565897--498-899999999999838875-699877898999999998642101333322332334543333
Q gi|254780602|r   29 KGIDVLCLTAGEP--DFD-MPENVKYAVVRAMERGET-KYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVI  104 (400)
Q Consensus        29 ~g~~ii~l~~G~p--~~~-~p~~i~~a~~~al~~~~~-~Y~~~~G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l  104 (400)
                      .|+..||+..|-.  .+. -+|.|.+|+++.++.-.+ +|.... .+ -+..+|+.+.+...-.. .+.|.+++++++|.
T Consensus        53 dG~~yLD~~~g~~~~~lGh~~p~v~~Ai~~Q~~~l~~~~~~~~~-~~-~~~~lae~L~~~~p~~~-~~~v~f~~SGsEAv  129 (454)
T PRK06918         53 DGNQYIDFAGAIGTINVGHCHPKVKEALHKQVDQYIHTGFNVMM-YE-PYIELAEKLAALAPGSF-DKQVLFLNSGAEAV  129 (454)
T ss_pred             CCCEEEEECCCHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCC-CH-HHHHHHHHHHHHCCCCC-CCEEEEECCCHHHH
T ss_conf             97999991506986552689799999999998646676777554-76-99999999998477454-74699827851799


Q ss_pred             CCCCCCCC-CCC-CCCCCCCCCCCCCCCCC-CCCCC-------------CCCCCCCC----CCCC-----C-CCHHHHHH
Q ss_conf             22222223-322-32222333323222222-22222-------------22222222----2232-----2-21033310
Q gi|254780602|r  105 FNALMATV-NMG-DEVLIPRPYWVSYPDMV-ALCGG-------------IPVFVDTQ----QDDN-----F-QVSPEKLE  158 (400)
Q Consensus       105 ~~~~~~~~-~~G-d~Vlv~~P~y~~y~~~~-~~~g~-------------~~~~v~~~----~~~~-----~-~~d~~~l~  158 (400)
                      ..++...- ..| ..|+..+-+|......+ ...|.             .+..+|..    ...+     + ....++++
T Consensus       130 E~AlKlAr~~t~r~~ii~~~~~yHG~T~~a~s~t~~~~~~~~~~~p~~p~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~  209 (454)
T PRK06918        130 ENAVKIARKYTKRQGIIAFSKGFHGRTLMTMTMTSKVKPYKFGFGPFAPEVYKAPFPYEYRRPEGLTEEQYDDFIIEEFK  209 (454)
T ss_pred             HHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf             99999999872887567633871786244565307985422467888998366578642357789976677899999999


Q ss_pred             CCC----CC-CCCCEEECCC-CCCCCCCC-CCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC-CCCCCCCCCCCE
Q ss_conf             001----22-1220121135-42100001-2333321112233333201110122110000012233-222111233322
Q gi|254780602|r  159 QAI----TP-KTKWLFLNSP-SNPSGVVY-SQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFS-NIVNVEPSLYER  230 (400)
Q Consensus       159 ~~i----~~-~~k~i~l~nP-~NPTG~v~-s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~-s~~~~~~~~~~~  230 (400)
                      +.+    .+ +.-++++ -| +.-.|.+. +++-++++-++| +++++++|.||+...+.=.|.-+. .-..+.|+    
T Consensus       210 ~~~~~~~~~~~iAAvi~-EPiqg~gG~~~p~~~yl~~lr~lc-~~~gillI~DEV~tGfGRtG~~fa~e~~gv~PD----  283 (454)
T PRK06918        210 NFFISEVAPETIAAVVM-EPVQGEGGFIVPSKKFVQEVRNIC-SEHGILFVADEIQTGFSRTGKYFAIDHYDVVPD----  283 (454)
T ss_pred             HHHHHHCCCCCEEEEEE-ECCCCCCCCCCCCHHHHHHHHHHH-HHCCCEEEEEECCCCCCCCCCCCHHHCCCCCCE----
T ss_conf             99986248886689999-688788898668989999999988-564916872011248761357402222798985----


Q ss_pred             EEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCHHHH
Q ss_conf             574146544322344544422110122687531001222332222222222223467--643222222110000000245
Q gi|254780602|r  231 TLVVNGVSKAYAMTGLRIGYAAGALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGP--QDFVVNNRKIFEYRRDLCVAQ  308 (400)
Q Consensus       231 ~i~~~S~SK~~~~~G~RiG~~v~~~~li~~l~~~~~~~~~~~~~~~q~a~~~~l~~~--~~~~~~~~~~~~~~r~~~~~~  308 (400)
                       |+  +++|..+ .|+-+|.+++.+++.+.........+++.+.+...++.+.|+.-  ++.+++.    ++.-+++.+.
T Consensus       284 -iv--~~gK~lg-~G~Plsav~~~~~i~~~~~~~~~~~Tf~gnpla~aaa~a~L~~i~~e~l~~~~----~~~G~~l~~~  355 (454)
T PRK06918        284 -LI--TVSKSLG-AGVPISGVIGRKEIMNEAAPGELGGTYAGSPLGCAAALAVLDIIEKENLNDRA----IELGKVVMNR  355 (454)
T ss_pred             -EE--EECCHHH-CCCCCCCEEECHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHH----HHHHHHHHHH
T ss_conf             -99--9772655-89987226521887604688671561798989999999999999866899999----9999999999


Q ss_pred             HH----CCCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCCCCEEEEE--EECCH
Q ss_conf             53----0477603302740899862641023321133224898999999998739799835022899728999--62999
Q gi|254780602|r  309 LQ----GVPGIRYMIPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGHGPSIRIS--YAVSD  382 (400)
Q Consensus       309 L~----~~~g~~~~~p~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~iRis--~~~~~  382 (400)
                      |+    +.+.+.-++..|-| +=+++-.......+.   .....+++..++ +.||++.++..  .++-+||.  +..++
T Consensus       356 L~~l~~~~p~v~~vRG~Gl~-~gvelv~d~~~~~p~---~~~~~~i~~~~~-~~Gll~~~~g~--~~~vlr~~PPL~it~  428 (454)
T PRK06918        356 FEEMKNKYNCIGDVRGLGAM-CAFELVQDRKTKEPD---KTLTANLCAEAN-KRGLLLLSAGT--YGNVIRVLMPLVITD  428 (454)
T ss_pred             HHHHHHCCCCEEEEECCCEE-EEEEEECCCCCCCCC---HHHHHHHHHHHH-HCCCEEEECCC--CCCEEEEECCCCCCH
T ss_conf             99998629986888226479-999995067668977---999999999999-68959984688--999899978822899


Q ss_pred             HHHHHHHHHHHHHHHHC
Q ss_conf             99999999999999860
Q gi|254780602|r  383 AILEEACVRIKRFCHSL  399 (400)
Q Consensus       383 e~l~~al~rl~~~l~~l  399 (400)
                      +++++++++|.+.|++.
T Consensus       429 ~eid~~l~~l~~al~a~  445 (454)
T PRK06918        429 EQLEEGLTIIEESLQAC  445 (454)
T ss_pred             HHHHHHHHHHHHHHHHH
T ss_conf             99999999999999999


No 258
>pfam00464 SHMT Serine hydroxymethyltransferase.
Probab=99.41  E-value=2.2e-12  Score=95.51  Aligned_cols=325  Identities=13%  Similarity=0.059  Sum_probs=183.3

Q ss_pred             HHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCC-CCCCC------CCCCHHHHHHHHHHHHHHCCCC
Q ss_conf             9999999999998699726656589749889999999999983887-56998------7789899999999864210133
Q gi|254780602|r   16 TLVAAQRVRDLRSKGIDVLCLTAGEPDFDMPENVKYAVVRAMERGE-TKYTA------VAGISPLREAIVEKFRRDNDLH   88 (400)
Q Consensus        16 ~~~~~~~~~~~~~~g~~ii~l~~G~p~~~~p~~i~~a~~~al~~~~-~~Y~~------~~G~~~lR~aia~~~~~~~g~~   88 (400)
                      ++.+.++-.+.++.+   |+|=..|. + +++.+++++...+.+.. -||+.      ..-..++-+...++.++.||.+
T Consensus         8 i~~~i~~E~~rq~~~---l~LIASEN-~-~S~~v~~a~gS~ltnkYaEG~pg~Ryy~G~e~iD~iE~la~~rak~lF~a~   82 (380)
T pfam00464         8 IFDIIKKEKERQREG---IELIASEN-F-TSRAVMEALGSVLTNKYAEGYPGKRYYGGCEYVDEVETLAQDRAKELFGLD   82 (380)
T ss_pred             HHHHHHHHHHHHHCC---CEEECCCC-C-CCHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC
T ss_conf             999999999999829---54753777-5-799999985573126465879984334676359999999999999983997


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---CCCCCCC--CCCCCCCCCCCCCCCCHHHHHHCCC-C
Q ss_conf             33223323345433332222222332232222333323222---2222222--2222222222232221033310001-2
Q gi|254780602|r   89 YTSDQIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYP---DMVALCG--GIPVFVDTQQDDNFQVSPEKLEQAI-T  162 (400)
Q Consensus        89 ~~~e~I~it~G~~~~l~~~~~~~~~~Gd~Vlv~~P~y~~y~---~~~~~~g--~~~~~v~~~~~~~~~~d~~~l~~~i-~  162 (400)
                        --||=.-+|+ +|...++.++++|||+|+..++.-..|.   ......|  .+.+++++++++ ..+|.|++++.. .
T Consensus        83 --~anVqp~SGs-~An~av~~all~PGD~il~l~l~~GGHltHg~~~~~~g~~~~~~~Y~~d~~~-~~ID~d~l~~~a~~  158 (380)
T pfam00464        83 --GVNVQPLSGS-QANLAVYTALLNPGDRIMGLDLPHGGHLTHGYPVNFSGKFFESMPYGVDPDT-GLIDYDQLEKNAKL  158 (380)
T ss_pred             --CCCCCCCCHH-HHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCEECCEEEEEECCCCCCC-CCCCHHHHHHHHHH
T ss_conf             --6351778769-9999999998379998995367777545679865620114677874346454-86689999999997


Q ss_pred             CCCCCEEECCCCCCCCCCCCCC-CCCCCCCCCCCCCCCEEECCCCCC-CCCCCCCCCCCCCCCCCCCCCEEEEECCCCCC
Q ss_conf             2122012113542100001233-332111223333320111012211-00000122332221112333225741465443
Q gi|254780602|r  163 PKTKWLFLNSPSNPSGVVYSQN-RLRALADVLVRNPHVHIISDDIYE-HIVYRNCQFSNIVNVEPSLYERTLVVNGVSKA  240 (400)
Q Consensus       163 ~~~k~i~l~nP~NPTG~v~s~~-~l~~i~~~~a~~~~i~ii~De~Y~-~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~  240 (400)
                      .|+|+|++-      ++.|++. +++++.++| ++.+.+++.|-+|- .|+-.+ .+++.....      -++.+|.-|+
T Consensus       159 ~kPklIi~G------~Say~r~~d~~~~reIa-d~vgA~l~~D~aH~~GLIA~g-~~p~Pl~~A------Dvvt~tTHKT  224 (380)
T pfam00464       159 FKPKLIVAG------TSAYSRLIDYARFREIA-DEVGAYLMVDMAHIAGLVAAG-VIPSPFPYA------HVVTTTTHKT  224 (380)
T ss_pred             CCCCEEEEC------CCCCCCCCCHHHHHHHH-HHCCCEEEEEHHHHHHHHHCC-CCCCCCCCC------EEEECCCCCC
T ss_conf             099889987------40043644889999999-750988998637777777424-379954666------5785354566


Q ss_pred             CCCCCCCCCCCCCHH---HHHHHHHHHCCCCCCCCCCCCCCCCC-CCCCC-CCCCCCCCCCCCCCCCCCHHHHHHCCCCC
Q ss_conf             223445444221101---22687531001222332222222222-22346-76432222221100000002455304776
Q gi|254780602|r  241 YAMTGLRIGYAAGAL---SLIKSMIVLQGQQTSGACSIAQWAAV-EALNG-PQDFVVNNRKIFEYRRDLCVAQLQGVPGI  315 (400)
Q Consensus       241 ~~~~G~RiG~~v~~~---~li~~l~~~~~~~~~~~~~~~q~a~~-~~l~~-~~~~~~~~~~~~~~~r~~~~~~L~~~~g~  315 (400)
                      |  +|-|-|.+..++   ++.+++.+..--...+.+...+.++. .+|.+ ....+.+-.+..-+|.+.+.+.|.+. |+
T Consensus       225 l--rGPrGGiIl~~~~~~e~~~kId~avFPg~qggp~~h~iAa~Aval~Ea~~~~f~~Ya~qVv~NAk~La~~L~~~-G~  301 (380)
T pfam00464       225 L--RGPRGGMIFFREILYELEKKINSAVFPGLQGGPLNHVIAAKAVALKQALTPEFKVYQQQVLKNAKALAEALKER-GY  301 (380)
T ss_pred             C--CCCCCEEEEECCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHC-CC
T ss_conf             7--89985179837837999999714048876677006579999999999848529999999999999999999978-88


Q ss_pred             EEEECCC--CEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCC-CCC-----CCCEEEEEE
Q ss_conf             0330274--08998626410233211332248989999999987397998350-228-----997289996
Q gi|254780602|r  316 RYMIPDG--AFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGS-SFG-----HGPSIRISY  378 (400)
Q Consensus       316 ~~~~p~g--~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~-~Fg-----~~~~iRis~  378 (400)
                      ++.. .|  +-.+|+|+...          ..+..+ +..+|++.||.+..-. .|.     .+..|||.-
T Consensus       302 ~vv~-ggTd~H~vlvdl~~~----------g~~G~~-a~~~Le~~gI~~Nkn~iP~d~~~~~~~sGiRiGt  360 (380)
T pfam00464       302 KLVS-GGTDNHLVLVDLRPK----------GLDGKR-AEKALERANITANKNTIPGDPKSPFVTSGLRLGT  360 (380)
T ss_pred             EECC-CCCCCCEEEEECCCC----------CCCHHH-HHHHHHHCCEEECCCCCCCCCCCCCCCCCCEECC
T ss_conf             3577-999876899977666----------999999-9999997692878885989999998888426577


No 259
>PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional
Probab=99.41  E-value=5.7e-12  Score=92.97  Aligned_cols=352  Identities=14%  Similarity=0.111  Sum_probs=173.1

Q ss_pred             CCCCEEECCCCCC--CCC-CCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCC-CCCC-CCCCCCCC
Q ss_conf             6997266565897--498-89999999999983887569987789899999999864210133332-2332-33454333
Q gi|254780602|r   29 KGIDVLCLTAGEP--DFD-MPENVKYAVVRAMERGETKYTAVAGISPLREAIVEKFRRDNDLHYTS-DQII-VGTGAKHV  103 (400)
Q Consensus        29 ~g~~ii~l~~G~p--~~~-~p~~i~~a~~~al~~~~~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~-e~I~-it~G~~~~  103 (400)
                      +|++.||+..|--  .+. -.|.|.+|+++.+++... +....-..+.+..+++.+.....-.+.. ..|. .++++++|
T Consensus        61 dG~~yLD~~sg~~~~~lGh~~p~i~~Ai~~ql~~~~~-~~~~~~~~~~~~~la~~L~~~~p~~~~~~~~v~f~~~SGSEA  139 (464)
T PRK06938         61 EGRQFIDCLAGAGTLALGHNHPVVIEAIQQVLADELP-LHTLDLTTPVKDQFVQDLFGSLPEAFAKEAKIQFCGPTGTDA  139 (464)
T ss_pred             CCCEEEEECHHHHHHHHCCCCHHHHHHHHHHHHHCCC-EEECCCCCHHHHHHHHHHHHHCCHHHHCCCEEEEECCCCHHH
T ss_conf             8899999164088656707959999999999860898-126785868999999999996205553044089847980899


Q ss_pred             CCCCCCCCC-CCC-CCCCCCCCCCCCCCCC-CCCCC--------------CCCCCCCC--------CCCCCCCCHHHHHH
Q ss_conf             322222223-322-3222233332322222-22222--------------22222222--------22232221033310
Q gi|254780602|r  104 IFNALMATV-NMG-DEVLIPRPYWVSYPDM-VALCG--------------GIPVFVDT--------QQDDNFQVSPEKLE  158 (400)
Q Consensus       104 l~~~~~~~~-~~G-d~Vlv~~P~y~~y~~~-~~~~g--------------~~~~~v~~--------~~~~~~~~d~~~l~  158 (400)
                      +..+++..- ..| ..|+...-+|-..... ....|              ...+++|.        ..+.....+.+.++
T Consensus       140 vE~AiKlAR~~tgr~~Iis~~~~YHG~T~gals~tg~~~~~~~~~~~~~~~~~~p~p~~~r~p~~~~~~~~~~~~~~~le  219 (464)
T PRK06938        140 VEAALKLVKTATGRSTVLSFQGGYHGMSQGALSLMGNLGPKKPLGALLPGVQFLPYPYDYRCPFGLGGEAGVRANLHYLE  219 (464)
T ss_pred             HHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf             99999998646798859998347889706556541787555567888999678168864467667761567888899999


Q ss_pred             CCCCC------CCCCEEECCC-CCCCCCCC-CCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCC-CCCCCCCCCC
Q ss_conf             00122------1220121135-42100001-23333211122333332011101221100000122332-2211123332
Q gi|254780602|r  159 QAITP------KTKWLFLNSP-SNPSGVVY-SQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSN-IVNVEPSLYE  229 (400)
Q Consensus       159 ~~i~~------~~k~i~l~nP-~NPTG~v~-s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s-~~~~~~~~~~  229 (400)
                      +.+..      ++-++++ -| +.-.|.+. +++-+++|-++| ++||+++|.||+...|.=.|.-+.. -..+.|+   
T Consensus       220 ~~i~~~~~g~~~iAAvi~-EpIqg~gGvi~~p~~yl~~lr~lc-~~~giLlI~DEVqtGfGRTG~~fa~e~~gv~PD---  294 (464)
T PRK06938        220 NLLDDPESGVQLPAAVIL-EVVQGEGGVIPADDEWLRGLRRIT-EEAGIPLIVDEIQSGFGRTGKMFAFEHAGIIPD---  294 (464)
T ss_pred             HHHHHHHCCCCCEEEEEE-CCCCCCCCCCCCCHHHHHHHHHHH-HHCCCEEECCCCCCCCCCCCCCHHHHHCCCCCC---
T ss_conf             997405406882489998-885687798649989999999998-667915986420126774368406432368888---


Q ss_pred             EEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf             25741465443223445444221101226875310012223322222222222234676432222221100000002455
Q gi|254780602|r  230 RTLVVNGVSKAYAMTGLRIGYAAGALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQL  309 (400)
Q Consensus       230 ~~i~~~S~SK~~~~~G~RiG~~v~~~~li~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~~~~~L  309 (400)
                        |+  +++|..+ .|+-+|.++..+++ +.........+.+.+.+...++.+.|+.-++  +...+..++.-+++.+.|
T Consensus       295 --ii--t~gKglg-Gg~Plsavi~~~~i-~~~~~g~h~~T~~gnpla~AaalavL~iie~--e~l~~~a~~~G~~l~~~L  366 (464)
T PRK06938        295 --VV--VLSKAIG-GSLPLAVVVYREWL-DTWQPGAHAGTFRGNQMAMAAGSATLRYIKE--HRLAEHAAAMGERLLEHL  366 (464)
T ss_pred             --EE--EECHHCC-CCCCEEEEEECHHH-HHCCCCCCCCCCCCCHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHH
T ss_conf             --79--8630004-87734999982776-5047887487289998999999999999986--449999999999999999


Q ss_pred             HC----CCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCC---HHHHHHHHHHHCCEEEECCCCCCCCCEEEEE--EEC
Q ss_conf             30----47760330274089986264102332113322489---8999999998739799835022899728999--629
Q gi|254780602|r  310 QG----VPGIRYMIPDGAFYLYPSCQDLIGKKSPSGDVIRT---DLDFVNGLLEIEKVAVVQGSSFGHGPSIRIS--YAV  380 (400)
Q Consensus       310 ~~----~~g~~~~~p~g~~y~~~~~~~~~~~~~~~~~~~~~---~~~~~~~Ll~~~gV~v~pG~~Fg~~~~iRis--~~~  380 (400)
                      ++    .|.+.=++.. |+++=+++-+.............+   ...+...++ +.|+++.++...  .+-||+.  +..
T Consensus       367 ~~l~~~~p~V~dVRG~-GLm~giElv~~~~~~d~~~~~p~~~~~~~~v~~~~l-~~Gll~~~~g~~--g~virl~PPL~i  442 (464)
T PRK06938        367 RQLQRDYPQLGDVRGR-GLMLGVEIVDPQGEPDALGHPPANGELASRIQRECL-RRGLILELGGRH--GSVVRFLPPLII  442 (464)
T ss_pred             HHHHHCCCCEEEEECC-CEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHH-HCCCEEEECCCC--CCEEEEECCCCC
T ss_conf             9998539987976416-069999984166664433356555899999999999-789289646889--998999799128


Q ss_pred             CHHHHHHHHHHHHHHHHH
Q ss_conf             999999999999999986
Q gi|254780602|r  381 SDAILEEACVRIKRFCHS  398 (400)
Q Consensus       381 ~~e~l~~al~rl~~~l~~  398 (400)
                      +++++++++++|++.|+.
T Consensus       443 t~eeid~~~~~l~~al~~  460 (464)
T PRK06938        443 TAEQIDEVAEIFAEAVYA  460 (464)
T ss_pred             CHHHHHHHHHHHHHHHHH
T ss_conf             899999999999999999


No 260
>pfam01276 OKR_DC_1 Orn/Lys/Arg decarboxylase, major domain.
Probab=99.41  E-value=3.1e-14  Score=106.76  Aligned_cols=168  Identities=17%  Similarity=0.241  Sum_probs=106.6

Q ss_pred             CHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             98999999998642101333322332334543333222222233223222233332322222222222222222222232
Q gi|254780602|r   70 ISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDMVALCGGIPVFVDTQQDDN  149 (400)
Q Consensus        70 ~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l~~~~~~~~~~Gd~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~~~~  149 (400)
                      ..+..+..|+.|    |.+   .-.+++||++.++..++.++|+|||+|+++.-+--.....+.+.|++|+++... .+.
T Consensus        68 I~eAq~~aA~~f----ga~---~t~flvnGsT~g~~a~i~a~~~~Gd~Vlv~RN~HkSv~~al~l~g~~Pvyl~p~-~~~  139 (417)
T pfam01276        68 IKEAQKYAARVF----GAD---KSYFVVNGTSGANKTVGMAVCTPGDTVLIDRNCHKSIHHALMMSGATPVYLEPT-RNA  139 (417)
T ss_pred             HHHHHHHHHHHH----CCC---CEEEEECCCCHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHCCCEEEEECCC-CCC
T ss_conf             999999999983----999---369984683099999999743899989971641899999999869858995364-243


Q ss_pred             CC---------CHHHHHHCCCCCC--CC---CEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCC-CCCCCC
Q ss_conf             22---------1033310001221--22---012113542100001233332111223333320111012211-000001
Q gi|254780602|r  150 FQ---------VSPEKLEQAITPK--TK---WLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYE-HIVYRN  214 (400)
Q Consensus       150 ~~---------~d~~~l~~~i~~~--~k---~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~-~l~~~~  214 (400)
                      |.         ++++.+++++.+.  .|   +++|+|| |=-|.+++   +++|++.| +++++.|++||||. ++.|..
T Consensus       140 ~gi~~~i~~~~~~~e~~~~~l~~~p~~k~~~~v~lt~P-tY~G~~~d---i~~i~~~~-h~~~~~llvDEAhGah~~F~p  214 (417)
T pfam01276       140 YGIIGGIPLHEFQEETIKEALAEVPPAKGPRLAVITNG-TYDGTIYN---AKEIVDTL-GHLSDYILFDSAWVGYEQFIP  214 (417)
T ss_pred             CCCCCCCCHHHCCHHHHHHHHHHCCCCCCCEEEEEECC-CCCEEEEC---HHHHHHHH-HHCCCEEEEECCCCCCCCCCC
T ss_conf             46615888254599999999985876568508999899-98706528---99999998-633987999788752024687


Q ss_pred             CCCCCCCCCCCC--CCCEEEEECCCCCCCCCCCCCCC-CCCC
Q ss_conf             223322211123--33225741465443223445444-2211
Q gi|254780602|r  215 CQFSNIVNVEPS--LYERTLVVNGVSKAYAMTGLRIG-YAAG  253 (400)
Q Consensus       215 ~~~~s~~~~~~~--~~~~~i~~~S~SK~~~~~G~RiG-~~v~  253 (400)
                      - +.+......+  ...-++++.|.-|+.  |++.-+ |+..
T Consensus       215 l-p~~a~~~gad~~~~~~~~vvqS~HKtL--~altQ~s~Lh~  253 (417)
T pfam01276       215 I-YADASPMGGDNVNDPGIIVTQSVHKLL--AAFSQASQIHK  253 (417)
T ss_pred             C-CHHHHHCCCCCCCCCCEEEEEEHHHCC--CCCCHHHHHHH
T ss_conf             8-334665678866677227986111135--43043432121


No 261
>TIGR01328 met_gam_lyase methionine gamma-lyase; InterPro: IPR006237   This family of sequences is a methionine gamma-lyase subset of a family of PLP-dependent trans-sulphuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine..
Probab=99.40  E-value=2.5e-13  Score=101.21  Aligned_cols=202  Identities=18%  Similarity=0.288  Sum_probs=139.5

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----CCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCC
Q ss_conf             223323345433332222222332232222333323222----2222222222222222223222103331000122122
Q gi|254780602|r   91 SDQIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYP----DMVALCGGIPVFVDTQQDDNFQVSPEKLEQAITPKTK  166 (400)
Q Consensus        91 ~e~I~it~G~~~~l~~~~~~~~~~Gd~Vlv~~P~y~~y~----~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~k  166 (400)
                      .|--+-|..+..||..++..++..||+||+.+--|.+-.    ...+.+|.++.+++++       .++++.+.+.++||
T Consensus        74 ~EAavAt~SGMgAi~A~l~~~lkAgDh~i~d~~lYGCTfall~~~ltkfgi~v~f~~~~-------~pee~~a~i~dnT~  146 (392)
T TIGR01328        74 AEAAVATASGMGAIAATLLSLLKAGDHVISDETLYGCTFALLEDALTKFGIDVKFVDMA-------SPEEVKAAIKDNTK  146 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHCCEEEEECCC-------CHHHHHHHCCCCCE
T ss_conf             46778875128999999999985287577438742014899873267737527983178-------77999984489977


Q ss_pred             CEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCC-
Q ss_conf             0121135421000012333321112233333201110122110000012233222111233322574146544322344-
Q gi|254780602|r  167 WLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTG-  245 (400)
Q Consensus       167 ~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~~~G-  245 (400)
                      .||+-+|-|||=.+++-+   .+++++..+.++.||+|..|.-=+.     +....+     ..-|+++|.+|..+-=| 
T Consensus       147 ivYfETPaNPtm~liD~e---~v~r~A~~~gG~kVivDNTfatP~l-----t~P~al-----G~D~VVHSATKYigGHgD  213 (392)
T TIGR01328       147 IVYFETPANPTMKLIDLE---LVVRVAHEKGGVKVIVDNTFATPYL-----TRPVAL-----GVDVVVHSATKYIGGHGD  213 (392)
T ss_pred             EEEEECCCCCCHHHHHHH---HHHHHHHHCCCEEEEEECCCCCHHH-----CCHHHC-----CCCEEEECCCCCCCCCHH
T ss_conf             999865998752577599---9999997529828998566277001-----380361-----877689424121376122


Q ss_pred             CCCCCCCCHHHHHHHHHHH--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCE
Q ss_conf             5444221101226875310--0122233222222222222346764322222211000000024553047760
Q gi|254780602|r  246 LRIGYAAGALSLIKSMIVL--QGQQTSGACSIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQGVPGIR  316 (400)
Q Consensus       246 ~RiG~~v~~~~li~~l~~~--~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~~~~~L~~~~g~~  316 (400)
                      +=-|.+++..+.+.+++..  ++.+.+-.|++..+..++.|..    +.-.-++--++.+.+.+.|++.|.++
T Consensus       214 vVaG~~~G~~e~~q~iR~~g~KD~tG~ViSPfdAwL~lRGLkT----L~~RM~rhsenA~kvAe~Lk~HPaVe  282 (392)
T TIGR01328       214 VVAGVLIGDAELLQRIRLVGVKDMTGAVISPFDAWLVLRGLKT----LAVRMKRHSENAEKVAEYLKEHPAVE  282 (392)
T ss_pred             HHHHHHCCCHHHHHHHCCCCCCCCCCCEECHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf             1122110775667440111100056650055789999743667----77888773053899999852388602


No 262
>PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional
Probab=99.40  E-value=1.4e-11  Score=90.58  Aligned_cols=322  Identities=16%  Similarity=0.162  Sum_probs=176.5

Q ss_pred             CCCCEEECCCCCC--CCC-CCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             6997266565897--498-8999999999998388756998778989999999986421013333223323345433332
Q gi|254780602|r   29 KGIDVLCLTAGEP--DFD-MPENVKYAVVRAMERGETKYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIF  105 (400)
Q Consensus        29 ~g~~ii~l~~G~p--~~~-~p~~i~~a~~~al~~~~~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l~  105 (400)
                      .|++.||+..|.-  .+. -+|.|.+|+.+.+++.. .+.+...+ +.+..+++.+.+..    +-+.|.+++++++|..
T Consensus        22 dG~~ylD~~~g~~~~~lGh~~p~i~~ai~~ql~~~~-~~~~~~~~-~~~~~l~~~l~~~~----~~~~v~f~~SGseAve   95 (364)
T PRK04013         22 QGRRYLDLIAGIGVNVLGHNHPEWVEEMSEQLEKLV-VAGPMFEH-EEKEEMLEELSKWV----NYEYVYMGNSGTEAVE   95 (364)
T ss_pred             CCCEEEECCHHHHHHHHCCCCHHHHHHHHHHHHHCC-CCCCCCCC-HHHHHHHHHHHHCC----CCCEEEECCCHHHHHH
T ss_conf             979999957527765654898899999999997557-65776365-89999999975257----9788996388469999


Q ss_pred             CCCCCC-CCCC-CCCCCCCCCCCCCCCCC-CCCCCC---CCCCCCCCCCCC--CCHHHHHHCCCCCCCCCEEECCC-CCC
Q ss_conf             222222-3322-32222333323222222-222222---222222222322--21033310001221220121135-421
Q gi|254780602|r  106 NALMAT-VNMG-DEVLIPRPYWVSYPDMV-ALCGGI---PVFVDTQQDDNF--QVSPEKLEQAITPKTKWLFLNSP-SNP  176 (400)
Q Consensus       106 ~~~~~~-~~~G-d~Vlv~~P~y~~y~~~~-~~~g~~---~~~v~~~~~~~~--~~d~~~l~~~i~~~~k~i~l~nP-~NP  176 (400)
                      .+++.- ...| .+|+...-+|-...... ...+..   ..+-|+.++-..  ..|.+++++.+..++.++++ -| +.-
T Consensus        96 ~AiklAr~~tgr~~ii~~~~~yHG~t~g~ls~~~~~~~~~~~~~~~~~~~~~p~~d~~~~~~~~~~~iAavi~-EPi~g~  174 (364)
T PRK04013         96 AALKFARLYTGRKEIIAMTNAFHGRTMGALSATWKPKYREDFEPLVPGFKHIPFNDVEAAKEAITKETAAVIF-EPIQGE  174 (364)
T ss_pred             HHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHCCCCEEEEE-ECCCCC
T ss_conf             9999987627999899964886778666334457733345778998870555764399999872667359999-767778


Q ss_pred             CCCCC-CCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC-CCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCH
Q ss_conf             00001-2333321112233333201110122110000012233-222111233322574146544322344544422110
Q gi|254780602|r  177 SGVVY-SQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFS-NIVNVEPSLYERTLVVNGVSKAYAMTGLRIGYAAGA  254 (400)
Q Consensus       177 TG~v~-s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~-s~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~v~~  254 (400)
                      .|.+. +++-++++-++| +++|+++|.||+...+. .|.-+. ....+.|+     |++  ++|.++ .|+.+|.++++
T Consensus       175 ~G~~~~~~~yl~~lr~lc-~~~gillI~DEV~tGfR-tG~~~a~e~~gv~PD-----iv~--~gKglg-gG~Pl~av~~~  244 (364)
T PRK04013        175 GGIVPAKEEFVKTLRDLT-EDVGALLIADEVQSGLR-TGKFLAIEHYKVEPD-----IVT--MGKGIG-NGVPVSLTLTN  244 (364)
T ss_pred             CCCCCCCHHHHHHHHHHH-HHCCCCEECCCCCCCCC-CCCCCHHHCCCCCCC-----EEE--ECCCCC-CCCCCEEEEEC
T ss_conf             886248779999999999-97699767102303604-343023115899998-----999--634000-88651899964


Q ss_pred             HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEECCCCEEEEEECCC
Q ss_conf             122687531001222332222222222223467--643222222110000000245530477603302740899862641
Q gi|254780602|r  255 LSLIKSMIVLQGQQTSGACSIAQWAAVEALNGP--QDFVVNNRKIFEYRRDLCVAQLQGVPGIRYMIPDGAFYLYPSCQD  332 (400)
Q Consensus       255 ~~li~~l~~~~~~~~~~~~~~~q~a~~~~l~~~--~~~~~~~~~~~~~~r~~~~~~L~~~~g~~~~~p~g~~y~~~~~~~  332 (400)
                      .++...   .+. .+.+.+.+...++.+.|+--  +..+++.       ++.+.+ ++. +.+.-.+.. |+++=+++..
T Consensus       245 ~~i~~~---~h~-~T~~Gnp~~~aaa~a~L~ii~~e~l~~~~-------~~~~~~-~~~-~~v~~vRG~-GL~~gie~~~  310 (364)
T PRK04013        245 FDVERG---KHG-STFGGNPLACKAVAVTLRILRRERLVEKA-------GEKFIE-IKG-ERVVTTRGR-GLMIGIVLKK  310 (364)
T ss_pred             CCCCCC---CCC-CCCCCCHHHHHHHHHHHHHHHHCHHHHHH-------HHHHHH-HCC-CCEEEEECC-CEEEEEEECC
T ss_conf             101137---656-75588989999999999999866399999-------999998-565-700898615-3799999778


Q ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCCCCEEEEE--EECCHHHHHHHHHHHHHHHHHC
Q ss_conf             023321133224898999999998739799835022899728999--6299999999999999999860
Q gi|254780602|r  333 LIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGHGPSIRIS--YAVSDAILEEACVRIKRFCHSL  399 (400)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~iRis--~~~~~e~l~~al~rl~~~l~~l  399 (400)
                                   ....++..+ .+.|+++.++.    ++-||+.  +..+++++++++++|.+.++.+
T Consensus       311 -------------p~~~~~~~~-~~~G~l~~~~g----~~virl~PPL~it~~eid~~~~~l~~al~ev  361 (364)
T PRK04013        311 -------------PVGKYVEEL-QNRGYLVHTAG----QRVIRLLPPLIISKDTMEEAKSAIEGVINDI  361 (364)
T ss_pred             -------------CHHHHHHHH-HHCCEEEEECC----CCEEEEECCEECCHHHHHHHHHHHHHHHHHH
T ss_conf             -------------489999999-95996996379----9989998881378999999999999999998


No 263
>PRK05769 4-aminobutyrate aminotransferase; Provisional
Probab=99.39  E-value=3.5e-12  Score=94.23  Aligned_cols=344  Identities=14%  Similarity=0.131  Sum_probs=176.0

Q ss_pred             CCCCEEECCCCC--CCCC-CCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             699726656589--7498-8999999999998388756998778989999999986421013333223323345433332
Q gi|254780602|r   29 KGIDVLCLTAGE--PDFD-MPENVKYAVVRAMERGETKYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIF  105 (400)
Q Consensus        29 ~g~~ii~l~~G~--p~~~-~p~~i~~a~~~al~~~~~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l~  105 (400)
                      .|+..||+..|.  ..+. -+|.|.+|+++.++... .|+.+.-.-+.+.++|+.+.+....+. ...|++++++++|..
T Consensus        53 dG~~ylD~~~g~~~~~lGh~~p~i~~Av~~Q~~~l~-~~~~~~~~~~~~~elae~L~~~~p~~~-~~~v~f~~sGSEAvE  130 (442)
T PRK05769         53 DGNVYLDFNSGIAVTNVGHAHPKVVEAIKEQAEKFL-HYSLTDFYYEPAVELAERLVEIAPGGF-PKKVFFTNSGTESNE  130 (442)
T ss_pred             CCCEEEEECCCHHHHHHCCCCHHHHHHHHHHHHHCC-CCCCCCCCCHHHHHHHHHHHHHCCCCC-CCEEEEECCHHHHHH
T ss_conf             869999925447741344897999999999986176-745677688899999999998578666-757998186778999


Q ss_pred             CCCCCCC-CCC-CCCCCCCCCCCCCCC-CCCCCC---------------CCCCCCCCCCCCCC---------CCHHHHHH
Q ss_conf             2222223-322-322223333232222-222222---------------22222222222322---------21033310
Q gi|254780602|r  106 NALMATV-NMG-DEVLIPRPYWVSYPD-MVALCG---------------GIPVFVDTQQDDNF---------QVSPEKLE  158 (400)
Q Consensus       106 ~~~~~~~-~~G-d~Vlv~~P~y~~y~~-~~~~~g---------------~~~~~v~~~~~~~~---------~~d~~~l~  158 (400)
                      .++...- ..| ..|+...-+|-.... .....|               ...+++|......|         .-.++.++
T Consensus       131 ~AiklAr~~tgr~~ii~~~~syHG~t~ga~s~t~~~~~~~~~~~p~~p~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~le  210 (442)
T PRK05769        131 AAIKLARYYTGRKYIIAFLGAFHGRTYGSMSLTASKPVQRRGFFPLMPGVIHVPYPNPYRNPFGYENPEELGNAVLDFIE  210 (442)
T ss_pred             HHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHCCCCHHHCCCCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf             99999898659986997248677886336532078301104778999992780789734565577898999999999999


Q ss_pred             CCC-----CC-CCCCEEECCC-CCCCCC-CCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC-CCCCCCCCCCC
Q ss_conf             001-----22-1220121135-421000-012333321112233333201110122110000012233-22211123332
Q gi|254780602|r  159 QAI-----TP-KTKWLFLNSP-SNPSGV-VYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFS-NIVNVEPSLYE  229 (400)
Q Consensus       159 ~~i-----~~-~~k~i~l~nP-~NPTG~-v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~-s~~~~~~~~~~  229 (400)
                      +.+     .+ +..++++ -| +--.|. +.+++-++++.++| +++|+++|.||+...+.-.|.-+. .-..+.|+   
T Consensus       211 ~~i~~~~~~~~~iAavi~-EPv~g~gG~~~p~~~yl~~l~~lc-~~~gillI~DEV~tGfGRtG~~fa~e~~gv~PD---  285 (442)
T PRK05769        211 DYLFKTLVPPEEVAAIFF-EPIQGEGGYVVPPKNFFKELRKLA-DKYGILLIVDEVQTGFGRTGKMFAIEHFGVEPD---  285 (442)
T ss_pred             HHHHHHCCCCCCEEEEEE-ECCCCCCCCCCCCHHHHHHHHHHH-HHCCCEEECCCCCCCCCCCCCCCHHHCCCCCCC---
T ss_conf             999873589897899999-897778897068989998999999-874935871110127775566213104677888---


Q ss_pred             EEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf             25741465443223445444221101226875310012223322222222222234676432222221100000002455
Q gi|254780602|r  230 RTLVVNGVSKAYAMTGLRIGYAAGALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQL  309 (400)
Q Consensus       230 ~~i~~~S~SK~~~~~G~RiG~~v~~~~li~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~~~~~L  309 (400)
                        |+  +++|..+ .|+-+|.+++.+++.....-.+. .+.+.+.+...++.+.|+--++   +..+..+++-+++.+.|
T Consensus       286 --iv--~~gK~lg-gG~Plsav~~~~~i~~~~~g~h~-~T~~g~pl~~aaa~a~L~~lee---~l~~~v~~~G~~l~~~L  356 (442)
T PRK05769        286 --II--TLAKAIA-GGLPLGAVIGRAELMFLPPGSHA-NTFGGNPVAAAAALATLELIEE---GLLENAARLGEYLLKRL  356 (442)
T ss_pred             --EE--EECCHHC-CCCCEEEEEECHHHHCCCCCCCC-CCCCCCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_conf             --89--9740103-88740899980675037778715-1899867999999999999988---89999999999999999


Q ss_pred             HCC----CCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCCCCEEEEE--EECCHH
Q ss_conf             304----77603302740899862641023321133224898999999998739799835022899728999--629999
Q gi|254780602|r  310 QGV----PGIRYMIPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGHGPSIRIS--YAVSDA  383 (400)
Q Consensus       310 ~~~----~g~~~~~p~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~iRis--~~~~~e  383 (400)
                      +++    +-+.-.+..| +++=+++-+...  .+.   .....+++..++ +.||++.|..    .+.||++  +..+++
T Consensus       357 ~~l~~~~p~v~~vRG~G-l~~giel~~~~~--~~~---~~~~~~~~~~~~-~~Gvl~~~~g----~~~i~~~PpL~it~~  425 (442)
T PRK05769        357 TELKEEYEFIGDVRGLG-LMIGVELVKDRK--EPD---PKLRDKVLREAF-KRGLLLLGAG----KSAIRIIPPLVITEE  425 (442)
T ss_pred             HHHHHHCCCEEEECCCC-EEEEEEEECCCC--CCC---HHHHHHHHHHHH-HCCEEEEECC----CCEEEEECCCCCCHH
T ss_conf             99986299867603434-599999815777--879---999999999999-6995993179----997999799469999


Q ss_pred             HHHHHHHHHHHHHHHC
Q ss_conf             9999999999999860
Q gi|254780602|r  384 ILEEACVRIKRFCHSL  399 (400)
Q Consensus       384 ~l~~al~rl~~~l~~l  399 (400)
                      ++++++++|.+.++++
T Consensus       426 eid~~~~~l~~al~ev  441 (442)
T PRK05769        426 EADTGLEILEEAIKEV  441 (442)
T ss_pred             HHHHHHHHHHHHHHHH
T ss_conf             9999999999999986


No 264
>PRK06062 hypothetical protein; Provisional
Probab=99.39  E-value=8.4e-12  Score=91.94  Aligned_cols=347  Identities=15%  Similarity=0.144  Sum_probs=178.9

Q ss_pred             CCCCEEECCCCCC--CCC-CCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             6997266565897--498-8999999999998388756998778989999999986421013333223323345433332
Q gi|254780602|r   29 KGIDVLCLTAGEP--DFD-MPENVKYAVVRAMERGETKYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIF  105 (400)
Q Consensus        29 ~g~~ii~l~~G~p--~~~-~p~~i~~a~~~al~~~~~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l~  105 (400)
                      .|+..||+..|--  .+. -+|.|.+|+++.++... .+.+.- ..+.+..+++.+.+...  -.-+++.++++++++..
T Consensus        34 dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~~~-~~~~~~-~~~~~~~la~~l~~~~p--~~~~~v~f~~SGsEAve  109 (434)
T PRK06062         34 EGNRYLDFSSQLVNTNIGHQHPKVVAAIQEQAARLC-TVAPAH-ANDARSEAARLIAERAP--GDLSKVFFTNGGADANE  109 (434)
T ss_pred             CCCEEEEECHHHHHHHHCCCCHHHHHHHHHHHHHCC-CCCCCC-CCHHHHHHHHHHHHHCC--CCCCEEEEECCCHHHHH
T ss_conf             789999860617867656897999999999997547-646752-45999999999997477--77587998378438999


Q ss_pred             CCCCCC-CCCC-CCCCCCCCCCCCCCCCC-CCCC-------------CCCCCCCCCCCCCC---------CCHHHHHHCC
Q ss_conf             222222-3322-32222333323222222-2222-------------22222222222322---------2103331000
Q gi|254780602|r  106 NALMAT-VNMG-DEVLIPRPYWVSYPDMV-ALCG-------------GIPVFVDTQQDDNF---------QVSPEKLEQA  160 (400)
Q Consensus       106 ~~~~~~-~~~G-d~Vlv~~P~y~~y~~~~-~~~g-------------~~~~~v~~~~~~~~---------~~d~~~l~~~  160 (400)
                      .+++.- ...| ..|+...-+|-.....+ ...|             ....+.|......|         .-.++.+++.
T Consensus       110 ~AlklAr~~tgr~~ii~~~~~yHG~t~~a~s~tg~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~l~~~  189 (434)
T PRK06062        110 HAVRMARLHTGRPKVLSAYRSYHGGTGTAINLTGDPRRWPNDTGNAGVVHFFGPFLYRSSFHATTEEEECERALAHLERV  189 (434)
T ss_pred             HHHHHHHHHCCCCCEEEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf             99999998529983766404667886520784068201468888899534158876676677888689999999999999


Q ss_pred             CC----CCCCCEEECCC-CCCCCCCC-CCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC-CCCCCCCCCCCEEEE
Q ss_conf             12----21220121135-42100001-2333321112233333201110122110000012233-222111233322574
Q gi|254780602|r  161 IT----PKTKWLFLNSP-SNPSGVVY-SQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFS-NIVNVEPSLYERTLV  233 (400)
Q Consensus       161 i~----~~~k~i~l~nP-~NPTG~v~-s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~-s~~~~~~~~~~~~i~  233 (400)
                      +.    .++-+|++ -| +.-.|.+. +++.++++.++| +++|+++|.||+...+.=.|.-+. .-..+.|+     |+
T Consensus       190 i~~~~~~~iAAviv-EPiqg~gG~~~~~~~yl~~lr~lc-~~~gillI~DEV~TG~GRtG~~fa~e~~gv~PD-----iv  262 (434)
T PRK06062        190 IALEGPSTIAAIVL-ESVPGTAGIMVPPPGYLAGVRELC-DRHGIVFIADEVMAGFGRTGKWFAIEHFDVVPD-----LI  262 (434)
T ss_pred             HHHCCCCCEEEEEE-CCCCCCCCCCCCCHHHHHHHHHHH-HHCCCCEECCCCCCCCCCCCCCCCCCCCCCCCC-----HH
T ss_conf             98519997799994-786788998668767876899999-985950674643227876666421005897976-----21


Q ss_pred             ECCCCCCCCCCC-CCCCCCCCHHHHHHHHHHH--CCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCHHHH
Q ss_conf             146544322344-5444221101226875310--01222332222222222223467--643222222110000000245
Q gi|254780602|r  234 VNGVSKAYAMTG-LRIGYAAGALSLIKSMIVL--QGQQTSGACSIAQWAAVEALNGP--QDFVVNNRKIFEYRRDLCVAQ  308 (400)
Q Consensus       234 ~~S~SK~~~~~G-~RiG~~v~~~~li~~l~~~--~~~~~~~~~~~~q~a~~~~l~~~--~~~~~~~~~~~~~~r~~~~~~  308 (400)
                        .++|..+ .| .-+|.+++.+++.+.+..-  ....+.+.+.+...++.+.|+.-  ++.+++.++.-   .+++.+.
T Consensus       263 --~~gK~l~-gG~~Plsav~~~~~i~~~~~~~~~~~g~T~~Gnpla~Aaa~a~L~~i~~~~l~~~~~~~G---~~~l~~~  336 (434)
T PRK06062        263 --TFAKGVN-SGYVPLGGVAISEAIADTFADRPYPGGLTYSGHPLACAAAVATINAMEEEGIVENAARIG---AEVLGPG  336 (434)
T ss_pred             --EEHHHHC-CCCCCEEEEEECHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHH---HHHHHHH
T ss_conf             --0103314-887761788745999987422675678788898799999999999997358999999999---9999999


Q ss_pred             HHC----CCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCH---HHHHHHHHHHCCEEEECCCCCCCCCEEEEE--EE
Q ss_conf             530----477603302740899862641023321133224898---999999998739799835022899728999--62
Q gi|254780602|r  309 LQG----VPGIRYMIPDGAFYLYPSCQDLIGKKSPSGDVIRTD---LDFVNGLLEIEKVAVVQGSSFGHGPSIRIS--YA  379 (400)
Q Consensus       309 L~~----~~g~~~~~p~g~~y~~~~~~~~~~~~~~~~~~~~~~---~~~~~~Ll~~~gV~v~pG~~Fg~~~~iRis--~~  379 (400)
                      |++    .|-+.-++..|-| +=+++-+......+........   ..+... +.++||++.+.     .+.||+.  +.
T Consensus       337 L~~l~~~~p~v~~VRG~GL~-~gielv~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~Gll~~~~-----gn~irl~PpL~  409 (434)
T PRK06062        337 LRELAERHPSVGEVRGLGVF-WALELVADRETREPLVPYGAASAAMAAVVAA-CKERGLLPFVN-----GNRIHVVPPCT  409 (434)
T ss_pred             HHHHHHHCCCEEEEEECCEE-EEEEEECCCCCCCCCCCCCCCHHHHHHHHHH-HHHCCCEEEEC-----CCEEEEECCCC
T ss_conf             99998658986888616626-9999822644355555443327999999999-99799278335-----99899978923


Q ss_pred             CCHHHHHHHHHHHHHHHHHC
Q ss_conf             99999999999999999860
Q gi|254780602|r  380 VSDAILEEACVRIKRFCHSL  399 (400)
Q Consensus       380 ~~~e~l~~al~rl~~~l~~l  399 (400)
                      .+++++++++++|++.|..+
T Consensus       410 it~~eid~~l~~l~~al~~~  429 (434)
T PRK06062        410 VTEDEVREGLAILDAALAVA  429 (434)
T ss_pred             CCHHHHHHHHHHHHHHHHHH
T ss_conf             88999999999999999987


No 265
>cd06450 DOPA_deC_like DOPA decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.
Probab=99.39  E-value=3.7e-13  Score=100.24  Aligned_cols=310  Identities=15%  Similarity=0.149  Sum_probs=175.9

Q ss_pred             CCHH-HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----------
Q ss_conf             8999-99999999838875699877898999999998642101333322332334543333222222233----------
Q gi|254780602|r   45 MPEN-VKYAVVRAMERGETKYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFNALMATVN----------  113 (400)
Q Consensus        45 ~p~~-i~~a~~~al~~~~~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l~~~~~~~~~----------  113 (400)
                      .|+. +-+.+..+++.....|..+++.-++-+.+.+|+.+..|.+-+...=++|+|++++...++.+--+          
T Consensus        10 ~~~~~l~d~l~~~~n~~~~~~~~sP~~t~lE~~vi~wl~~l~g~p~~~~~G~~tsGgs~anl~al~~AR~~~~~~~~~~~   89 (345)
T cd06450          10 DPPALLLEMLTSAKNAIDFTWDESPAATEMEAEVVNWLAKLFGLPSEDADGVFTSGGSESNLLALLAARDRARKRLKAGG   89 (345)
T ss_pred             CHHHHHHHHHHHCCCCCCCCHHHCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             89999999999621767876434858999999999999998389977887698275689999999999999988887416


Q ss_pred             -CC-C--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCC------CCCEEECCCCCCCCCCCCC
Q ss_conf             -22-3--222233332322222222222222222222232221033310001221------2201211354210000123
Q gi|254780602|r  114 -MG-D--EVLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQAITPK------TKWLFLNSPSNPSGVVYSQ  183 (400)
Q Consensus       114 -~G-d--~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~------~k~i~l~nP~NPTG~v~s~  183 (400)
                       .+ .  .|++.+-.-......+...|..++.+|++++.  .+|++.|++.|.+.      +=+|+-+-..-.||.+   
T Consensus        90 ~~~~~~~~v~~s~~aH~Sv~KAa~ilg~~~~~vp~d~~~--~md~~~L~~~i~~~~~~g~~p~~vvataGTT~~Gai---  164 (345)
T cd06450          90 GRGIDKLVIVCSDQAHVSVEKAAAYLDVKVRLVPVDEDG--RMDPEALEAAIDEDKAEGLNPIMVVATAGTTDTGAI---  164 (345)
T ss_pred             CCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEECCCCC--CCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCC---
T ss_conf             778887699988975289999999748976997539998--088999999999998669973899955787676256---


Q ss_pred             CCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             33321112233333201110122110000012233222111233322574146544322344544422110122687531
Q gi|254780602|r  184 NRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTGLRIGYAAGALSLIKSMIV  263 (400)
Q Consensus       184 ~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~v~~~~li~~l~~  263 (400)
                      +.+++|.++| +++++|+-+|.+|..+..--.++.....-.+.  -..|++ .+.|...+| +-+|++..     +    
T Consensus       165 D~l~~i~~i~-~~~~iwlHVDaA~GG~~~~~~~~~~~~~gie~--aDSit~-d~HK~l~~p-~~~~~~l~-----r----  230 (345)
T cd06450         165 DPLEEIADLA-EKYDLWLHVDAAYGGFLLPFPEPRHLDFGIER--VDSISV-DPHKYGLVP-LGCSAVLV-----R----  230 (345)
T ss_pred             CCHHHHHHHH-HHCCCCEEEECHHCCHHHCCCCCCHHHCCCCC--CCEEEE-CCHHCCCCC-CCCEEEEH-----H----
T ss_conf             7899999999-98499477510001201106220076579999--888998-812224878-88268861-----8----


Q ss_pred             HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEE-CCCCEEEEEECCCCCCCCCCCCC
Q ss_conf             00122233222222222222346764322222211000000024553047760330-27408998626410233211332
Q gi|254780602|r  264 LQGQQTSGACSIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQGVPGIRYMI-PDGAFYLYPSCQDLIGKKSPSGD  342 (400)
Q Consensus       264 ~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~~~~~L~~~~g~~~~~-p~g~~y~~~~~~~~~~~~~~~~~  342 (400)
                                .+-.+.....+  +.+-+.+..+..-+..+++.+.+++.+++++.. |+=+.-+|--.+        ...
T Consensus       231 ----------alklw~~l~~~--G~~g~~~~i~~~~~~a~~l~~~l~~~~~~el~~~p~l~iV~Fr~~~--------~~~  290 (345)
T cd06450         231 ----------ALKLWATLRRF--GRDGYGEHIDRIVDLAKYLAELIRADPGFELLGEPNLSLVCFRLKP--------SVK  290 (345)
T ss_pred             ----------HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCEEEEEEEECC--------CHH
T ss_conf             ----------88999999999--8999999999999999999999962989899669965899999768--------201


Q ss_pred             CCCCHHHHHHHHHHHCCEEEECCCCCCCCCEEEEEEE---CCHHHHHHHHHHHHH
Q ss_conf             2489899999999873979983502289972899962---999999999999999
Q gi|254780602|r  343 VIRTDLDFVNGLLEIEKVAVVQGSSFGHGPSIRISYA---VSDAILEEACVRIKR  394 (400)
Q Consensus       343 ~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~iRis~~---~~~e~l~~al~rl~~  394 (400)
                      ......++.++|.++.+..+ +.+..+...++|++++   ++++.+++-++.|++
T Consensus       291 ~d~~~~~l~~~l~~~g~~~v-s~t~~~g~~~lR~~i~n~~tt~~di~~l~~~i~~  344 (345)
T cd06450         291 LDELNYDLSDRLNERGGWHV-PATTLGGPNVLRFVVTNPLTTRDDADALLEDIER  344 (345)
T ss_pred             CCHHHHHHHHHHHHCCCEEE-EEEEECCEEEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             14899999999981399998-6159999789999979999999999999999974


No 266
>PRK06541 hypothetical protein; Provisional
Probab=99.38  E-value=9.1e-12  Score=91.74  Aligned_cols=351  Identities=13%  Similarity=0.115  Sum_probs=179.1

Q ss_pred             CCCCEEECCCCCC--CCC-CCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             6997266565897--498-8999999999998388756998778989999999986421013333223323345433332
Q gi|254780602|r   29 KGIDVLCLTAGEP--DFD-MPENVKYAVVRAMERGETKYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIF  105 (400)
Q Consensus        29 ~g~~ii~l~~G~p--~~~-~p~~i~~a~~~al~~~~~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l~  105 (400)
                      .|++.+|+..|--  .+. -+|.|.+|+++.+++..+ .+.....-+.+..+|+.+.+...  -+-+.|.++++++++..
T Consensus        50 dG~~ylD~~~g~~~~~lGH~hp~v~~Ai~~Q~~~l~~-~~~~~~~~~~~~~lae~L~~~~p--~~l~~v~f~~SGsEA~E  126 (460)
T PRK06541         50 RGKRYLDGLAGLFVVQVGHGRAELAEAAAEQAGTLAF-FPLWSYAHPPAIELAERLAALAP--GDLNRVFFTTGGSEAVE  126 (460)
T ss_pred             CCCEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHCCC-CCCCCCCCHHHHHHHHHHHHHCC--CCCCEEEEECCHHHHHH
T ss_conf             9999999651487531178989999999999975787-56775578799999999997488--88698997087489999


Q ss_pred             CCCCCCC-------CCCC-CCCCCCCCCCCCCCC-CCCCCC---C---------CCCCC------CCCCC----CC-CCH
Q ss_conf             2222223-------3223-222233332322222-222222---2---------22222------22223----22-210
Q gi|254780602|r  106 NALMATV-------NMGD-EVLIPRPYWVSYPDM-VALCGG---I---------PVFVD------TQQDD----NF-QVS  153 (400)
Q Consensus       106 ~~~~~~~-------~~Gd-~Vlv~~P~y~~y~~~-~~~~g~---~---------~~~v~------~~~~~----~~-~~d  153 (400)
                      .+++.--       ++|. +||...-+|-..... ....|.   +         ...+|      ....+    .+ ...
T Consensus       127 ~AiklAr~y~~~~G~~~r~~iis~~~~yHG~t~ga~s~tg~~~~~~~~~p~~~g~~~vp~~~~~~~~~~~~~~~~~~~~~  206 (460)
T PRK06541        127 SAWKLAKQYFKLTGKPGKHKVISRAIAYHGTTQGALAITGLPAFKAPFEPLTPGGFRVPNTNFYRAPEHGDDPEAFGRWA  206 (460)
T ss_pred             HHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHCCCHHHCCCCCCCCCCCEECCCCCCCCCCCCCCCHHHHHHHH
T ss_conf             99999999999619998618999668716786578875188000378878899916768886445776789988999999


Q ss_pred             HHHHHCCCCC----CCCCEEECCC-CCCCCCCC-CCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC-CCCCCCCC
Q ss_conf             3331000122----1220121135-42100001-2333321112233333201110122110000012233-22211123
Q gi|254780602|r  154 PEKLEQAITP----KTKWLFLNSP-SNPSGVVY-SQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFS-NIVNVEPS  226 (400)
Q Consensus       154 ~~~l~~~i~~----~~k~i~l~nP-~NPTG~v~-s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~-s~~~~~~~  226 (400)
                      .+.+++.+..    ++-++++ -| ++-.|.+. +++.+++|-++| +++|+++|.||+...|.=.|.-+. .-..+.|+
T Consensus       207 ~~~~~~~i~~~~~~~iAavI~-EPi~g~gG~~~~~~~fl~~lr~lc-~~~gillI~DEVqtGfGRtG~~fa~e~~gv~PD  284 (460)
T PRK06541        207 ADRIEEAIEFEGPDTVAAVFL-EPVQNAGGCFPPPPGYFERVREIC-DRYDVLLVSDEVICAFGRLGEMFGCERFGYVPD  284 (460)
T ss_pred             HHHHHHHHHHCCCCCEEEEEE-CCCCCCCCCCCCCHHHHHHHHHHH-CCCCCEEECCCCEECCCCCCCCCHHCCCCCCCC
T ss_conf             999999998519985789984-577787886568689999999974-647953766751207865337322016894895


Q ss_pred             CCCEEEEECCCCCCCCCCC-CCCCCCCCHHHHHHHHHHHC----CCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCC
Q ss_conf             3322574146544322344-54442211012268753100----1222332222222222223467--643222222110
Q gi|254780602|r  227 LYERTLVVNGVSKAYAMTG-LRIGYAAGALSLIKSMIVLQ----GQQTSGACSIAQWAAVEALNGP--QDFVVNNRKIFE  299 (400)
Q Consensus       227 ~~~~~i~~~S~SK~~~~~G-~RiG~~v~~~~li~~l~~~~----~~~~~~~~~~~q~a~~~~l~~~--~~~~~~~~~~~~  299 (400)
                             +-+++|.++ .| .-+|.+++.+++.+.+..-.    ...+.+.+.+...++.+.|+.-  ++.++    ..+
T Consensus       285 -------iv~~gKglg-~G~~Pl~av~~~~~i~~~~~~~~~~~~hg~T~~gnpla~aaa~avL~~i~~~~l~~----~v~  352 (460)
T PRK06541        285 -------IITCAKGIT-SGYSPLGAMIASDRLVEPFLDGKTMFLHGYTFGGHPVSAAVALANLDIFEREGLLD----HVR  352 (460)
T ss_pred             -------HHHHHHHCC-CCCCCCEEEECCHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHH----HHH
T ss_conf             -------141223125-88777046740399987652688531357678889899999999999998657999----999


Q ss_pred             CCCCCHHHHHHC---CCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCC--HHHHHHHHHHHCCEEEECCCCCCCCCEE
Q ss_conf             000000245530---47760330274089986264102332113322489--8999999998739799835022899728
Q gi|254780602|r  300 YRRDLCVAQLQG---VPGIRYMIPDGAFYLYPSCQDLIGKKSPSGDVIRT--DLDFVNGLLEIEKVAVVQGSSFGHGPSI  374 (400)
Q Consensus       300 ~~r~~~~~~L~~---~~g~~~~~p~g~~y~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Ll~~~gV~v~pG~~Fg~~~~i  374 (400)
                      ++-+++.+.|++   .|-+.=++.. |+++=+++-.-.....+.......  -..+....+.++|+.+.+....  ++-|
T Consensus       353 ~~G~~l~~~L~~l~~~p~v~dVRG~-GL~~giElv~d~~~~~~~~~~~~~~~~~~~l~~~~~~~Gl~~~~~~~~--~~vi  429 (460)
T PRK06541        353 DNEPAFRATLEKLLDLPIVGDVRGD-GYFYGIELVKDKATKETFTDDESERLLRGFLSPALFEAGLYCRADDRG--DPVV  429 (460)
T ss_pred             HHHHHHHHHHHHHHCCCCEEEEECC-CEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCC--CCEE
T ss_conf             9999999999997469977874107-738999954576545667646778999999999999789599745899--9889


Q ss_pred             EEE--EECCHHHHHHHHHHHHHHHHHC
Q ss_conf             999--6299999999999999999860
Q gi|254780602|r  375 RIS--YAVSDAILEEACVRIKRFCHSL  399 (400)
Q Consensus       375 Ris--~~~~~e~l~~al~rl~~~l~~l  399 (400)
                      |+.  +..+++++++++++|++.|+..
T Consensus       430 rl~PPL~it~~eid~~l~~l~~aL~e~  456 (460)
T PRK06541        430 QLAPPLISGQEEFDEIEAILRSVLTEA  456 (460)
T ss_pred             EEECCEECCHHHHHHHHHHHHHHHHHH
T ss_conf             997893378999999999999999999


No 267
>TIGR03372 putres_am_tran putrescine aminotransferase. Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine.
Probab=99.38  E-value=5.8e-12  Score=92.92  Aligned_cols=336  Identities=15%  Similarity=0.138  Sum_probs=180.7

Q ss_pred             CCCCEEECCCCCC--CCC-CCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             6997266565897--498-8999999999998388756998778989999999986421013333223323345433332
Q gi|254780602|r   29 KGIDVLCLTAGEP--DFD-MPENVKYAVVRAMERGETKYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIF  105 (400)
Q Consensus        29 ~g~~ii~l~~G~p--~~~-~p~~i~~a~~~al~~~~~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l~  105 (400)
                      .|+..||+..|--  .+. -+|.|.+|+++.+++..+ |+... ..+.+..+|+.+.....-  .-+.+++++++++|..
T Consensus        73 dG~~YLD~~sG~~~~~lGH~hp~I~~Ai~~Ql~~~~~-~s~~~-~~~~~~~lae~L~~~~P~--~~~~vff~nSGSEAvE  148 (442)
T TIGR03372        73 QGNEFIDCLGGFGIFNVGHRNPNVIAAVENQLAKQPL-HSQEL-LDPLRALLAKTLAALTPG--KLKYSFFCNSGTESVE  148 (442)
T ss_pred             CCCEEEECCHHHHHHHCCCCCHHHHHHHHHHHHHCCC-EECCC-CCHHHHHHHHHHHHHCCC--CCCEEEECCCCHHHHH
T ss_conf             8999888456388510067989999999999723683-01444-568999999999974788--8787986388679999


Q ss_pred             CCCCCC---C-CCCC-CCCCCCCCCCCCCC-CCCCCCCCCC---CCCCCCCCCCC--CHHHHHHCCCC------CCCCCE
Q ss_conf             222222---3-3223-22223333232222-2222222222---22222223222--10333100012------212201
Q gi|254780602|r  106 NALMAT---V-NMGD-EVLIPRPYWVSYPD-MVALCGGIPV---FVDTQQDDNFQ--VSPEKLEQAIT------PKTKWL  168 (400)
Q Consensus       106 ~~~~~~---~-~~Gd-~Vlv~~P~y~~y~~-~~~~~g~~~~---~v~~~~~~~~~--~d~~~l~~~i~------~~~k~i  168 (400)
                      .++...   . ..|. .|+....+|-.-.. .....|....   +.|+.+.-.+.  .|.+.+++.+.      +++.++
T Consensus       149 ~AiKlAr~y~~~~Gk~~ii~~~~syHG~T~ga~s~t~~~~~~~~~~p~~~~~~~~~~~d~~~~~~~~~~~~~~~~~iAav  228 (442)
T TIGR03372       149 AALKLAKAYQSPRGKFTFIAASGAFHGKSLGALSATAKPAFRKPFMPLLPGFHHVAFGDIEAMLKALNECKKTGDDVAAI  228 (442)
T ss_pred             HHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCHHHHHHHHHHHHHCCCCEEEE
T ss_conf             99999999732689818999916778747570302478433578878999825557899999999999887559978999


Q ss_pred             EECCC-CCCCCCC-CCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC-CCCCCCCCCCCEEEEECCCCCCCCCCC
Q ss_conf             21135-4210000-12333321112233333201110122110000012233-222111233322574146544322344
Q gi|254780602|r  169 FLNSP-SNPSGVV-YSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFS-NIVNVEPSLYERTLVVNGVSKAYAMTG  245 (400)
Q Consensus       169 ~l~nP-~NPTG~v-~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~-s~~~~~~~~~~~~i~~~S~SK~~~~~G  245 (400)
                      ++ -| +--.|.+ .+++.+++|.++| +++++++|.||+...+.=.|.-+. .-..+.|+       +-+++|.++-.+
T Consensus       229 ii-EPiqg~gG~~~p~~~yl~~lr~lc-~~~gvllI~DEVqtGfGRTG~~fa~e~~gV~PD-------Ivt~gKgLggG~  299 (442)
T TIGR03372       229 IL-EPIQGEGGVILPPEGYLPAVRALC-DEFGALLILDEVQTGMGRTGKMFACEHEGVQPD-------ILCLAKALGGGV  299 (442)
T ss_pred             EE-ECCCCCCCCCCCCHHHHHHHHHHH-HHCCCCEECCCCCCCCCCCCCCHHHHCCCCCCC-------HHHHHHHHCCCC
T ss_conf             98-467777787449999999999999-984970323621227984778337654899997-------686545415887


Q ss_pred             CCCCCCCCHHHHHHHHHH--HCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCHHHHHHCC----CC-CE
Q ss_conf             544422110122687531--001222332222222222223467--6432222221100000002455304----77-60
Q gi|254780602|r  246 LRIGYAAGALSLIKSMIV--LQGQQTSGACSIAQWAAVEALNGP--QDFVVNNRKIFEYRRDLCVAQLQGV----PG-IR  316 (400)
Q Consensus       246 ~RiG~~v~~~~li~~l~~--~~~~~~~~~~~~~q~a~~~~l~~~--~~~~~~~~~~~~~~r~~~~~~L~~~----~g-~~  316 (400)
                      +-+|.+++.+++.+.+..  .....+.+.+++...++++.|+.-  ++.++    ..+++.+++.+.|+++    |. +.
T Consensus       300 ~Pi~av~~~~~i~~~~~~~~~~h~sTf~Gnpla~aaalavL~~i~~~~l~~----~~~~~G~~l~~~L~~L~~~~p~~V~  375 (442)
T TIGR03372       300 MPIGATIATEAVFSVLFDNPFLHTTTFGGNPLACAAALATINELLEKNLPA----QAAIKGDFLLDGFQQLAAEYPDLII  375 (442)
T ss_pred             CCEEEEEECHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHH----HHHHHHHHHHHHHHHHHHHCCCCEE
T ss_conf             762689750999877624897547888989999999999999998656999----9999999999999999876878166


Q ss_pred             EEECCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCCCCEEEEE--EECCHHHHHHHHHHHHH
Q ss_conf             3302740899862641023321133224898999999998739799835022899728999--62999999999999999
Q gi|254780602|r  317 YMIPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGHGPSIRIS--YAVSDAILEEACVRIKR  394 (400)
Q Consensus       317 ~~~p~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~iRis--~~~~~e~l~~al~rl~~  394 (400)
                      -.+.. |+++=+++.+           ......++..++ +.||++...-  +..+-|||.  +..++|++++++++|++
T Consensus       376 dVRG~-GLm~giE~~~-----------~~~~~~~~~~~~-~~gvl~~~~~--~~~~~iri~PPL~it~eeid~~i~~l~~  440 (442)
T TIGR03372       376 EARGK-GLLMAIEFRD-----------NEIGYAFAKELF-QQNILVAGTL--NNAKSIRIEPPLTITIEQCALVIKAAKD  440 (442)
T ss_pred             EEEEC-CEEEEEEECC-----------CHHHHHHHHHHH-HCCCEEEECC--CCCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             85645-3899999788-----------167999999999-7897998558--9989899988950899999999999998


Q ss_pred             HH
Q ss_conf             99
Q gi|254780602|r  395 FC  396 (400)
Q Consensus       395 ~l  396 (400)
                      .|
T Consensus       441 aL  442 (442)
T TIGR03372       441 AL  442 (442)
T ss_pred             HC
T ss_conf             69


No 268
>PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=99.38  E-value=1e-11  Score=91.47  Aligned_cols=345  Identities=14%  Similarity=0.126  Sum_probs=173.1

Q ss_pred             CCCCEEECCCCC--C--CCCCCHHHHHHHHHHHHCCC----CCCCCCCCCHHHHHHHHHHHHHHCCCC---CCCCCCCCC
Q ss_conf             699726656589--7--49889999999999983887----569987789899999999864210133---332233233
Q gi|254780602|r   29 KGIDVLCLTAGE--P--DFDMPENVKYAVVRAMERGE----TKYTAVAGISPLREAIVEKFRRDNDLH---YTSDQIIVG   97 (400)
Q Consensus        29 ~g~~ii~l~~G~--p--~~~~p~~i~~a~~~al~~~~----~~Y~~~~G~~~lR~aia~~~~~~~g~~---~~~e~I~it   97 (400)
                      +|+..+|+..|-  .  .+. .|.|.+|+.+.+++-.    .+|+.    +. ...+|+.+.+.....   -.-+.|+++
T Consensus        62 dG~~yLD~~sg~~~~~lGh~-~p~i~~Ai~~Q~~~l~~~~~~~~~~----~~-~~~Lae~L~~~~P~~~~~~~l~~Vff~  135 (472)
T PRK08742         62 DGRRYLDAVSSWWTNLFGHA-EPRIGAAIAAQAGELEQVMLAGFTH----EP-AVQLAERLLAIAPRQPGRAPLSKVFYA  135 (472)
T ss_pred             CCCEEEECCCCHHHHCCCCC-CHHHHHHHHHHHHHCCCCCCCCCCC----HH-HHHHHHHHHHHCCCCCCCCCCCEEEEC
T ss_conf             99999886644896475579-8999999999997666601377677----18-999999999857344566776879971


Q ss_pred             CCCCCCCCCCCCCC-------CCCCC-CCCCCCCCCCCCCCCC-CCCCC------------CCCCCCCC------C---C
Q ss_conf             45433332222222-------33223-2222333323222222-22222------------22222222------2---2
Q gi|254780602|r   98 TGAKHVIFNALMAT-------VNMGD-EVLIPRPYWVSYPDMV-ALCGG------------IPVFVDTQ------Q---D  147 (400)
Q Consensus        98 ~G~~~~l~~~~~~~-------~~~Gd-~Vlv~~P~y~~y~~~~-~~~g~------------~~~~v~~~------~---~  147 (400)
                      ++++++...+++..       ..++. .|+...-+|-.-...+ ...|.            ....+|..      .   .
T Consensus       136 ~SGSEAvE~AiKlA~~y~~~rg~~~r~~ii~~~~~YHG~T~ga~s~~~~~~~~~~~~~~~~~~~~~p~p~~~~~~~~~~~  215 (472)
T PRK08742        136 DNGSAGVEVALKMAFHYFHNRGEHRRTRFIALENGYHGETIGALSVGDIPLYRRVYAPLLLESLFAPSPDAYLAEPGQSA  215 (472)
T ss_pred             CCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCH
T ss_conf             86689999999999999995399877158730587888727656515883225677787888456589975346788877


Q ss_pred             CCCC-CHHHHHHCCCCC---CCCCEEECCC--CCCCCCCC-CCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC-C
Q ss_conf             3222-103331000122---1220121135--42100001-2333321112233333201110122110000012233-2
Q gi|254780602|r  148 DNFQ-VSPEKLEQAITP---KTKWLFLNSP--SNPSGVVY-SQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFS-N  219 (400)
Q Consensus       148 ~~~~-~d~~~l~~~i~~---~~k~i~l~nP--~NPTG~v~-s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~-s  219 (400)
                      ..|. -..+.++..+.+   ++-++++ -|  ++-.|.+. +++-++++-++| +++|+++|.||+...|.=.|.-+. .
T Consensus       216 ~~~~~~~~~~le~~~~~~~~~iAA~Ii-EPviqg~GG~~~p~~~yl~~lr~lc-~~~giLLI~DEV~tGfGRtG~~fa~e  293 (472)
T PRK08742        216 EDYALQAADALQALFEQSPGEICALIL-EPRVQCAGGMRMHHPAYLRRARELC-DAHGAFLIADEIATGFGRTGTLFACE  293 (472)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCEEEEEE-CCCCCCCCCEECCCHHHHHHHHHHH-HHHCCEEEECCCCCCCCCCCCCEEEC
T ss_conf             899999899999999857886479997-1576653870568999999999998-87296688403301687134452312


Q ss_pred             CCCCCCCCCCEEEEECCCCCCCCCCC-CCCCCCCCHHHHHHHHHHH-------CCCCCCCCCCCCCCCCCCCCCCC--CC
Q ss_conf             22111233322574146544322344-5444221101226875310-------01222332222222222223467--64
Q gi|254780602|r  220 IVNVEPSLYERTLVVNGVSKAYAMTG-LRIGYAAGALSLIKSMIVL-------QGQQTSGACSIAQWAAVEALNGP--QD  289 (400)
Q Consensus       220 ~~~~~~~~~~~~i~~~S~SK~~~~~G-~RiG~~v~~~~li~~l~~~-------~~~~~~~~~~~~q~a~~~~l~~~--~~  289 (400)
                      -..+.|+     |+  +++|..+ .| +-+|.+++.+++.+.+..-       +.+ +.+.+.+...++++.|+--  ++
T Consensus       294 ~~gv~PD-----iv--~~aKglt-gGy~Plsav~~~~eI~~~~~~~~~~~~~~hg~-Ty~GnPlacAaala~L~i~~~e~  364 (472)
T PRK08742        294 QAGVMPD-----LL--CLSKGLT-GGFLPLSAVLATQQLYDAFLDDSRERAFLHSH-SYTGNPLACAAALATLDIFADDD  364 (472)
T ss_pred             CCCCCCC-----EE--EECHHHC-CCCCCEEEEEECHHHHHHHCCCCCCCCCCCCC-CCCCCHHHHHHHHHHHHHHHHCC
T ss_conf             4677997-----20--1212103-88777078987699997651477666513578-99999899999999999998655


Q ss_pred             CCCCCCCCCCCCCCCHHHHHHCCCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCC
Q ss_conf             32222221100000002455304776033027408998626410233211332248989999999987397998350228
Q gi|254780602|r  290 FVVNNRKIFEYRRDLCVAQLQGVPGIRYMIPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFG  369 (400)
Q Consensus       290 ~~~~~~~~~~~~r~~~~~~L~~~~g~~~~~p~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg  369 (400)
                      .+++ .+....+...+.+.+.+.|.+.=++..| +++=+++..-.....+.........++++. ..+.|+++.|.    
T Consensus       365 l~~~-~~~~g~~l~~~~~~l~~~p~V~dVRg~G-L~~gvElv~d~~~~~~~~~~~~~~~~~~~~-~~~~Gll~r~~----  437 (472)
T PRK08742        365 VIAR-NQPIAARMTQLAAQIGEHPAVADVRQAG-MIVAFELTRGGNKRTPFPPAARVGLHAYRA-ALARGVVLRPL----  437 (472)
T ss_pred             HHHH-HHHHHHHHHHHHHHCCCCCCEEEECCCC-EEEEEEECCCCCCCCCCCHHHHHHHHHHHH-HHHCCCEEEEC----
T ss_conf             9999-9999999999999615899789842686-499999715876578787778999999999-99789489854----


Q ss_pred             CCCEEEEE--EECCHHHHHHHHHHHHHHHHH
Q ss_conf             99728999--629999999999999999986
Q gi|254780602|r  370 HGPSIRIS--YAVSDAILEEACVRIKRFCHS  398 (400)
Q Consensus       370 ~~~~iRis--~~~~~e~l~~al~rl~~~l~~  398 (400)
                       .+.||++  +..+++++++++++|++.++.
T Consensus       438 -G~~i~~~PPL~it~~eid~~~~~l~~al~e  467 (472)
T PRK08742        438 -GDVLYWMPPYCVDEAQLALLADTTRHAIDE  467 (472)
T ss_pred             -CCEEEEECCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             -999999799406899999999999999999


No 269
>PRK12403 putative aminotransferase; Provisional
Probab=99.38  E-value=1.4e-11  Score=90.61  Aligned_cols=348  Identities=12%  Similarity=0.068  Sum_probs=170.3

Q ss_pred             CCCCEEECCCCC--CCCC-CCHHHHHHHHHHHHCCCCCCCCCCC-CHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf             699726656589--7498-8999999999998388756998778-98999999998642101333322332334543333
Q gi|254780602|r   29 KGIDVLCLTAGE--PDFD-MPENVKYAVVRAMERGETKYTAVAG-ISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVI  104 (400)
Q Consensus        29 ~g~~ii~l~~G~--p~~~-~p~~i~~a~~~al~~~~~~Y~~~~G-~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l  104 (400)
                      .|+..+|+..|-  ..+. -+|.|.+|+++.+++-.+ ++...+ ..+.+.++|+.+.....  -.-+.+++++++++|.
T Consensus        52 dG~~ylD~~sg~~~~~lGh~~p~I~~Ai~~q~~~l~~-~~~~~~~~~~~~~elAe~L~~~~P--~~~~~v~f~~sGSEA~  128 (460)
T PRK12403         52 DGKRYLDGMSGLWCTNLGYGRKDLAAAAARQMEQLPY-YNMFFHTTHPAVIELSELLFSLLP--GHYSHAIYTNSGSEAN  128 (460)
T ss_pred             CCCEEEECCCCHHHHHHCCCCHHHHHHHHHHHHHCCC-CCCCCCCCCHHHHHHHHHHHHHCC--CCCCEEEECCCHHHHH
T ss_conf             9899999563688643557959999999999975587-156545678899999999997578--7658698448718999


Q ss_pred             CCCCCCCC-------CCCCCCCC-CCCCCCCCCCCC-CCCCC-----------CCC--CCCCC--CCCCCCC------HH
Q ss_conf             22222223-------32232222-333323222222-22222-----------222--22222--2232221------03
Q gi|254780602|r  105 FNALMATV-------NMGDEVLI-PRPYWVSYPDMV-ALCGG-----------IPV--FVDTQ--QDDNFQV------SP  154 (400)
Q Consensus       105 ~~~~~~~~-------~~Gd~Vlv-~~P~y~~y~~~~-~~~g~-----------~~~--~v~~~--~~~~~~~------d~  154 (400)
                      ..+++..-       +++..+++ ..-+|-.....+ ...|.           ...  +.|..  ..++..+      ..
T Consensus       129 E~AiklAr~y~~~~g~~~~~~ii~~~~~yHG~T~ga~s~sg~~~~~~~~~~~p~~~~~~~P~~~~~~~~~~~~~~~~~~~  208 (460)
T PRK12403        129 EVLIRTVRRYWQVLGKPQKKIMIGRWNGYHGSTLAATALGGMKFMHEMGGLIPDVAHIDEPYWYANGGELTPAEFGRRAA  208 (460)
T ss_pred             HHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf             99999999999860899746999966887740798872467412445678899841147754455667788778889999


Q ss_pred             HHHHCCCC----CCCCCEEECCCC-CCCCCC-CCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCC-CCCCCCCC
Q ss_conf             33100012----212201211354-210000-123333211122333332011101221100000122332-22111233
Q gi|254780602|r  155 EKLEQAIT----PKTKWLFLNSPS-NPSGVV-YSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSN-IVNVEPSL  227 (400)
Q Consensus       155 ~~l~~~i~----~~~k~i~l~nP~-NPTG~v-~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s-~~~~~~~~  227 (400)
                      .++++.+.    +++-+|+ .-|= .-.|.+ .++..+++|-++| +++|+++|.||++..|.=.|.-+.. -..+.|+ 
T Consensus       209 ~~le~~i~~~~~~~iAavi-~EPi~g~gG~i~pp~~yl~~lr~lc-~~~gillI~DEV~tGfGRtG~~fa~e~~gV~PD-  285 (460)
T PRK12403        209 LQLEEKILELGAENVAGFV-AEPFQGAGGMIFPPESYWPEIQRIC-RQYDVLLCADEVIGGFGRTGEWFAHEHFGFEPD-  285 (460)
T ss_pred             HHHHHHHHHHCCCCEEEEE-ECCCCCCCCEECCCHHHHHHHHHHH-HCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCC-
T ss_conf             9999999962898669999-5452255865727567769999997-325966998625127763437730021795877-


Q ss_pred             CCEEEEECCCCCCCCCCC-CCCCCCCCHHHHHHHHHHHC----CCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCC
Q ss_conf             322574146544322344-54442211012268753100----1222332222222222223467--6432222221100
Q gi|254780602|r  228 YERTLVVNGVSKAYAMTG-LRIGYAAGALSLIKSMIVLQ----GQQTSGACSIAQWAAVEALNGP--QDFVVNNRKIFEY  300 (400)
Q Consensus       228 ~~~~i~~~S~SK~~~~~G-~RiG~~v~~~~li~~l~~~~----~~~~~~~~~~~q~a~~~~l~~~--~~~~~~~~~~~~~  300 (400)
                          |+  +++|..+ .| +-+|.+++.+++.+.+..-.    ...+.+.+.+...++.+.|+.-  +..+++.+....+
T Consensus       286 ----iv--t~gK~l~-gG~~Plsav~~~~~i~~~~~~~~~~~~hg~T~~Gnpla~Aaala~l~~i~~e~l~~~~~~~~g~  358 (460)
T PRK12403        286 ----TL--SIAKGLT-SGYVPMGGLVLSKRIAEALVEQGGVFAHGLTYSGHPVAAAVAIANLKALRDEGVVTRVKDDTGP  358 (460)
T ss_pred             ----EE--EECCCCC-CCCCCEEEEEECHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_conf             ----12--2212445-7877617997358999875037865014778899989999999999999866699999999999


Q ss_pred             C-CCCHHHHHHCCCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCHHHHH---HHHHHHCCEEEECCCCCCCCCEEEE
Q ss_conf             0-00002455304776033027408998626410233211332248989999---9999873979983502289972899
Q gi|254780602|r  301 R-RDLCVAQLQGVPGIRYMIPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFV---NGLLEIEKVAVVQGSSFGHGPSIRI  376 (400)
Q Consensus       301 ~-r~~~~~~L~~~~g~~~~~p~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~---~~Ll~~~gV~v~pG~~Fg~~~~iRi  376 (400)
                      . ++.+.+.+++.+.+.=++..| +++=+++.+......+    .....+++   ..+..+.|+++.+.     .+.+++
T Consensus       359 ~l~~~L~~l~~~~p~vgdVRG~G-Lm~gielv~~~~~~~~----~~~~~~~~~~~~~~~~~~Glli~~~-----~~~~~l  428 (460)
T PRK12403        359 YLQRCLREVFGDHPLVGEVQGAG-LVAALQFAEDKATRKR----FANENDLAWRCRTIGFEEGVIIRST-----LGRMIM  428 (460)
T ss_pred             HHHHHHHHHHHCCCCEEEEECCC-EEEEEEECCCCCCCCC----CCCHHHHHHHHHHHHHHCCEEEEEC-----CCEEEE
T ss_conf             99999999872599588630145-4999994257642113----6525789999999999799899736-----980999


Q ss_pred             E--EECCHHHHHHHHHHHHHHHHHC
Q ss_conf             9--6299999999999999999860
Q gi|254780602|r  377 S--YAVSDAILEEACVRIKRFCHSL  399 (400)
Q Consensus       377 s--~~~~~e~l~~al~rl~~~l~~l  399 (400)
                      +  +..+++++++++++|.+.++..
T Consensus       429 ~PPLiit~~eid~~~~~l~~al~~~  453 (460)
T PRK12403        429 APALVAGRAEIDELVDKTRIAVDRT  453 (460)
T ss_pred             ECCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             8994388999999999999999999


No 270
>TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase; InterPro: IPR012749    This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family..
Probab=99.35  E-value=7.4e-13  Score=98.36  Aligned_cols=190  Identities=20%  Similarity=0.292  Sum_probs=132.9

Q ss_pred             HHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCC
Q ss_conf             99999998388756998778989999999986421013333223323345433332222222-33223222233332322
Q gi|254780602|r   50 KYAVVRAMERGETKYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFNALMAT-VNMGDEVLIPRPYWVSY  128 (400)
Q Consensus        50 ~~a~~~al~~~~~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l~~~~~~~-~~~Gd~Vlv~~P~y~~y  128 (400)
                      .+.+.+|+..+.+   ...|.  .-+....|+.++.    +....++|+.++.+|.++...+ +++||+||+|+-+|..-
T Consensus        14 l~~i~~A~~~~kL---~GdG~--F~~~C~~Wl~~~~----~~~K~lLTpSCT~aLEmaAlL~Di~~GDEVIMPSyTFVST   84 (376)
T TIGR02379        14 LEYIAEAISEGKL---SGDGP--FSRRCEAWLEERT----GTKKALLTPSCTAALEMAALLLDIQPGDEVIMPSYTFVST   84 (376)
T ss_pred             HHHHHHHHHCCCC---CCCCH--HHHHHHHHHHHHH----CCCCCCCCCHHHHHHHHHHHHHCCCCCCEEECCCCHHHHH
T ss_conf             9999998616851---36851--1367789998851----5664211602567999999983046888367575145776


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCC
Q ss_conf             22222222222222222223222103331000122122012113542100001233332111223333320111012211
Q gi|254780602|r  129 PDMVALCGGIPVFVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYE  208 (400)
Q Consensus       129 ~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~  208 (400)
                      ..++.+.|+++++|+..++. ..+|...+|.+|++|||+|+.++-   .|..   -++..|..+ +++|+++||+|.+-+
T Consensus        85 ANAFvLRGa~~vFVDir~dT-mNiDe~~IE~AIt~rT~aIvpVHY---aGVa---C~M~tIM~l-a~k~~L~ViEDAAQG  156 (376)
T TIGR02379        85 ANAFVLRGAKIVFVDIRPDT-MNIDETKIEAAITERTKAIVPVHY---AGVA---CDMDTIMAL-ANKHELFVIEDAAQG  156 (376)
T ss_pred             HHHHHHCCCEEEEEEECCCC-CCCCHHHHHHHHCCCCEEEEEEEC---CCEE---CCHHHHHHH-HHHCCEEEEEECCCC
T ss_conf             67786728827999604200-046767898863258718998733---6421---054789877-643461699620047


Q ss_pred             CC-CCCCCCCCCCCCCCCCCCCEEEEECCC--CCCCCCCCCCCCCC-CCHHHHHHHHHHHCC
Q ss_conf             00-000122332221112333225741465--44322344544422-110122687531001
Q gi|254780602|r  209 HI-VYRNCQFSNIVNVEPSLYERTLVVNGV--SKAYAMTGLRIGYA-AGALSLIKSMIVLQG  266 (400)
Q Consensus       209 ~l-~~~~~~~~s~~~~~~~~~~~~i~~~S~--SK~~~~~G~RiG~~-v~~~~li~~l~~~~~  266 (400)
                      -. .|.|.+.-++..         +-.+||  +|++...| --|.+ +-++.++++..-++.
T Consensus       157 ~~S~YkgraLG~IGh---------~g~fSFHETKNy~~GG-EGGalliNd~~~~~RAEIirE  208 (376)
T TIGR02379       157 VMSTYKGRALGSIGH---------LGAFSFHETKNYTSGG-EGGALLINDQALIERAEIIRE  208 (376)
T ss_pred             CCCCCCCCCCCCHHC---------HHCCCCCCCCCCCCCC-CCCEEEEECHHHHHHHHHHHC
T ss_conf             410127876644000---------0021100013421257-755056607788766777630


No 271
>TIGR00707 argD acetylornithine and succinylornithine aminotransferases; InterPro: IPR004636   This family of proteins, for which ornithine aminotransferases form an outgroup, consists mostly of proteins designated acetylornithine aminotransferase. However, the two very closely related members from Escherichia coli are assigned different enzymatic activities. One is acetylornithine aminotransferase (2.6.1.11 from EC), ArgD, an enzyme of arginine biosynthesis, while another is succinylornithine aminotransferase, an enzyme of the arginine succinyltransferase pathway, an ammonia-generating pathway of arginine catabolism . Members of this family may also act on ornithine, like ornithine aminotransferase (2.6.1.13 from EC)  and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (2.6.1.17 from EC, DapC, an enzyme of lysine biosynthesis) . ; GO: 0008483 transaminase activity, 0006525 arginine metabolic process.
Probab=99.35  E-value=6.2e-12  Score=92.76  Aligned_cols=338  Identities=17%  Similarity=0.171  Sum_probs=193.6

Q ss_pred             CCCCEEEC--CCCCCCCC-CCHHHHHHHHHHHHC---CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf             69972665--65897498-899999999999838---8756998778989999999986421013333223323345433
Q gi|254780602|r   29 KGIDVLCL--TAGEPDFD-MPENVKYAVVRAMER---GETKYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKH  102 (400)
Q Consensus        29 ~g~~ii~l--~~G~p~~~-~p~~i~~a~~~al~~---~~~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~  102 (400)
                      +|+.=|||  +||-..+. ..|.+.||+++-++.   ..+-|..... .+|=+.|++......| .-|..+|++.|.+++
T Consensus        27 ~GK~YlDf~aGIAV~~LGH~hP~l~Ea~~~Q~~kL~H~SNlY~~~~~-~~LA~kLv~~~~~dgG-qhd~~rvFFCNSGaE  104 (402)
T TIGR00707        27 NGKEYLDFVAGIAVNALGHAHPKLVEALKEQLEKLVHVSNLYYTEPQ-EELAEKLVEHSGADGG-QHDASRVFFCNSGAE  104 (402)
T ss_pred             CCCEEEEECCCHHHHCCCCCCHHHHHHHHHHHHHHEEECCCCCCCHH-HHHHHHHHHHHHCCCC-CCCCCEEEEECCHHH
T ss_conf             89465201002244011357889999999866240660776558089-9999999999704688-302326675147478


Q ss_pred             CCCCCCCCC---CC----CCCCCCCCCCCCCCCCCCCCC-CCCCCC----CCCCCCCCCCCC--H-HHHHHCCCCCC---
Q ss_conf             332222222---33----223222233332322222222-222222----222222232221--0-33310001221---
Q gi|254780602|r  103 VIFNALMAT---VN----MGDEVLIPRPYWVSYPDMVAL-CGGIPV----FVDTQQDDNFQV--S-PEKLEQAITPK---  164 (400)
Q Consensus       103 ~l~~~~~~~---~~----~Gd~Vlv~~P~y~~y~~~~~~-~g~~~~----~v~~~~~~~~~~--d-~~~l~~~i~~~---  164 (400)
                      |...++..-   ..    ...++|-..=+|-. +.+..+ +..++.    +-||.++-.|.+  | +++++++|++.   
T Consensus       105 AnEAAlKlARk~~~~~g~~k~~ivaf~naFHG-RT~g~LsaTgqpKy~~~F~PLvpgf~y~~yNDe~~~l~~~i~~~~eg  183 (402)
T TIGR00707       105 ANEAALKLARKYTGDKGKEKKKIVAFENAFHG-RTMGALSATGQPKYQKPFEPLVPGFKYVPYNDEIEALKEAIDDEKEG  183 (402)
T ss_pred             HHHHHHHHHHHHHHCCCCCCCEEEEEEECCCC-CHHHHHHCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHCCCCC
T ss_conf             99999999898640227886538888707763-00454300477645685788423812444889789999985025778


Q ss_pred             --CCCEEECCC-CCCCCC-CCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCC-CCCCC--CCCCCCCEEEEECCC
Q ss_conf             --220121135-421000-01233332111223333320111012211000001223-32221--112333225741465
Q gi|254780602|r  165 --TKWLFLNSP-SNPSGV-VYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQF-SNIVN--VEPSLYERTLVVNGV  237 (400)
Q Consensus       165 --~k~i~l~nP-~NPTG~-v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~-~s~~~--~~~~~~~~~i~~~S~  237 (400)
                        |-+|+|= | +==.|. .-+.+.|+++-++|.+ +|++||.||+=-.+-=.|+-+ .--..  +.||    +|   ++
T Consensus       184 ~rtAAvivE-piQGEgGV~pa~~~fL~a~r~lc~~-~~~LLI~DEVQtG~GRTG~~fA~~Hygse~~PD----i~---T~  254 (402)
T TIGR00707       184 DRTAAVIVE-PIQGEGGVVPADKEFLKALRELCED-KDALLIFDEVQTGLGRTGKLFAYEHYGSEVEPD----II---TL  254 (402)
T ss_pred             CCEEEEEEE-EECCCCCCCCCCHHHHHHHHHHHHH-CCEEEEEEEEEECCCCCHHHHHHHCCCCCCCCH----HH---HH
T ss_conf             718899985-3217865334877899999999864-891899944752877433223312068845523----87---54


Q ss_pred             CCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCC----
Q ss_conf             4432234454442211012268753100122233222222222222346764322222211000000024553047----
Q gi|254780602|r  238 SKAYAMTGLRIGYAAGALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQGVP----  313 (400)
Q Consensus       238 SK~~~~~G~RiG~~v~~~~li~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~~~~~L~~~~----  313 (400)
                      -|.+| .|+-||.+++.+++.+.+.-=..-+++|-|++...|+...|+--++  +.+.+.-+++-+++.+.|+++.    
T Consensus       255 AKgLG-gG~PiGA~~~~e~~a~~~~~G~HGsTFGGNPLAc~Aa~~vl~~i~~--~~~l~~v~~~G~~f~~~L~~~~~~~~  331 (402)
T TIGR00707       255 AKGLG-GGVPIGAVLAKEEVAEALTPGDHGSTFGGNPLACAAALAVLEVIEK--ERLLEKVKEKGDYFKERLEELIKKYI  331 (402)
T ss_pred             HHHHH-CCCHHHHHEEHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             05552-7820223202367873158989866678738999998776665505--10478999988999999998617766


Q ss_pred             -CCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCCCCEEEEE--EECCHHHHHHHHH
Q ss_conf             -7603302740899862641023321133224898999999998739799835022899728999--6299999999999
Q gi|254780602|r  314 -GIRYMIPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGHGPSIRIS--YAVSDAILEEACV  390 (400)
Q Consensus       314 -g~~~~~p~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~iRis--~~~~~e~l~~al~  390 (400)
                       -++-++..| ..+=+++..         .. ..+.+.... +++.|++|.+-.    +.=+|+.  +..++|.|+++++
T Consensus       332 ~l~k~VRG~G-LmlG~e~~~---------~~-~~a~~~~~~-a~~~GlLv~~Ag----~~v~Rf~PPL~i~~e~i~~~~~  395 (402)
T TIGR00707       332 DLIKEVRGKG-LMLGIELEA---------PS-VAAKDIVKE-AREKGLLVNTAG----PKVLRFVPPLIITEEEIDEAVD  395 (402)
T ss_pred             CCEEEEECCE-EEEEEEECC---------CC-CCHHHHHHH-HHHCCCEEECCC----CCEEEECCCCCCCHHHHHHHHH
T ss_conf             7401532312-346556427---------86-558999999-984892688178----8706615786445889999999


Q ss_pred             HHHHHHH
Q ss_conf             9999998
Q gi|254780602|r  391 RIKRFCH  397 (400)
Q Consensus       391 rl~~~l~  397 (400)
                      +|++.|+
T Consensus       396 ~l~~~~~  402 (402)
T TIGR00707       396 ALEEAIE  402 (402)
T ss_pred             HHHHHHC
T ss_conf             9999829


No 272
>PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional
Probab=99.34  E-value=3.8e-11  Score=87.92  Aligned_cols=348  Identities=17%  Similarity=0.162  Sum_probs=167.0

Q ss_pred             CCCCEEECCCCCC--CCC-CCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCC---CCCCCCCC
Q ss_conf             6997266565897--498-89999999999983887569987789899999999864210133332233---23345433
Q gi|254780602|r   29 KGIDVLCLTAGEP--DFD-MPENVKYAVVRAMERGETKYTAVAGISPLREAIVEKFRRDNDLHYTSDQI---IVGTGAKH  102 (400)
Q Consensus        29 ~g~~ii~l~~G~p--~~~-~p~~i~~a~~~al~~~~~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~e~I---~it~G~~~  102 (400)
                      .|+..+|+..|.-  .+. -.|.|.+|+++.++.+.+-++. .-..+.+.++|+.+.+....  ..+.+   +.++++++
T Consensus        51 dG~~yLD~~sg~~~~~lGH~~p~v~~Ai~~ql~~~~~~~~~-~~~~~~~~~lae~L~~~~p~--~~~~~~~~F~~~SGSE  127 (454)
T PRK06931         51 EGNEYLDCLAGAGTLALGHNHPAVMQSIQDVLDSGLPLHTL-DLTTPLKDAFSEELLSFLPG--EKDEYCLQFTGPSGAD  127 (454)
T ss_pred             CCCEEEEECCCHHHHHHCCCCHHHHHHHHHHHHHCCCCEEC-CCCCHHHHHHHHHHHHHCCC--CCCCEEEEECCCCHHH
T ss_conf             88999891631775546179599999999998628871127-76867999999999984776--5672489973897489


Q ss_pred             CCCCCCCCCC-CCC-CCCCCCCCCCCCCCCCC-CCCC--------------CCCCCCCCCCCCCCCC----HHHHH----
Q ss_conf             3322222223-322-32222333323222222-2222--------------2222222222232221----03331----
Q gi|254780602|r  103 VIFNALMATV-NMG-DEVLIPRPYWVSYPDMV-ALCG--------------GIPVFVDTQQDDNFQV----SPEKL----  157 (400)
Q Consensus       103 ~l~~~~~~~~-~~G-d~Vlv~~P~y~~y~~~~-~~~g--------------~~~~~v~~~~~~~~~~----d~~~l----  157 (400)
                      |+..++...- ..| ..|+...-+|-.-...+ ...|              ...+++|-.....|..    +.+.+    
T Consensus       128 AvE~AlKlAr~~tgR~~iis~~~sYHG~T~gals~tg~~~~~~~~~~l~p~~~~~p~p~~~r~p~~~~~~~~~~~~~~~~  207 (454)
T PRK06931        128 AVEAAIKLAKTYTGRSNVISFSGGYHGMTHGALSLTGNLSAKNAVNGLMPGVQFMPYPHEYRCPLGIGGEAGVKALTYYF  207 (454)
T ss_pred             HHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf             99999999876069981999806889974335311079652225688899966807975235766776233699999999


Q ss_pred             HCC---CC---CCCCCEEECCC-CCCCCCC-CCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCC-CCCCCCCCC
Q ss_conf             000---12---21220121135-4210000-123333211122333332011101221100000122332-221112333
Q gi|254780602|r  158 EQA---IT---PKTKWLFLNSP-SNPSGVV-YSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSN-IVNVEPSLY  228 (400)
Q Consensus       158 ~~~---i~---~~~k~i~l~nP-~NPTG~v-~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s-~~~~~~~~~  228 (400)
                      ++.   +.   .++-++++ -| +.=.|.+ .+++-+++|-++| ++||+++|.||+...+.=.|.-+.. -..+.|+  
T Consensus       208 ~~~i~~~~~~~~~~AAvii-EPiqg~gG~~~~p~~yl~~lr~lc-~~~gillI~DEV~tGfGRTG~~fa~e~~gv~PD--  283 (454)
T PRK06931        208 ENFIEDVESGVVKPAAVIL-EAIQGEGGVVPAPVSWLQKIREVT-QKHGILLIVDEVQAGFARSGKMFAFEHAGIEPD--  283 (454)
T ss_pred             HHHHHHHHHCCCCEEEEEE-ECCCCCCCCCCCCHHHHHHHHHHH-HHCCEEEEECCCCCCCCCCCCCCHHCCCCCCCC--
T ss_conf             9999999706887259999-476688897618889988999875-116818995034437786778412102588989--


Q ss_pred             CEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCHH
Q ss_conf             22574146544322344544422110122687531001222332222222222223467--6432222221100000002
Q gi|254780602|r  229 ERTLVVNGVSKAYAMTGLRIGYAAGALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGP--QDFVVNNRKIFEYRRDLCV  306 (400)
Q Consensus       229 ~~~i~~~S~SK~~~~~G~RiG~~v~~~~li~~l~~~~~~~~~~~~~~~q~a~~~~l~~~--~~~~~~~~~~~~~~r~~~~  306 (400)
                         |+  +++|.++ .|+-+|.++..+. ++.+.......+.+.+.+...++.+.|+.-  ++.++    ..+++-+++.
T Consensus       284 ---Ii--~~gKglg-gG~P~a~~~~~~~-~~~~~~~~h~~T~~Gnpla~Aaala~L~~i~~e~l~~----~~~~~G~~l~  352 (454)
T PRK06931        284 ---IV--VMSKAVG-GGLPLAVLGIKKE-FDAWQPAGHTGTFRGNQLAMATGLATLKILRDENLAQ----NAQERGEWLT  352 (454)
T ss_pred             ---EE--EEHHHHC-CCCCEEEEEEHHH-HCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHH----HHHHHHHHHH
T ss_conf             ---60--0215324-8885489987555-5246788866456898478899999999998624999----9999999999


Q ss_pred             HHHHC----CCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHH---HHHHCCEEEECCCCCCCCCEEEEE--
Q ss_conf             45530----477603302740899862641023321133224898999999---998739799835022899728999--
Q gi|254780602|r  307 AQLQG----VPGIRYMIPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNG---LLEIEKVAVVQGSSFGHGPSIRIS--  377 (400)
Q Consensus       307 ~~L~~----~~g~~~~~p~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~---Ll~~~gV~v~pG~~Fg~~~~iRis--  377 (400)
                      +.|++    .|.+.=++..| +++=+++-+........+. ...+.+++..   .+.+.|+++.|+..  ..+.+|++  
T Consensus       353 ~~L~~l~~~~p~V~dVRG~G-L~~giElv~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~Gll~~~~g~--~~nvlr~~PP  428 (454)
T PRK06931        353 AALRELSKEYPCIGNVRGRG-LMIGIEIVDERKPADATGS-YPADGELAAAIQKACFNNKLLLERGGR--NGNVVRLLCP  428 (454)
T ss_pred             HHHHHHHHCCCCEEEECCCC-EEEEEEEEECCCCCCCCCC-CCCCHHHHHHHHHHHHHCCCEEEECCC--CCCEEEEECC
T ss_conf             99999987099888631374-4899998006764322355-666689999999999978968954689--9998999799


Q ss_pred             EECCHHHHHHHHHHHHHHHHH
Q ss_conf             629999999999999999986
Q gi|254780602|r  378 YAVSDAILEEACVRIKRFCHS  398 (400)
Q Consensus       378 ~~~~~e~l~~al~rl~~~l~~  398 (400)
                      +..+++++++++++|++.++.
T Consensus       429 L~it~~eid~~l~~l~~al~e  449 (454)
T PRK06931        429 LNITQAECEEFIKRFKQAVAE  449 (454)
T ss_pred             CCCCHHHHHHHHHHHHHHHHH
T ss_conf             016899999999999999999


No 273
>COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism]
Probab=99.34  E-value=5.3e-12  Score=93.15  Aligned_cols=341  Identities=17%  Similarity=0.183  Sum_probs=184.9

Q ss_pred             CCCEEECCCCCCC--C-CCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             9972665658974--9-889999999999983887569987789899999999864210133332233233454333322
Q gi|254780602|r   30 GIDVLCLTAGEPD--F-DMPENVKYAVVRAMERGETKYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFN  106 (400)
Q Consensus        30 g~~ii~l~~G~p~--~-~~p~~i~~a~~~al~~~~~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l~~  106 (400)
                      |+.-|++..|.-.  + -.+|.|++|+++.+++|. .|+.+. ..|  -.+|+.+.++.+   +.|.|-++|.+++|-..
T Consensus        52 Gn~YIDy~~~~Gp~ilGH~~p~V~~Av~~~l~~G~-~fg~Pt-e~E--i~~Aell~~~~p---~~e~vrfvnSGTEAtms  124 (432)
T COG0001          52 GNEYIDYVLGWGPLILGHAHPAVVEAVQEQLERGL-SFGAPT-ELE--VELAELLIERVP---SIEKVRFVNSGTEATMS  124 (432)
T ss_pred             CCEEEEHHCCCCCCCCCCCCHHHHHHHHHHHHHCC-CCCCCC-HHH--HHHHHHHHHHCC---CCCEEEEECCHHHHHHH
T ss_conf             98754013057650008898799999999997267-778997-789--999999998658---65089986064089999


Q ss_pred             CC---CCCCCCCCCCCCCCCCCCCCCCCCCC-C--CCCCCC------CCCCCC-C----CCCCHHHHHHCCCCCC---CC
Q ss_conf             22---22233223222233332322222222-2--222222------222222-3----2221033310001221---22
Q gi|254780602|r  107 AL---MATVNMGDEVLIPRPYWVSYPDMVAL-C--GGIPVF------VDTQQD-D----NFQVSPEKLEQAITPK---TK  166 (400)
Q Consensus       107 ~~---~~~~~~Gd~Vlv~~P~y~~y~~~~~~-~--g~~~~~------v~~~~~-~----~~~~d~~~l~~~i~~~---~k  166 (400)
                      ++   ++++.. |.|+..+=+|-.+...... +  |..-..      +|-... +    .| =|++.+++++...   .-
T Consensus       125 AiRlARa~TgR-~kIikF~G~YHG~~D~~lv~agsg~~t~g~p~s~Gvp~~~a~~ti~~~y-ND~~al~~~~~~~g~~IA  202 (432)
T COG0001         125 AIRLARAYTGR-DKIIKFEGCYHGHSDSLLVKAGSGAATLGSPSSPGVPADVAKHTLVLPY-NDLEALEEAFEEYGDDIA  202 (432)
T ss_pred             HHHHHHHHHCC-CEEEEECCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCHHHHCCEEEECC-CCHHHHHHHHHHCCCCEE
T ss_conf             99999876479-7599972888887118784267675557899999997345344788457-999999999987689679


Q ss_pred             CEEECCC--CCCCCCCCCC-CCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCC
Q ss_conf             0121135--4210000123-333211122333332011101221100000122332221112333225741465443223
Q gi|254780602|r  167 WLFLNSP--SNPSGVVYSQ-NRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAM  243 (400)
Q Consensus       167 ~i~l~nP--~NPTG~v~s~-~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~~  243 (400)
                      +|+ +-|  .| -|.+.+. +.+++|-++| +++++++|.||+...|...-.-......+.|+       +.++.|..+ 
T Consensus       203 aVI-vEPv~gn-~g~i~p~~~Fl~~Lr~lt-~e~G~lLI~DEViTGFR~~~gGaq~~~gi~PD-------lttlGKiIG-  271 (432)
T COG0001         203 AVI-VEPVAGN-MGVVPPEPGFLEGLRELT-EEHGALLIFDEVITGFRVALGGAQGYYGVEPD-------LTTLGKIIG-  271 (432)
T ss_pred             EEE-ECCCCCC-CCCCCCCHHHHHHHHHHH-HHCCCEEEEECCHHHCCCCCCCCCCCCCCCCC-------HHHHHHHHC-
T ss_conf             999-5424678-898989878999999999-97194899862212045477642010086963-------332224404-


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHC---CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCC---CCCEE
Q ss_conf             4454442211012268753100---12223322222222222234676432222221100000002455304---77603
Q gi|254780602|r  244 TGLRIGYAAGALSLIKSMIVLQ---GQQTSGACSIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQGV---PGIRY  317 (400)
Q Consensus       244 ~G~RiG~~v~~~~li~~l~~~~---~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~~~~~L~~~---~g~~~  317 (400)
                      .|+-+|...+.+++++.+....   +..+.+-+.+...|..+.|+..++ .+...+.+.+.-+.+.+.|+++   .|+.+
T Consensus       272 GGlP~ga~gGr~eiM~~~~p~g~vyqaGT~sgnplamaAG~atl~~l~~-~~~~y~~l~~~~~~L~~gl~~~~~~~g~~~  350 (432)
T COG0001         272 GGLPIGAFGGRAEIMEQLAPLGPVYQAGTLSGNPLAMAAGLATLEELMT-EEGVYERLDALGERLAEGLRAAAERHGIPL  350 (432)
T ss_pred             CCCCEEEECCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHHHHHHCCCE
T ss_conf             7752011256999996327788764567778868999999999999873-651899999999999999999999839985


Q ss_pred             EE-CCCCEEE-EEECCCCCCCCCCCCCCCCCH----HHHHHHHHHHCCEEEECCCCCCCCCEEEEEEECCHHHHHHHHHH
Q ss_conf             30-2740899-862641023321133224898----99999999873979983502289972899962999999999999
Q gi|254780602|r  318 MI-PDGAFYL-YPSCQDLIGKKSPSGDVIRTD----LDFVNGLLEIEKVAVVQGSSFGHGPSIRISYAVSDAILEEACVR  391 (400)
Q Consensus       318 ~~-p~g~~y~-~~~~~~~~~~~~~~~~~~~~~----~~~~~~Ll~~~gV~v~pG~~Fg~~~~iRis~~~~~e~l~~al~r  391 (400)
                      .. -.|++|- +..-.+..+..    +...++    ..|...|| +.||.+.|.. |  +. .=+|.+.++++++..++.
T Consensus       351 ~v~~~gsm~~i~F~~~~~~n~~----da~~sd~~~~~~~~~~~l-~~GV~l~ps~-~--ea-~flS~ahte~di~~~~~a  421 (432)
T COG0001         351 TVNRVGSMFGIFFTEEGVRNYA----DAKRSDVERFAKFFHHLL-NRGVYLAPSQ-F--EA-GFLSTAHTEEDIDRTLEA  421 (432)
T ss_pred             EEEEECCEEEEEECCCCCCCHH----HHHHHCHHHHHHHHHHHH-HCCCCCCCCC-C--CC-EEEECCCCHHHHHHHHHH
T ss_conf             8862042589995589988899----998635699999999999-6882347755-5--54-552004689999999999


Q ss_pred             HHHHHHHCC
Q ss_conf             999998609
Q gi|254780602|r  392 IKRFCHSLQ  400 (400)
Q Consensus       392 l~~~l~~l~  400 (400)
                      +.+.++.+.
T Consensus       422 ~~~~~~~~~  430 (432)
T COG0001         422 ADEAFKELA  430 (432)
T ss_pred             HHHHHHHHH
T ss_conf             999999863


No 274
>TIGR01326 OAH_OAS_sulfhy O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase; InterPro: IPR006235   This family of sequences is a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine sulfhydrylase (OAH, 2.5.1.49 from EC) and O-acetylserine sulfhydrylase (OAS, 2.5.1.47 from EC). An alternate name for OAH sulfhydrylase is homocysteine synthase.; GO: 0016765 transferase activity transferring alkyl or aryl (other than methyl) groups, 0006520 amino acid metabolic process.
Probab=99.34  E-value=9e-13  Score=97.86  Aligned_cols=267  Identities=19%  Similarity=0.205  Sum_probs=161.1

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----CCCCCCCCCCCCCCCCCCCCCCCCCCH-HHHHHCCCCCCCCCEE
Q ss_conf             23345433332222222332232222333323----222222222222222222222322210-3331000122122012
Q gi|254780602|r   95 IVGTGAKHVIFNALMATVNMGDEVLIPRPYWV----SYPDMVALCGGIPVFVDTQQDDNFQVS-PEKLEQAITPKTKWLF  169 (400)
Q Consensus        95 ~it~G~~~~l~~~~~~~~~~Gd~Vlv~~P~y~----~y~~~~~~~g~~~~~v~~~~~~~~~~d-~~~l~~~i~~~~k~i~  169 (400)
                      +.++.++.|+..+++.++..||.|+-..--|.    .+...++.+|.++.+++-+       | +|+++++|++|||+||
T Consensus        76 l~~ASG~AA~~~Ailnla~AGDnIVsS~~LYGGTynLF~~TlkrlGIevrFvd~d-------d~pe~~~k~id~nTKAvf  148 (434)
T TIGR01326        76 LAVASGQAAITYAILNLAQAGDNIVSSSYLYGGTYNLFKHTLKRLGIEVRFVDGD-------DDPEELEKAIDENTKAVF  148 (434)
T ss_pred             HHHCHHHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHCCEEEEEECCC-------CCHHHHHHHCCCCCEEEE
T ss_conf             2101157999999999972698269806444225789999555448148872788-------887899976066751898


Q ss_pred             ECCCCCCCCCCCCCCCCCCCCCCCCCCC--CCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCC
Q ss_conf             1135421000012333321112233333--20111012211000001223322211123332257414654432234454
Q gi|254780602|r  170 LNSPSNPSGVVYSQNRLRALADVLVRNP--HVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTGLR  247 (400)
Q Consensus       170 l~nP~NPTG~v~s~~~l~~i~~~~a~~~--~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~~~G~R  247 (400)
                      +=+=.||-..|.+   +++|+++ |+++  +|.+|+|..-..=   |.=..|+-   -++   -|+++|+||..+-=|.=
T Consensus       149 ~EtIgNP~~~v~D---ie~~a~~-Ah~~PhgvPliVDNT~atp---GYL~rPi~---hGA---DIVvhSaTK~iGGHG~a  215 (434)
T TIGR01326       149 AETIGNPALNVPD---IEAVAEV-AHAHPHGVPLIVDNTFATP---GYLCRPID---HGA---DIVVHSATKYIGGHGTA  215 (434)
T ss_pred             EECCCCCCCCCCC---HHHHHHH-HHHCCCCCEEEEECCCCCC---CCCCCHHH---CCC---CEEEEEECCCCCCCEEE
T ss_conf             4012387767678---5899999-9867898348874786876---41006456---498---67996100101263146


Q ss_pred             CCCCCCHHHHH-HHHH---HHCC------------C-CCCC--------CCCCCCCCCCCCCCCC-------CCCC----
Q ss_conf             44221101226-8753---1001------------2-2233--------2222222222223467-------6432----
Q gi|254780602|r  248 IGYAAGALSLI-KSMI---VLQG------------Q-QTSG--------ACSIAQWAAVEALNGP-------QDFV----  291 (400)
Q Consensus       248 iG~~v~~~~li-~~l~---~~~~------------~-~~~~--------~~~~~q~a~~~~l~~~-------~~~~----  291 (400)
                      +|=++.+..-. +...   |...            + ...+        ...+.-++=+++|++.       ..|+    
T Consensus       216 iGG~ivD~G~FndW~~~~gkFP~f~~PdpsYHGl~f~E~~g~~~~~G~~~~Afi~~~Rv~~LRD~Gaa~sPFnAFLllQG  295 (434)
T TIGR01326       216 IGGVIVDGGKFNDWANNPGKFPLFTTPDPSYHGLVFTETFGEFEGLGLGNIAFIVKARVQLLRDLGAALSPFNAFLLLQG  295 (434)
T ss_pred             EEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCHHEEEEEEEEECHHCCCCCCHHHHHHHHHH
T ss_conf             50478826755630147874777888888658712653155757778500000344467422100334017899999986


Q ss_pred             -CC---CCCCCCCCCCCHHHHHHCCCCCEEEE-C----------------CCCEEEEE--ECCCCCCCCCCCCCCCCCHH
Q ss_conf             -22---22211000000024553047760330-2----------------74089986--26410233211332248989
Q gi|254780602|r  292 -VN---NRKIFEYRRDLCVAQLQGVPGIRYMI-P----------------DGAFYLYP--SCQDLIGKKSPSGDVIRTDL  348 (400)
Q Consensus       292 -~~---~~~~~~~~r~~~~~~L~~~~g~~~~~-p----------------~g~~y~~~--~~~~~~~~~~~~~~~~~~~~  348 (400)
                       |-   ..++=.+|...+.+.|++.|.+.++. |                .|-+=.-+  .+.+.    ......+-|+.
T Consensus       296 LETLsLR~ERH~~NA~kVA~fL~~Hp~V~wV~YPGL~s~~~h~lAkkYl~~G~~G~vLsFe~kGG----~ea~~kfidal  371 (434)
T TIGR01326       296 LETLSLRMERHVENALKVAEFLEAHPKVAWVNYPGLASHPHHALAKKYLPKGLFGAVLSFEIKGG----REAGKKFIDAL  371 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCC----HHHHHHHHHHH
T ss_conf             66787678888899999999972788445134888788753788998741794267874132182----88999998776


Q ss_pred             HHHHHHH---HHCCEEEECCCC------------CC-CCCEEEEEEEC-CHHHH
Q ss_conf             9999999---873979983502------------28-99728999629-99999
Q gi|254780602|r  349 DFVNGLL---EIEKVAVVQGSS------------FG-HGPSIRISYAV-SDAIL  385 (400)
Q Consensus       349 ~~~~~Ll---~~~gV~v~pG~~------------Fg-~~~~iRis~~~-~~e~l  385 (400)
                      +++.+|+   +.+-+++-|-+.            =| .++.||+|++. ..|+|
T Consensus       372 kL~s~lANvGDaksLvIHPAsTTH~QL~e~Eq~~AGVt~~~iRlSvGIE~iDDI  425 (434)
T TIGR01326       372 KLASHLANVGDAKSLVIHPASTTHQQLSEEEQLKAGVTPGLIRLSVGIENIDDI  425 (434)
T ss_pred             HHHHHHHHHHHHHHEEECCCCCCCCCCCHHHHHHCCCCCCEEEEEEECCCHHHH
T ss_conf             778776554201110334775666657979998538975707898721876789


No 275
>PRK08555 consensus
Probab=99.33  E-value=2.6e-11  Score=88.97  Aligned_cols=346  Identities=13%  Similarity=0.108  Sum_probs=172.8

Q ss_pred             CCCCEEECCCCC--CCCC-CCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             699726656589--7498-8999999999998388756998778989999999986421013333223323345433332
Q gi|254780602|r   29 KGIDVLCLTAGE--PDFD-MPENVKYAVVRAMERGETKYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIF  105 (400)
Q Consensus        29 ~g~~ii~l~~G~--p~~~-~p~~i~~a~~~al~~~~~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l~  105 (400)
                      .|+..||+..|.  ..+. -.|.|.+|+++.++.-. .++...-..+.+..+|+.+.+...-+. .+.|.++++++++..
T Consensus        50 dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~ql~~l~-~~~~~~~~~~~~~~lae~L~~~~p~~~-~~~v~f~~SGSEAvE  127 (443)
T PRK08555         50 DGNVYLDFSSGIGVNNLGHSHPRVIEAVEEQLHKLW-HAAGTDFYNEYQVELAKKLVEIAPGDF-EKKVFFSNSGTEANE  127 (443)
T ss_pred             CCCEEEEECCCHHHHHHCCCCHHHHHHHHHHHHHCC-CCCCCCCCCHHHHHHHHHHHHHCCCCC-CCEEEEECCHHHHHH
T ss_conf             889999905327642124897999999999986176-746564368899999999998577565-655998087788999


Q ss_pred             CCCCCCC-CCC-CCCCCCCCCCCCCCC-CCCCCC---------------CCCCCCCCCCCCCCCC----H--------HH
Q ss_conf             2222223-322-322223333232222-222222---------------2222222222232221----0--------33
Q gi|254780602|r  106 NALMATV-NMG-DEVLIPRPYWVSYPD-MVALCG---------------GIPVFVDTQQDDNFQV----S--------PE  155 (400)
Q Consensus       106 ~~~~~~~-~~G-d~Vlv~~P~y~~y~~-~~~~~g---------------~~~~~v~~~~~~~~~~----d--------~~  155 (400)
                      .+++..- ..| ..|+...-+|-.... .....|               ...+++|-...+-|..    +        .+
T Consensus       128 ~AiklAr~~tgr~~ii~~~~~yHG~t~g~~s~t~~~~~~~~~~~p~~~~~~~vp~p~~~r~p~~~~~~~~~~~~~~~~~~  207 (443)
T PRK08555        128 AALKIAKWYTGRKMFIAFIGAFHGRTQGSLSLTASKPVQRSGFFPTMPGVEHVPYPNPYRNPWGIDGYENPDELVNRVID  207 (443)
T ss_pred             HHHHHHHHHCCCCEEEEEECCCCCCCCCCEEEECCCCHHCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf             99999887379988999958707897211687258501104778999993681688622464456665699999999999


Q ss_pred             HHHCCC-----CC-CCCCEEECCC-CCCCCC-CCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC-CCCCCCCC
Q ss_conf             310001-----22-1220121135-421000-012333321112233333201110122110000012233-22211123
Q gi|254780602|r  156 KLEQAI-----TP-KTKWLFLNSP-SNPSGV-VYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFS-NIVNVEPS  226 (400)
Q Consensus       156 ~l~~~i-----~~-~~k~i~l~nP-~NPTG~-v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~-s~~~~~~~  226 (400)
                      .+++.+     .+ +..++++ -| ..-.|. +.+++-+++|.++| +++|+++|.||++..|.=.|.-+. .-..+.|+
T Consensus       208 ~ie~~i~~~~~~~~~iAavi~-EPi~g~gG~~~pp~~yl~~l~~lc-~~~gillI~DEV~tGfGRtG~~fa~e~~gv~PD  285 (443)
T PRK08555        208 YIEEYLFEHYVPPEEVAGIFF-EPIQGEGGYVVPPKNFFKELKKLA-DKYGILLIDDEVQMGLGRTGKMFAIEHFGVEPD  285 (443)
T ss_pred             HHHHHHHHHCCCCCCEEEEEE-ECCCCCCCCCCCCHHHHHHHHHHH-HHCCCEEECCCCCCCCCCCCCCCEECCCCCCCC
T ss_conf             999999862579898899999-587688898758878878999999-974946963544127870247412316888998


Q ss_pred             CCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf             33225741465443223445444221101226875310012223322222222222234676432222221100000002
Q gi|254780602|r  227 LYERTLVVNGVSKAYAMTGLRIGYAAGALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCV  306 (400)
Q Consensus       227 ~~~~~i~~~S~SK~~~~~G~RiG~~v~~~~li~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~~~  306 (400)
                           |+  +++|..+ .|+-+|.++..+++.......+. .+.+.+.+...++.+.|+--++   +..+..+++-+++.
T Consensus       286 -----iv--~~gKgl~-~G~Pl~av~~~~e~~~~~~~~h~-~T~~gnpla~aaa~a~L~~i~e---~l~~~~~~~g~~l~  353 (443)
T PRK08555        286 -----II--TLAKALG-GGIPIGATIFRADLDFKKPGLHS-NTFGGNALASAAGLAVIEEIKE---GLLENVQKLGKYFR  353 (443)
T ss_pred             -----EE--EECCCCC-CCCCEEEEEEHHHHCCCCCCCCC-CCCCCCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
T ss_conf             -----89--9774244-88750899982453557777737-6888548999999999999997---79999999999999


Q ss_pred             HHHHCC----CCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCCCCEEEEE--EEC
Q ss_conf             455304----77603302740899862641023321133224898999999998739799835022899728999--629
Q gi|254780602|r  307 AQLQGV----PGIRYMIPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGHGPSIRIS--YAV  380 (400)
Q Consensus       307 ~~L~~~----~g~~~~~p~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~iRis--~~~  380 (400)
                      +.|+++    +.+.-++.. |+++=+++-+......+..   .....++..++ +.|+++.++.    .+.||+.  +..
T Consensus       354 ~~L~~l~~~~~~v~dvRG~-Gl~~gielv~~~~~~~~~~---~~~~~i~~~~~-~~Gll~~~~g----~n~ir~~PPL~i  424 (443)
T PRK08555        354 ERLEELKEKYEIIGDVRGL-GLAWAIEFVKDRKTKEPNP---KLRDRVVVEAF-KRGLILLGCG----KSAIRLIPPLII  424 (443)
T ss_pred             HHHHHHHHCCCCEEEECCC-CEEEEEEEECCCCCCCCCH---HHHHHHHHHHH-HCCEEEEECC----CCEEEEECCCCC
T ss_conf             9999988619977872326-6799999823776567798---99999999999-7890997379----998999779438


Q ss_pred             CHHHHHHHHHHHHHHHHHC
Q ss_conf             9999999999999999860
Q gi|254780602|r  381 SDAILEEACVRIKRFCHSL  399 (400)
Q Consensus       381 ~~e~l~~al~rl~~~l~~l  399 (400)
                      +++++++++++|.+.|+..
T Consensus       425 t~~eid~~~~~l~~al~~V  443 (443)
T PRK08555        425 SEEEAKIGLEILEEAIKVV  443 (443)
T ss_pred             CHHHHHHHHHHHHHHHHHC
T ss_conf             8999999999999999639


No 276
>PRK05639 4-aminobutyrate aminotransferase; Provisional
Probab=99.32  E-value=7e-11  Score=86.32  Aligned_cols=343  Identities=15%  Similarity=0.137  Sum_probs=169.4

Q ss_pred             CCCCEEECCCCC--CCCC-CCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             699726656589--7498-8999999999998388756998778989999999986421013333223323345433332
Q gi|254780602|r   29 KGIDVLCLTAGE--PDFD-MPENVKYAVVRAMERGETKYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIF  105 (400)
Q Consensus        29 ~g~~ii~l~~G~--p~~~-~p~~i~~a~~~al~~~~~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l~  105 (400)
                      +|+..||+..|-  ..+. -.|.|.+|+++.++.-.+.+.. ....+....+|+.+.+...  ..-+.+++++++++|..
T Consensus        51 dG~~ylD~~~g~~~~~lGH~~p~i~~Ai~~Q~~~l~~~~~~-~~~~~~~~~lae~L~~~~P--~~~~~v~f~~sGSEAvE  127 (457)
T PRK05639         51 DGNVFIDFLAGAAAASTGYSHPKLVKAVKEQVELIQHSMIG-YTHSERAIRVAEKLVKISP--IKNSKVIFGLSGSDAVD  127 (457)
T ss_pred             CCCEEEECCHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCC-CCCCHHHHHHHHHHHHHCC--CCCCEEEEECCHHHHHH
T ss_conf             96988880541886676179699999999998644476577-7488799999999997589--88775998186589999


Q ss_pred             CCCCCC-CCCC-CCCCCCCCCCCCCCCC-CCCCC--------CC-----CCCCCCC--CCCCCCC----H--------HH
Q ss_conf             222222-3322-3222233332322222-22222--------22-----2222222--2232221----0--------33
Q gi|254780602|r  106 NALMAT-VNMG-DEVLIPRPYWVSYPDM-VALCG--------GI-----PVFVDTQ--QDDNFQV----S--------PE  155 (400)
Q Consensus       106 ~~~~~~-~~~G-d~Vlv~~P~y~~y~~~-~~~~g--------~~-----~~~v~~~--~~~~~~~----d--------~~  155 (400)
                      .++..- ...| ..|+...-+|-..... ....+        ..     +..+|..  ...-|.+    +        .+
T Consensus       128 ~AiKlAr~~t~r~~Iis~~~~yHG~T~ga~s~~~~~~~~~~~~~~~~~~~~~~p~p~~~r~~~~~~~~~~~~~~~~~~~~  207 (457)
T PRK05639        128 MAIKVSKFSTRRPWILAFIGAYHGQTLGATSVASFQVSQKRGYSPLMPNVFWLPYPNPYRNIWGINGYEEPNELINRVLD  207 (457)
T ss_pred             HHHHHHHHCCCCCEEEEEECCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf             99999864259886999935779865140001468754456888889984781798633453356763378999999999


Q ss_pred             HHHCCCC------CCCCCEEECCC-CCCCCCCC-CCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC-CCCCCCCC
Q ss_conf             3100012------21220121135-42100001-2333321112233333201110122110000012233-22211123
Q gi|254780602|r  156 KLEQAIT------PKTKWLFLNSP-SNPSGVVY-SQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFS-NIVNVEPS  226 (400)
Q Consensus       156 ~l~~~i~------~~~k~i~l~nP-~NPTG~v~-s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~-s~~~~~~~  226 (400)
                      .+++.+.      +++-+++ .-| +.-.|.+. +++.+++|-++| +++|+++|.||+...|.=.|.-+. ....+.|+
T Consensus       208 ~le~~i~~~~~~~~~iAavi-~EPiqg~gG~~~~~~~yl~~lr~lc-~~~gillI~DEV~tGfGRtG~~fa~e~~gv~PD  285 (457)
T PRK05639        208 YLENYVFSHVVPPDEVAALF-AEPIQGDAGIVVPPENFFKELKKLL-NELGILLVMDEVQTGIGRTGKWFASEWFSVKPD  285 (457)
T ss_pred             HHHHHHHHHCCCCCCEEEEE-EECCCCCCCCCCCCHHHHHHHHHHH-HHCCCEEEEECCCCCCCCCCCHHHHHCCCCCCC
T ss_conf             99999986146889789999-8276688798628989988999999-763986873103227762565456643799999


Q ss_pred             CCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCC
Q ss_conf             3322574146544322344544422110122687531001222332222222222223467--64322222211000000
Q gi|254780602|r  227 LYERTLVVNGVSKAYAMTGLRIGYAAGALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGP--QDFVVNNRKIFEYRRDL  304 (400)
Q Consensus       227 ~~~~~i~~~S~SK~~~~~G~RiG~~v~~~~li~~l~~~~~~~~~~~~~~~q~a~~~~l~~~--~~~~~~~~~~~~~~r~~  304 (400)
                           |++  ++|.++ .|+-++.+++.+++++....... .+.+.+.+...++.+.|+.-  ++.++.    -++.-++
T Consensus       286 -----ii~--~gKgl~-~G~plsav~~~~~i~~~~~g~~~-~T~~gnpla~Aaa~a~L~~i~~~~l~~~----a~~~g~~  352 (457)
T PRK05639        286 -----MII--FGKGVA-SGMGLSGVIGRKEIMDITSGSAL-LTPAANPVISAAAEATLEIIEEENLLKN----ALEVGNF  352 (457)
T ss_pred             -----EEE--ECCHHC-CCCCCEEEEECHHHHHHHCCCCC-CCCCCCHHHHHHHHHHHHHHHHCCHHHH----HHHHHHH
T ss_conf             -----999--772210-79870799984887754057655-5788652999999999999996559999----9999999


Q ss_pred             HHHHHHCC----CCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCCCCEEEEE--E
Q ss_conf             02455304----77603302740899862641023321133224898999999998739799835022899728999--6
Q gi|254780602|r  305 CVAQLQGV----PGIRYMIPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGHGPSIRIS--Y  378 (400)
Q Consensus       305 ~~~~L~~~----~g~~~~~p~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~iRis--~  378 (400)
                      +.+.|+++    +.+.-++.. |+++=+++.+......+     ....+++.++ .+.|+++.+...+  ++.||+.  +
T Consensus       353 l~~~L~~L~~~~~~v~dVRG~-GL~~giel~~~~~~~~~-----~~~~~v~~~~-~~~Gll~~~~g~~--~nvirl~PPL  423 (457)
T PRK05639        353 IMKRLEEMKEVFEIIGDVRGK-GLMIGVEIVKENGRPDP-----EMTGKICWRA-FELGLILPSYGMF--GNVIRITPPL  423 (457)
T ss_pred             HHHHHHHHHHHCCCEEEECCC-CCEEEEEEECCCCCCCH-----HHHHHHHHHH-HHCCCEEECCCCC--CCEEEEECCE
T ss_conf             999999988638975655037-80999999437899899-----9999999999-9679688158999--9989997893


Q ss_pred             ECCHHHHHHHHHHHHHHHHH
Q ss_conf             29999999999999999986
Q gi|254780602|r  379 AVSDAILEEACVRIKRFCHS  398 (400)
Q Consensus       379 ~~~~e~l~~al~rl~~~l~~  398 (400)
                      ..+++++++++++|.+.++.
T Consensus       424 ~it~~eid~~~~il~~al~e  443 (457)
T PRK05639        424 VLTKEVAEKGLEIIERAIKD  443 (457)
T ss_pred             ECCHHHHHHHHHHHHHHHHH
T ss_conf             16899999999999999999


No 277
>cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits. This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life.
Probab=99.31  E-value=3.7e-12  Score=94.12  Aligned_cols=288  Identities=16%  Similarity=0.177  Sum_probs=161.5

Q ss_pred             HHHHHHHHHHCCC----CEEECCCCCCCCCCCHHHHHHHHHH-HHCCCCCCCC--CCCCHHHHHHHHHHHHHHCCCCCCC
Q ss_conf             9999999998699----7266565897498899999999999-8388756998--7789899999999864210133332
Q gi|254780602|r   19 AAQRVRDLRSKGI----DVLCLTAGEPDFDMPENVKYAVVRA-MERGETKYTA--VAGISPLREAIVEKFRRDNDLHYTS   91 (400)
Q Consensus        19 ~~~~~~~~~~~g~----~ii~l~~G~p~~~~p~~i~~a~~~a-l~~~~~~Y~~--~~G~~~lR~aia~~~~~~~g~~~~~   91 (400)
                      +....+.+.+++.    .++.++.|-.++-+|..+...+.+. .-+..+.|.+  +||..+.--.....+....|+++..
T Consensus         4 ~~rh~~~L~~kN~~~~~~~~flG~g~y~h~~p~~v~~~~~r~ef~t~ytpyq~E~sQG~Lq~~~e~Qs~i~eLtGmdv~n   83 (398)
T cd00613           4 VLRHLKRLASKNKALDQSMSFLGSGTYKHNPPAVIKRNILENEFYTAYTPYQPEISQGRLQALFELQTMLCELTGMDVAN   83 (398)
T ss_pred             HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf             99999999966768686715674602562338898987386767146999896886999999999999999986888356


Q ss_pred             CCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----CCCCCCCCCCCCCCCCCHHHHHHCCCCCC
Q ss_conf             23323345433---332222222332232222333323222222222----22222222222232221033310001221
Q gi|254780602|r   92 DQIIVGTGAKH---VIFNALMATVNMGDEVLIPRPYWVSYPDMVALC----GGIPVFVDTQQDDNFQVSPEKLEQAITPK  164 (400)
Q Consensus        92 e~I~it~G~~~---~l~~~~~~~~~~Gd~Vlv~~P~y~~y~~~~~~~----g~~~~~v~~~~~~~~~~d~~~l~~~i~~~  164 (400)
                      -  -+-.|++.   +..+++..--.+.++|++++-..|.+...++.+    |.+++.++.++++  .+|+++|+++++++
T Consensus        84 a--Sl~d~a~A~aEa~~ma~~~~~~~r~~vlv~~~~hp~~~~v~~t~~~~~g~~i~~v~~~~~G--~~d~~~l~~~~~~~  159 (398)
T cd00613          84 A--SLQDEATAAAEAAGLAAIRAYHKRNKVLVPDSAHPTNPAVARTRGEPLGIEVVEVPSDEGG--TVDLEALKEEVSEE  159 (398)
T ss_pred             C--CCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHCCCCEEEEECCCCCC--CCCHHHHHHHCCCC
T ss_conf             3--2687677999999999998626899899778778036999999861258658994266677--74658888750788


Q ss_pred             CCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCC---
Q ss_conf             22012113542100001233332111223333320111012211000001223322211123332257414654432---
Q gi|254780602|r  165 TKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAY---  241 (400)
Q Consensus       165 ~k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~---  241 (400)
                      +-++++.||| -.|.+-  +.+++|++++ ++.+.+++.|-.  .+....-+       .|+...--|+++..-|.+   
T Consensus       160 ~a~v~v~~Pn-~~G~~e--~~~~~i~~~~-h~~gal~~~~~~--~~~l~~l~-------~Pg~~GaDI~~g~~q~~g~P~  226 (398)
T cd00613         160 VAALMVQYPN-TLGVFE--DLIKEIADIA-HSAGALVYVDGD--NLNLTGLK-------PPGEYGADIVVGNLQKTGVPH  226 (398)
T ss_pred             EEEEEECCCC-CCEEEE--CCHHHHHHHH-HHCCCEEEEEEC--CHHHHCCC-------CCCCCCCCEEEECCCCCCCCC
T ss_conf             5999952799-962785--1999999999-875986999744--03531555-------710047877985251146656


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHC-C---------------------------CCCCCCCC-CCCCCCCCCC-CCCCCCC
Q ss_conf             234454442211012268753100-1---------------------------22233222-2222222223-4676432
Q gi|254780602|r  242 AMTGLRIGYAAGALSLIKSMIVLQ-G---------------------------QQTSGACS-IAQWAAVEAL-NGPQDFV  291 (400)
Q Consensus       242 ~~~G~RiG~~v~~~~li~~l~~~~-~---------------------------~~~~~~~~-~~q~a~~~~l-~~~~~~~  291 (400)
                      +..|--.|++...+++++.+-... .                           ...+|.+. +.-.++..++ ..+.+-+
T Consensus       227 ~~GGP~~G~~a~~~~l~r~lPgrivg~t~D~~G~~~~~ltlqtreqhIrRekatsnict~qal~al~a~~Y~~~lG~~GL  306 (398)
T cd00613         227 GGGGPGAGFFAVKKELVRFLPGRLVGVTKDAEGNRAFRLALQTREQHIRREKATSNICTGQALLALMAAMYIVYLGPEGL  306 (398)
T ss_pred             CCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCEEEECCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHCCCCH
T ss_conf             66887443266799877358998565047888874215441354333677752881643278999999999998488638


Q ss_pred             CCCCCCCCCCCCCHHHHHHCCCCCEEEECCCCEE
Q ss_conf             2222211000000024553047760330274089
Q gi|254780602|r  292 VNNRKIFEYRRDLCVAQLQGVPGIRYMIPDGAFY  325 (400)
Q Consensus       292 ~~~~~~~~~~r~~~~~~L~~~~g~~~~~p~g~~y  325 (400)
                      ++..+....+.+++.+.|+++++..+  +++.||
T Consensus       307 ~~va~~~~~~A~Yl~~~L~~~~~~~~--~~~~~f  338 (398)
T cd00613         307 KEIAERAHLNANYLAKRLKEVGGVLP--FNGPFF  338 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCC--CCCCEE
T ss_conf             89999999999999999986389826--899866


No 278
>TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase; InterPro: IPR010961   Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway . The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin .   The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA.   The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III.   Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) .   This entry represents 5-aminoaevulinic acid (ALA) synthase (2.3.1.37 from EC), which catalyses the first stage of tetrapyrrole biosynthesis by the C4 pathway, namely the condensation of succinyl CoA and glycine. ALA synthase is a pyridoxal-phosphate-dependent enzyme. During catalysis, glycine initially binds to the enzyme cofactor, and after condensation with succinyl CoA, CoA, carbon dioxide and 5-aminolevulinic acid are produced .; GO: 0003870 5-aminolevulinate synthase activity, 0030170 pyridoxal phosphate binding, 0033014 tetrapyrrole biosynthetic process.
Probab=99.29  E-value=2.7e-12  Score=94.99  Aligned_cols=347  Identities=15%  Similarity=0.192  Sum_probs=183.2

Q ss_pred             HHHHHHHHCCCC---HHHHHHHHHH-H------HHHCC--CCEEECCCCCCCC--CCCHHHHHHHHHHHHCCCCCC----
Q ss_conf             678898738975---8999999999-9------99869--9726656589749--889999999999983887569----
Q gi|254780602|r    3 FISNILRRVQPS---ATLVAAQRVR-D------LRSKG--IDVLCLTAGEPDF--DMPENVKYAVVRAMERGETKY----   64 (400)
Q Consensus         3 ~~s~~~~~l~~s---~~~~~~~~~~-~------~~~~g--~~ii~l~~G~p~~--~~p~~i~~a~~~al~~~~~~Y----   64 (400)
                      ++++.+++++..   -+|.-.++.+ +      ...+|  +| |-.|=+|=-+  .=.|.|++||+++++.--.|=    
T Consensus         6 ~f~~~id~~~~egrYR~F~~l~R~ag~FP~A~~~~~~g~~~d-VtVWCSNDYLGMgqHp~Vl~Am~~~~~~~GaGaGGTR   84 (427)
T TIGR01821         6 FFDKEIDKLHQEGRYRVFADLERLAGEFPFAQWHSPDGVKKD-VTVWCSNDYLGMGQHPKVLQAMHEALDKVGAGAGGTR   84 (427)
T ss_pred             HHHHHHHHHHCCCCCCCCCCHHHHHCCCCCCEEECCCCCCEE-EEEEECCCHHHCCCCHHHHHHHHHHHHHCCCCCCCCC
T ss_conf             899987654038985002243635178985134265778101-7887212132048865479889999996388998753


Q ss_pred             ---CCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCC---CCCC
Q ss_conf             ---9877898999999998642101333322332334543333222222233--2232222333323222222---2222
Q gi|254780602|r   65 ---TAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFNALMATVN--MGDEVLIPRPYWVSYPDMV---ALCG  136 (400)
Q Consensus        65 ---~~~~G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l~~~~~~~~~--~Gd~Vlv~~P~y~~y~~~~---~~~g  136 (400)
                         +...-+-+|-+++|+--+|       ..-+++|+| -=+...++.+++.  || -|+..+=  .||.+++   +..+
T Consensus        85 NIsGtn~~~v~LEaELAdLH~K-------E~ALvFtSg-yVaNda~L~tL~k~~P~-~~ifSD~--LNHASMI~GIr~S~  153 (427)
T TIGR01821        85 NISGTNIYHVELEAELADLHGK-------ESALVFTSG-YVANDATLATLAKIIPG-CVIFSDE--LNHASMIEGIRRSG  153 (427)
T ss_pred             CCCCCCHHHHHHHHHHHHHCCC-------CHHHHHHHH-HHHHHHHHHHHHHHCCC-EEEEECC--CCHHHHHHHHHHCC
T ss_conf             6566777899999999755173-------113567788-99999999999987088-5898365--56356999987478


Q ss_pred             CCCCCCCCCCCCCCCCHHHHHHCCCC---C-CCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCC-CCC
Q ss_conf             22222222222322210333100012---2-122012113542100001233332111223333320111012211-000
Q gi|254780602|r  137 GIPVFVDTQQDDNFQVSPEKLEQAIT---P-KTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYE-HIV  211 (400)
Q Consensus       137 ~~~~~v~~~~~~~~~~d~~~l~~~i~---~-~~k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~-~l~  211 (400)
                      ++-+-+    -   +-|+++|++++.   + ++|+|.+=+=.-=-|.   -.-+++|||+ |++||.+=..||+|. .| 
T Consensus       154 ~~k~iF----r---HND~~hLe~LL~~~d~~~PKiIAFESvYSMDGd---~aPi~eiCDl-A~kYGALTy~DEVHAVGl-  221 (427)
T TIGR01821       154 AEKFIF----R---HNDVAHLEKLLQSVDPNAPKIIAFESVYSMDGD---IAPIKEICDL-ADKYGALTYLDEVHAVGL-  221 (427)
T ss_pred             CCEEEE----E---CCCHHHHHHHHHHCCCCCCCEEEEEEHCCCCCC---CCCHHHHHHH-HHHHCCCCEECCEEEECC-
T ss_conf             950563----0---599789999986477998956886100016787---2667889668-887188630011465336-


Q ss_pred             CCCCCCCCCCCCC-------CC--------------CCC-EEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCC
Q ss_conf             0012233222111-------23--------------332-2574146544322344544422110122687531001222
Q gi|254780602|r  212 YRNCQFSNIVNVE-------PS--------------LYE-RTLVVNGVSKAYAMTGLRIGYAAGALSLIKSMIVLQGQQT  269 (400)
Q Consensus       212 ~~~~~~~s~~~~~-------~~--------------~~~-~~i~~~S~SK~~~~~G~RiG~~v~~~~li~~l~~~~~~~~  269 (400)
                      | |.+.-.++..+       .+              +-+ -+|.-+|+.|.||+=|   ||+.++..|++.++.+..-..
T Consensus       222 Y-GprGgGIaErddfeshrasGiatPktndkGGakt~mhriDii~GTLaKAFG~~G---GYIa~~~~L~D~~RS~ApGFI  297 (427)
T TIGR01821       222 Y-GPRGGGIAERDDFESHRASGIATPKTNDKGGAKTLMHRIDIIEGTLAKAFGVVG---GYIAASRKLIDAVRSYAPGFI  297 (427)
T ss_pred             C-CCCCCCCCHHHHCCHHCCCCCCCCCCCCCCCCEECCCCCCCCCCCCHHHCCCCC---CEEECCCCCEEEEEECCCCCH
T ss_conf             5-888885120221100001576777657666520011100000165112234445---302055221320000378421


Q ss_pred             CC---CCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCHHHHHHCCCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCC
Q ss_conf             33---2222222222223467643-2222221100000002455304776033027408998626410233211332248
Q gi|254780602|r  270 SG---ACSIAQWAAVEALNGPQDF-VVNNRKIFEYRRDLCVAQLQGVPGIRYMIPDGAFYLYPSCQDLIGKKSPSGDVIR  345 (400)
Q Consensus       270 ~~---~~~~~q~a~~~~l~~~~~~-~~~~~~~~~~~r~~~~~~L~~~~g~~~~~p~g~~y~~~~~~~~~~~~~~~~~~~~  345 (400)
                      +.   ||.+ ..+|.++..+.+.. =+..|..=+++-..+.+.|++. |+.+.+-. +- +   +|-..      ++. .
T Consensus       298 FTTsLPP~~-~aGA~asIRhLK~~eg~~lR~~hQ~~~~~lK~~L~~~-GlPv~~~p-SH-I---vPv~i------GdA-~  363 (427)
T TIGR01821       298 FTTSLPPAI-AAGALASIRHLKESEGQDLRRAHQERVKRLKKLLEAL-GLPVIDNP-SH-I---VPVII------GDA-A  363 (427)
T ss_pred             HHHHHHHHH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHC-CCCCCCCC-CE-E---EEEEE------CCH-H
T ss_conf             242155899-9999999999751376778999989999999999957-77754887-73-8---87676------686-8


Q ss_pred             CHHHHHHHHHHHCCEEEECCCCCC--CCCE--EEEEEEC--CH---HHHHHHHHHH
Q ss_conf             989999999987397998350228--9972--8999629--99---9999999999
Q gi|254780602|r  346 TDLDFVNGLLEIEKVAVVQGSSFG--HGPS--IRISYAV--SD---AILEEACVRI  392 (400)
Q Consensus       346 ~~~~~~~~Ll~~~gV~v~pG~~Fg--~~~~--iRis~~~--~~---e~l~~al~rl  392 (400)
                      .....++-||.+|||.|.| ..|-  +.|.  +||+=++  +.   |.|.+||..+
T Consensus       364 ~~k~~SD~LL~~hGIYVQp-INyPTVpRG~ERLRitPtP~H~~~~id~Lv~AL~~~  418 (427)
T TIGR01821       364 KCKKVSDLLLNKHGIYVQP-INYPTVPRGTERLRITPTPVHTDKLIDDLVEALLLV  418 (427)
T ss_pred             HHHHHHHHHHHHCCCEEEC-CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf             8989989888717815712-688889887502442688898877899999999999


No 279
>COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]
Probab=99.28  E-value=8.7e-12  Score=91.86  Aligned_cols=271  Identities=12%  Similarity=0.081  Sum_probs=164.5

Q ss_pred             CCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--------
Q ss_conf             889999999999983887569987789899999999864210133332233233454333322222223322--------
Q gi|254780602|r   44 DMPENVKYAVVRAMERGETKYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFNALMATVNMG--------  115 (400)
Q Consensus        44 ~~p~~i~~a~~~al~~~~~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l~~~~~~~~~~G--------  115 (400)
                      .+++...+.+...+..+...-.-.++.-++-+.+..++.+.++.+ ..-.=.+|.|+++++.+++++.-+..        
T Consensus        73 ~~~~~a~~~~~~~~~~nl~d~~~~p~a~~~E~~~v~~l~~l~~~~-~~~~G~~t~GgTean~lal~aar~~~~~~~~~~~  151 (460)
T COG0076          73 RVPPVAAELLVSALNKNLGDPDESPAAAELEERVVNMLSDLLGAP-EEASGTFTSGGTEANLLALLAARERWRKRALAES  151 (460)
T ss_pred             CCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             867999999999873479981238315888999999999995799-7660679617079999999999999876644202


Q ss_pred             C------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCC--EEECCCCCCCCCCCCCCCCC
Q ss_conf             3------222233332322222222222222222222232221033310001221220--12113542100001233332
Q gi|254780602|r  116 D------EVLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQAITPKTKW--LFLNSPSNPSGVVYSQNRLR  187 (400)
Q Consensus       116 d------~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~k~--i~l~nP~NPTG~v~s~~~l~  187 (400)
                      .      +|+++.-.-..+...+.+.|.....+++++. ++.+|+++++++|++.+-.  |+-+-+.-|||.+   +.++
T Consensus       152 ~~~~~~P~ii~s~~aH~s~~Kaa~~lG~~~~~v~~~~~-~~~id~~~l~~~i~~~t~~g~vV~~aGtT~~G~i---Ddi~  227 (460)
T COG0076         152 GKPGGKPNIVCSETAHFSFEKAARYLGLGLRRVPTVPT-DYRIDVDALEEAIDENTIGGVVVGTAGTTDTGSI---DDIE  227 (460)
T ss_pred             CCCCCCCEEEECCCCCEEHHHHHHHHCCCCEEEEEECC-CEEECHHHHHHHHHHHCCCCEEEEECCCCCCCCC---CCHH
T ss_conf             34468874994574312099999981885237875247-5056899999999874647649997268888777---8899


Q ss_pred             CCCCCCCCCCCCEEECCCCCCCCC--CCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHH--HHHHHHH
Q ss_conf             111223333320111012211000--001223322211123332257414654432234454442211012--2687531
Q gi|254780602|r  188 ALADVLVRNPHVHIISDDIYEHIV--YRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTGLRIGYAAGALS--LIKSMIV  263 (400)
Q Consensus       188 ~i~~~~a~~~~i~ii~De~Y~~l~--~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~v~~~~--li~~l~~  263 (400)
                      +|.++| +++++|+-+|.||..+.  |.+....-...+ +.  -..|++ ++.|....| .-+||+....+  +.+.+..
T Consensus       228 ~ia~ia-~~~~i~lHVDAA~GG~~~pf~~~~~~~~f~l-~~--vdSIt~-d~HK~g~aP-~~~G~il~rd~e~l~~~~~~  301 (460)
T COG0076         228 ELADIA-EEYGIWLHVDAAFGGFLLPFLEPDGRWDFGL-EG--VDSITV-DGHKYGLAP-IGCGVVLFRDEEALRRILIF  301 (460)
T ss_pred             HHHHHH-HHCCCCEEEECCCCCHHHHCCCCCCHHHCCC-CC--CEEEEE-CCCCCCCCC-CCCEEEEEECHHHHHHHHHC
T ss_conf             999999-9769978987344002110247422535178-88--208998-864277888-87069999688984677612


Q ss_pred             HCCCCCC--------CCCCCC-----CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEE-CCCCEEEE
Q ss_conf             0012223--------322222-----2222222346764322222211000000024553047760330-27408998
Q gi|254780602|r  264 LQGQQTS--------GACSIA-----QWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQGVPGIRYMI-PDGAFYLY  327 (400)
Q Consensus       264 ~~~~~~~--------~~~~~~-----q~a~~~~l~~~~~~~~~~~~~~~~~r~~~~~~L~~~~g~~~~~-p~g~~y~~  327 (400)
                      ...+...        ..+.+.     |++....|  +.+-+.++.+...+..+.+.+.|++.+.+++.. |...-.+|
T Consensus       302 ~~~yl~~~~~~~~ti~~sr~~~~~~~~~~~l~~l--G~eGy~~l~~~~~~~a~~la~~l~~~~~~e~~~~p~l~~V~f  377 (460)
T COG0076         302 ADYYLPGGGIPNFTILGSRPGRQALALYANLRRL--GREGYRKLLDRTLELARYLAEELEKLGDFELVNEPELPIVAF  377 (460)
T ss_pred             CCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCEEEEE
T ss_conf             3667787786663688505418999999999996--788899999999999999999986478827633886507999


No 280
>PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional
Probab=99.26  E-value=8.3e-12  Score=91.97  Aligned_cols=329  Identities=17%  Similarity=0.153  Sum_probs=159.0

Q ss_pred             CCCCEEECCCCC--CCCC-CCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             699726656589--7498-8999999999998388756998778989999999986421013333223323345433332
Q gi|254780602|r   29 KGIDVLCLTAGE--PDFD-MPENVKYAVVRAMERGETKYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIF  105 (400)
Q Consensus        29 ~g~~ii~l~~G~--p~~~-~p~~i~~a~~~al~~~~~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l~  105 (400)
                      .|+..||+..|-  ..+. -+|.|.+|+++.++.+.+ |+.+ ...++  ..|+.+.+...   ..+.|.+++++++|..
T Consensus        46 dG~~YlD~~~g~~~~~lGH~~p~i~~Ai~~Ql~~~~~-~~~~-~~~~~--~~ae~l~~~~p---~~~~v~F~nSGsEA~e  118 (431)
T PRK06209         46 DGNEYIEYGMGLRAVGLGHAYPPVVEAVREALQDGCN-FTRP-SAIEL--DAAELFLDLID---GAEMVKFCKNGSDATS  118 (431)
T ss_pred             CCCEEEECCHHHHHHHHCCCCHHHHHHHHHHHHHCCC-CCCC-CHHHH--HHHHHHHHHCC---CCCEEEECCCCCHHHH
T ss_conf             8799998466499897737969999999999975265-5476-58999--99999997589---8656987278837899


Q ss_pred             CCCCCCC-CCCCC-CCC-CCCCCCCCCCCCCCCCCCCCC--CCCCC---CCCCC-CHHHHHHCCCCC---CCCCEEECCC
Q ss_conf             2222223-32232-222-333323222222222222222--22222---23222-103331000122---1220121135
Q gi|254780602|r  106 NALMATV-NMGDE-VLI-PRPYWVSYPDMVALCGGIPVF--VDTQQ---DDNFQ-VSPEKLEQAITP---KTKWLFLNSP  173 (400)
Q Consensus       106 ~~~~~~~-~~Gd~-Vlv-~~P~y~~y~~~~~~~g~~~~~--v~~~~---~~~~~-~d~~~l~~~i~~---~~k~i~l~nP  173 (400)
                      .+++..- -.|.. |+. ..-.|..+...  ..|..+..  +|-..   ...|. -|++++++.+.+   ++-+|++ -|
T Consensus       119 ~AlklAR~~tgr~~i~~~~~~~~~~~~~~--~~g~~~~~~g~~~~~~~~~~~~~y~d~~~le~~~~~~~~~iAAvIv-EP  195 (431)
T PRK06209        119 AAVRLARAYTGRDLVARCADHPFFSTDDW--FIGTTPMSAGIPASVSALTKTFRYNDIASLEALFEDYPGRIACVIL-EP  195 (431)
T ss_pred             HHHHHHHHHHCCCEEEECCCCCEEECCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEE-EC
T ss_conf             99999999759953777057755643566--5578765578887545666564765599999987645566678885-03


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf             42100001233332111223333320111012211000001223322211123332257414654432234454442211
Q gi|254780602|r  174 SNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTGLRIGYAAG  253 (400)
Q Consensus       174 ~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~v~  253 (400)
                      -  .|..-+++.++++-++| +++|+++|.||+...|.....-......+.|+     |+  +++|..+ .|+-+|.+++
T Consensus       196 i--~g~~p~~~fl~~lr~lc-~~~giLLI~DEV~TGfR~g~~~a~~~~gv~PD-----i~--t~gK~ig-gG~Pi~Av~g  264 (431)
T PRK06209        196 A--TADEPQDNFLHEVQRLC-HENGALFILDEMITGFRWHMRGAQKLYGIVPD-----LS--CFGKAMG-NGFSISALAG  264 (431)
T ss_pred             C--CCCCCCHHHHHHHHHHH-HHCCCEEEECCCCCCCCCCCCCHHHHCCCCCC-----EE--EEHHHHH-CCCCCEEEEE
T ss_conf             1--37789789999999999-87290799705602661675227662089987-----99--8701322-8888057778


Q ss_pred             HHHHHHHHHHHC--------CCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCHHHHHHCC---CCCE-EEE
Q ss_conf             012268753100--------1222332222222222223467--6432222221100000002455304---7760-330
Q gi|254780602|r  254 ALSLIKSMIVLQ--------GQQTSGACSIAQWAAVEALNGP--QDFVVNNRKIFEYRRDLCVAQLQGV---PGIR-YMI  319 (400)
Q Consensus       254 ~~~li~~l~~~~--------~~~~~~~~~~~q~a~~~~l~~~--~~~~~~~~~~~~~~r~~~~~~L~~~---~g~~-~~~  319 (400)
                      .+++++......        -..+.+.+.++..|+++.|+.-  ++.++    ..++.-+++.+.|+++   .++. -+.
T Consensus       265 ~~eim~~~~~~~~~~~~~f~~~~T~~g~p~~~AAalatL~~~~~~~l~~----~~~~~G~~L~~~l~~l~~~~~~~~~vr  340 (431)
T PRK06209        265 KREYMELGGLEHTDFERVFLLSTTHGAETHALAAAIATMAIYREEDVIE----RLWEQGAKLAAGVNEAAAEHGLQDHVR  340 (431)
T ss_pred             HHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHH----HHHHHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf             6997640355567866541104577888799999999999998544999----999999999999999997679977997


Q ss_pred             CCCCEEEEEECCCCCCCCCCCCCCCCCHHH----HHHHHHHHCCEEEECCCCCCCCCEEEEEEECCHHHHHHHHHHHHHH
Q ss_conf             274089986264102332113322489899----9999998739799835022899728999629999999999999999
Q gi|254780602|r  320 PDGAFYLYPSCQDLIGKKSPSGDVIRTDLD----FVNGLLEIEKVAVVQGSSFGHGPSIRISYAVSDAILEEACVRIKRF  395 (400)
Q Consensus       320 p~g~~y~~~~~~~~~~~~~~~~~~~~~~~~----~~~~Ll~~~gV~v~pG~~Fg~~~~iRis~~~~~e~l~~al~rl~~~  395 (400)
                      -.| +.+.+.+....       .....+.+    |.+.++ ++||+. |        .+-+|++.++++|++.++.+++.
T Consensus       341 ~~G-~~~~~~f~~~~-------~~~~~~~~~~~~~~~~ml-~~Gvl~-~--------~~~iS~aHt~~di~~~l~a~~~a  402 (431)
T PRK06209        341 VSG-RPCCLTYSTLD-------GNGQPSQAFRTLFLQEMI-RRGVLM-P--------SLVVSYAHGDADIERTIDAVHGA  402 (431)
T ss_pred             EEE-EEEEEEEECCC-------CCCCCHHHHHHHHHHHHH-HCCEEH-H--------HHHHHHCCCHHHHHHHHHHHHHH
T ss_conf             640-13378993244-------556876999999999999-589751-2--------47760533999999999999999


Q ss_pred             HHHCC
Q ss_conf             98609
Q gi|254780602|r  396 CHSLQ  400 (400)
Q Consensus       396 l~~l~  400 (400)
                      ++.||
T Consensus       403 l~~l~  407 (431)
T PRK06209        403 LGVYR  407 (431)
T ss_pred             HHHHH
T ss_conf             99999


No 281
>TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase; InterPro: IPR013375   The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases .    Many archaeal species lack cysteinyl-tRNA synthetase, an essential enzyme that provides Cys-tRNA(Cys) in other organisms. Instead, in a two step pathway, tRNA-Cys is acylated with O-phosphoserine (Sep) to form Sep-tRNA(Cys), which is subsequently converted to Cys-tRNA(Cys) . This pathway is also thought to function as the sole route of cysteine biosynthesis in these organisms. Several other archaeal species use both this pathway and direct tRNA(Cys) aminoacylation to synthesize Cys-tRNA(Cys), but this pathway appears to be the only route for cysteine biosynthesis. Proteins in this entry catalyse the second step in this pathway using pyridoxal phosphate and a sulphur donor to synthesize Cys from Sep while attached to the tRNA..
Probab=99.25  E-value=2.9e-11  Score=88.65  Aligned_cols=295  Identities=17%  Similarity=0.195  Sum_probs=181.0

Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCC-CCCCCCC
Q ss_conf             9999999864210133332233233454333322222223322322223333-2322222222222222222-2222322
Q gi|254780602|r   73 LREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFNALMATVNMGDEVLIPRPY-WVSYPDMVALCGGIPVFVD-TQQDDNF  150 (400)
Q Consensus        73 lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l~~~~~~~~~~Gd~Vlv~~P~-y~~y~~~~~~~g~~~~~v~-~~~~~~~  150 (400)
                      +-+|||+|+    |.    |.+=+|+||.++=+.++.++|.+||.|++-.-. |..|- +++.+|.++..|| -...-.|
T Consensus        57 ~~daLA~Fl----G~----D~~R~t~GARe~KfaVMhalC~~GD~vV~D~~AHYtsyv-AAEragl~v~eVPy~~g~P~Y  127 (381)
T TIGR02539        57 LEDALAEFL----GM----DVVRVTHGAREGKFAVMHALCKEGDVVVLDGLAHYTSYV-AAERAGLNVKEVPYETGHPEY  127 (381)
T ss_pred             HHHHHHHHH----CC----CEEECCCCCCHHHHHHHHHHCCCCCEEEECCCCCHHHHH-HHHHCCCEEEECCCCCCCCEE
T ss_conf             455426672----79----745406775024578876408998989985874544589-997549727881655888607


Q ss_pred             CCHHHHHHCCCCC-------CCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf             2103331000122-------122012113542100001233332111223333320111012211000001223322211
Q gi|254780602|r  151 QVSPEKLEQAITP-------KTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNV  223 (400)
Q Consensus       151 ~~d~~~l~~~i~~-------~~k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~  223 (400)
                      .+++|...+.|.+       .+++++|++|.-==|++   .+-++++++| |++++.++..-||.-    |.=+.|...+
T Consensus       128 ~v~~e~Y~~viee~~d~~G~~~~LallThvDG~YGNL---~DA~kva~vc-~~~gvPlLLNCAY~v----GRmPv~~ke~  199 (381)
T TIGR02539       128 KVDPEGYKEVIEEVEDESGKPVALALLTHVDGEYGNL---ADAKKVAKVC-REKGVPLLLNCAYTV----GRMPVSAKEI  199 (381)
T ss_pred             EECHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCC---HHHHHHHHHH-HHCCCCEEECCCCEE----EEECCCCCCC
T ss_conf             6416678888865520279883489984026886751---1245687665-420786221245052----1003157777


Q ss_pred             CCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCC---C------------CCCCCCCCCCCCCCCCCCCCC
Q ss_conf             1233322574146544322344544422110122687531001---2------------223322222222222234676
Q gi|254780602|r  224 EPSLYERTLVVNGVSKAYAMTGLRIGYAAGALSLIKSMIVLQG---Q------------QTSGACSIAQWAAVEALNGPQ  288 (400)
Q Consensus       224 ~~~~~~~~i~~~S~SK~~~~~G~RiG~~v~~~~li~~l~~~~~---~------------~~~~~~~~~q~a~~~~l~~~~  288 (400)
                      -+     -++++|-.|+.+..| -||.+.-.++.-+.+.+-.+   .            +..|.+.  ..-++.++ ..-
T Consensus       200 ~~-----DFiVGSGHKSMAASa-P~GvLa~~eE~~~~v~r~SslrGdvsG~~~~~KEvElLGCT~r--Gap~~Tlm-ASf  270 (381)
T TIGR02539       200 KA-----DFIVGSGHKSMAASA-PCGVLAMSEEWEDKVLRKSSLRGDVSGRKFPVKEVELLGCTSR--GAPIVTLM-ASF  270 (381)
T ss_pred             CC-----CEEEECCCCHHHHCC-CEEECCCCCCCCCCHHCCCCCCCCCCCCCCCCCEEEECCCCCC--HHHHHHHH-HCC
T ss_conf             87-----677806851322126-6002145422234011023210033663447412774486324--04799997-328


Q ss_pred             CCCCCCCCCCC---CCCCCHHHHHHCCCCCEE--EECCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEE
Q ss_conf             43222222110---000000245530477603--3027408998626410233211332248989999999987397998
Q gi|254780602|r  289 DFVVNNRKIFE---YRRDLCVAQLQGVPGIRY--MIPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVV  363 (400)
Q Consensus       289 ~~~~~~~~~~~---~~r~~~~~~L~~~~g~~~--~~p~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~  363 (400)
                      .++.+..+.+.   ++-+++.+.|+++.|++=  .+|.-==.+....|.+.   ....+..+...-|.+.| ++.||.  
T Consensus       271 P~VveRV~~Wd~Ev~ktRy~v~eLE~igG~~QlG~kPk~HDLv~FEtPgf~---Eia~~~kr~GyFLY~EL-KkRgi~--  344 (381)
T TIGR02539       271 PHVVERVKRWDEEVKKTRYFVAELEDIGGFKQLGVKPKEHDLVKFETPGFH---EIAKKHKRRGYFLYEEL-KKRGIV--  344 (381)
T ss_pred             CHHHHHCCCHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCEEECCCCCH---HHHCCCCCCCCCHHHHH-HHCCCE--
T ss_conf             101122023156677765788876421788864868882564144488401---34144879776405665-315830--


Q ss_pred             CCCCCCCCCEEEEEE-ECCHHHHHHHHHHHHHHHHHCC
Q ss_conf             350228997289996-2999999999999999998609
Q gi|254780602|r  364 QGSSFGHGPSIRISY-AVSDAILEEACVRIKRFCHSLQ  400 (400)
Q Consensus       364 pG~~Fg~~~~iRis~-~~~~e~l~~al~rl~~~l~~l~  400 (400)
                       |..=|.-.+|-+|. +...|+++--++-+++.+++.+
T Consensus       345 -GI~~G~Tk~~K~SvYGL~~Eqv~~Vv~sf~eI~e~~~  381 (381)
T TIGR02539       345 -GIRSGQTKEIKLSVYGLTKEQVEYVVDSFKEIVEEYK  381 (381)
T ss_pred             -ECCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHCC
T ss_conf             -0178874277643312752114444678999998549


No 282
>COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism]
Probab=99.24  E-value=5.6e-11  Score=86.94  Aligned_cols=350  Identities=15%  Similarity=0.124  Sum_probs=179.9

Q ss_pred             CCCCEEECCCC--CCCCC-CCHHHHHHHHHHHHCCC-CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf             69972665658--97498-89999999999983887-5699877898999999998642101333322332334543333
Q gi|254780602|r   29 KGIDVLCLTAG--EPDFD-MPENVKYAVVRAMERGE-TKYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVI  104 (400)
Q Consensus        29 ~g~~ii~l~~G--~p~~~-~p~~i~~a~~~al~~~~-~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l  104 (400)
                      +|+..|||..|  -.++. -+|.|++|+.+.++.-. +.+....+  +-..++|+.+.....-+ ..+.+++++.++++.
T Consensus        54 dG~~ylDf~sgi~v~~~GH~hP~Vv~Av~~q~~~~~h~~~~~~~~--e~~v~~ae~L~~~~p~~-~~~~~~f~~sGaeA~  130 (447)
T COG0160          54 DGNEYLDFLSGIAVLNLGHNHPRVVEAVKRQLAKLNHTHTRDLYY--EPYVELAEKLTALAPGS-GLKKVFFGNSGAEAV  130 (447)
T ss_pred             CCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCC--HHHHHHHHHHHHHCCCC-CCCEEEECCCCHHHH
T ss_conf             999898825676201037899899999999999730135776663--36999999999758865-677699568837789


Q ss_pred             CCCCCCC-CCCC-CCCCCCCCCCCCCCC-CCCCC---------------CCCCCCCCCCCCCCCC--------CHHHHHH
Q ss_conf             2222222-3322-322223333232222-22222---------------2222222222223222--------1033310
Q gi|254780602|r  105 FNALMAT-VNMG-DEVLIPRPYWVSYPD-MVALC---------------GGIPVFVDTQQDDNFQ--------VSPEKLE  158 (400)
Q Consensus       105 ~~~~~~~-~~~G-d~Vlv~~P~y~~y~~-~~~~~---------------g~~~~~v~~~~~~~~~--------~d~~~l~  158 (400)
                      .+++..- ...| ..||...=.|-.-.. ...+.               +...+++|-..-+.|.        -..+.++
T Consensus       131 E~AiKiAr~~Tgr~~viaf~~afHG~T~galslT~~~~~~~~~~~~~~~~v~~~Pyp~~yr~p~~~~~~~~~~~~~~~~e  210 (447)
T COG0160         131 EAAIKIARAYTGRPGVIAFDGAFHGRTLGALSLTGSKPPYKAGFGPLPPGVYHVPYPNPYRCPFGIGGEECGDDALEYIE  210 (447)
T ss_pred             HHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf             99999999985898489978865563266687545766533578899998588168865567555663555689999999


Q ss_pred             CCCC------CCCCCEEECCC-CCCCCCC-CCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf             0012------21220121135-4210000-12333321112233333201110122110000012233222111233322
Q gi|254780602|r  159 QAIT------PKTKWLFLNSP-SNPSGVV-YSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYER  230 (400)
Q Consensus       159 ~~i~------~~~k~i~l~nP-~NPTG~v-~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~  230 (400)
                      +.+.      .++-++++ -| +.=.|.+ -+++.++++.++| ++|++++|.||+-..+.=.|    .+++..  ..+-
T Consensus       211 ~~i~~~~~~~~~vAaiI~-EpIQgegG~~v~p~~fl~~l~~~~-~~~gillI~DEVQtG~GRTG----~~fa~E--~~gv  282 (447)
T COG0160         211 RALFDLEVGPEEVAAIII-EPIQGEGGIIVPPKGFLKALRKLC-REHGILLIADEVQTGFGRTG----KMFAFE--HFGV  282 (447)
T ss_pred             HHHHHHCCCCCCEEEEEE-ECCCCCCCCCCCCHHHHHHHHHHH-HHCCCEEEEECCCCCCCCCC----CCHHHH--HCCC
T ss_conf             998740478775469998-421078997479899999999999-98198899956655888662----601224--2099


Q ss_pred             EEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf             57414654432234454442211012268753100122233222222222222346764322222211000000024553
Q gi|254780602|r  231 TLVVNGVSKAYAMTGLRIGYAAGALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQ  310 (400)
Q Consensus       231 ~i~~~S~SK~~~~~G~RiG~~v~~~~li~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~~~~~L~  310 (400)
                      .-=+-++||..+- |+-+|.+++.+++..........+ .+-+.+...++.+.|+.-++  +.+.+.-.+.-+++.+.|.
T Consensus       283 ~PDivt~aK~ig~-G~Pl~avv~r~ei~~~~~g~~~~T-f~GNpva~Aaa~AvL~vie~--e~L~~~a~~~G~~l~~~L~  358 (447)
T COG0160         283 EPDIVTLAKSLGG-GLPLSAVVGRAEIMDWPPGGHGGT-FGGNPVACAAALAVLDVIEE--ENLLERAAELGEYLRDRLE  358 (447)
T ss_pred             CCCEEEECCCCCC-CCCEEEEECCHHHCCCCCCCCCCC-CCCCHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHH
T ss_conf             9878985333457-872067744577601477654777-78698999999999999987--4299999999999999999


Q ss_pred             CCCC-C-EEEECCC-CEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCCCCEEEEE--EECCHHHH
Q ss_conf             0477-6-0330274-0899862641023321133224898999999998739799835022899728999--62999999
Q gi|254780602|r  311 GVPG-I-RYMIPDG-AFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGHGPSIRIS--YAVSDAIL  385 (400)
Q Consensus       311 ~~~g-~-~~~~p~g-~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~iRis--~~~~~e~l  385 (400)
                      ++.. . .+-...| |+++-+++-+-.....+..   .--..++.++ .+.|+++..+-.+  .+-+||.  +..+++++
T Consensus       359 ~l~~~~~~IgdVRG~Glm~giE~v~d~~t~~p~~---~~~~~i~~~~-~~~Glil~~~G~~--~nviRi~PPL~is~e~~  432 (447)
T COG0160         359 ELQEKHPLIGDVRGLGLMIGVELVKDRDTKEPDA---ELAAKIVARA-FERGLLLLTCGPH--GNVLRILPPLTISDEEL  432 (447)
T ss_pred             HHHHHCCCEECCCCCCEEEEEEEECCCCCCCCCH---HHHHHHHHHH-HHCCCEEECCCCC--CCEEEEECCCCCCHHHH
T ss_conf             9986467442124465078999833787789999---9999999999-9869888545787--86799828954389999


Q ss_pred             HHHHHHHHHHHHHC
Q ss_conf             99999999999860
Q gi|254780602|r  386 EEACVRIKRFCHSL  399 (400)
Q Consensus       386 ~~al~rl~~~l~~l  399 (400)
                      +++++.|.+.++.+
T Consensus       433 d~~l~il~~al~~~  446 (447)
T COG0160         433 DEGLDILEEALKEA  446 (447)
T ss_pred             HHHHHHHHHHHHHH
T ss_conf             99999999999854


No 283
>cd00617 Tnase_like Tryptophanase family (Tnase). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia.
Probab=99.24  E-value=7.6e-11  Score=86.11  Aligned_cols=350  Identities=16%  Similarity=0.202  Sum_probs=203.9

Q ss_pred             HHHHHHHCCCCEEECCCCCC--CCC-------CCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             99999986997266565897--498-------899999999999838875699877898999999998642101333322
Q gi|254780602|r   22 RVRDLRSKGIDVLCLTAGEP--DFD-------MPENVKYAVVRAMERGETKYTAVAGISPLREAIVEKFRRDNDLHYTSD   92 (400)
Q Consensus        22 ~~~~~~~~g~~ii~l~~G~p--~~~-------~p~~i~~a~~~al~~~~~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~e   92 (400)
                      +.+.++.+|-+...|-..+.  |+-       ....--.    ++-.+.-.|..+++...|++++.+.+    |    -+
T Consensus         2 R~~al~~agyN~F~L~s~dV~iDLLTDSGT~AMSd~QWA----a~m~gDesYAGs~sf~~l~~av~d~~----g----~~   69 (431)
T cd00617           2 RERALKEAGYNVFLLRSEDVYIDLLTDSGTGAMSDYQWA----AMMLGDEAYAGSKSFYDLEDAVQDLF----G----FK   69 (431)
T ss_pred             HHHHHHHCCCCCCCCCCCCEEEEEEECCCCCCCCHHHHH----HHHCCCHHHCCCCCHHHHHHHHHHHC----C----CC
T ss_conf             579998749982358747667970135896658889999----98705653257802899999999864----9----97


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC------CCC--CCHHHHHHCCCCC-
Q ss_conf             3323345433332222222332232222333323222222222222222222222------322--2103331000122-
Q gi|254780602|r   93 QIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDMVALCGGIPVFVDTQQD------DNF--QVSPEKLEQAITP-  163 (400)
Q Consensus        93 ~I~it~G~~~~l~~~~~~~~~~Gd~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~~------~~~--~~d~~~l~~~i~~-  163 (400)
                      +|++|.-+..+=..++.+++.||+. +..+-.|+..+.-++..|++++.++.++.      .-|  .+|++.|++.|.+ 
T Consensus        70 ~v~PtHQGRaAE~iLf~~~~k~g~~-v~~N~hFdTTrahie~~G~~~vdl~~~ea~d~~~~~pFKGN~Dl~kLe~~i~~~  148 (431)
T cd00617          70 HIIPTHQGRGAENILFSILLKPGRT-VPSNMHFDTTRGHIEANGAVPVDLVIDEAHDAQELIPFKGNIDVAKLEKLIDEV  148 (431)
T ss_pred             CEEECCCCHHHHHHHHHHHCCCCCE-ECCCCCCCCHHHHHHHCCCEEEECCCHHCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf             1247687679999999983679988-446878732589999769978733150004857778848888999999999873


Q ss_pred             ---CCCCEEECCCCCC-CCCCCCCCCCCCCCCCCCCCCCCEEECCCCC-C---CCCC---CCCCCCCCCCCCCCCCCE-E
Q ss_conf             ---1220121135421-0000123333211122333332011101221-1---0000---012233222111233322-5
Q gi|254780602|r  164 ---KTKWLFLNSPSNP-SGVVYSQNRLRALADVLVRNPHVHIISDDIY-E---HIVY---RNCQFSNIVNVEPSLYER-T  231 (400)
Q Consensus       164 ---~~k~i~l~nP~NP-TG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y-~---~l~~---~~~~~~s~~~~~~~~~~~-~  231 (400)
                         +...|++.--||- .|+=.|-+.++++.++| ++|++.++.|.+= .   .|+-   .+..-.|+..+..++.+. -
T Consensus       149 g~~~I~~v~~tiTnN~~GGQPVSm~Nir~v~~la-~~~giplvlDaaRfaENAyFIk~rE~gy~d~si~eI~rEmfs~aD  227 (431)
T cd00617         149 GAENIPYIVLTITNNTAGGQPVSMANLREVRELA-HKYGIPVVLDAARFAENAYFIKEREEGYRDKSIAEIAREMFSYAD  227 (431)
T ss_pred             CCCCEEEEEEEEEECCCCCCCCCHHHHHHHHHHH-HHCCCCEEEEHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH
T ss_conf             8666108999986368788566789999999999-980997998766788768999843530247999999999985402


Q ss_pred             EEECCCCCCCCCCCCCC-CCCCCH-HHHHHHHHHHCCC-----CCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCC
Q ss_conf             74146544322344544-422110-1226875310012-----22332222222222223467--643222222110000
Q gi|254780602|r  232 LVVNGVSKAYAMTGLRI-GYAAGA-LSLIKSMIVLQGQ-----QTSGACSIAQWAAVEALNGP--QDFVVNNRKIFEYRR  302 (400)
Q Consensus       232 i~~~S~SK~~~~~G~Ri-G~~v~~-~~li~~l~~~~~~-----~~~~~~~~~q~a~~~~l~~~--~~~~~~~~~~~~~~r  302 (400)
                      .+.-|..|...+   ++ |++..+ +++.++++...-.     +..+++.--..+++..|.+.  ++|+....    ..-
T Consensus       228 g~tmSaKKD~~v---niGG~ia~~D~~l~~~~~~~~i~~EGf~TYGGlaGRD~eAlA~GL~E~~d~~yl~~Ri----~qv  300 (431)
T cd00617         228 GCTMSAKKDGLV---NIGGFLALRDDELYEEARQRVVLYEGFVTYGGMAGRDMEALAQGLREAVEEDYLRHRV----EQV  300 (431)
T ss_pred             EEEEEECCCCCC---CCCCEEEECCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCHHHHCCHHHHHHHH----HHH
T ss_conf             789970314532---4556788577999999975432005874435632534999865407543679999779----999


Q ss_pred             CCHHHHHHCCCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEEC-CC-CCCCC---------
Q ss_conf             00024553047760330274089986264102332113322489899999999873979983-50-22899---------
Q gi|254780602|r  303 DLCVAQLQGVPGIRYMIPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQ-GS-SFGHG---------  371 (400)
Q Consensus       303 ~~~~~~L~~~~g~~~~~p~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~p-G~-~Fg~~---------  371 (400)
                      +++.+.|.+. |+.+..|-||--+++|...+.... +.  .......|+..|..+.||-.+- |+ .||.+         
T Consensus       301 ~yL~~~L~~~-GvPvv~P~GGHav~iDA~~flPhi-p~--~~fPa~aLa~~LY~~~GIR~~E~Gs~~~grd~~t~e~~~~  376 (431)
T cd00617         301 RYLGDRLDEA-GVPIVEPAGGHAVFIDAREFLPHI-PQ--EQFPAQALAAELYLEAGVRAVELGIFSAGRDPNTGENKYP  376 (431)
T ss_pred             HHHHHHHHHC-CCCEECCCCCEEEEEEHHHHCCCC-CH--HHCCHHHHHHHHHHHCCCCEEEECCEECCCCCCCCCCCCC
T ss_conf             9999999988-996666897438997467746899-81--4391899999999970945685402002548887666788


Q ss_pred             --CEEEEEEEC---CH---HHHHHHHHHHHHHH
Q ss_conf             --728999629---99---99999999999999
Q gi|254780602|r  372 --PSIRISYAV---SD---AILEEACVRIKRFC  396 (400)
Q Consensus       372 --~~iRis~~~---~~---e~l~~al~rl~~~l  396 (400)
                        .-+|+++-.   +.   +-+.+++..+.+=-
T Consensus       377 ~~ElvRLAiPRRvYT~~H~dyva~~l~~l~~~r  409 (431)
T cd00617         377 ELELVRLAIPRRVYTQDHMDYVAAAVIALYERR  409 (431)
T ss_pred             CCCEEEEECCCHHCCHHHHHHHHHHHHHHHHHH
T ss_conf             622256713502035879999999999999558


No 284
>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]
Probab=99.23  E-value=1.1e-11  Score=91.20  Aligned_cols=141  Identities=22%  Similarity=0.273  Sum_probs=101.1

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEE
Q ss_conf             23345433332222222332232222333323----22222222222222222222232221033310001221220121
Q gi|254780602|r   95 IVGTGAKHVIFNALMATVNMGDEVLIPRPYWV----SYPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQAITPKTKWLFL  170 (400)
Q Consensus        95 ~it~G~~~~l~~~~~~~~~~Gd~Vlv~~P~y~----~y~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~k~i~l  170 (400)
                      +.+..++.++..++..++.+||+|+-..--|.    .+...++..|.++.+++.       .|++.++++|+++||+||+
T Consensus        81 ~a~aSG~AA~~~ai~~la~aGD~iVss~~LYGGT~~lf~~tl~~~Gi~v~fvd~-------~d~~~~~~aI~~nTkavf~  153 (426)
T COG2873          81 LAVASGQAAITYAILNLAGAGDNIVSSSKLYGGTYNLFSHTLKRLGIEVRFVDP-------DDPENFEAAIDENTKAVFA  153 (426)
T ss_pred             HHHCCCHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHCCCEEEEECC-------CCHHHHHHHHCCCCCEEEE
T ss_conf             333133589999999864588706751323375488999888864817999279-------9989999873822406878


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCC
Q ss_conf             13542100001233332111223333320111012211000001223322211123332257414654432234454442
Q gi|254780602|r  171 NSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTGLRIGY  250 (400)
Q Consensus       171 ~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~  250 (400)
                      -+=.||-+.+.+   +++|+++| +++++.+|+|.....-          +-+.|-...--|++.|+||..+--|--+|-
T Consensus       154 EtigNP~~~v~D---ie~ia~iA-h~~gvpliVDNT~atp----------yl~rP~~hGADIVvHS~TK~igGhGt~iGG  219 (426)
T COG2873         154 ETIGNPGLDVLD---IEAIAEIA-HRHGVPLIVDNTFATP----------YLCRPIEHGADIVVHSATKYIGGHGTAIGG  219 (426)
T ss_pred             EECCCCCCCCCC---HHHHHHHH-HHCCCCEEEECCCCCC----------EECCHHHCCCCEEEEEECCCCCCCCCCCCE
T ss_conf             751688766357---79999999-8759938983677730----------043665618877998603012677654240


Q ss_pred             CCCHHH
Q ss_conf             211012
Q gi|254780602|r  251 AAGALS  256 (400)
Q Consensus       251 ~v~~~~  256 (400)
                      ++.+..
T Consensus       220 ~iVD~G  225 (426)
T COG2873         220 VIVDGG  225 (426)
T ss_pred             EEEECC
T ss_conf             798677


No 285
>KOG1358 consensus
Probab=99.23  E-value=2.5e-10  Score=82.92  Aligned_cols=340  Identities=18%  Similarity=0.186  Sum_probs=180.4

Q ss_pred             HCCCCEEECCCCC-CCCCCCHHHHHHHHHHHHCC-C------CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf             8699726656589-74988999999999998388-7------56998778989999999986421013333223323345
Q gi|254780602|r   28 SKGIDVLCLTAGE-PDFDMPENVKYAVVRAMERG-E------TKYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTG   99 (400)
Q Consensus        28 ~~g~~ii~l~~G~-p~~~~p~~i~~a~~~al~~~-~------~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~e~I~it~G   99 (400)
                      ..|+|++||...| -+|.-.+.+++.+...++.- .      .-|+...=+..|-+.||+++    |   .++.|+...|
T Consensus        91 i~G~~~~N~aS~NfL~l~~~~~ike~a~~~lrkyGvGsCGPrGFYGt~DvHldlE~~iakF~----G---~E~aivYs~g  163 (467)
T KOG1358          91 IDGKDVLNFASANFLGLIENEEIKEEASFTLRKYGVGSCGPRGFYGTIDVHLDLEKRIAKFM----G---TEDAIVYSYG  163 (467)
T ss_pred             ECCCEEECCCCHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCHHHHHHHH----C---CCCEEEECCC
T ss_conf             63840011121003554056778999999999738877678764312211046677898750----8---8642663266


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCC------------CC
Q ss_conf             433332222222332232222333-32322222222222222222222232221033310001221------------22
Q gi|254780602|r  100 AKHVIFNALMATVNMGDEVLIPRP-YWVSYPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQAITPK------------TK  166 (400)
Q Consensus       100 ~~~~l~~~~~~~~~~Gd~Vlv~~P-~y~~y~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~------------~k  166 (400)
                      = ..+..++.+++..||.|.+..- .|.. ...+++..-++++..-       -|+++++....+.            +|
T Consensus       164 F-~ti~S~ipafsKrGDIi~~de~~nfaI-q~GlqlSRS~i~~Fkh-------ndm~~lerll~E~~~~~~K~~k~~~~R  234 (467)
T KOG1358         164 F-STIESAIPAFSKRGDIIFVDEAVNFAI-QKGLQLSRSTISYFKH-------NDMEDLERLLPEQEDEDQKNPKKALTR  234 (467)
T ss_pred             C-CHHHHCCHHHHCCCCEEEEEHHHHHHH-HHHHHHHHHEEEEECC-------CCHHHHHHHCCCCCHHHHHCCCCCCCE
T ss_conf             3-003200012311476799862102998-8777640200378547-------887889975457622233144445413


Q ss_pred             CEEECCC-CCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC--CCCCCCCCCCCCCCCCEEEEECCCCCCCCC
Q ss_conf             0121135-4210000123333211122333332011101221100000--122332221112333225741465443223
Q gi|254780602|r  167 WLFLNSP-SNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYR--NCQFSNIVNVEPSLYERTLVVNGVSKAYAM  243 (400)
Q Consensus       167 ~i~l~nP-~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~--~~~~~s~~~~~~~~~~~~i~~~S~SK~~~~  243 (400)
                      -+++.-- --+||...+.   .+|++. ..++...||.||-|+.=+.+  |.-.+.-....  +.+--+++.|++-..+.
T Consensus       235 rfiv~EGl~~N~g~i~pl---~~iv~l-k~Kyk~RvildEs~SfG~lg~~GrGvteH~~v~--~~~iDiv~~sm~~alas  308 (467)
T KOG1358         235 RFIVVEGLYANTGDICPL---PEIVKL-KNKYKFRVILDESLSFGVLGKTGRGVTEHFGVP--ITDIDIVTASMETALAS  308 (467)
T ss_pred             EEEEEEEECCCCCCCCCC---HHHHHH-HHHHEEEEEEECCCCCCCCCCCCCCCCCCCCCC--CCCEEEEEECCCCCCCC
T ss_conf             799997640477750350---999998-766258999833333243035686632468988--03112565114444314


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHCCCCC-CC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEE-
Q ss_conf             44544422110122687531001222-33--222222222222346764322222211000000024553047760330-
Q gi|254780602|r  244 TGLRIGYAAGALSLIKSMIVLQGQQT-SG--ACSIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQGVPGIRYMI-  319 (400)
Q Consensus       244 ~G~RiG~~v~~~~li~~l~~~~~~~~-~~--~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~~~~~L~~~~g~~~~~-  319 (400)
                      .|   ||.++ ..++-...++.+... ++  .+.....++..++. -.+|-.++.+.++..-..+-..|+...++.+.. 
T Consensus       309 ~G---gFc~G-~~~i~~hQrLSg~~Y~fSAslPp~la~aa~~ai~-i~~~~p~~~~~L~~k~~~~H~~l~~~s~~~v~~~  383 (467)
T KOG1358         309 GG---GFCAG-KSFIADHQRLSGSGYCFSASLPPYLAGAAIKAIL-IEEWNPEIVQPLRAKVAKFHAALSSNSGFIVSGS  383 (467)
T ss_pred             CC---CEEEC-CEEEEEEEECCCCCEEEECCCCHHHHHHHHHHHH-HHHHCCCHHHHHHCCCCCCCHHHHCCCCEEEECC
T ss_conf             67---54325-5236753001566256513475555456777777-7761840222222025210466604772598468


Q ss_pred             CCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCC------CCCCEEEEEEE--CCHHHHHHHHHH
Q ss_conf             2740899862641023321133224898999999998739799835022------89972899962--999999999999
Q gi|254780602|r  320 PDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSF------GHGPSIRISYA--VSDAILEEACVR  391 (400)
Q Consensus       320 p~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~F------g~~~~iRis~~--~~~e~l~~al~r  391 (400)
                      |.. --+.+.+........   +...--.++++..+.+ +++++-...-      -.++.+||++.  .++|+++.|.+-
T Consensus       384 ~~S-Pi~hl~l~~~~~s~e---~e~~lL~eivd~~i~~-~~ll~~a~~~~~~e~~~~~pSiri~~~a~~seeel~ra~~~  458 (467)
T KOG1358         384 PES-PIIHLQLERSYGSRE---KEEKLLEEIVDKCIAE-GVLLTRAKYLEKLERCPIPPSIRICVSAGMSEEELERAAEL  458 (467)
T ss_pred             CCC-CEEEEEECCCCCCHH---HHHHHHHHHHHHHHHH-CCEEHHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHH
T ss_conf             677-200123245556667---7999999999999862-53100314553033479998579987079999999999999


Q ss_pred             HHHHHHHC
Q ss_conf             99999860
Q gi|254780602|r  392 IKRFCHSL  399 (400)
Q Consensus       392 l~~~l~~l  399 (400)
                      |+++.++.
T Consensus       459 ik~~~~~~  466 (467)
T KOG1358         459 IKEVASAV  466 (467)
T ss_pred             HHHHHHHH
T ss_conf             99999864


No 286
>PRK13237 tyrosine phenol-lyase; Provisional
Probab=99.19  E-value=1.1e-10  Score=85.18  Aligned_cols=365  Identities=15%  Similarity=0.190  Sum_probs=208.9

Q ss_pred             HHCCCCHHHHHHHHHHHHHHCCCCEEECCCCCC--CC-------CCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             738975899999999999986997266565897--49-------889999999999983887569987789899999999
Q gi|254780602|r    9 RRVQPSATLVAAQRVRDLRSKGIDVLCLTAGEP--DF-------DMPENVKYAVVRAMERGETKYTAVAGISPLREAIVE   79 (400)
Q Consensus         9 ~~l~~s~~~~~~~~~~~~~~~g~~ii~l~~G~p--~~-------~~p~~i~~a~~~al~~~~~~Y~~~~G~~~lR~aia~   79 (400)
                      +-++|=......++.+.++.+|-+...|-..+.  |+       .....--.    ++..+.-.|+.+.....|++++.+
T Consensus        14 k~Vepi~~~treeR~~al~~AgyN~F~L~s~dV~IDlLTDSGT~AMSd~QwA----amm~gDEsYAGs~sf~~l~~~v~d   89 (459)
T PRK13237         14 KSVEPVKMTTREEREQAIKEAGYNTFLLRSEDVYIDLLTDSGTNAMSDKQWA----GMMIGDEAYAGSRNFYHLEATVQE   89 (459)
T ss_pred             EEEEECCCCCHHHHHHHHHHCCCCEECCCCCCEEEECEECCCCCCCCHHHHH----HHHHCCHHHHCCCCHHHHHHHHHH
T ss_conf             6785358999999999999818983037656614665115884426799999----987304555324018999999999


Q ss_pred             HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC------CC--C
Q ss_conf             864210133332233233454333322222223322322223333232222222222222222222223------22--2
Q gi|254780602|r   80 KFRRDNDLHYTSDQIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDMVALCGGIPVFVDTQQDD------NF--Q  151 (400)
Q Consensus        80 ~~~~~~g~~~~~e~I~it~G~~~~l~~~~~~~~~~Gd~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~~~------~~--~  151 (400)
                      .+    |    -++|++|.-+..+=..++..++.|||.| ..+-.|..-+.-+++.|++++.+++++..      -|  .
T Consensus        90 if----g----~~~viPtHQGRaAE~IL~~~l~k~G~~v-p~N~hFdTTrahie~~G~~~~dl~~~ea~d~~~~~pFKGN  160 (459)
T PRK13237         90 YY----G----FKHVVPTHQGRGAENLLSRIAIKPGQYV-PGNMYFTTTRYHQELNGGIFVDIIIDEAHDAQSLHPFKGN  160 (459)
T ss_pred             HC----C----CCEEEECCCCHHHHHHHHHHHCCCCCEE-CCCCCCCCHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCC
T ss_conf             72----9----9524066776668999999971589895-7886866408999965987874135202586778896887


Q ss_pred             CHHHHHHCCCCC----CCCCEEECCCCC-CCCCCCCCCCCCCCCCCCCCCCCCEEECCCCC-C---CCCC---CCCCCCC
Q ss_conf             103331000122----122012113542-10000123333211122333332011101221-1---0000---0122332
Q gi|254780602|r  152 VSPEKLEQAITP----KTKWLFLNSPSN-PSGVVYSQNRLRALADVLVRNPHVHIISDDIY-E---HIVY---RNCQFSN  219 (400)
Q Consensus       152 ~d~~~l~~~i~~----~~k~i~l~nP~N-PTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y-~---~l~~---~~~~~~s  219 (400)
                      +|++.|++.|.+    +...|++.--|| -.|+=.|-+.++++.++| ++|++.++.|.+= .   .|+-   ++..-.|
T Consensus       161 ~Dl~kLe~~i~~~g~~~I~~v~~tiTnN~~GGQPVSm~Nir~v~~la-~~~gipl~lDaaRfaENAyFIk~RE~gy~~~s  239 (459)
T PRK13237        161 VDLDKLQKLIDEVGAENIAYICLAVTVNLAGGQPVSMANMRAVRELC-DKHGIKVFFDATRCVENAYFIKEREEGYQDKS  239 (459)
T ss_pred             CCHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCHHHHHHHHHHH-HHCCCCEEEEHHHHHHHHHHHHHCCCCCCCCC
T ss_conf             79999999998748556008999985268788064689999999999-98099699876678876899983442014899


Q ss_pred             CCCCCCCCCCE-EEEECCCCCCCCCCCCCCCCCCC-HHHHHHHHHHHCCCC-----CCCCCCCCCCCCCCCCCCC--CCC
Q ss_conf             22111233322-57414654432234454442211-012268753100122-----2332222222222223467--643
Q gi|254780602|r  220 IVNVEPSLYER-TLVVNGVSKAYAMTGLRIGYAAG-ALSLIKSMIVLQGQQ-----TSGACSIAQWAAVEALNGP--QDF  290 (400)
Q Consensus       220 ~~~~~~~~~~~-~i~~~S~SK~~~~~G~RiG~~v~-~~~li~~l~~~~~~~-----~~~~~~~~q~a~~~~l~~~--~~~  290 (400)
                      +..+..++.+. -...-|.-|...+.  .-||+.. ++++.+++....-..     ..+++.--..+++..|.+.  ++|
T Consensus       240 i~eI~rEmfs~aDg~tmSaKKD~~vn--iGG~ia~~d~~l~~~~~~~~i~~EGf~TYGGlagRDmeAlA~GL~E~~de~y  317 (459)
T PRK13237        240 IKEILKEMFSYADGATMSGKKDCLVN--IGGFLAMNDDELFQEAKELVVVYEGMPSYGGMAGRDMEAMAIGIEESVQDDY  317 (459)
T ss_pred             HHHHHHHHHHHHHEEEEEECCCCCCC--CCCEEEECCHHHHHHHHHHEEECCCCCCCCCCCHHHHHHHHCCHHHHCCHHH
T ss_conf             99999999744027999832025346--5567985779999999855112058755456226469999634375436799


Q ss_pred             CCCCCCCCCCCCCCHHHHHHCCCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEEC-CC-CC
Q ss_conf             22222211000000024553047760330274089986264102332113322489899999999873979983-50-22
Q gi|254780602|r  291 VVNNRKIFEYRRDLCVAQLQGVPGIRYMIPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQ-GS-SF  368 (400)
Q Consensus       291 ~~~~~~~~~~~r~~~~~~L~~~~g~~~~~p~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~p-G~-~F  368 (400)
                      +....    ..-+++.+.|.+. |+.+..|-||--+++|...+.... +.  .......++..|..+.||-.+- |+ .|
T Consensus       318 l~~Ri----~qv~yl~~~L~~~-GVPvv~P~GGHav~iDA~~fLPhi-p~--~~fPa~aLa~~LY~~~GIR~~E~Gs~~~  389 (459)
T PRK13237        318 IRHRI----GQVRYLGEKLLAA-GVPIVEPVGGHAVFLDARRFLPHI-PQ--DQFPAQALAAELYIDSGVRSMERGIVSA  389 (459)
T ss_pred             HHHHH----HHHHHHHHHHHHC-CCCEECCCCCEEEEEEHHHHCCCC-CH--HHCCHHHHHHHHHHHCCCCEEEECCHHC
T ss_conf             99889----9999999999987-997036898528997467756899-80--3392999999999971934685401011


Q ss_pred             CCC-----------CEEEEEEEC---CH---HHHHHHHHHHHHHHH
Q ss_conf             899-----------728999629---99---999999999999998
Q gi|254780602|r  369 GHG-----------PSIRISYAV---SD---AILEEACVRIKRFCH  397 (400)
Q Consensus       369 g~~-----------~~iRis~~~---~~---e~l~~al~rl~~~l~  397 (400)
                      |.+           .-+|+++-.   +.   +-+.+++..+.+=-+
T Consensus       390 grdp~tg~~~~~~~ElvRLAiPRRvYT~sH~dyva~~l~~l~~~r~  435 (459)
T PRK13237        390 GRDPKTGENHYPKLELVRLTIPRRVYTYAHMDVVAESVIKLYKHRE  435 (459)
T ss_pred             CCCCCCCCCCCCCCCEEEEECCCHHCCHHHHHHHHHHHHHHHHHHH
T ss_conf             6688875656876333677235020358899999999999996487


No 287
>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase; InterPro: IPR011821   Proteins in this entry are important in the interconversion of the sulphur-containing amino acids L-cysteine and L-methionine in bacteria. In bacteria, inorganic sulphur is reduced to sulphide, which is then used to displace the acetyl group of O-acetyl-L-serine to form the essential amino acid L-cysteine. Biosynthesis of L-methionine then occurs via the transsulphuration pathway which involves the sequential action of two pyridoxal 5'-phosphate (PLP) enzymes, cystathionine gamma-synthase (CGS) and cystathionine beta-lyase (CBL). Firstly CGS catalyses the formation of the intermediate cystathione from a homoserine ester and L-cysteine. This intermediate is then converted by CBL to L-homoserine, which is subsequently methylated by methionine synthase to form L-methionine. For more information see .   The CGS enzyme (P00935 from SWISSPROT) from Escherichia coli is, like other CGS enzymes, a homotetramer composed of two catalytically active dimers . The active site of each dimer is found at the interface between the monomers and involves residues from each monomer. Catalysis occurs by alpha,gamma-elimination/replacement reactions..
Probab=99.18  E-value=1.3e-11  Score=90.74  Aligned_cols=241  Identities=15%  Similarity=0.216  Sum_probs=136.1

Q ss_pred             EECCC--CCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHH-CCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             66565--8974988999999999998388756998778989999999986421-01333322332334543333222222
Q gi|254780602|r   34 LCLTA--GEPDFDMPENVKYAVVRAMERGETKYTAVAGISPLREAIVEKFRRD-NDLHYTSDQIIVGTGAKHVIFNALMA  110 (400)
Q Consensus        34 i~l~~--G~p~~~~p~~i~~a~~~al~~~~~~Y~~~~G~~~lR~aia~~~~~~-~g~~~~~e~I~it~G~~~~l~~~~~~  110 (400)
                      |.||.  +++.|..|+             .+-|+- .|.| .|.-+.+=+.+. .|-     +=|||+-++.||.++..+
T Consensus        26 IyLSttY~F~gF~~PR-------------~yDYsR-sGNP-TRd~l~~aLA~LE~G~-----~AVvT~~GMsAI~L~~~~   85 (383)
T TIGR02080        26 IYLSTTYNFAGFNEPR-------------AYDYSR-SGNP-TRDILQQALAELEGGA-----GAVVTNSGMSAIDLVTTA   85 (383)
T ss_pred             CCCCCCCCCCCCCCCC-------------CCCCCC-CCCC-CHHHHHHHHHHHHCCC-----CCEECCCHHHHHHHHHHH
T ss_conf             6356676755677798-------------766688-9897-5658999999984899-----825668568988766431


Q ss_pred             CCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCC-CCCEEECCCCCCCCCCCCCCCCCC
Q ss_conf             23322322223333232-2222222222222222222232221033310001221-220121135421000012333321
Q gi|254780602|r  111 TVNMGDEVLIPRPYWVS-YPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQAITPK-TKWLFLNSPSNPSGVVYSQNRLRA  188 (400)
Q Consensus       111 ~~~~Gd~Vlv~~P~y~~-y~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~-~k~i~l~nP~NPTG~v~s~~~l~~  188 (400)
                      +++|+|=|+.|-=||.. |+-.-.++......+.....    -|.+.|++++.++ +|+|++=+|+||.=.|.+   +++
T Consensus        86 lL~pdDLlvAPHDCYGGtYRLl~~lA~kG~~~v~fVDQ----~D~~al~~ALa~kdPKLVlIEtPSNPLlRVVD---I~~  158 (383)
T TIGR02080        86 LLGPDDLLVAPHDCYGGTYRLLNALAKKGQFKVQFVDQ----SDEQALEAALAQKDPKLVLIETPSNPLLRVVD---IAK  158 (383)
T ss_pred             EECCCCEEEECCCCCCCHHHHHHHHHHCCCEEEEEEEC----CHHHHHHHHHHHCCCCEEEEECCCCCCCHHHH---HHH
T ss_conf             20789768804326770488886452078338998607----62899999997469847998679988521888---999


Q ss_pred             CCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCC-CCCCCCCC-HHHHHHHHHHHCC
Q ss_conf             112233333201110122110000012233222111233322574146544322344-54442211-0122687531001
Q gi|254780602|r  189 LADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTG-LRIGYAAG-ALSLIKSMIVLQG  266 (400)
Q Consensus       189 i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~~~G-~RiG~~v~-~~~li~~l~~~~~  266 (400)
                      ||+. ++..|..+++|..+  |   ..-+...+.+-.+     ++++|.||..+-=. .=.|.+++ ++.+.+.+..-..
T Consensus       159 lc~L-a~~~G~~vvVDNTF--L---sP~lQ~PL~LGAD-----~V~HS~TKYlNGHSDVi~GaVIaKd~q~~e~L~WW~N  227 (383)
T TIGR02080       159 LCKL-AKAVGAVVVVDNTF--L---SPILQQPLSLGAD-----LVIHSTTKYLNGHSDVIAGAVIAKDPQLAEELAWWAN  227 (383)
T ss_pred             HHHH-HHHCCEEEEEECCC--C---CHHHCCCCCHHCC-----EEHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf             9988-76188389985521--6---7767275301111-----3011111000340343121240147122344333430


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCE
Q ss_conf             22233222222222222346764322222211000000024553047760
Q gi|254780602|r  267 QQTSGACSIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQGVPGIR  316 (400)
Q Consensus       267 ~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~~~~~L~~~~g~~  316 (400)
                      ........+--+..+..|+   ....++ ..-+++.+.+.+.|.+.|-++
T Consensus       228 ~lG~tG~aFDSY~tLRGlR---TL~~Rm-~~~qrnA~~Iv~yL~~~P~V~  273 (383)
T TIGR02080       228 ALGVTGGAFDSYLTLRGLR---TLAARM-RSQQRNAQTIVEYLQTQPLVK  273 (383)
T ss_pred             CCCCCCCHHHHHHHHHHHH---HHHHHH-HHHHHHHHHHHHHHHCCCCEE
T ss_conf             0255444346889986788---888888-888788999999984489402


No 288
>PRK13580 serine hydroxymethyltransferase; Provisional
Probab=99.17  E-value=1.7e-09  Score=77.85  Aligned_cols=330  Identities=13%  Similarity=0.021  Sum_probs=181.6

Q ss_pred             EECCCCCCCCCCCHHHHHHHHHHHHCCC-CCCCCCC---C---CHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             6656589749889999999999983887-5699877---8---9899999999864210133332233233454333322
Q gi|254780602|r   34 LCLTAGEPDFDMPENVKYAVVRAMERGE-TKYTAVA---G---ISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFN  106 (400)
Q Consensus        34 i~l~~G~p~~~~p~~i~~a~~~al~~~~-~~Y~~~~---G---~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l~~  106 (400)
                      |.|=..|. + +++.|++++...+.+.. =|||.-+   |   ..+.-....++.++.||.+  --||=..+|++ |...
T Consensus        54 l~LIASEN-~-~S~aV~ea~gS~ltnKYAEGyPG~RYY~Gce~vD~iE~lai~rak~LF~a~--~aNVQP~SGs~-AN~a  128 (493)
T PRK13580         54 LKLIASEN-Y-SSLAVQLAMGNLLTDKYAEGTPGHRFYAGCQNVDAIEWEAAEHARELFGAE--HAYVQPHSGAD-ANLV  128 (493)
T ss_pred             CEEEECCC-C-CCHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC--CCCCCCCCCHH-HHHH
T ss_conf             66973488-7-889999985673101245889986323775779999999999999983898--50327787607-7899


Q ss_pred             CCCCCC-----CCC--------------------------CCCCCCCCCCCCCCC---CCCC--CCCCCCCCCCCCCCCC
Q ss_conf             222223-----322--------------------------322223333232222---2222--2222222222222322
Q gi|254780602|r  107 ALMATV-----NMG--------------------------DEVLIPRPYWVSYPD---MVAL--CGGIPVFVDTQQDDNF  150 (400)
Q Consensus       107 ~~~~~~-----~~G--------------------------d~Vlv~~P~y~~y~~---~~~~--~g~~~~~v~~~~~~~~  150 (400)
                      ++.+++     +||                          |+|+-.+-.-..|..   ....  ...+.++++++++.+ 
T Consensus       129 vy~All~~~v~~Pgl~~~g~~~~~~l~~~~~~~~~~~~g~d~imgl~L~~GGHLTHG~~~n~sg~~~~~~~Y~vd~et~-  207 (493)
T PRK13580        129 AFWAILAHKVEAPALSKLGAKTVNDLTEEEWEELRAELGNQRLLGMSLDSGGHLTHGFRPNISGKMFRQRSYGVDPDTG-  207 (493)
T ss_pred             HHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCC-
T ss_conf             9999860002486422334333232330122222024678868705888786633699656342268878753663348-


Q ss_pred             CCHHHHHHCCC-CCCCCCEEECCCCCCCCCCCCCC-CCCCCCCCCCCCCCCEEECCCCC-CCCCCCCC--CCCCCCCCCC
Q ss_conf             21033310001-22122012113542100001233-33211122333332011101221-10000012--2332221112
Q gi|254780602|r  151 QVSPEKLEQAI-TPKTKWLFLNSPSNPSGVVYSQN-RLRALADVLVRNPHVHIISDDIY-EHIVYRNC--QFSNIVNVEP  225 (400)
Q Consensus       151 ~~d~~~l~~~i-~~~~k~i~l~nP~NPTG~v~s~~-~l~~i~~~~a~~~~i~ii~De~Y-~~l~~~~~--~~~s~~~~~~  225 (400)
                      .+|.|++++.. ..|+|+|+.-      ++.|++. +++++.++| ++-+.+++.|-+| +.|+=.+.  .+++....  
T Consensus       208 ~IDyD~~~~~A~~~kPKlII~G------~SaYpr~idf~~freIA-deVGA~LmaDiAHiaGLVA~g~~~~h~sP~~~--  278 (493)
T PRK13580        208 LLDYDEIAALAREFKPLVLVAG------YSAYPRRVNFAKLREIA-DEVGAVLMVDMAHFAGLVAGKVFTGDEDPVPH--  278 (493)
T ss_pred             CCCHHHHHHHHHHCCCCEEEEC------CCCCCCCCCHHHHHHHH-HHCCCEEEEEHHHHHHHHHCCCCCCCCCCCCC--
T ss_conf             4089999999997499889977------62465644879999999-97197898105667677642545689995133--


Q ss_pred             CCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCC-CCCCC-CCCCCCCCCCCCCCCCC
Q ss_conf             33322574146544322344544422110122687531001222332222222222-22346-76432222221100000
Q gi|254780602|r  226 SLYERTLVVNGVSKAYAMTGLRIGYAAGALSLIKSMIVLQGQQTSGACSIAQWAAV-EALNG-PQDFVVNNRKIFEYRRD  303 (400)
Q Consensus       226 ~~~~~~i~~~S~SK~~~~~G~RiG~~v~~~~li~~l~~~~~~~~~~~~~~~q~a~~-~~l~~-~~~~~~~~~~~~~~~r~  303 (400)
                          --|+..|.-|++  .|-|-|.+...+++.+.+.+..-....+ +..-+.|+. .+|.+ ....+.+-.+...+|.+
T Consensus       279 ----ADvVTtTTHKTL--rGPRGGiIl~~~e~~~~Id~avPg~QGG-P~~h~IAakAvaf~EA~~peFk~Y~~qVv~NAk  351 (493)
T PRK13580        279 ----ADIVTTTTHKTL--RGPRGGLVLAKKEYAEAVDKGCPLVLGG-PLPHVMAAKAVALAEARTPDFKKYAHRVVDNAR  351 (493)
T ss_pred             ----CCEEECCCCCCC--CCCCCCEEEECHHHHHHHCCCCCCCCCC-HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_conf             ----515751234456--7888506884647787651038754687-277699999999999727778999999999999


Q ss_pred             CHHHHHHCCCCCEEEECCC--CEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCC-CCCC-----CCEEE
Q ss_conf             0024553047760330274--08998626410233211332248989999999987397998350-2289-----97289
Q gi|254780602|r  304 LCVAQLQGVPGIRYMIPDG--AFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGS-SFGH-----GPSIR  375 (400)
Q Consensus       304 ~~~~~L~~~~g~~~~~p~g--~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~-~Fg~-----~~~iR  375 (400)
                      .+.+.|.+. |+++.. .|  +-.+.+|+...          ..+. .-++.+|++.||.+.--. .|..     +..||
T Consensus       352 aLA~~L~~~-G~~vvs-GGTdnHlvLvDl~~~----------g~tG-~~ae~~Le~~gI~vNKN~iP~D~~~p~~~SGIR  418 (493)
T PRK13580        352 ALAEGFLKR-GARLVT-GGTDNHLLLIDVTSF----------GLTG-RQAEDALLDVGIVTNRNSIPSDPNGAWYTSGIR  418 (493)
T ss_pred             HHHHHHHHC-CCEEEC-CCCCCCEEEEECCCC----------CCCH-HHHHHHHHHCCEEEECCCCCCCCCCCCCCCCCE
T ss_conf             999999988-994852-888877588856778----------9988-999999987793871688989998898886411


Q ss_pred             EEEE------CCHHHHHHHHHHHHHHHHH
Q ss_conf             9962------9999999999999999986
Q gi|254780602|r  376 ISYA------VSDAILEEACVRIKRFCHS  398 (400)
Q Consensus       376 is~~------~~~e~l~~al~rl~~~l~~  398 (400)
                      |.-.      -.++++++..+-|.+.++.
T Consensus       419 iGtpa~TtRGm~e~em~~ia~~I~~~l~~  447 (493)
T PRK13580        419 LGTPALTTLGMGSDEMDEVAELIVKVLRN  447 (493)
T ss_pred             ECCHHHHHCCCCHHHHHHHHHHHHHHHHC
T ss_conf             16666761899989999999999999955


No 289
>PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated
Probab=99.17  E-value=9.3e-10  Score=79.50  Aligned_cols=340  Identities=15%  Similarity=0.141  Sum_probs=164.5

Q ss_pred             HCCCCEEECCCCC--CCCC-CCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCC-CCCCCC-CCCC
Q ss_conf             8699726656589--7498-899999999999838875699877898999999998642101333322-332334-5433
Q gi|254780602|r   28 SKGIDVLCLTAGE--PDFD-MPENVKYAVVRAMERGETKYTAVAGISPLREAIVEKFRRDNDLHYTSD-QIIVGT-GAKH  102 (400)
Q Consensus        28 ~~g~~ii~l~~G~--p~~~-~p~~i~~a~~~al~~~~~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~e-~I~it~-G~~~  102 (400)
                      ..|+..||+..|-  .++. -+|.|.+|+++.++.....++..... +.+..+++.+.+..-.+-.-+ .|++++ .+++
T Consensus        36 ~dG~~ylD~~sg~~~~~lGH~~p~I~~Ai~~ql~~~~~~h~~~~~~-~~~~~l~e~l~~~il~p~~l~~~v~F~~~SGSE  114 (426)
T PRK09264         36 EDGKEYIDFFAGAGALNYGHNNPVLKQALIDYLQRDGITHGLDMHT-EAKREFLETFERLILKPRGLDYKVQFTGPTGTN  114 (426)
T ss_pred             CCCCEEEECCCCHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCC-HHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHH
T ss_conf             9989999837059853005897999999999998548600134212-899999999999735755798048955898227


Q ss_pred             CCCCCCCCCC-CCC-CCCCCCCCCCCCCCCC-CCCCCC------------CCCCCCCCCCCCCC---CHHHHHHCCCCC-
Q ss_conf             3322222223-322-3222233332322222-222222------------22222222223222---103331000122-
Q gi|254780602|r  103 VIFNALMATV-NMG-DEVLIPRPYWVSYPDM-VALCGG------------IPVFVDTQQDDNFQ---VSPEKLEQAITP-  163 (400)
Q Consensus       103 ~l~~~~~~~~-~~G-d~Vlv~~P~y~~y~~~-~~~~g~------------~~~~v~~~~~~~~~---~d~~~l~~~i~~-  163 (400)
                      |...++...- ..| ..|+...-+|-..... ....|.            ...++|.+  ..+.   -+.+.+++.+.+ 
T Consensus       115 AvE~AiKlAR~~tgr~~Iis~~~~YHG~T~gals~tg~~~~~~~~~~~~~~~~~~P~~--~~~~~~~~~~~~~e~~l~~~  192 (426)
T PRK09264        115 AVEAALKLARKVTGRTNIISFTNGFHGMTLGALAVTGNAHKRGGAGVPLNHVTFMPYD--GYFGGDVDTLAYLEKLLEDS  192 (426)
T ss_pred             HHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEECCCCCCCCCCCCCCCCCEECCCC--CCCCCCHHHHHHHHHHHHHH
T ss_conf             9999999999834998599983775787414555037843457788997881772788--86678701699999998762


Q ss_pred             -----CCCCEEECCC-CCCCCCC-CCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC-CCCCCCCCCCCEEEEEC
Q ss_conf             -----1220121135-4210000-12333321112233333201110122110000012233-22211123332257414
Q gi|254780602|r  164 -----KTKWLFLNSP-SNPSGVV-YSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFS-NIVNVEPSLYERTLVVN  235 (400)
Q Consensus       164 -----~~k~i~l~nP-~NPTG~v-~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~-s~~~~~~~~~~~~i~~~  235 (400)
                           ++.++++ -| +--.|.. .+++-+++|-++| +++|+++|.||+...+.=.|.-+. .-..+.|+     |+  
T Consensus       193 ~~g~d~iAAvii-EPiqg~gG~~~~p~~yl~~lr~lc-~~~giLlI~DEV~tGfGRTG~~fa~e~~gv~PD-----iv--  263 (426)
T PRK09264        193 SSGVDLPAAVIV-ETVQGEGGLNVASAEWLQRLEKLC-RKHDILLIVDDIQAGCGRTGTFFSFEEAGIKPD-----IV--  263 (426)
T ss_pred             CCCCCCEEEEEE-CCCCCCCCCCCCCHHHHHHHHHHH-HHHCCEEEEEECCCCCCCCCCCCCCCCCCCCCC-----EE--
T ss_conf             378886169998-786688898249989999999999-870750673320107786778302104799987-----79--


Q ss_pred             CCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCCCHHHHHHCC
Q ss_conf             6544322344544422110122687531001222332222222222223467---6432222221100000002455304
Q gi|254780602|r  236 GVSKAYAMTGLRIGYAAGALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGP---QDFVVNNRKIFEYRRDLCVAQLQGV  312 (400)
Q Consensus       236 S~SK~~~~~G~RiG~~v~~~~li~~l~~~~~~~~~~~~~~~q~a~~~~l~~~---~~~~~~~~~~~~~~r~~~~~~L~~~  312 (400)
                      +++|..+-.|+-+|.+++.+++ +.+..-....+.+.+.+...++.+.|+.-   +.+.+    ..+++-+++.+.|+++
T Consensus       264 ~~gKglsGgg~P~sav~~~~e~-d~~~~g~h~~Tf~Gnp~a~aaa~a~L~~~~~~~~l~~----~v~~~g~~l~~~L~~l  338 (426)
T PRK09264        264 TLSKSISGYGLPMALVLIKPEL-DQWKPGEHNGTFRGNNLAFVTATAALETYWSDDAFEK----EVKRKGELVRERLEEI  338 (426)
T ss_pred             EECHHHCCCCCCEEEEEECHHH-CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCHHHH----HHHHHHHHHHHHHHHH
T ss_conf             8864336897104999973444-0467754466778882999999999999987147999----9999999999999999


Q ss_pred             ----CC-CEEEECCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCCCCEEEEE--EECCHHHH
Q ss_conf             ----77-603302740899862641023321133224898999999998739799835022899728999--62999999
Q gi|254780602|r  313 ----PG-IRYMIPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGHGPSIRIS--YAVSDAIL  385 (400)
Q Consensus       313 ----~g-~~~~~p~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~iRis--~~~~~e~l  385 (400)
                          ++ +.-++..| +++=+++.+.           ....+++..++ +.||++.+.-.  .++.||++  +..+++++
T Consensus       339 ~~~~~~~v~dvRG~G-lm~giel~~~-----------~~~~~i~~~~~-~~Gll~~~~g~--~~~vir~~PPL~it~~ei  403 (426)
T PRK09264        339 AAEYPGLGLSVRGRG-MMQGIDFGDG-----------ELAGKICRRAF-ENGLIIETSGP--NDEVVKLLPPLTIDEEEL  403 (426)
T ss_pred             HHHCCCCEEEEEEEE-EEEEEEECCH-----------HHHHHHHHHHH-HCCCEEEECCC--CCCEEEEECCEECCHHHH
T ss_conf             976899627888602-8999993776-----------88999999999-78988964489--998899979920889999


Q ss_pred             HHHHHHHHHHHHHC
Q ss_conf             99999999999860
Q gi|254780602|r  386 EEACVRIKRFCHSL  399 (400)
Q Consensus       386 ~~al~rl~~~l~~l  399 (400)
                      ++++++|++.++.+
T Consensus       404 d~~~~~l~~al~~v  417 (426)
T PRK09264        404 EEGLDILEEAVAEV  417 (426)
T ss_pred             HHHHHHHHHHHHHH
T ss_conf             99999999999999


No 290
>TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase; InterPro: IPR012773    Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (2.6.1.76 from EC) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore (Q9Z3R2 from SWISSPROT) or 1,3-diaminopropane (P44951 from SWISSPROT) biosynthesis. Ectoine is a compatible solute particularly effective in conferring salt tolerance.; GO: 0030170 pyridoxal phosphate binding, 0047307 diaminobutyrate-pyruvate transaminase activity, 0019491 ectoine biosynthetic process.
Probab=99.09  E-value=4.6e-10  Score=81.37  Aligned_cols=213  Identities=17%  Similarity=0.178  Sum_probs=122.8

Q ss_pred             HHHHHHCCCCC------CCCCEEECCCCCCCC-CCCCCCCCCCCCCCCCCCCCCEEECCCCCCC-------CCCCCCCCC
Q ss_conf             03331000122------122012113542100-0012333321112233333201110122110-------000012233
Q gi|254780602|r  153 SPEKLEQAITP------KTKWLFLNSPSNPSG-VVYSQNRLRALADVLVRNPHVHIISDDIYEH-------IVYRNCQFS  218 (400)
Q Consensus       153 d~~~l~~~i~~------~~k~i~l~nP~NPTG-~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~-------l~~~~~~~~  218 (400)
                      +.+.+++.+.+      .|-||+|=+=+==-| .+-|.+-|++|-++| |+|||++|+||+=..       |.|+.    
T Consensus       177 ~~~Yfe~~L~D~sSGvd~PAAvILETVQGEGGiNvAs~eWLq~l~~lC-r~~DILLIVDDIQaGCGRTG~FFSFE~----  251 (413)
T TIGR02407       177 TIAYFEKLLEDSSSGVDLPAAVILETVQGEGGINVASKEWLQRLEKLC-RRHDILLIVDDIQAGCGRTGTFFSFEP----  251 (413)
T ss_pred             HHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHH-HHCCCEEEEEEEECCCCCCCCCCCCCC----
T ss_conf             289999861788898476725898110375770312355799999999-864986877317418888789645344----


Q ss_pred             CCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC-CC-----CCCC
Q ss_conf             22211123332257414654432234454442211012268753100122233222222222222346-76-----4322
Q gi|254780602|r  219 NIVNVEPSLYERTLVVNGVSKAYAMTGLRIGYAAGALSLIKSMIVLQGQQTSGACSIAQWAAVEALNG-PQ-----DFVV  292 (400)
Q Consensus       219 s~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~v~~~~li~~l~~~~~~~~~~~~~~~q~a~~~~l~~-~~-----~~~~  292 (400)
                        +++.||     |++  +||+.+-.|+-++-+.-.+++ +...--..+.++--+.+.=.+|.++|+. +.     .++.
T Consensus       252 --AgI~PD-----iVc--LSKSisG~GLPlal~L~kPe~-D~W~PGEHNGTFRGNNlAFVtA~aAL~~yW~Dd~f~~~v~  321 (413)
T TIGR02407       252 --AGIEPD-----IVC--LSKSISGYGLPLALVLIKPEL-DVWKPGEHNGTFRGNNLAFVTATAALEYYWSDDAFEKAVQ  321 (413)
T ss_pred             --CCCCCC-----EEE--EECCCCCCCHHHHHHHHCCCC-CCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf             --677566-----178--502003551268999735456-7467887788646652789999999998489626899999


Q ss_pred             CCCCCCCCCCCCHHHHHHCCCC-CEEEECCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCCC
Q ss_conf             2222110000000245530477-603302740899862641023321133224898999999998739799835022899
Q gi|254780602|r  293 NNRKIFEYRRDLCVAQLQGVPG-IRYMIPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGHG  371 (400)
Q Consensus       293 ~~~~~~~~~r~~~~~~L~~~~g-~~~~~p~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~  371 (400)
                      +.-+..+++.+.+.+...+. + .+ .+.. ||..=+++.+           ..-..+.+...+++ |+++=   .-|++
T Consensus       322 ~~s~~~~~~l~~~~~~~~~~-~~~~-~RGR-Glm~Gl~~~~-----------~~~A~~i~~~aF~~-GLiiE---tsGp~  383 (413)
T TIGR02407       322 RKSEIIQERLDEIVAEFPEL-IEKS-VRGR-GLMQGLECGD-----------GDLAGKIAKAAFEN-GLIIE---TSGPE  383 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-CCCC-CCCC-CEEEECCCCC-----------HHHHHHHHHHHHHC-CCEEE---EECCC
T ss_conf             99999999999999874552-1311-0452-0142000477-----------24689999998646-83898---71889


Q ss_pred             CEE-EE--EEECCHHHHHHHHHHHHHHHHH
Q ss_conf             728-99--9629999999999999999986
Q gi|254780602|r  372 PSI-RI--SYAVSDAILEEACVRIKRFCHS  398 (400)
Q Consensus       372 ~~i-Ri--s~~~~~e~l~~al~rl~~~l~~  398 (400)
                      .-| -+  ++++++|+|++||+-|+++++.
T Consensus       384 DeV~K~lPpLTI~~~~L~~GL~IL~~a~~~  413 (413)
T TIGR02407       384 DEVIKLLPPLTIDEETLQQGLDILEQAVEE  413 (413)
T ss_pred             CCEEEECCCCCCCHHHHHHHHHHHHHHHHC
T ss_conf             845870388988878899999999999719


No 291
>PRK13238 tnaA tryptophanase; Provisional
Probab=99.09  E-value=3.2e-10  Score=82.33  Aligned_cols=361  Identities=17%  Similarity=0.227  Sum_probs=206.8

Q ss_pred             HHCCCCHHHHHHHHHHHHHHCCCCEEECCCCCC--CC-------CCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             738975899999999999986997266565897--49-------889999999999983887569987789899999999
Q gi|254780602|r    9 RRVQPSATLVAAQRVRDLRSKGIDVLCLTAGEP--DF-------DMPENVKYAVVRAMERGETKYTAVAGISPLREAIVE   79 (400)
Q Consensus         9 ~~l~~s~~~~~~~~~~~~~~~g~~ii~l~~G~p--~~-------~~p~~i~~a~~~al~~~~~~Y~~~~G~~~lR~aia~   79 (400)
                      +-++|=......++.+.++.+|-+...|-..+.  |+       .....-..    ++..|.-.|+.++....|++++.+
T Consensus        14 k~Ve~I~~~treeR~~al~~AgyN~F~L~s~dV~IDlLTDSGT~AMSd~Qwa----amm~gDEsYAGs~sf~~l~~av~d   89 (461)
T PRK13238         14 KMVEPIRLTTREEREEALKEAGYNPFLLKSEDVFIDLLTDSGTGAMSDRQWA----AMMRGDEAYAGSRSYYRLEDAVKD   89 (461)
T ss_pred             EEEEECCCCCHHHHHHHHHHCCCCEECCCCCCEEEEEEECCCCCCCCHHHHH----HHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf             5786448999999999999828985216646635764215881304599999----998422343135549999999998


Q ss_pred             HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC------CCC--C
Q ss_conf             86421013333223323345433332222222332232222333323222222222222222222222------322--2
Q gi|254780602|r   80 KFRRDNDLHYTSDQIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDMVALCGGIPVFVDTQQD------DNF--Q  151 (400)
Q Consensus        80 ~~~~~~g~~~~~e~I~it~G~~~~l~~~~~~~~~~Gd~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~~------~~~--~  151 (400)
                      .+    |    -+.+++|.-+..+=..++..++.+|+ |+..+-.|..-+.-+++.|++++.++.++.      .-|  .
T Consensus        90 i~----G----~~~~iPtHQGRaAE~Ilf~~l~k~g~-~vp~N~HFdTTrahie~~G~~~~dl~~~ea~d~~~~~pFKGN  160 (461)
T PRK13238         90 IF----G----YEYTIPTHQGRAAEQILFPVLIKKGD-VVPSNYHFDTTRAHIELNGGTAVNLVIDEALDTGSRYPFKGN  160 (461)
T ss_pred             HC----C----CCEECCCCCCHHHHHHHHHHHCCCCC-EECCCCCCCCCHHHHHHCCCEEEEEECHHHCCCCCCCCCCCC
T ss_conf             72----9----86445456637799999998646997-857887856507888853986773054431495767897887


Q ss_pred             CHHHHHHCCCCC----CCCCEEECCCCCC-CCCCCCCCCCCCCCCCCCCCCCCEEECCCCC-CC---CCC---CCCCCCC
Q ss_conf             103331000122----1220121135421-0000123333211122333332011101221-10---000---0122332
Q gi|254780602|r  152 VSPEKLEQAITP----KTKWLFLNSPSNP-SGVVYSQNRLRALADVLVRNPHVHIISDDIY-EH---IVY---RNCQFSN  219 (400)
Q Consensus       152 ~d~~~l~~~i~~----~~k~i~l~nP~NP-TG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y-~~---l~~---~~~~~~s  219 (400)
                      +|++.|++.|.+    +...|+++--||- .|+=.|-+.++++.++| +++++.++.|.+= .+   |+-   .+..-.|
T Consensus       161 ~Dl~kLe~~i~~~g~~~I~~v~~tiTnN~~GGQPVSm~Nir~v~~la-~~~~ip~~lDaaRfaENAyFIk~RE~gY~d~s  239 (461)
T PRK13238        161 FDLEKLEALIEEVGADNIPFIVMTITNNSAGGQPVSMANLRAVYEIA-KKYGIPVVLDAARFAENAYFIKQREPGYKDKS  239 (461)
T ss_pred             CCHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHH-HHCCCCEEEEHHHHHHHHHHHHHCCCCCCCCC
T ss_conf             79999999998738446548999986268788164689999999999-98299599865667664578873253125799


Q ss_pred             CCCCCCCCCC--EEEEECCCCCCCCCCCCCCC-CCCCHH--HHHHHHHHHCCC-----CCCCCCCCCCCCCCCCCCCC--
Q ss_conf             2211123332--25741465443223445444-221101--226875310012-----22332222222222223467--
Q gi|254780602|r  220 IVNVEPSLYE--RTLVVNGVSKAYAMTGLRIG-YAAGAL--SLIKSMIVLQGQ-----QTSGACSIAQWAAVEALNGP--  287 (400)
Q Consensus       220 ~~~~~~~~~~--~~i~~~S~SK~~~~~G~RiG-~~v~~~--~li~~l~~~~~~-----~~~~~~~~~q~a~~~~l~~~--  287 (400)
                      +..+..++.+  ..+++ |.-|.- +.  ++| ++....  ++.+++....-.     +..+++.--..+++..|.+.  
T Consensus       240 i~eI~rEmfs~aDg~tm-SaKKD~-~v--niGG~l~~~d~~~l~~~~~~~~i~~EGf~TYGGlaGRDmeAlAvGL~E~~d  315 (461)
T PRK13238        240 IKEITREMFSYADGLTM-SAKKDA-MV--NIGGLLCFKDDSDLYTKCRTLCILYEGFPTYGGLAGRDMEALAVGLYEGMD  315 (461)
T ss_pred             HHHHHHHHHHHHHEEEE-EECCCC-EE--CCCCEEEECCHHHHHHHHHHHEEECCCCCCCCCCCHHHHHHHHCCHHHHCC
T ss_conf             99999999845237999-833012-10--442289966759999998744242058756688338779999735787607


Q ss_pred             CCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEEC-CC
Q ss_conf             64322222211000000024553047760330274089986264102332113322489899999999873979983-50
Q gi|254780602|r  288 QDFVVNNRKIFEYRRDLCVAQLQGVPGIRYMIPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQ-GS  366 (400)
Q Consensus       288 ~~~~~~~~~~~~~~r~~~~~~L~~~~g~~~~~p~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~p-G~  366 (400)
                      ++|+....    ..-+++.+.|.+. |+.+..|-||--+++|...+... .+.  .......++..|..+.||-.+- |+
T Consensus       316 ~dyl~~Ri----~qv~yLg~~L~~~-GVPvv~P~GGHAv~iDA~~fLPh-ip~--~qfPa~aLa~eLY~~~GIR~vEiGs  387 (461)
T PRK13238        316 EDYLAYRI----AQVEYLGEGLEEA-GVPVVTPAGGHAVFVDAGKFLPH-IPA--EQFPAQALACELYLEAGIRAVEIGS  387 (461)
T ss_pred             HHHHHHHH----HHHHHHHHHHHHC-CCCEECCCCCEEEEEEHHHHCCC-CCH--HHCCHHHHHHHHHHHCCCCEEEECC
T ss_conf             79999779----9999999999977-99705679851899746785679-981--4481899999999972955787500


Q ss_pred             -CCCCC-----------CEEEEEEEC---CH---HHHHHHHHHHHHH
Q ss_conf             -22899-----------728999629---99---9999999999999
Q gi|254780602|r  367 -SFGHG-----------PSIRISYAV---SD---AILEEACVRIKRF  395 (400)
Q Consensus       367 -~Fg~~-----------~~iRis~~~---~~---e~l~~al~rl~~~  395 (400)
                       .||.+           .-+|+++-.   +.   +-+.+++..+.+=
T Consensus       388 ~~~grdp~tg~~~~~~~ELvRLAiPRRvYT~sH~dyva~~l~~l~~~  434 (461)
T PRK13238        388 LLLGRDPDTGEQLPAPAELLRLAIPRRVYTQSHMDYVAEALKWVKEN  434 (461)
T ss_pred             HHCCCCCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             12054888766578760000242450003588999999999999956


No 292
>PRK06149 hypothetical protein; Provisional
Probab=99.06  E-value=2.5e-09  Score=76.83  Aligned_cols=326  Identities=12%  Similarity=0.084  Sum_probs=166.4

Q ss_pred             CHHHHHHHHHHHHC--CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCC-CCCCCC
Q ss_conf             99999999999838--87569987789899999999864210133332233233454333322222223-322-322223
Q gi|254780602|r   46 PENVKYAVVRAMER--GETKYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFNALMATV-NMG-DEVLIP  121 (400)
Q Consensus        46 p~~i~~a~~~al~~--~~~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l~~~~~~~~-~~G-d~Vlv~  121 (400)
                      .|.|.+|+.+.+..  ..+.|.... ..+    +|+++....  +-.-+.|+++|++++|...+++..- ..| ..||..
T Consensus       601 hP~v~~A~~~Q~~~L~~~s~~~~~~-~~e----lAerL~~~~--P~~l~~vfF~nSGsEAnE~AlKlAr~~tGr~~iI~~  673 (972)
T PRK06149        601 HPRMAAAAARQWSLLNTNSRFHYAA-VAE----FSERLAALA--PDGLDTVFLVNSGSEANDLAIRLAWAASGGRDVLSV  673 (972)
T ss_pred             CHHHHHHHHHHHHHHCCCCCCCCHH-HHH----HHHHHHHHC--CCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf             9999999999999745176636515-999----999999857--656266985077499999999999996289977999


Q ss_pred             CCCCCCCCCCC-CCC----------CCCC-----CCCCCCCCCC---------CCCHHHH-HHCCCC--CCCCCEEECCC
Q ss_conf             33323222222-222----------2222-----2222222232---------2210333-100012--21220121135
Q gi|254780602|r  122 RPYWVSYPDMV-ALC----------GGIP-----VFVDTQQDDN---------FQVSPEK-LEQAIT--PKTKWLFLNSP  173 (400)
Q Consensus       122 ~P~y~~y~~~~-~~~----------g~~~-----~~v~~~~~~~---------~~~d~~~-l~~~i~--~~~k~i~l~nP  173 (400)
                      .-+|-.-...+ ...          +..+     ++.|-...+.         |.-+.+. +++...  +++-++++ -|
T Consensus       674 ~~ayHG~T~ga~a~s~~~~~~~~~~~~~p~~v~~~~~P~~yr~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~Aa~I~-EP  752 (972)
T PRK06149        674 LEAYHGWTVATDAVSTSIADNPQALTTRPDWVHPVESPNTFRGKFRGADSAADYLRDVVAQLEDLDARGRQLAGFIC-EP  752 (972)
T ss_pred             ECCCCCCCHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEE-EC
T ss_conf             68708826788986334345766767899843660687445677788640789999999999999715896689999-57


Q ss_pred             --CCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCC-CCCCEEEEECCCCCCCCCCCCCCCC
Q ss_conf             --4210000123333211122333332011101221100000122332221112-3332257414654432234454442
Q gi|254780602|r  174 --SNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEP-SLYERTLVVNGVSKAYAMTGLRIGY  250 (400)
Q Consensus       174 --~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~-~~~~~~i~~~S~SK~~~~~G~RiG~  250 (400)
                        .+=-+.+.++.-++++.++| +++|+++|.||+-..+.=.|.-   +++... +.... |+  +++|..+ .|+-+|.
T Consensus       753 I~G~gG~i~~P~gyl~~v~~~c-~~~g~LlI~DEVQtG~GRtG~~---Fwa~e~~gv~PD-Iv--t~aKglg-~G~PlgA  824 (972)
T PRK06149        753 VYGNAGGISLPDGYLRQVYAAV-RARGGVCIADEVQVGYGRLGHY---FWGFEQQGVVPD-II--TMAKGMG-NGHPLGA  824 (972)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHH-HHCCCEEEEECCCCCCCCCCCC---CCHHHHCCCCCC-EE--EECCCCC-CCCCCEE
T ss_conf             6477787379879999999999-9749789961322177857663---004454299987-79--8645555-8866478


Q ss_pred             CCCHHHHHHHHHHHCC-CCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCHHHHHHCC----CCCEEEECCCC
Q ss_conf             2110122687531001-222332222222222223467--6432222221100000002455304----77603302740
Q gi|254780602|r  251 AAGALSLIKSMIVLQG-QQTSGACSIAQWAAVEALNGP--QDFVVNNRKIFEYRRDLCVAQLQGV----PGIRYMIPDGA  323 (400)
Q Consensus       251 ~v~~~~li~~l~~~~~-~~~~~~~~~~q~a~~~~l~~~--~~~~~~~~~~~~~~r~~~~~~L~~~----~g~~~~~p~g~  323 (400)
                      +++.+++.+.+..-.. ..+++-+.++..++.+.|+--  +..++.    -++.-+++.+.|+++    |-+.=++.. |
T Consensus       825 vv~~~eia~~f~~~g~~~sTfgGnPlacAaalavL~vi~~e~L~~n----a~~~G~~l~~~L~~L~~~~p~IgdVRG~-G  899 (972)
T PRK06149        825 VITRREIAEALEAEGYFFSSTGGSPVSCAIGMAVLDVMREEKLQEN----ARRVGDHLKARLEALVDRHPLAGAVHGM-G  899 (972)
T ss_pred             EEECHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHH----HHHHHHHHHHHHHHHHHHCCCEEEEECC-C
T ss_conf             8974999976526886005899898999999999999987369999----9999999999999998619948986226-7


Q ss_pred             EEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCCCCEEEEE--EECCHHHHHHHHHHHHHHHHH
Q ss_conf             899862641023321133224898999999998739799835022899728999--629999999999999999986
Q gi|254780602|r  324 FYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGHGPSIRIS--YAVSDAILEEACVRIKRFCHS  398 (400)
Q Consensus       324 ~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~iRis--~~~~~e~l~~al~rl~~~l~~  398 (400)
                      +|+=+++-.-.....+..+   ....++.++ .+.||++.+.-.+  .+-+||.  ++.+.+++++.++.|.+.|..
T Consensus       900 Lm~GiElV~d~~t~~Pa~~---~~~~i~~~~-~e~Gil~~~~G~~--~nVlki~PPL~i~~e~~D~~l~~l~~vL~E  970 (972)
T PRK06149        900 LYLGVELVRDRQTLEPATE---ETAAICDRL-LELGVIMQPTGDH--LNILKIKPPLCTDRESADFFVDMLDRVLTE  970 (972)
T ss_pred             CEEEEEEECCCCCCCCCHH---HHHHHHHHH-HHCCEEEECCCCC--CCEEEECCCCCCCHHHHHHHHHHHHHHHHC
T ss_conf             2899997016676898889---999999999-9789589427898--887998089467699999999999999855


No 293
>pfam06838 Alum_res Aluminium resistance protein. This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria.
Probab=99.01  E-value=2e-10  Score=83.54  Aligned_cols=198  Identities=20%  Similarity=0.237  Sum_probs=124.2

Q ss_pred             HHHHHHHHHH-HH----CCCCCCCC-CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             9999999999-83----88756998-778989999999986421013333223323345433332222222332232222
Q gi|254780602|r   47 ENVKYAVVRA-ME----RGETKYTA-VAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFNALMATVNMGDEVLI  120 (400)
Q Consensus        47 ~~i~~a~~~a-l~----~~~~~Y~~-~~G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l~~~~~~~~~~Gd~Vlv  120 (400)
                      ..|++|++++ +.    .+.+||+. ..|-..|-+..|+    -+|.+-.-=+.-+.+| +++|..++..+++|||+.+.
T Consensus        28 ~KVL~Af~~~~vs~~hf~~sTGYGy~D~GRd~Le~vyA~----vfgaE~ALVR~q~vSG-THAi~~aLfg~LrPGD~ll~  102 (405)
T pfam06838        28 LKVLNAFQEHRVSDSHFTGSTGYGYDDIGRDTLERVYAR----VFGAEAALVRPQFVSG-THAIATALFGVLRPGDELLY  102 (405)
T ss_pred             HHHHHHHHHCCCCHHHCCCCCCCCCCCCCHHHHHHHHHH----HHCCHHHHCCCCCCCH-HHHHHHHHHHCCCCCCEEEE
T ss_conf             999999998097776668888778776468999999999----9673776503432552-89999999836789987874


Q ss_pred             CC-CCCCCCCCC----------CCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEECCCCCCCCC----CCCCCC
Q ss_conf             33-332322222----------222222222222222232221033310001221220121135421000----012333
Q gi|254780602|r  121 PR-PYWVSYPDM----------VALCGGIPVFVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGV----VYSQNR  185 (400)
Q Consensus       121 ~~-P~y~~y~~~----------~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~k~i~l~nP~NPTG~----v~s~~~  185 (400)
                      .+ .=|......          .+-.|..-..+|+.+++  .+|.+.++++++++||++.+-   --+|.    .++.++
T Consensus       103 itG~PYDTL~eVIGi~g~~~GSL~e~Gv~Y~~v~L~~~g--~~D~~~i~~ai~~~tk~v~IQ---RS~GYs~R~slsi~~  177 (405)
T pfam06838       103 ITGKPYDTLEEVIGIRGEGQGSLKDFGIGYREVPLLENG--KVDWQAVKTAITPNTKLIGIQ---RSKGYAWRPSLTIAE  177 (405)
T ss_pred             CCCCCCHHHHHHHCCCCCCCCCHHHHCCCCEEECCCCCC--CCCHHHHHHHCCCCCEEEEEE---CCCCCCCCCCCCHHH
T ss_conf             489973658987185889988889959660364357789--849999997617564599996---256866688879999


Q ss_pred             CCCCCCCCC-CCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCC--CCCCCCCHHHHHHHHH
Q ss_conf             321112233-3332011101221100000122332221112333225741465443223445--4442211012268753
Q gi|254780602|r  186 LRALADVLV-RNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTGL--RIGYAAGALSLIKSMI  262 (400)
Q Consensus       186 l~~i~~~~a-~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~~~G~--RiG~~v~~~~li~~l~  262 (400)
                      ++++++... .+.|+++++|.+|.+|+- ..+++.. ..       -++.+|+=|+-+ .|+  --||+++.+++++...
T Consensus       178 I~~~i~~vk~~~pd~ivfVDNCYGEFvE-~~EP~~v-GA-------DliaGSLIKNpG-GgiaptGGYIaGk~dlVe~aa  247 (405)
T pfam06838       178 IKEMIKFVKEINPNVIVFVDNCYGEFVE-TKEPTHV-GA-------DLIAGSLIKNPG-GGIAKTGGYIAGKEELVEQAS  247 (405)
T ss_pred             HHHHHHHHHHHCCCEEEEEECCCCCCCC-CCCCCCC-CH-------HHEECCCEECCC-CCCCCCCCEEECHHHHHHHHH
T ss_conf             9999999997689939999788602026-7585301-63-------440120124799-773675777853699999987


Q ss_pred             HH
Q ss_conf             10
Q gi|254780602|r  263 VL  264 (400)
Q Consensus       263 ~~  264 (400)
                      ..
T Consensus       248 ~R  249 (405)
T pfam06838       248 YR  249 (405)
T ss_pred             HH
T ss_conf             52


No 294
>COG1982 LdcC Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism]
Probab=99.01  E-value=2.1e-10  Score=83.41  Aligned_cols=149  Identities=17%  Similarity=0.287  Sum_probs=98.8

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----CCHHHHHHCCCCC--CC-
Q ss_conf             3323345433332222222332232222333323222222222222222222222322----2103331000122--12-
Q gi|254780602|r   93 QIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNF----QVSPEKLEQAITP--KT-  165 (400)
Q Consensus        93 ~I~it~G~~~~l~~~~~~~~~~Gd~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~~~~~----~~d~~~l~~~i~~--~~-  165 (400)
                      .-+++||++.++..++++++.|||.||++..+--...+.+.++|+.|+++....+..|    .++.+.+++.+-+  .. 
T Consensus        88 tyFvvNGTS~ank~vi~a~~~~GD~VLvdRN~HKSi~~glilaGa~Pvyl~p~~np~~gi~ggI~~~~~~~al~~~~~~~  167 (557)
T COG1982          88 TYFVVNGTSTANKAVINAVLTPGDKVLVDRNCHKSIHHGLILAGATPVYLEPSRNPLYGIIGGIPLETFKEALLAHPDAE  167 (557)
T ss_pred             EEEEECCCCHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHCHHHH
T ss_conf             29997782289999998603899989965876378888998748832784177785446537869899879998471304


Q ss_pred             CCEEECCCCCCC--CCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCC
Q ss_conf             201211354210--000123333211122333332011101221100000122332221112333225741465443223
Q gi|254780602|r  166 KWLFLNSPSNPS--GVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAM  243 (400)
Q Consensus       166 k~i~l~nP~NPT--G~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~~  243 (400)
                      |+++++   |||  |.+++.+.   |++++ .+.++|++.||++.- .++-....+-.+.  . ....+++.|.-|..  
T Consensus       168 k~~vit---npTYdGv~~n~~~---i~~~~-~~~~a~v~~deah~~-~~~~~~~l~~~~~--~-~~~~~~tqS~HK~l--  234 (557)
T COG1982         168 KLAVIT---NPTYDGVCYNLRK---IVELL-HHYGAWVLYDEAHPA-HFDFSPMLPESAL--N-GGADFVTQSTHKLL--  234 (557)
T ss_pred             HEEEEE---CCCCCEEEECHHH---HHHHH-HHCCCEEEHHHCCCC-CCCCCCCCCCHHH--H-CCCEEEEEEHHHHH--
T ss_conf             068896---4853247605999---99997-531866888645774-3355555741145--4-57438981054421--


Q ss_pred             CCCCCC-CCCCH
Q ss_conf             445444-22110
Q gi|254780602|r  244 TGLRIG-YAAGA  254 (400)
Q Consensus       244 ~G~RiG-~~v~~  254 (400)
                      +++.-+ ++...
T Consensus       235 ~alSQaS~iHv~  246 (557)
T COG1982         235 AALSQASMIHVK  246 (557)
T ss_pred             HHHHHHHHHHHC
T ss_conf             234366787508


No 295
>COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only]
Probab=99.01  E-value=2.3e-09  Score=77.11  Aligned_cols=335  Identities=16%  Similarity=0.190  Sum_probs=182.0

Q ss_pred             CCEEECCCCCCCCCCCHHHHHHHHHHHHCCC--CCCCCCCC------CHHHHH---HHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf             9726656589749889999999999983887--56998778------989999---999986421013333223323345
Q gi|254780602|r   31 IDVLCLTAGEPDFDMPENVKYAVVRAMERGE--TKYTAVAG------ISPLRE---AIVEKFRRDNDLHYTSDQIIVGTG   99 (400)
Q Consensus        31 ~~ii~l~~G~p~~~~p~~i~~a~~~al~~~~--~~Y~~~~G------~~~lR~---aia~~~~~~~g~~~~~e~I~it~G   99 (400)
                      ++.||+.-=+-.--.+++.++|+.+- .+|.  -.|+. .|      -|+.++   .+++++    |+    |.+-+|+|
T Consensus        15 r~~iNv~PiQrGGiLt~eArkal~E~-gDGYSvCD~C~-~Grldei~kPpI~~F~~dlaeFl----g~----D~~R~t~G   84 (382)
T COG1103          15 RGFINVNPIQRGGILTEEARKALLEW-GDGYSVCDFCL-EGRLDEITKPPIKDFLEDLAEFL----GM----DEVRVTAG   84 (382)
T ss_pred             CCCCCCCHHHCCCCCCHHHHHHHHHH-CCCCCHHHHHC-CCCCCCCCCCCHHHHHHHHHHHH----CC----CEEEECCC
T ss_conf             17603472340686879999999986-48863443104-57411025885888999889871----98----63442365


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCC----C--C-CCCEEEC
Q ss_conf             4333322222223322322223333-23222222222222222222222322210333100012----2--1-2201211
Q gi|254780602|r  100 AKHVIFNALMATVNMGDEVLIPRPY-WVSYPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQAIT----P--K-TKWLFLN  171 (400)
Q Consensus       100 ~~~~l~~~~~~~~~~Gd~Vlv~~P~-y~~y~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~----~--~-~k~i~l~  171 (400)
                      +.++=+.++.++|.+||-|++-.-. |..|. +++.+|.++..||-..--.|.+++|...+.|.    +  + +.+.+|+
T Consensus        85 ARe~KfavMhal~~~gd~vV~D~~aHYttyv-AAEragl~v~eVp~tg~Pey~i~~e~y~~viee~~~~~g~~~~lallT  163 (382)
T COG1103          85 AREAKFAVMHALCKEGDWVVVDSLAHYTTYV-AAERAGLNVAEVPNTGYPEYKITPEGYAEVIEEVKDEGGDPPALALLT  163 (382)
T ss_pred             CHHHHHHHHHHHCCCCCEEEECCCCHHHHHH-HHHHCCCEEEECCCCCCCCEEECHHHHHHHHHHHHHCCCCCCEEEEEE
T ss_conf             1256799999751589889974742278899-998639758966789998457668888999999986248984489996


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCC
Q ss_conf             35421000012333321112233333201110122110000012233222111233322574146544322344544422
Q gi|254780602|r  172 SPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTGLRIGYA  251 (400)
Q Consensus       172 nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~  251 (400)
                      +|.---|.   ..+-++++++| +++++.++..-+|.-    |.-+.|.....     .-+++.|-.|+++.+| -+|.+
T Consensus       164 h~Dg~YGN---l~Dakkva~ic-~e~gvPlllN~AYt~----Grmpvs~ke~g-----~DFiVgSGHKsmAAs~-PiGvl  229 (382)
T COG1103         164 HVDGEYGN---LADAKKVAKIC-REYGVPLLLNCAYTV----GRMPVSGKEIG-----ADFIVGSGHKSMAASA-PIGVL  229 (382)
T ss_pred             CCCCCCCC---CHHHHHHHHHH-HHCCCCEEEECCEEE----CCCCCCCCCCC-----CCEEEECCCCCHHCCC-CEEEE
T ss_conf             35777577---22167899999-872995685121022----32113665567-----8779724853001148-70477


Q ss_pred             CCHHHHHHHHHHHCCC-------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---CCCCCHHHHHHCCCCCEE--EE
Q ss_conf             1101226875310012-------22332222222222223467643222222110---000000245530477603--30
Q gi|254780602|r  252 AGALSLIKSMIVLQGQ-------QTSGACSIAQWAAVEALNGPQDFVVNNRKIFE---YRRDLCVAQLQGVPGIRY--MI  319 (400)
Q Consensus       252 v~~~~li~~l~~~~~~-------~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~---~~r~~~~~~L~~~~g~~~--~~  319 (400)
                      ....+..+...+....       -..+++.-. .-.+..+ ..-.++.+....+.   ++.+++.+.|+++.|+.-  .+
T Consensus       230 ~~~eE~ae~V~r~Sg~~~~~KEvellGCT~rG-apivTlm-ASfP~V~eRVkrWdeEv~kaR~fv~elEkigg~~qlG~r  307 (382)
T COG1103         230 AMSEEWAEIVLRRSGRAFPKKEVELLGCTVRG-APIVTLM-ASFPHVVERVKRWDEEVEKARWFVAELEKIGGVKQLGER  307 (382)
T ss_pred             EEHHHHHHHHHHHCCCCCCCCEEEEECCCCCC-CHHHHHH-HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             51367778998631544653325661432468-4389987-407799999987889999999999999974308871779


Q ss_pred             CCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEE-EECCCCCCCCCEEEEE-EECCHHHHHHHHHHHHHHHH
Q ss_conf             274089986264102332113322489899999999873979-9835022899728999-62999999999999999998
Q gi|254780602|r  320 PDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVA-VVQGSSFGHGPSIRIS-YAVSDAILEEACVRIKRFCH  397 (400)
Q Consensus       320 p~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~-v~pG~~Fg~~~~iRis-~~~~~e~l~~al~rl~~~l~  397 (400)
                      |.--=.++...+.+..   ...+..+...-+.+. |++.||. +.||    ...+|.+| |+.+.|+++--++.+++.++
T Consensus       308 Pk~HdLm~Fetp~f~e---Iakk~~r~gyFlY~E-LK~RgI~GI~~G----~Tk~~K~svyGl~~Eqve~V~~afkeI~e  379 (382)
T COG1103         308 PKNHDLMKFETPVFHE---IAKKHKRKGYFLYEE-LKKRGIHGIQPG----QTKYFKLSVYGLSWEQVEYVVDAFKEIAE  379 (382)
T ss_pred             CCCCCEEEECCCHHHH---HHHHCCCCCEEEHHH-HHHCCCCCCCCC----CEEEEEEEEECCCHHHHHHHHHHHHHHHH
T ss_conf             7656425533712899---987576785466898-876586650667----51378887505779999999999999998


Q ss_pred             HCC
Q ss_conf             609
Q gi|254780602|r  398 SLQ  400 (400)
Q Consensus       398 ~l~  400 (400)
                      +++
T Consensus       380 ky~  382 (382)
T COG1103         380 KYG  382 (382)
T ss_pred             HCC
T ss_conf             619


No 296
>PRK06148 hypothetical protein; Provisional
Probab=98.99  E-value=1.3e-08  Score=72.43  Aligned_cols=328  Identities=13%  Similarity=0.066  Sum_probs=166.9

Q ss_pred             CCHHHHHHHHHHHHC--CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCC-CCCCC
Q ss_conf             899999999999838--87569987789899999999864210133332233233454333322222223-322-32222
Q gi|254780602|r   45 MPENVKYAVVRAMER--GETKYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFNALMATV-NMG-DEVLI  120 (400)
Q Consensus        45 ~p~~i~~a~~~al~~--~~~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l~~~~~~~~-~~G-d~Vlv  120 (400)
                      ..|.|.+|+.+.++.  ..+.|..    +. ..++|+++.....  -.-+.|+++|++++|...+++.-- ..| ..||.
T Consensus       641 ~hP~v~~ai~~Q~~~L~t~t~y~~----~~-~~~lAerL~~~~P--~~l~~vfF~NSGSEAnE~AiKlAr~~tgr~~iI~  713 (1015)
T PRK06148        641 AHPRVVEAAARQAARLNTNTRYLH----DA-IVAYAERLTATLP--EGLTVASFVNSGSEANSLALRLARAHTGARDAIV  713 (1015)
T ss_pred             CCHHHHHHHHHHHHHHCCCCCCCC----CH-HHHHHHHHHHHCC--CCCCEEEECCCHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf             798999999999976242666568----36-9999999998477--7765576307738899999999998608997488


Q ss_pred             CCCCCCCCCCC-CCCCC--------------CCCCCCCCCCCCCCCC-H-------HHHHHCCC---C---CCCCCEEEC
Q ss_conf             33332322222-22222--------------2222222222232221-0-------33310001---2---212201211
Q gi|254780602|r  121 PRPYWVSYPDM-VALCG--------------GIPVFVDTQQDDNFQV-S-------PEKLEQAI---T---PKTKWLFLN  171 (400)
Q Consensus       121 ~~P~y~~y~~~-~~~~g--------------~~~~~v~~~~~~~~~~-d-------~~~l~~~i---~---~~~k~i~l~  171 (400)
                      ..-+|-.-... ....|              .....+|-..-+.|.. +       .+++++.+   .   +++-++++ 
T Consensus       714 ~~~aYHG~T~gals~s~~~~~~~~g~~~~~~v~~~~~P~~yr~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~Aa~I~-  792 (1015)
T PRK06148        714 LDWAYHGTTQELIDLSPYKFKRKGGKGRPDHVEEAEVPDSYRAPERWPDAEHGRRFAESVAEQIAAMRAQGRAPAFFIA-  792 (1015)
T ss_pred             EECCCCCCCHHHHHHCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEE-
T ss_conf             6035568636677636774556778899985377889976567778981678999999999999998715881589997-


Q ss_pred             CC-CCCCCCC-CCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCC--CCCCCCCCCEEEEECCCCCCCCCCCCC
Q ss_conf             35-4210000-1233332111223333320111012211000001223322--211123332257414654432234454
Q gi|254780602|r  172 SP-SNPSGVV-YSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNI--VNVEPSLYERTLVVNGVSKAYAMTGLR  247 (400)
Q Consensus       172 nP-~NPTG~v-~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~--~~~~~~~~~~~i~~~S~SK~~~~~G~R  247 (400)
                      -| ..-.|.+ .++.-++++.++| +++|+++|.||+...|.=.|..+-.+  ..+.|+     |+  +++|..+ .|+-
T Consensus       793 EpIqg~gG~~~~p~gyl~~v~~~c-~~~G~LlI~DEVQtGfGRTG~~~fa~e~~gV~PD-----Iv--t~aKglg-~G~P  863 (1015)
T PRK06148        793 ESIPSVAGQVFLPEGYLREVYAMV-RAAGGVCIADEVQVGFGRVGSHWWAFETQGVVPD-----IV--TMGKPIG-NGHP  863 (1015)
T ss_pred             CCCCCCCCCCCCCHHHHHHHHHHH-HHCCCEEEEECCCCCCCCCCCCCCEEHHCCCCCC-----EE--EECCCCC-CCCC
T ss_conf             883378884079889999999999-9839789995453387823663000031299888-----79--8656444-7867


Q ss_pred             CCCCCCHHHHHHHHHHHCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCC----CCCEEEECCC
Q ss_conf             4422110122687531001-2223322222222222234676432222221100000002455304----7760330274
Q gi|254780602|r  248 IGYAAGALSLIKSMIVLQG-QQTSGACSIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQGV----PGIRYMIPDG  322 (400)
Q Consensus       248 iG~~v~~~~li~~l~~~~~-~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~~~~~L~~~----~g~~~~~p~g  322 (400)
                      +|.+++.+++.+.+..-.. ..+++-+.++..++.+.|+--++  ++..+.-++.-+++.+.|+++    +-+.=++.. 
T Consensus       864 lgAv~~~~ei~~~f~~g~~~~sTfgGnPlacAaalavLdii~~--e~L~~na~~~G~~l~~~L~~L~~~~p~IgdVRG~-  940 (1015)
T PRK06148        864 MSAVVTTREIADSFDNGMEYFNTFGGNPVSCAIGLAVLDIIED--EDLRRNALEIGNYLLAGFRSLQQRFDIIGDVRGL-  940 (1015)
T ss_pred             CEEEEECHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECC-
T ss_conf             6788985999975426875268878699999999999999987--3799999999999999999988608968876127-


Q ss_pred             CEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCCCCEEEEE--EECCHHHHHHHHHHHHHHHHH
Q ss_conf             0899862641023321133224898999999998739799835022899728999--629999999999999999986
Q gi|254780602|r  323 AFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGHGPSIRIS--YAVSDAILEEACVRIKRFCHS  398 (400)
Q Consensus       323 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~iRis--~~~~~e~l~~al~rl~~~l~~  398 (400)
                      |+++=+++-.-.....+..   .-...++.+ +.++||++.+...  .++-+||.  ++.+.++++..++.|.+.|.+
T Consensus       941 GLm~GiElV~d~~tk~Pa~---~~~~~v~~~-~~e~GvLi~~~G~--~~nVlri~PPL~it~e~~D~~l~~Ld~vl~a 1012 (1015)
T PRK06148        941 GLFLGIELVTDRKTKAPAT---AIARKVKDG-ARERGILIGTEGP--KDNVLKMRPPMIFSRADADHLLEVLDDSFAA 1012 (1015)
T ss_pred             CCEEEEEECCCCCCCCCCH---HHHHHHHHH-HHHCCEEEECCCC--CCCEEEECCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             7089999635877789639---999999999-9978918932789--9887998089645599999999999999999


No 297
>TIGR03251 LAT_fam L-lysine 6-transaminase. Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites.
Probab=98.98  E-value=1.8e-09  Score=77.71  Aligned_cols=331  Identities=14%  Similarity=0.128  Sum_probs=147.6

Q ss_pred             CCCCEEECCCCCC----CCCCCHHHHHHHHHHHHCCC--CCCCCCCCC-HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf             6997266565897----49889999999999983887--569987789-8999999998642101333322332334543
Q gi|254780602|r   29 KGIDVLCLTAGEP----DFDMPENVKYAVVRAMERGE--TKYTAVAGI-SPLREAIVEKFRRDNDLHYTSDQIIVGTGAK  101 (400)
Q Consensus        29 ~g~~ii~l~~G~p----~~~~p~~i~~a~~~al~~~~--~~Y~~~~G~-~~lR~aia~~~~~~~g~~~~~e~I~it~G~~  101 (400)
                      .|+..+|+..|.-    .+. +|.|.+++....+...  ..++..... ......+++.+.+..+ +-.-+.+.++++++
T Consensus        36 dG~~yLD~~~g~~~~~lGh~-hp~iv~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~l~~v~f~~sGs  113 (431)
T TIGR03251        36 DGRRYLDMFSFFASMALGMN-HPALVDDLAFRARLGAAAVNKPSNSDVYTVAMARFVDTFARVLG-DPALPHLFFIEGGA  113 (431)
T ss_pred             CCCEEEECCHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCC-CCCCCEEEEECCHH
T ss_conf             99884170141998877079-79999999999999887653856622556999999999998508-87778589758679


Q ss_pred             CCCCCCCCCC----CC----------CCCCCCCCCCCCCCCCC-CCCCCCCCCC------------------CCCCCCCC
Q ss_conf             3332222222----33----------22322223333232222-2222222222------------------22222223
Q gi|254780602|r  102 HVIFNALMAT----VN----------MGDEVLIPRPYWVSYPD-MVALCGGIPV------------------FVDTQQDD  148 (400)
Q Consensus       102 ~~l~~~~~~~----~~----------~Gd~Vlv~~P~y~~y~~-~~~~~g~~~~------------------~v~~~~~~  148 (400)
                      +|...++...    ..          .|.+|+...-+|-.-.. .....|..+.                  ..+.+..+
T Consensus       114 EAvE~AiKlA~~y~~r~~~~~~~~~~~~~kiis~~~syHG~T~gals~t~~~~~~~~~~p~~~~~~~~~p~~~~~~~~~~  193 (431)
T TIGR03251       114 LAVENALKTAFDWKSRHNQARGIPAALGTQVLHLRQAFHGRSGYTLSLTNTDPRKTARFPKFDWPRIDNPKLTFPLDAPN  193 (431)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             99999999999997643123455777764799972536599633334436875335778877877777988768888765


Q ss_pred             C----C--CCHHHHHHCCCCC---CCCCEEECCC-CCCCCC-CCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCC
Q ss_conf             2----2--2103331000122---1220121135-421000-01233332111223333320111012211000001223
Q gi|254780602|r  149 N----F--QVSPEKLEQAITP---KTKWLFLNSP-SNPSGV-VYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQF  217 (400)
Q Consensus       149 ~----~--~~d~~~l~~~i~~---~~k~i~l~nP-~NPTG~-v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~  217 (400)
                      .    +  .-+++.++..+.+   ++-++++ -| +--.|. +.+++-++++-++| ++||+++|.||+...|.=.|.-+
T Consensus       194 ~~~~~~~~~~~l~~~~~~~~~~~~~iAAvI~-EPIqG~gG~~~~p~~yl~~lr~lc-~~~giLLI~DEVqtGfGRtG~~f  271 (431)
T TIGR03251       194 LDQVIALEEEALRQARAAFAERPHDIACFIA-EPIQGEGGDNHFRPEFLRAMRALC-DEHDALLIFDEVQTGVGLTGTAW  271 (431)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHCCCCEEEEEE-CCCCCCCCCCCCCHHHHHHHHHHH-HHCCCEEECCCCEECCCCCCCCH
T ss_conf             0025556899999999999738995799996-777677798568989999999998-76275055341013677667744


Q ss_pred             CC-CCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHH---HHHHHHH--CCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             32-22111233322574146544322344544422110122---6875310--012223322222222222234676432
Q gi|254780602|r  218 SN-IVNVEPSLYERTLVVNGVSKAYAMTGLRIGYAAGALSL---IKSMIVL--QGQQTSGACSIAQWAAVEALNGPQDFV  291 (400)
Q Consensus       218 ~s-~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~v~~~~l---i~~l~~~--~~~~~~~~~~~~q~a~~~~l~~~~~~~  291 (400)
                      .+ -..+.|+     |+  +++|..+.     |.+.+...+   .......  ....+.+.+.+...++.+.|+--++  
T Consensus       272 a~e~~gv~PD-----iv--~~gKgl~~-----g~~~~~~~~~~~~~~~~~~~~~~~sT~~gnpla~aaala~l~ii~~--  337 (431)
T TIGR03251       272 AYQQLGVQPD-----IV--AFGKKTQV-----CGIMAGRRVDEVADNVFAVPSRLNSTWGGNLVDMVRATRILEIIEE--  337 (431)
T ss_pred             HHHHCCCCCC-----EE--EECCCCCC-----CHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHH--
T ss_conf             6775078899-----89--87772235-----5188899999999986417877678888898999999988999862--


Q ss_pred             CCCCCCCCCCCCCHHHHHHCC----CC-CEEEECCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCC
Q ss_conf             222221100000002455304----77-6033027408998626410233211332248989999999987397998350
Q gi|254780602|r  292 VNNRKIFEYRRDLCVAQLQGV----PG-IRYMIPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGS  366 (400)
Q Consensus       292 ~~~~~~~~~~r~~~~~~L~~~----~g-~~~~~p~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~  366 (400)
                      +...+..+++-+++.+.|+++    |. +.=++.. |+++=+++++.           ....+++.+++ +.|+++.|..
T Consensus       338 e~l~~~v~~~g~~l~~~L~~l~~~~p~~V~dVRG~-GLm~giel~~~-----------~~~~~~~~~~~-~~Gll~~~~g  404 (431)
T TIGR03251       338 ERLVDNARVQGAHLLARLHELAAEFPHLVSNPRGR-GLMCAFDLPST-----------ADRDEVIRQLY-REGVLLLGCG  404 (431)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEC-CEEEEEECCCH-----------HHHHHHHHHHH-HCCCEEEECC
T ss_conf             46999999999999999999987687824563013-36999981881-----------67999999999-7893997479


Q ss_pred             CCCCCCEEEEE--EECCHHHHHHHHHHHHH
Q ss_conf             22899728999--62999999999999999
Q gi|254780602|r  367 SFGHGPSIRIS--YAVSDAILEEACVRIKR  394 (400)
Q Consensus       367 ~Fg~~~~iRis--~~~~~e~l~~al~rl~~  394 (400)
                          ++.||+.  +..+++++++++++|++
T Consensus       405 ----~~~ir~~PPL~it~~eid~~~~~l~~  430 (431)
T TIGR03251       405 ----ERSIRFRPPLTVTREEIDAAIDAIRR  430 (431)
T ss_pred             ----CCEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf             ----99899988930889999999999726


No 298
>PRK02769 histidine decarboxylase; Provisional
Probab=98.98  E-value=1.5e-09  Score=78.22  Aligned_cols=285  Identities=11%  Similarity=0.115  Sum_probs=160.5

Q ss_pred             CHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             9899999999864210133332233233454333322222223--32232222333323222222222222222222222
Q gi|254780602|r   70 ISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFNALMATV--NMGDEVLIPRPYWVSYPDMVALCGGIPVFVDTQQD  147 (400)
Q Consensus        70 ~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l~~~~~~~~--~~Gd~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~~  147 (400)
                      ..++-.+|.+|+.+.++.+.+.-.=.+|+|++++...++.+-=  -|...+.+++-+-.....++.++|...+.+|+++.
T Consensus        63 s~~~E~eVl~~~a~L~~~~~~~~wGyvTsGGTE~Nl~al~~ARe~~p~~vl~~Se~aHYSi~Kaa~llgi~~~~V~~~~~  142 (380)
T PRK02769         63 SFDFERDVMNFFAELFKIPFNESWGYITNGGTEGNLYGCYLARELFPDGTLYYSKDTHYSVSKIARLLRIKSRVITSLPN  142 (380)
T ss_pred             CHHHHHHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHCCCCCEEECCCCC
T ss_conf             08999999999999858995458779906554999999999998679968996673227799999983998707367999


Q ss_pred             CCCCCHHHHHHCCCCCC---CCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC---EEECCCCCCCCCCCCCCCCCCC
Q ss_conf             32221033310001221---22012113542100001233332111223333320---1110122110000012233222
Q gi|254780602|r  148 DNFQVSPEKLEQAITPK---TKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHV---HIISDDIYEHIVYRNCQFSNIV  221 (400)
Q Consensus       148 ~~~~~d~~~l~~~i~~~---~k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i---~ii~De~Y~~l~~~~~~~~s~~  221 (400)
                      +  .+|+++|++++...   +-+|+.+-....+|.+   +.+.+|.++|.+ +++   |+-+|.+++.+...-.++.+..
T Consensus       143 G--~md~~~L~~~i~~~~~~P~iv~at~GTT~~Gai---D~i~~i~~i~~~-~g~~~~wlHvDaA~gG~~lpf~~~~~~~  216 (380)
T PRK02769        143 G--EIDYDDLISKIKENKNQPPIIFANIGTTMTGAI---DNIKEIQEILKK-IGIDDYYIHADAALSGMILPFVNNPPPF  216 (380)
T ss_pred             C--CCCHHHHHHHHHHCCCCCEEEEEECCCCCCCCC---CCHHHHHHHHHH-CCCCCEEEEEECCCCCEEEECCCCCCCC
T ss_conf             9--497999999999679987799996479888671---899999999998-2998427984120233243326775457


Q ss_pred             CCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCC-----CC-----CCCCCCCCCCCCCCCCC
Q ss_conf             111233322574146544322344544422110122687531001222332-----22-----22222222234676432
Q gi|254780602|r  222 NVEPSLYERTLVVNGVSKAYAMTGLRIGYAAGALSLIKSMIVLQGQQTSGA-----CS-----IAQWAAVEALNGPQDFV  291 (400)
Q Consensus       222 ~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~v~~~~li~~l~~~~~~~~~~~-----~~-----~~q~a~~~~l~~~~~~~  291 (400)
                      ...+.  -..|++ +..|..++| +-+|.++..++.++.+..-..+....-     +.     ...+++...+  +.+-+
T Consensus       217 ~~~~~--~dSis~-d~HK~~~~p-~~~gv~l~r~~~~~~~~~~~~Yi~s~d~TI~GSR~G~~~~~~W~~l~~l--G~~Gy  290 (380)
T PRK02769        217 SFADG--IDSIAI-SGHKFIGSP-MPCGIVLAKKKYVERISVDVDYIGSRDQTISGSRNGHTALLLWAAIRSL--GSKGL  290 (380)
T ss_pred             CCCCC--CCEEEE-CCCCCCCCC-CCEEEEEEEHHHHHHCCCCCCCCCCCCCCEECCCCCHHHHHHHHHHHHH--CHHHH
T ss_conf             89888--897998-773457887-7559999872565411436870378982244257667899999999987--89889


Q ss_pred             CCCCCCCCCCCCCHHHHHHCCCCCEE-EECCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCC
Q ss_conf             22222110000000245530477603-30274089986264102332113322489899999999873979983502289
Q gi|254780602|r  292 VNNRKIFEYRRDLCVAQLQGVPGIRY-MIPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGH  370 (400)
Q Consensus       292 ~~~~~~~~~~r~~~~~~L~~~~g~~~-~~p~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~  370 (400)
                      ++..+...++.+++.+.|++. |+.+ ..|...--+|. .+               ++++    .++..+.+..      
T Consensus       291 ~~~v~~~~~~A~yl~~~L~~~-Gi~~~~~P~s~~Vvf~-~p---------------~e~i----~~kw~Ls~~~------  343 (380)
T PRK02769        291 RQRVQHCLDMAQYAVDRLQAN-GIPAWRNPNSITVVFP-CP---------------SERI----WKKWHLATSG------  343 (380)
T ss_pred             HHHHHHHHHHHHHHHHHHHHC-CCCEEECCCCEEEEEC-CC---------------CHHH----HHCEEEECCC------
T ss_conf             999999999999999999872-9874707885379962-89---------------9888----5074672159------


Q ss_pred             CCEEEEEEE--CCHHHHHHHHHHHHH
Q ss_conf             972899962--999999999999999
Q gi|254780602|r  371 GPSIRISYA--VSDAILEEACVRIKR  394 (400)
Q Consensus       371 ~~~iRis~~--~~~e~l~~al~rl~~  394 (400)
                       +..|+.+-  .+.|.+++-++-|..
T Consensus       344 -~~~HiVvMPhVt~e~iD~fl~DL~~  368 (380)
T PRK02769        344 -NQAHIITMPHHNKQQIDSLIDELIF  368 (380)
T ss_pred             -CEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf             -8269998999999999999999999


No 299
>pfam00202 Aminotran_3 Aminotransferase class-III.
Probab=98.96  E-value=1.4e-09  Score=78.35  Aligned_cols=269  Identities=14%  Similarity=0.128  Sum_probs=140.6

Q ss_pred             CCCCEEECCCCC--CCCC-CCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             699726656589--7498-8999999999998388756998778989999999986421013333223323345433332
Q gi|254780602|r   29 KGIDVLCLTAGE--PDFD-MPENVKYAVVRAMERGETKYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIF  105 (400)
Q Consensus        29 ~g~~ii~l~~G~--p~~~-~p~~i~~a~~~al~~~~~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l~  105 (400)
                      .|+..||+..|.  ..+. -+|.|.+|+++.+++..+...... ..+.+..+|+.+.+..+.  +-+.|.+++++++|..
T Consensus        14 dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~~~~~~~~~~-~~~~~~~lae~l~~~~p~--~~~~v~f~~sGseA~e   90 (338)
T pfam00202        14 DGRRYLDFLSGIAVVNLGHCHPKIVQAVKEQADKLTHTSFRAF-TTEPALQLAEKLAQLTPG--GLDRVFFMNSGSEANE   90 (338)
T ss_pred             CCCEEEECCCCHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCC-CCHHHHHHHHHHHHHCCC--CCCEEEEECCHHHHHH
T ss_conf             9699999661988634169959999999999953898566755-888999999999985788--8687998287689999


Q ss_pred             CCCCCCC-------CCC-CCCCCCCCCCCCCCCC-CCCCCCC------------CCCCCCC--CC-CCCCCHHHHHHCCC
Q ss_conf             2222223-------322-3222233332322222-2222222------------2222222--22-32221033310001
Q gi|254780602|r  106 NALMATV-------NMG-DEVLIPRPYWVSYPDM-VALCGGI------------PVFVDTQ--QD-DNFQVSPEKLEQAI  161 (400)
Q Consensus       106 ~~~~~~~-------~~G-d~Vlv~~P~y~~y~~~-~~~~g~~------------~~~v~~~--~~-~~~~~d~~~l~~~i  161 (400)
                      .+++.--       .+| ..|+..+-+|-..... ....+..            ...+|..  +. .......+++.+.+
T Consensus        91 ~AiklAr~~~~~~g~t~r~~il~~~~~yHG~t~~~~s~s~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  170 (338)
T pfam00202        91 TAIKLARQYAKKKGATGKTKIIAFSGGFHGRTLGALSVTGSSGYKKGFGPSLPGVYFLPYPDLEAAEEELACADEALRLI  170 (338)
T ss_pred             HHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCEEEEECCCCCCCCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             99999999777537899887999938825887305881588555556778999945748997354200156689999999


Q ss_pred             ----CCCCCCEEECCCC-CCCCC-CCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC-CCCCCCCCCCCEEEEE
Q ss_conf             ----2212201211354-21000-012333321112233333201110122110000012233-2221112333225741
Q gi|254780602|r  162 ----TPKTKWLFLNSPS-NPSGV-VYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFS-NIVNVEPSLYERTLVV  234 (400)
Q Consensus       162 ----~~~~k~i~l~nP~-NPTG~-v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~-s~~~~~~~~~~~~i~~  234 (400)
                          .++.-++++ -|= --.|. ..+++.+++|-++| +++++++|.||+...|.-.|.-+. ....+.|+     +++
T Consensus       171 ~~~~~~~iaavii-EPi~g~~G~~~~~~~yl~~lr~lc-~~~gillI~DEV~tGfgRtG~~~~~~~~gv~PD-----iv~  243 (338)
T pfam00202       171 KAVHDDNIAAVIV-EPIQGEGGVVPPPPGFLAGLREIC-KKHGVLLIADEVQTGFGRTGKLFACEHYGVTPD-----IMT  243 (338)
T ss_pred             HHHCCCCEEEEEE-ECCCCCCCCCCCCHHHHHHHHHHH-HHCCCCEECCCCEECCCCCCCCCHHHHCCCCCE-----EEE
T ss_conf             9858997799999-887788997679879999999997-432775764531008775348740232498875-----999


Q ss_pred             CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCC
Q ss_conf             465443223445444221101226875310012223322222222222234676432222221100000002455304
Q gi|254780602|r  235 NGVSKAYAMTGLRIGYAAGALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQGV  312 (400)
Q Consensus       235 ~S~SK~~~~~G~RiG~~v~~~~li~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~~~~~L~~~  312 (400)
                        ++|..+ .|+-+|.+++.+++.+.+.......+.+.+.+...++.+.|+.-++  ++..+..+++-+++.+.|+++
T Consensus       244 --~gK~l~-~G~P~sav~~~~~i~~~~~~~~~~~T~~g~p~~~aaa~a~L~~l~~--~~l~~~~~~~g~~l~~~L~~l  316 (338)
T pfam00202       244 --LAKALT-GGLPLSAVLATAEIMQAFHPGSHGGTFGGNPLACAAALAVLDIIED--ENLLQNAQEKGDYLRKGLLAL  316 (338)
T ss_pred             --ECCCCC-CCCCCCCCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHHHH
T ss_conf             --564245-8998753116477997177999587776649999999999999965--589999999999999999985


No 300
>KOG2862 consensus
Probab=98.95  E-value=4.9e-09  Score=75.10  Aligned_cols=321  Identities=15%  Similarity=0.153  Sum_probs=170.1

Q ss_pred             HHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CC-CCC
Q ss_conf             9999983887569987789899999999864210133332233233454333322222223322322223333-23-222
Q gi|254780602|r   52 AVVRAMERGETKYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFNALMATVNMGDEVLIPRPY-WV-SYP  129 (400)
Q Consensus        52 a~~~al~~~~~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l~~~~~~~~~~Gd~Vlv~~P~-y~-~y~  129 (400)
                      ++.+|++....+|..+. .+.+-+.+-+-.+.-|... ++.-.++...+..|+..++-.++.|||.|++..-+ |. -+.
T Consensus        31 ~V~~A~~~~~lgh~sPe-~~qIm~~v~egikyVFkT~-n~~tf~isgsGh~g~E~al~N~lePgd~vLv~~~G~wg~ra~  108 (385)
T KOG2862          31 RVQEAMSRPSLGHMSPE-FVQIMDEVLEGIKYVFKTA-NAQTFVISGSGHSGWEAALVNLLEPGDNVLVVSTGTWGQRAA  108 (385)
T ss_pred             HHHHHHCCCCCCCCCHH-HHHHHHHHHHHHHHHHCCC-CCCEEEEECCCCCHHHHHHHHHCCCCCEEEEEEECHHHHHHH
T ss_conf             89985067765667878-9999999998789984047-896289836984168998875257897499997233777889


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCC-CCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCC
Q ss_conf             222222222222222222322210333100012-2122012113542100001233332111223333320111012211
Q gi|254780602|r  130 DMVALCGGIPVFVDTQQDDNFQVSPEKLEQAIT-PKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYE  208 (400)
Q Consensus       130 ~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~-~~~k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~  208 (400)
                      .+.+..|+++..++.+...  ...++++.+++. .+++++++++-.--||..-+  -+..+-++| ++|+.++++|.+-+
T Consensus       109 D~~~r~ga~V~~v~~~~G~--~~~le~i~~~lsqh~p~~vfv~hgdsSTgV~q~--~~~~~g~lc-~k~~~lllVD~VaS  183 (385)
T KOG2862         109 DCARRYGAEVDVVEADIGQ--AVPLEEITEKLSQHKPKAVFVTHGDSSTGVLQD--LLAISGELC-HKHEALLLVDTVAS  183 (385)
T ss_pred             HHHHHHCCEEEEEECCCCC--CCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCH--HHHHHHHHH-HCCCEEEEEECHHH
T ss_conf             9998608655587158556--754999999987158745999834764111155--788887874-06781899720221


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCC-CCCCCCCCCHHHHHHHHHHHCCCC------------CCCC---
Q ss_conf             000001223322211123332257414654432234-454442211012268753100122------------2332---
Q gi|254780602|r  209 HIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMT-GLRIGYAAGALSLIKSMIVLQGQQ------------TSGA---  272 (400)
Q Consensus       209 ~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~~~-G~RiG~~v~~~~li~~l~~~~~~~------------~~~~---  272 (400)
                       +  .+.+|   .  .+++ ..-+...+--|.++.| |+  +-+..++...++++..++-.            ..+.   
T Consensus       184 -l--ggt~F---~--mDew-gVDvaytgSQKaL~aP~GL--siisfS~ka~~~~~~rK~~~~~~yFd~~~~~~~wgc~~e  252 (385)
T KOG2862         184 -L--GGTEF---E--MDEW-GVDVAYTGSQKALGAPAGL--SIISFSDKALEAIRDRKTKPVSFYFDILRLGNFWGCDGE  252 (385)
T ss_pred             -C--CCCCC---E--EHHH-CCCEEEECCHHHCCCCCCC--CEEECCHHHHHHHHHCCCCCEEEEEEHHHHCCHHCCCCC
T ss_conf             -4--78641---1--2110-6507884243430799985--603238889999861457754899867761032055886


Q ss_pred             ------CCCCCC--CCCCCCCC-CCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEECCCCEEEEEECCCCCCCCCCCCCC
Q ss_conf             ------222222--22222346-764322222211000000024553047760330274089986264102332113322
Q gi|254780602|r  273 ------CSIAQW--AAVEALNG-PQDFVVNNRKIFEYRRDLCVAQLQGVPGIRYMIPDGAFYLYPSCQDLIGKKSPSGDV  343 (400)
Q Consensus       273 ------~~~~q~--a~~~~l~~-~~~~~~~~~~~~~~~r~~~~~~L~~~~g~~~~~p~g~~y~~~~~~~~~~~~~~~~~~  343 (400)
                            ..+.|.  ..-++|.. .++-+++..++-++..+.+...|+++ |++...-+--    +..+....-..+   .
T Consensus       253 ~~~yhhT~pv~lly~Lr~AL~~I~eeGL~~~~~rH~e~s~~l~~~l~~~-GLq~fv~~e~----~rlptvttv~vp---~  324 (385)
T KOG2862         253 PRAYHHTPPVQLLYSLRAALALIAEEGLENSWRRHREMSKWLKLSLEAL-GLQLFVVDEE----LRLPTVTTVKVP---Y  324 (385)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCEECCHH----HCCCCCEEEECC---C
T ss_conf             3511168848999999999999999878999999999999999999984-8610213764----526750256547---7


Q ss_pred             CCCHHHHHHHHHHHCCEEEECCCCCCCCCEEEEEE-E--CCHHHHHHHHHHHHHHHHH
Q ss_conf             48989999999987397998350228997289996-2--9999999999999999986
Q gi|254780602|r  344 IRTDLDFVNGLLEIEKVAVVQGSSFGHGPSIRISY-A--VSDAILEEACVRIKRFCHS  398 (400)
Q Consensus       344 ~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~iRis~-~--~~~e~l~~al~rl~~~l~~  398 (400)
                      ..|-.+.+.++...++|.+.-|..=-.+..+||.+ +  ...+.++.-++-|+..+++
T Consensus       325 gvDw~dVv~~~~~~~~vei~gglg~~~gKv~RIGl~gcna~~e~i~~v~~ll~~alq~  382 (385)
T KOG2862         325 GVDWKDVVAYAMSHYVVEIGGGLGPTVGKVFRIGLLGCNANVEYIDNVVELLKLALQR  382 (385)
T ss_pred             CCCHHHHHHHHHHHCCEEECCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHH
T ss_conf             7887999999987167786146677756289998751157728999999999999864


No 301
>KOG1359 consensus
Probab=98.91  E-value=2.2e-08  Score=71.09  Aligned_cols=320  Identities=15%  Similarity=0.156  Sum_probs=159.2

Q ss_pred             CEEECCCCC-CCCCCCHHHHHHHHHHHHC---CCCCCCCCCC----CHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf             726656589-7498899999999999838---8756998778----9899999999864210133332233233454333
Q gi|254780602|r   32 DVLCLTAGE-PDFDMPENVKYAVVRAMER---GETKYTAVAG----ISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHV  103 (400)
Q Consensus        32 ~ii~l~~G~-p~~~~p~~i~~a~~~al~~---~~~~Y~~~~G----~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~  103 (400)
                      +|++|...+ -.+...|+|.+|-.+++++   |..+-.-..|    +..|-+.||++-++        |+-++-+.+-.+
T Consensus        68 ~ilnFcaNnYLGLsshPeii~a~~~aleeyGaGlssvrfIcGtq~iHk~LE~kiAqfh~r--------ED~ilypscfdA  139 (417)
T KOG1359          68 KILNFCANNYLGLSSHPEIINAGQKALEEYGAGLSSVRFICGTQDIHKLLESKIAQFHGR--------EDTILYPSCFDA  139 (417)
T ss_pred             CEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHCC--------CCEEEECCCCCC
T ss_conf             504422454334457838889899999982878643168844557999999999987087--------754873310034


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCC--CCCCEEECCCC--CCCCC
Q ss_conf             322222223322322223333232222222222222222222223222103331000122--12201211354--21000
Q gi|254780602|r  104 IFNALMATVNMGDEVLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQAITP--KTKWLFLNSPS--NPSGV  179 (400)
Q Consensus       104 l~~~~~~~~~~Gd~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~--~~k~i~l~nP~--NPTG~  179 (400)
                      ..-++-++.+|.|.|+--+   .++.+++  -|.+     +-+ ..-..|.-+++....+  +.|.-++.+-.  .=.|.
T Consensus       140 Nag~feail~pedAvfSDe---LNhASII--dGir-----Lck-ry~h~dv~~l~~~l~~a~k~r~klv~TDg~FSMDGd  208 (417)
T KOG1359         140 NAGAFEAILTPEDAVFSDE---LNHASII--DGIR-----LCK-RYRHVDVFDLEHCLISACKMRLKLVVTDGVFSMDGD  208 (417)
T ss_pred             CHHHHHHHCCHHHHHHCCC---CCCCHHH--HHHH-----HHH-HHCCCHHHHHHHHHHHHHHHEEEEEEECCEECCCCC
T ss_conf             4377877448254121000---0220343--2467-----776-644512677888777743321799985461214787


Q ss_pred             CCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf             01233332111223333320111012211000001223322211123332257414654432234454442211012268
Q gi|254780602|r  180 VYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTGLRIGYAAGALSLIK  259 (400)
Q Consensus       180 v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~v~~~~li~  259 (400)
                      +-   -+++|+++ +++++.+++.||+|....|+. ..........-+.+..|..++++|..+  |---||..+|++++.
T Consensus       209 ia---Pl~ei~~L-a~kYgaLlfiDecHaTgf~G~-tGrGt~E~~~vm~~vdiinsTLgKAlG--ga~GGyttgp~~li~  281 (417)
T KOG1359         209 IA---PLEEISQL-AKKYGALLFIDECHATGFFGE-TGRGTAEEFGVMGDVDIINSTLGKALG--GASGGYTTGPKPLIS  281 (417)
T ss_pred             CC---CHHHHHHH-HHHCCCEEEEEECCCCEEECC-CCCCHHHHHCCCCCCEEHHHHHHHHHC--CCCCCCCCCCHHHHH
T ss_conf             33---38999999-986293799860431056557-888738873777764020424566624--777887468756899


Q ss_pred             HHHHH-CCCCCCCCCCCCCC-CCCCCCC---CCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEECCCCEEEEEECCCCC
Q ss_conf             75310-01222332222222-2222234---6764322222211000000024553047760330274089986264102
Q gi|254780602|r  260 SMIVL-QGQQTSGACSIAQW-AAVEALN---GPQDFVVNNRKIFEYRRDLCVAQLQGVPGIRYMIPDGAFYLYPSCQDLI  334 (400)
Q Consensus       260 ~l~~~-~~~~~~~~~~~~q~-a~~~~l~---~~~~~~~~~~~~~~~~r~~~~~~L~~~~g~~~~~p~g~~y~~~~~~~~~  334 (400)
                      -+... +.+..++.-+|.-. .+.++++   .....+..    .+.+-+.+.+.++. .|+++.-..     .+-++-..
T Consensus       282 llrqr~RpylFSnslppavV~~a~ka~dllm~s~~~i~~----~~a~~qrfr~~me~-aGftIsg~~-----hPI~pv~l  351 (417)
T KOG1359         282 LLRQRSRPYLFSNSLPPAVVGMAAKAYDLLMVSSKEIQS----RQANTQRFREFMEA-AGFTISGAS-----HPICPVML  351 (417)
T ss_pred             HHHHCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH-CCCEECCCC-----CCCCCEEC
T ss_conf             998528861421789805541569999999864799998----98899999998875-282431788-----87423231


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCC--CCC--EEEEEEE--CCHHHHHHHHHHHHHHH
Q ss_conf             33211332248989999999987397998350228--997--2899962--99999999999999999
Q gi|254780602|r  335 GKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFG--HGP--SIRISYA--VSDAILEEACVRIKRFC  396 (400)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg--~~~--~iRis~~--~~~e~l~~al~rl~~~l  396 (400)
                      +      + -+....++++||+. |+.|.. ..|-  ++|  -+|+.++  .++|+++..++.+....
T Consensus       352 G------d-a~lA~~~ad~lLk~-Gi~Vig-fs~PvVP~gkariRVqiSAaHt~edid~~i~Af~~vg  410 (417)
T KOG1359         352 G------D-ARLASKMADELLKR-GIYVIG-FSYPVVPKGKARIRVQISAAHTEEDIDRLIEAFSEVG  410 (417)
T ss_pred             C------C-HHHHHHHHHHHHHC-CCEEEE-ECCCCCCCCCEEEEEEEEHHCCHHHHHHHHHHHHHHH
T ss_conf             6------3-88888889999855-716986-2587678884479999701047888999999999988


No 302
>KOG1357 consensus
Probab=98.90  E-value=2.1e-08  Score=71.29  Aligned_cols=316  Identities=17%  Similarity=0.163  Sum_probs=158.3

Q ss_pred             EEECCC------CCCCCCCCHHHHHHHHHHHHCCCCCCCCC---CCC----HHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf             266565------89749889999999999983887569987---789----89999999986421013333223323345
Q gi|254780602|r   33 VLCLTA------GEPDFDMPENVKYAVVRAMERGETKYTAV---AGI----SPLREAIVEKFRRDNDLHYTSDQIIVGTG   99 (400)
Q Consensus        33 ii~l~~------G~p~~~~p~~i~~a~~~al~~~~~~Y~~~---~G~----~~lR~aia~~~~~~~g~~~~~e~I~it~G   99 (400)
                      ++||+.      +....+..+.+.+++.+.    .+.++.+   .|.    .++-+.+|+++    |.   ++-+++.-|
T Consensus       138 ~lNlgSYNYLGFa~~~g~ca~~~~~~~~ky----gl~~css~~e~G~~~~hkelE~l~A~f~----g~---e~a~vF~mG  206 (519)
T KOG1357         138 CLNLGSYNYLGFAQSVGPCAEASLKSFDKY----GLSRCSSRHEAGTTEEHKELEELVARFL----GV---EDAIVFSMG  206 (519)
T ss_pred             EEEECCCCCCCCCCCCCCCCHHHHHHHHHH----CCCCCCCCHHCCCHHHHHHHHHHHHHHC----CC---CCEEEEECC
T ss_conf             542033223342346887761899999984----6333664200363788878999999866----88---644897415


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCC-------CCC----CCE
Q ss_conf             433332222222332232222333323222222222222222222222322210333100012-------212----201
Q gi|254780602|r  100 AKHVIFNALMATVNMGDEVLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQAIT-------PKT----KWL  168 (400)
Q Consensus       100 ~~~~l~~~~~~~~~~Gd~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~-------~~~----k~i  168 (400)
                       -..-...+.+++.||.-|+--.-.-.....-+++.|+.++-+.   .|    |+++|++.+.       |+|    |-+
T Consensus       207 -f~TNs~~~p~l~~~gsLIiSDelNHaSi~~GaRLSgAtiRVfk---HN----dm~~LEr~Lrd~I~~gqP~Thrp~kki  278 (519)
T KOG1357         207 -FATNSMNIPSLLGKGSLIISDELNHASLITGARLSGATTRVFR---HN----DMQGLERLLRDAIVYGQPKTHRPWKKI  278 (519)
T ss_pred             -CCCCCCCCCEEECCCCCEEEHHCCCHHEEECCCCCCCEEEEEE---CC----CHHHHHHHHHHHHHCCCCCCCCCCHHE
T ss_conf             -4345567622445886164400033002303031585479986---38----877799999988752787768850220


Q ss_pred             EECCCCCCCCCCCCCC----CCCCCCCCCCCCCCCEEECCCCCCCCCC--CCCCCCCCCCCCCCCCCEEEEECCCCCCCC
Q ss_conf             2113542100001233----3321112233333201110122110000--012233222111233322574146544322
Q gi|254780602|r  169 FLNSPSNPSGVVYSQN----RLRALADVLVRNPHVHIISDDIYEHIVY--RNCQFSNIVNVEPSLYERTLVVNGVSKAYA  242 (400)
Q Consensus       169 ~l~nP~NPTG~v~s~~----~l~~i~~~~a~~~~i~ii~De~Y~~l~~--~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~  242 (400)
                      ++|     -+-++|-|    .+.+++.. .|++..+++.||+|+-=.-  .|.-..-+...++  .|..|.+++|.|+|+
T Consensus       279 ~ii-----vegiysmEg~iv~Lp~vval-kkkykayl~lDEAHSiGA~g~tGrgvce~~g~d~--~dvDImMGtftKSfg  350 (519)
T KOG1357         279 LIC-----VEGIYSMEGTIVDLPEVVAL-KKKYKAYLYLDEAHSIGAMGATGRGVCEYFGVDP--EDVDIMMGTFTKSFG  350 (519)
T ss_pred             EEE-----ECCCCCCCCEECCCHHHHHH-HCCCCEEEEEECCCCCCCCCCCCCCEEECCCCCC--HHHEEECCEEHHHCC
T ss_conf             342-----01101056721161998875-2043379984010002553788874223468882--462022010021045


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHCC---CCCCCCCCCCCCCCC--CCCCC--CCCCCCCCCCCCCCCCCCHHHHHHCCCCC
Q ss_conf             344544422110122687531001---222332222222222--22346--76432222221100000002455304776
Q gi|254780602|r  243 MTGLRIGYAAGALSLIKSMIVLQG---QQTSGACSIAQWAAV--EALNG--PQDFVVNNRKIFEYRRDLCVAQLQGVPGI  315 (400)
Q Consensus       243 ~~G~RiG~~v~~~~li~~l~~~~~---~~~~~~~~~~q~a~~--~~l~~--~~~~~~~~~~~~~~~r~~~~~~L~~~~g~  315 (400)
                      ..|   ||+.+++++++.+.....   +.++.++.+.|....  ..+.+  +-+.-++..+++.++..++...|++. |+
T Consensus       351 a~G---Gyiagsk~lid~lrt~s~~~~yat~~sppvaqq~~ssl~~i~G~dgt~~g~~k~~~l~~ns~yfr~~l~~~-gf  426 (519)
T KOG1357         351 AAG---GYIAGSKELIDYLRTPSPSALYATSLSPPVAQQILTSVKHIMGEDGTNRGRQKIERLAENSRYFRWELQKM-GF  426 (519)
T ss_pred             CCC---CEECCCHHHHHHCCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC-CE
T ss_conf             666---60028388774100478842420367828899999878752488764077999999875028998751048-28


Q ss_pred             EEEECCCCE--EEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCCC----CEEEEEEE--CCHHHHHH
Q ss_conf             033027408--99862641023321133224898999999998739799835022899----72899962--99999999
Q gi|254780602|r  316 RYMIPDGAF--YLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGHG----PSIRISYA--VSDAILEE  387 (400)
Q Consensus       316 ~~~~p~g~~--y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~----~~iRis~~--~~~e~l~~  387 (400)
                      .+.--+-+-  -+.+..             ...-..|.+.|+++ ++.++- -+|-..    .-+|++.+  ...|.+..
T Consensus       427 ivyG~~dSpVvplll~~-------------~~k~~~f~r~~l~~-nigvVv-vgfPatpl~e~r~R~c~Sa~ht~e~ld~  491 (519)
T KOG1357         427 IVYGNNDSPVVPLLLYG-------------PAKIVAFSREMLER-NIGVVV-VGFPATPLLESRARFCLSASHTKEDLDR  491 (519)
T ss_pred             EEECCCCCCCCEEEECC-------------CCCCCHHHHHHHHC-CCEEEE-EECCCCHHHHHHHHHHHCCCCCHHHHHH
T ss_conf             99167888764366327-------------53140789999864-735999-7279945777677865423555788999


Q ss_pred             HHHHHHH
Q ss_conf             9999999
Q gi|254780602|r  388 ACVRIKR  394 (400)
Q Consensus       388 al~rl~~  394 (400)
                      +++.+.+
T Consensus       492 ~l~~i~~  498 (519)
T KOG1357         492 ALEVIDR  498 (519)
T ss_pred             HHHHHHH
T ss_conf             9998866


No 303
>PRK04311 selenocysteine synthase; Provisional
Probab=98.89  E-value=1.8e-08  Score=71.72  Aligned_cols=332  Identities=16%  Similarity=0.116  Sum_probs=177.4

Q ss_pred             CCCHHHHHHHHHHHHC-CCCCCCCCCCCHHHHHH-HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             8899999999999838-87569987789899999-999864210133332233233454333322222223322322223
Q gi|254780602|r   44 DMPENVKYAVVRAMER-GETKYTAVAGISPLREA-IVEKFRRDNDLHYTSDQIIVGTGAKHVIFNALMATVNMGDEVLIP  121 (400)
Q Consensus        44 ~~p~~i~~a~~~al~~-~~~~Y~~~~G~~~lR~a-ia~~~~~~~g~~~~~e~I~it~G~~~~l~~~~~~~~~~Gd~Vlv~  121 (400)
                      |.++.+.+++.+.... ..+.|--..|-..-|.. +.+.+.+..|    .|..++.|.-..|+++++.+++ .|.+|+|.
T Consensus        99 pL~~~a~~~v~~~~~~YsnLE~dL~~G~RG~R~~~v~~ll~~ltg----aE~a~vVNNNAaAv~L~l~~la-~gkEviVS  173 (465)
T PRK04311         99 LLSEAAIEAVTEAARGYSNLEYDLATGKRGSRDRALAALLCELTG----AEDALVVNNNAAAVLLALNALA-AGKEVIVS  173 (465)
T ss_pred             CCCHHHHHHHHHHHCCCCHHHHECCCCCCCCCHHHHHHHHHHHHC----CCEEEEECCCHHHHHHHHHHHH-CCCEEEEE
T ss_conf             788999999999962872155220138898708999999998549----8737998284899999999862-79859996


Q ss_pred             C------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEECCCCCCCCCCCCC-CCCCCCCCCCC
Q ss_conf             3------3323222222222222222222222322210333100012212201211354210000123-33321112233
Q gi|254780602|r  122 R------PYWVSYPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQ-NRLRALADVLV  194 (400)
Q Consensus       122 ~------P~y~~y~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~k~i~l~nP~NPTG~v~s~-~~l~~i~~~~a  194 (400)
                      .      .+-+-.+.+.+..|++.+.|-+...    --+.+.+++|+++|.+++-++++|=--.=++. -.+++|+++ +
T Consensus       174 RGelvEIGGsFRiPdim~~sGa~L~EVGtTNr----T~l~DY~~AI~~~Ta~llkvH~SN~~i~GFt~~v~~~eL~~l-~  248 (465)
T PRK04311        174 RGELVEIGGAFRIPDVMRQAGAKLVEVGTTNR----THLRDYEDAINENTALLLKVHTSNYRIVGFTKEVSEAELAAL-G  248 (465)
T ss_pred             CCCEEEECCCCCCHHHHHHCCCEEEECCCCCC----CCHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCHHHHHHH-H
T ss_conf             45356526765627899865988874376788----887999986495654899995687654674688999999999-9


Q ss_pred             CCCCCEEECCCCCCCCCCCCC----C-CCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCC
Q ss_conf             333201110122110000012----2-33222111233322574146544322344544422110122687531001222
Q gi|254780602|r  195 RNPHVHIISDDIYEHIVYRNC----Q-FSNIVNVEPSLYERTLVVNGVSKAYAMTGLRIGYAAGALSLIKSMIVLQGQQT  269 (400)
Q Consensus       195 ~~~~i~ii~De~Y~~l~~~~~----~-~~s~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~v~~~~li~~l~~~~~~~~  269 (400)
                      +++++.+++|---..|. +-.    + -++......  ..--++++|--|-+|  |-..|.+++.+++|+++++-.-...
T Consensus       249 ~~~~ip~~~DlGSG~l~-~~~~~gl~~Ep~v~~~l~--~GaDLVtFSGDKLLG--GPQAGIIvGkk~lI~~lkknPL~RA  323 (465)
T PRK04311        249 KEHGLPVVVDLGSGSLV-DLSQYGLPDEPTVQELLA--AGVDLVTFSGDKLLG--GPQAGIIVGKKELIERLKKHPLKRA  323 (465)
T ss_pred             HHCCCCEEEECCCCCCC-CCCCCCCCCCCCHHHHHH--CCCCEEEEECCCCCC--CCCCCEEECHHHHHHHHHHCCCHHH
T ss_conf             87599279988875213-653126999998899997--299889985540147--9854337400999999986876142


Q ss_pred             CCCCCCCCCCCCCCC----CCCC--------CCCCCCCCCCCCCCCCHHHHHHCCC-CC--EEEEC----CCCEEEEEEC
Q ss_conf             332222222222223----4676--------4322222211000000024553047-76--03302----7408998626
Q gi|254780602|r  270 SGACSIAQWAAVEAL----NGPQ--------DFVVNNRKIFEYRRDLCVAQLQGVP-GI--RYMIP----DGAFYLYPSC  330 (400)
Q Consensus       270 ~~~~~~~q~a~~~~l----~~~~--------~~~~~~~~~~~~~r~~~~~~L~~~~-g~--~~~~p----~g~~y~~~~~  330 (400)
                      .-+......+..+.|    +...        ..+....+.+++|.+.+.+.|++.. ++  ++.+.    -||-+=-.++
T Consensus       324 lRvDKltLaaLeaTL~~Yl~~~~~~~~IP~l~mLt~~~~~L~~rA~~l~~~l~~~~~~~~v~i~~~~s~vGGGslP~~~l  403 (465)
T PRK04311        324 LRVDKLTLAALEATLRLYLNPERLAEKIPTLRLLTRSPEELRARAERLAAALKAALGEFAVSVVPSFSQVGGGSLPVDRL  403 (465)
T ss_pred             HCCCHHHHHHHHHHHHHHHCCCCHHCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCC
T ss_conf             32599999999999999959210001176899875999999999999999987425784289997766457887878878


Q ss_pred             CCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCCCCEEEEEE-ECCHHHHHHHHHHHHHHHH
Q ss_conf             410233211332248989999999987397998350228997289996-2999999999999999998
Q gi|254780602|r  331 QDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGHGPSIRISY-AVSDAILEEACVRIKRFCH  397 (400)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~iRis~-~~~~e~l~~al~rl~~~l~  397 (400)
                      +...   ........+..++..+| ++..+-++.-.   .++.+-+-+ +..+++.+.-.++|++.++
T Consensus       404 pS~~---v~i~~~~~s~~~L~~~L-R~~~~PII~RI---~~d~~~LDlRTi~~~d~~~i~~~l~~il~  464 (465)
T PRK04311        404 PSAA---LTLTPKGRSLEALAARL-RLLPPPVIGRI---EDGRLLLDLRTLEEEDEEALAAALLELLN  464 (465)
T ss_pred             CEEE---EEEECCCCCHHHHHHHH-HCCCCCEEEEE---ECCEEEEEECCCCHHHHHHHHHHHHHHHH
T ss_conf             8679---99857999999999998-36999889999---88979999163897899999999999961


No 304
>pfam03841 SelA L-seryl-tRNA selenium transferase.
Probab=98.85  E-value=1.4e-09  Score=78.34  Aligned_cols=263  Identities=19%  Similarity=0.150  Sum_probs=153.1

Q ss_pred             EEECCCCCCCCCCCHHHHHHHHHHHHCC-CCCCCCCCCCHHHHHH-HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             2665658974988999999999998388-7569987789899999-9998642101333322332334543333222222
Q gi|254780602|r   33 VLCLTAGEPDFDMPENVKYAVVRAMERG-ETKYTAVAGISPLREA-IVEKFRRDNDLHYTSDQIIVGTGAKHVIFNALMA  110 (400)
Q Consensus        33 ii~l~~G~p~~~~p~~i~~a~~~al~~~-~~~Y~~~~G~~~lR~a-ia~~~~~~~g~~~~~e~I~it~G~~~~l~~~~~~  110 (400)
                      |++-+.|-.  |.|+.+.+++.++...- ...|--..|-..-|.. +.+.+.+..    ..|..+++|....|+++++.+
T Consensus         8 vlHTnLGRa--~l~~~a~~a~~~~~~~y~nLE~dl~~g~RG~R~~~~~~ll~~lt----gaE~a~vVNnnAaAv~L~l~~   81 (367)
T pfam03841         8 VLHTNLGRA--LLSEEAVEAAKEAARHYSNLEYDLESGKRGSRDSHLEELLCELT----GAEDALVVNNNAAAVLLVLNT   81 (367)
T ss_pred             EECCCCCCC--CCCHHHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHHHHHH----CCCEEEEECCCHHHHHHHHHH
T ss_conf             653678777--89999999999986177203666741776635789999999863----986599987838999999998


Q ss_pred             CCCCCCCCCCCCC------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEECCCCCCCCCCCCC-
Q ss_conf             2332232222333------323222222222222222222222322210333100012212201211354210000123-
Q gi|254780602|r  111 TVNMGDEVLIPRP------YWVSYPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQ-  183 (400)
Q Consensus       111 ~~~~Gd~Vlv~~P------~y~~y~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~k~i~l~nP~NPTG~v~s~-  183 (400)
                      +. .|.+|+|..=      .=.-.+.+.+..|++++.|-+...    -.+.+++++|+++|.+++-.+++|..-.=++. 
T Consensus        82 la-~g~evivSRGelVeiGgsfRiPdim~~sGa~LvEVGtTNr----T~l~DYe~AI~e~Ta~llkVH~SN~~i~GFt~~  156 (367)
T pfam03841        82 LA-QGKEVIISRGELVEIGGSFRIPDIMKQSGARLVEVGTTNR----THLKDYEQAINENTALLMKVHTSNYRIQGFTKE  156 (367)
T ss_pred             HH-CCCCEEEECCEEECCCCCCCCHHHHHHCCCEEEEECCCCC----CCHHHHHHHCCCCCEEEEEEECCCCEECCCCCC
T ss_conf             75-4890577555451238754408999965978998256688----898999987082461899994265122374677


Q ss_pred             CCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCC-----CCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf             333211122333332011101221100000122-----332221112333225741465443223445444221101226
Q gi|254780602|r  184 NRLRALADVLVRNPHVHIISDDIYEHIVYRNCQ-----FSNIVNVEPSLYERTLVVNGVSKAYAMTGLRIGYAAGALSLI  258 (400)
Q Consensus       184 ~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~-----~~s~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~v~~~~li  258 (400)
                      -.+++++++ +++|++.+++|--=..+. |-.+     -+++.....  ..--++++|--|-+|  |-..|.+++.+++|
T Consensus       157 v~~~el~~l-a~~~~ip~i~DlGSG~l~-d~~~~gl~~Ep~v~~~l~--~GaDlV~FSGDKLLG--GPQAGII~Gkk~lI  230 (367)
T pfam03841       157 VSLAELVAL-GKEHGLPVYYDLGSGSLV-DLSQYGLPKEPTVQELLA--LGVDLVSFSGDKLLG--GPQAGIIVGKKELI  230 (367)
T ss_pred             CCHHHHHHH-HHHCCCCEEEECCCCCEE-CCCCCCCCCCCCHHHHHH--CCCCEEEEECCCCCC--CCCCCEEEECHHHH
T ss_conf             999999999-987699679975866311-220017999998999997--399889986764568--98532476459999


Q ss_pred             HHHHHHCCCCCCCCCCCCCCCCCCCCCC---CCC---------CCCCCCCCCCCCCCCHHHHHHCC
Q ss_conf             8753100122233222222222222346---764---------32222221100000002455304
Q gi|254780602|r  259 KSMIVLQGQQTSGACSIAQWAAVEALNG---PQD---------FVVNNRKIFEYRRDLCVAQLQGV  312 (400)
Q Consensus       259 ~~l~~~~~~~~~~~~~~~q~a~~~~l~~---~~~---------~~~~~~~~~~~~r~~~~~~L~~~  312 (400)
                      +++++-.-....-+..+...+..+.|..   ++.         .+....+.+++|.+.+.+.|+..
T Consensus       231 ~~ikknPL~RAlRvDKltLaaLeatL~~Yl~~~~~~~~IP~l~mL~~~~~~L~~rA~~l~~~l~~~  296 (367)
T pfam03841       231 ERLKKNPLKRALRVDKLTLAALEATLRLYLNPEKLYEKIPTLRLLTQPLKELRAKAERLQKLLKAR  296 (367)
T ss_pred             HHHHHCCHHHHHCCCHHHHHHHHHHHHHHHCCCCHHCCCHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_conf             974647444544458899999999999984900000116589986399999999999999997675


No 305
>PRK08297 L-lysine aminotransferase; Provisional
Probab=98.85  E-value=1.9e-08  Score=71.46  Aligned_cols=275  Identities=15%  Similarity=0.152  Sum_probs=132.6

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCC----C----CC------CCCCCCCCCCCCCCCC-CCCCCCCCCC---CCC--------
Q ss_conf             3223323345433332222222----3----32------2322223333232222-2222222222---222--------
Q gi|254780602|r   90 TSDQIIVGTGAKHVIFNALMAT----V----NM------GDEVLIPRPYWVSYPD-MVALCGGIPV---FVD--------  143 (400)
Q Consensus        90 ~~e~I~it~G~~~~l~~~~~~~----~----~~------Gd~Vlv~~P~y~~y~~-~~~~~g~~~~---~v~--------  143 (400)
                      .-++|++++++++|+..++...    .    ..      +.+|+...-+|-.-.. .....|..+.   +.|        
T Consensus       118 ~l~~vff~nsGSEAvE~AlKlA~~~~~r~~~~~g~~~~~~~kii~~~~sYHG~T~gals~tg~~~~~~~~~p~~~~~~~~  197 (449)
T PRK08297        118 ALPHLFFVDGGALAVENALKVAFDWKSRHNEAHGIDPALGTRVLHLRGAFHGRSGYTLSLTNTDPVKTARFPKFDWPRID  197 (449)
T ss_pred             CCCEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCC
T ss_conf             77758861876899999999999986543002367776775699963653796077788617985335788888887788


Q ss_pred             -------CCCCCC--C-CCHHHHHHCCCCC---CCCCEEECCC-CCCCC-CCCCCCCCCCCCCCCCCCCCCEEECCCCCC
Q ss_conf             -------222232--2-2103331000122---1220121135-42100-001233332111223333320111012211
Q gi|254780602|r  144 -------TQQDDN--F-QVSPEKLEQAITP---KTKWLFLNSP-SNPSG-VVYSQNRLRALADVLVRNPHVHIISDDIYE  208 (400)
Q Consensus       144 -------~~~~~~--~-~~d~~~l~~~i~~---~~k~i~l~nP-~NPTG-~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~  208 (400)
                             .+.+..  . .-+++++++.+..   ++-++++ -| +--.| .+.+++-++++-++| ++||+++|.||+..
T Consensus       198 ~P~~~~~~~~~~~~~~~~~~l~~l~~~i~~~~~~iAAvIv-EPIqG~gG~~~~p~~yl~~lr~lc-~~~giLLI~DEVqt  275 (449)
T PRK08297        198 APYVRPGLDADAVAALEAEALRQARAAFEAHPHDIACFIA-EPIQGEGGDRHFRPEFFAAMRALC-DEHDALLIFDEVQT  275 (449)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEE-ECCCCCCCCCCCCHHHHHHHHHHH-HHCCCEEECCCCEE
T ss_conf             9987789873016678999999999999858997799999-678747799889989999999999-97188454452202


Q ss_pred             CCCCCCCCCCC-CCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHH---HHHHHHHHC--CCCCCCCCCCCCCCCCC
Q ss_conf             00000122332-2211123332257414654432234454442211012---268753100--12223322222222222
Q gi|254780602|r  209 HIVYRNCQFSN-IVNVEPSLYERTLVVNGVSKAYAMTGLRIGYAAGALS---LIKSMIVLQ--GQQTSGACSIAQWAAVE  282 (400)
Q Consensus       209 ~l~~~~~~~~s-~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~v~~~~---li~~l~~~~--~~~~~~~~~~~q~a~~~  282 (400)
                      .+.=.|.-+.+ -..+.|+     |+  +++|..+.     |.+.+...   .........  ...+.+.+.+...++.+
T Consensus       276 GfGRTG~~fa~e~~gv~PD-----ii--t~~Kgl~~-----G~~~~~~~~~~~~~~~~~~~~~~~sTf~Gnp~acaaala  343 (449)
T PRK08297        276 GCGLTGTAWAYQQLGVAPD-----VV--AFGKKTQV-----CGVMAGRRVDEVADNVFAVSSRINSTWGGNLTDMVRARR  343 (449)
T ss_pred             CCCCCCCHHHCCCCCCCCC-----EE--EECCCCCC-----CCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH
T ss_conf             7876765133133589998-----89--87763345-----507788999999988641687778888988899999999


Q ss_pred             CCCCC--CCCCCCCCCCCCCCCCCHHHHHHCC----CCC-EEEECCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             23467--6432222221100000002455304----776-0330274089986264102332113322489899999999
Q gi|254780602|r  283 ALNGP--QDFVVNNRKIFEYRRDLCVAQLQGV----PGI-RYMIPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLL  355 (400)
Q Consensus       283 ~l~~~--~~~~~~~~~~~~~~r~~~~~~L~~~----~g~-~~~~p~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll  355 (400)
                      .|+--  ++.+++    .++.-+++.+.|+++    |.+ .=++.. |+++=+++++.           ....+++..+ 
T Consensus       344 ~L~ii~~e~l~~~----~~~~g~~l~~~L~~l~~~~p~ii~dVRG~-GLm~giel~~~-----------~~~~~~~~~~-  406 (449)
T PRK08297        344 ILEVIEAEGLFDR----ARQQGAYLLARLDELAAEFPAVVLDPRGR-GLMCAFSLPTT-----------ADRDELIRRL-  406 (449)
T ss_pred             HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHCCCCEEEEEEC-CEEEEEECCCH-----------HHHHHHHHHH-
T ss_conf             9999843049999----99999999999999997689844653115-68999982886-----------7899999999-


Q ss_pred             HHCCEEEECCCCCCCCCEEEEE--EECCHHHHHHHHHHHHHHHHHC
Q ss_conf             8739799835022899728999--6299999999999999999860
Q gi|254780602|r  356 EIEKVAVVQGSSFGHGPSIRIS--YAVSDAILEEACVRIKRFCHSL  399 (400)
Q Consensus       356 ~~~gV~v~pG~~Fg~~~~iRis--~~~~~e~l~~al~rl~~~l~~l  399 (400)
                      .++|+++.|..    .+.||++  +..+++++++++++|++.|++|
T Consensus       407 ~~~Gll~~~~g----~~~irl~PPL~it~~eid~~~~~l~~al~el  448 (449)
T PRK08297        407 WRERVILLPAG----EDSVRFRPALTVSRAEIDAAVDAVRRVLRTL  448 (449)
T ss_pred             HHCCCEEEECC----CCEEEEECCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             97895897579----9979998991288999999999999999986


No 306
>COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism]
Probab=98.79  E-value=1.5e-07  Score=66.02  Aligned_cols=328  Identities=11%  Similarity=0.045  Sum_probs=158.1

Q ss_pred             CHHHHHHHHHHHHCCCCCCC-CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC-------CCCCC-
Q ss_conf             99999999999838875699-8778989999999986421013333223323345433332222222-------33223-
Q gi|254780602|r   46 PENVKYAVVRAMERGETKYT-AVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFNALMAT-------VNMGD-  116 (400)
Q Consensus        46 p~~i~~a~~~al~~~~~~Y~-~~~G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l~~~~~~~-------~~~Gd-  116 (400)
                      -+.+.+|+.+.+++=.+-+. ...+.|.  ..+|+.+-+...- -+-++|++|++++++...++...       -+|+. 
T Consensus        62 ~~~i~~Ai~~Q~~~l~~~~~~~~t~~Pa--~~LA~~L~~~aP~-~~l~~vFf~~sGSeAvEtAlKma~qY~~~~G~p~r~  138 (449)
T COG0161          62 RPEIAEAIKKQLDKLPHVMFGGFTHEPA--IELAEKLAELAPE-GGLDHVFFTDSGSEAVETALKMALQYWRARGQPQRK  138 (449)
T ss_pred             CHHHHHHHHHHHHHCCCCHHCCCCCCHH--HHHHHHHHHHCCC-CCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCE
T ss_conf             7799999999998577401145578369--9999999986798-775679980896189999999999999965997531


Q ss_pred             CCCCCCCCCCCCCC-CCCCCC-------------CCCCCCCC------CCCCCCC----CHHHHHHCCCCC----CCCCE
Q ss_conf             22223333232222-222222-------------22222222------2223222----103331000122----12201
Q gi|254780602|r  117 EVLIPRPYWVSYPD-MVALCG-------------GIPVFVDT------QQDDNFQ----VSPEKLEQAITP----KTKWL  168 (400)
Q Consensus       117 ~Vlv~~P~y~~y~~-~~~~~g-------------~~~~~v~~------~~~~~~~----~d~~~l~~~i~~----~~k~i  168 (400)
                      .+|.-..+|-.-.- .....|             ....+++.      ..++.+.    -..++|++.|..    +.-++
T Consensus       139 ~~Isr~~gYHG~T~ga~Sv~g~~~~~~~~~~~ll~~~~~~~~P~~y~~~~~~~~~~~~~~~a~~le~~i~~~g~~~IAAf  218 (449)
T COG0161         139 KFISRRNGYHGDTLGAMSVGGPVALRHAFYDPLLPEVLHLPAPYAYRRGFFGEGDEEFAEAADELEALILEHGPETIAAF  218 (449)
T ss_pred             EEEEECCCCCCCCCHHEECCCCHHHHHHHCCCCCCCCEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf             89995267476653001356854555430144455762268996434577777748899999999999986095528999


Q ss_pred             EECCC-CC-CCCCC-CCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCC-CCCCCCCCCCEEEEECCCCCCCCCC
Q ss_conf             21135-42-10000-123333211122333332011101221100000122332-2211123332257414654432234
Q gi|254780602|r  169 FLNSP-SN-PSGVV-YSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSN-IVNVEPSLYERTLVVNGVSKAYAMT  244 (400)
Q Consensus       169 ~l~nP-~N-PTG~v-~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s-~~~~~~~~~~~~i~~~S~SK~~~~~  244 (400)
                      + .-| .. -+|.. +++.-++++-++| ++||+++|.||+=..|.=.|.-|-+ -..+.|+    .+   +++|.++-.
T Consensus       219 I-~EPv~g~agG~~~pp~~Yl~~vr~iC-~ky~ILlI~DEV~tGFGRTG~~FA~e~~gi~PD----i~---~~aKGLT~G  289 (449)
T COG0161         219 I-VEPVVGGAGGMLVPPPGYLKRVREIC-DKYGILLIADEVATGFGRTGKMFACEHAGIVPD----IL---CLAKGLTGG  289 (449)
T ss_pred             E-ECCCCCCCCCCCCCCHHHHHHHHHHH-HHCCCEEEECCCEECCCCCCHHHHHHHCCCCCC----EE---EECCCCCCC
T ss_conf             9-55200566775418768999999999-983947993011007885751556652599978----46---551310126


Q ss_pred             CCCCCCCCCHHHHHHHHHHH------CCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCHHHHHHC-CC--
Q ss_conf             45444221101226875310------0122233222222222222346--7643222222110000000245530-47--
Q gi|254780602|r  245 GLRIGYAAGALSLIKSMIVL------QGQQTSGACSIAQWAAVEALNG--PQDFVVNNRKIFEYRRDLCVAQLQG-VP--  313 (400)
Q Consensus       245 G~RiG~~v~~~~li~~l~~~------~~~~~~~~~~~~q~a~~~~l~~--~~~~~~~~~~~~~~~r~~~~~~L~~-~~--  313 (400)
                      =+-+|.++..+++.+.+..-      +.++.+ .+.+...++++-|+-  .++++++.+    +.-..+.+.|++ +.  
T Consensus       290 Y~Pl~a~l~~~~I~~~~~~~~~~~f~HG~TYs-ghPlacAaAla~L~i~e~e~l~~~~~----~~~~~l~~~L~~~l~~~  364 (449)
T COG0161         290 YLPLSAVLTSDRIYEAFSDGDAGAFMHGHTYS-GNPLACAAALANLDILEEEDLLERVA----EIGAYLQAGLQAALADH  364 (449)
T ss_pred             CHHHHHHHHHHHHHHHHHCCCCCEECCCCCCC-CCHHHHHHHHHHHHHHHHCCHHHHHH----HHHHHHHHHHHHHCCCC
T ss_conf             50107675059999998646687014478664-48999999998899998567999999----99999999998751369


Q ss_pred             -CCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCCCCEEEEE--EECCHHHHHHHHH
Q ss_conf             -7603302740899862641023321133224898999999998739799835022899728999--6299999999999
Q gi|254780602|r  314 -GIRYMIPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGHGPSIRIS--YAVSDAILEEACV  390 (400)
Q Consensus       314 -g~~~~~p~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~iRis--~~~~~e~l~~al~  390 (400)
                       .+.=++.-| +..=+++..-.....+.   ...-..-+...+.+.||.+.|..+     .+=++  |..+++++.+.++
T Consensus       365 p~VgdVR~~G-li~~iElv~d~~t~~~f---~~~~~~~~~~~~~e~Gl~iRp~g~-----~i~~~PPliit~~eid~l~~  435 (449)
T COG0161         365 PLVGDVRGLG-LIGAIELVADKATKTPF---EARVGARVRAAALERGLLIRPLGD-----VIYLMPPLIITREEIDELVD  435 (449)
T ss_pred             CCEEEEECCC-EEEEEEEECCCCCCCCC---HHHHHHHHHHHHHHCCEEEEECCC-----EEEECCCCCCCHHHHHHHHH
T ss_conf             9278722265-59999984156666640---456999999999978938955598-----89973883489999999999


Q ss_pred             HHHHHHHHC
Q ss_conf             999999860
Q gi|254780602|r  391 RIKRFCHSL  399 (400)
Q Consensus       391 rl~~~l~~l  399 (400)
                      ++++.++..
T Consensus       436 ~l~~al~~~  444 (449)
T COG0161         436 ALREALDET  444 (449)
T ss_pred             HHHHHHHHH
T ss_conf             999999998


No 307
>PRK04366 glycine dehydrogenase subunit 2; Validated
Probab=98.78  E-value=4e-08  Score=69.57  Aligned_cols=346  Identities=17%  Similarity=0.195  Sum_probs=176.7

Q ss_pred             HHHHHHHHHHHCC--C--CEEECCCCCCCCCCCHHHHHHHHHH--HHCCCCCCCC---CCCCHHHHHHHHHHHHHHCCCC
Q ss_conf             9999999999869--9--7266565897498899999999999--8388756998---7789899999999864210133
Q gi|254780602|r   18 VAAQRVRDLRSKG--I--DVLCLTAGEPDFDMPENVKYAVVRA--MERGETKYTA---VAGISPLREAIVEKFRRDNDLH   88 (400)
Q Consensus        18 ~~~~~~~~~~~~g--~--~ii~l~~G~p~~~~p~~i~~a~~~a--l~~~~~~Y~~---~~G~~~lR~aia~~~~~~~g~~   88 (400)
                      ++......+..++  .  .+|+|+..-+.+.  |.+-+.+..-  + ...+-|.|   ++|..++-..+.+++..-.|++
T Consensus        55 ev~Rh~~~Ls~kn~~~d~~~~pLGSCTMKyN--p~~~e~~a~~p~f-~~~HP~qp~~~~QG~Lq~i~elq~~L~eITGmd  131 (490)
T PRK04366         55 EVVRHYTRLSQKNYGVDTGFYPLGSCTMKYN--PKINEKVARLPGF-AELHPLQPEETVQGALELMYELQEWLKEITGMD  131 (490)
T ss_pred             HHHHHHHHHHHCCCCCCCCCEECCCCCCCCC--HHHHHHHHCCHHH-HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             9999999999723584556305651215448--7988577428435-526999987888999999999999999985998


Q ss_pred             CCCCCCCCCCCCCCCCCC---CCCCCC-CCC----CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCC
Q ss_conf             332233233454333322---222223-322----322223333232222222222222222222223222103331000
Q gi|254780602|r   89 YTSDQIIVGTGAKHVIFN---ALMATV-NMG----DEVLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQA  160 (400)
Q Consensus        89 ~~~e~I~it~G~~~~l~~---~~~~~~-~~G----d~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~  160 (400)
                      .  -..-...|++ |-+.   ++++.. ..|    ++||||+-.-......+.++|.+++.+++++++  .+|+++|+++
T Consensus       132 ~--vSlqP~aGAq-GE~aGll~Irayh~~~G~~~R~~vLiP~SAHGTNPAsA~maG~~Vv~v~~~~~G--~vDle~Lka~  206 (490)
T PRK04366        132 A--VTLQPAAGAH-GELTGLLIIRAYHEARGDTKRTEVIVPDSAHGTNPASAAMAGFKVVEIPSNEDG--LVDLEALKAA  206 (490)
T ss_pred             E--EEECCCCCHH-HHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHCCCEEEEECCCCCC--CCCHHHHHHH
T ss_conf             5--8406898559-999999999999997598577679985556789878887559446882579899--8199999998


Q ss_pred             CCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCC-C-CCCCEEEEECCCC
Q ss_conf             1221220121135421000012333321112233333201110122110000012233222111-2-3332257414654
Q gi|254780602|r  161 ITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVE-P-SLYERTLVVNGVS  238 (400)
Q Consensus       161 i~~~~k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~-~-~~~~~~i~~~S~S  238 (400)
                      +++++.+++++||| =.|. + .+++++|++++ .+.+-++-         |||.....+.... | ++.-.+.+++ +.
T Consensus       207 ~~~~~A~lMiTnPn-t~Gv-f-E~~i~ei~~iv-H~~Ggl~Y---------~DGANlNAi~G~~rPgd~G~Dv~HlN-LH  272 (490)
T PRK04366        207 VGEDTAALMLTNPN-TLGL-F-ERNIKEIAEIV-HEAGGLLY---------YDGANLNAILGKVRPGDMGFDVVHLN-LH  272 (490)
T ss_pred             HHHHHHEEEEECCC-CCCC-H-HHHHHHHHHHH-HHCCCEEE---------ECCCCCCCCCCCCCHHHCCCCEEEEE-CC
T ss_conf             75310313551576-5360-2-24899999999-97199898---------65756200013147766587457531-34


Q ss_pred             CCCCCC----CCCCCCCCCHHHHHHHHHHH---C---CCC-CC-CCCCCCCC-----------CCCCCC-CCCCCCCCCC
Q ss_conf             432234----45444221101226875310---0---122-23-32222222-----------222223-4676432222
Q gi|254780602|r  239 KAYAMT----GLRIGYAAGALSLIKSMIVL---Q---GQQ-TS-GACSIAQW-----------AAVEAL-NGPQDFVVNN  294 (400)
Q Consensus       239 K~~~~~----G~RiG~~v~~~~li~~l~~~---~---~~~-~~-~~~~~~q~-----------a~~~~l-~~~~~~~~~~  294 (400)
                      |+|+.|    |--.|-+...+++..-+-.-   .   .+. .. .+.++...           .+-.++ .-+.+.+.+.
T Consensus       273 KTFstPHGGGGPG~Gpv~v~~~L~pfLP~P~v~~~~~~y~l~~~~~~siG~v~~f~Gn~~vl~ra~~Yi~~lG~~GL~~~  352 (490)
T PRK04366        273 KTFSTPHGGGGPGSGPVGVKKELAPFLPVPVVEKDGGRYRLDYDRPKSIGRVRAFYGNFGVLVRAYAYIRSLGAEGLREV  352 (490)
T ss_pred             CCCCCCCCCCCCCCCCEEHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             23445788888887753255441200888702136883112678876632112024751889999999998667478999


Q ss_pred             CCCCCCCCCCHHHHHHCCCCCEEEECCCCE--EEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCC--C
Q ss_conf             221100000002455304776033027408--998626410233211332248989999999987397998350228--9
Q gi|254780602|r  295 RKIFEYRRDLCVAQLQGVPGIRYMIPDGAF--YLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFG--H  370 (400)
Q Consensus       295 ~~~~~~~r~~~~~~L~~~~g~~~~~p~g~~--y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg--~  370 (400)
                      -+.---|.+++.+.|++.-.+.+  ++--+  |+ ++...      .......+..+++++|++ +|.. .|-..|-  -
T Consensus       353 s~~AvLNANYl~~~L~~~~~~~y--~~~~~HEfv-~~~~~------~~k~~gv~~~DiaKrLlD-yG~H-~pT~~fPliV  421 (490)
T PRK04366        353 SEDAVLNANYLMARLKDVYDLPY--PRRCMHEFV-LSGKR------LKKETGVRALDIAKRLLD-YGFH-PPTIYFPLIV  421 (490)
T ss_pred             HHHHHHHHHHHHHHHHCCCCCCC--CCCEEEEEE-ECCHH------HHHHCCCCHHHHHHHHHC-CCCC-CCCCCCCCCC
T ss_conf             99999999999998535575788--997678999-64377------544239989999999857-7999-7610166657


Q ss_pred             CCEEEEEEE--CCHHHHHHHHHHHHHHH
Q ss_conf             972899962--99999999999999999
Q gi|254780602|r  371 GPSIRISYA--VSDAILEEACVRIKRFC  396 (400)
Q Consensus       371 ~~~iRis~~--~~~e~l~~al~rl~~~l  396 (400)
                      ++.+=|--+  .+.++|++-++.|++..
T Consensus       422 ~e~lmiEPTEsEske~LD~f~~am~~I~  449 (490)
T PRK04366        422 PEALMIEPTETESKETLDAFIDAMKEIA  449 (490)
T ss_pred             CCCEEECCCCCCCHHHHHHHHHHHHHHH
T ss_conf             8731536757779999999999999999


No 308
>COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism]
Probab=98.74  E-value=1.1e-08  Score=73.02  Aligned_cols=229  Identities=19%  Similarity=0.156  Sum_probs=138.5

Q ss_pred             EEECCCCCCCCCCCHHHHHHHHHHHHCCC-CCCCCCCCCHHHHH-HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             26656589749889999999999983887-56998778989999-99998642101333322332334543333222222
Q gi|254780602|r   33 VLCLTAGEPDFDMPENVKYAVVRAMERGE-TKYTAVAGISPLRE-AIVEKFRRDNDLHYTSDQIIVGTGAKHVIFNALMA  110 (400)
Q Consensus        33 ii~l~~G~p~~~~p~~i~~a~~~al~~~~-~~Y~~~~G~~~lR~-aia~~~~~~~g~~~~~e~I~it~G~~~~l~~~~~~  110 (400)
                      |++-+.|.+-  ..+++.+++.++++... ..|--..|...-|- .++...   .+.. ..+.++++|..+.++.++..+
T Consensus        29 v~~t~lG~s~--~~~e~iea~~~~~~~~v~Le~~l~~g~~~~R~~~~~~~~---~~~~-~aea~~ivnnn~aAVll~~~a  102 (395)
T COG1921          29 VLMTNLGRSL--YSPEAIEAMKEAMRAPVELETDLKTGKRGARLTELAELL---CGLT-GAEAAAIVNNNAAAVLLTLNA  102 (395)
T ss_pred             HEECCCCCCC--CCHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHH---HCCC-CHHHEEEECCCHHHHHHHHHH
T ss_conf             1001278766--798999999998505430356401231357779999998---3664-403325678828999998763


Q ss_pred             CCCCCCCCC------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEECCCCC-CCCCCCCC
Q ss_conf             233223222------23333232222222222222222222223222103331000122122012113542-10000123
Q gi|254780602|r  111 TVNMGDEVL------IPRPYWVSYPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSN-PSGVVYSQ  183 (400)
Q Consensus       111 ~~~~Gd~Vl------v~~P~y~~y~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~k~i~l~nP~N-PTG~v~s~  183 (400)
                      +..++ +|+      ++ ++=+....+++.+|++.+.+-...    .....+++.+|+++|++++-+.-+| +--...+.
T Consensus       103 l~~~~-EvVis~g~lV~-gg~~~v~d~~~~aG~~l~EvG~tn----~t~~~d~~~AIne~ta~llkV~s~~~~f~~~l~~  176 (395)
T COG1921         103 LAEGK-EVVVSRGELVE-GGAFRVPDIIRLAGAKLVEVGTTN----RTHLKDYELAINENTALLLKVHSSNYGFTGMLSE  176 (395)
T ss_pred             HCCCC-EEEEECCCCCC-CCCCCHHHHHHHCCCEEEEECCCC----CCCHHHHHHHHCCCCEEEEEEEECCCCCCCCCCH
T ss_conf             20577-17997131156-889986679997197799815657----6778889988545870589995036661464559


Q ss_pred             CCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             33321112233333201110122110000012233222111233322574146544322344544422110122687531
Q gi|254780602|r  184 NRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTGLRIGYAAGALSLIKSMIV  263 (400)
Q Consensus       184 ~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~v~~~~li~~l~~  263 (400)
                      +   +++++ ++++++.++.|.+=..++-............     --++++|--|.++  |-|-|.+++.+++++.+.+
T Consensus       177 ~---~l~~i-a~~~~lpvivD~aSg~~v~~e~~l~~~la~G-----aDLV~~SgdKllg--GPqaGii~GkKelI~~lq~  245 (395)
T COG1921         177 E---ELVEI-AHEKGLPVIVDLASGALVDKEPDLREALALG-----ADLVSFSGDKLLG--GPQAGIIVGKKELIEKLQS  245 (395)
T ss_pred             H---HHHHH-HHHCCCCEEEECCCCCCCCCCCCHHHHHHCC-----CCEEEEECCHHCC--CCCCCEEECHHHHHHHHHH
T ss_conf             9---99999-9876997799667763003554456888607-----9789975401127--9854337424999999976


Q ss_pred             HCCCCCCCCCCCCCCCCCCCC
Q ss_conf             001222332222222222223
Q gi|254780602|r  264 LQGQQTSGACSIAQWAAVEAL  284 (400)
Q Consensus       264 ~~~~~~~~~~~~~q~a~~~~l  284 (400)
                      ..-....-+..+.-.+...+|
T Consensus       246 ~~l~Ralrv~K~tla~l~~aL  266 (395)
T COG1921         246 HPLKRALRVDKETLAALEAAL  266 (395)
T ss_pred             HHHHHHHHCCCHHHHHHHHHH
T ss_conf             213343315827689999999


No 309
>COG3033 TnaA Tryptophanase [Amino acid transport and metabolism]
Probab=98.74  E-value=8.8e-08  Score=67.45  Aligned_cols=358  Identities=15%  Similarity=0.189  Sum_probs=201.5

Q ss_pred             HHHHHHHHHHCCCCEEECCCCCC--CCCCC---HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf             99999999986997266565897--49889---99999999998388756998778989999999986421013333223
Q gi|254780602|r   19 AAQRVRDLRSKGIDVLCLTAGEP--DFDMP---ENVKYAVVRAMERGETKYTAVAGISPLREAIVEKFRRDNDLHYTSDQ   93 (400)
Q Consensus        19 ~~~~~~~~~~~g~~ii~l~~G~p--~~~~p---~~i~~a~~~al~~~~~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~e~   93 (400)
                      ..++-+.++++|.+..-|..++.  |+-+.   -.+.+..--++-.|.-.|+.+.+...|++++-+.+    |.    +.
T Consensus        25 re~RE~al~~ag~N~F~l~Sedv~IDLLTDSGTgams~~qwaamm~GDEAYagsrs~~~L~~avkdif----Gf----q~   96 (471)
T COG3033          25 REYREEALKKAGYNPFLLDSEDVFIDLLTDSGTGAMTDKQWAAMMRGDEAYAGSRSYYALADAVKDIF----GF----QY   96 (471)
T ss_pred             HHHHHHHHHHCCCCEEECCCCCEEEEEECCCCCCCCCHHHHHHHHCCCHHHCCCCCHHHHHHHHHHHC----CC----EE
T ss_conf             99999999976998055155645788530588662538999988525354315533899999999861----73----46


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCC-----CCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCC------C--CCHHHHHHC
Q ss_conf             32334543333222222233223-----222233-332322222222222222222222232------2--210333100
Q gi|254780602|r   94 IIVGTGAKHVIFNALMATVNMGD-----EVLIPR-PYWVSYPDMVALCGGIPVFVDTQQDDN------F--QVSPEKLEQ  159 (400)
Q Consensus        94 I~it~G~~~~l~~~~~~~~~~Gd-----~Vlv~~-P~y~~y~~~~~~~g~~~~~v~~~~~~~------~--~~d~~~l~~  159 (400)
                      ++.|+-+..|=...+..+..+|+     ...+++ -.|..-+...+..|+.++-++.++..+      |  .+|++.|++
T Consensus        97 ~iPthQGRgAE~Il~~i~ik~~~~~pg~~~~~~sN~~FdTTr~h~~~ng~~~~n~~~~ea~d~~~~~pFKGd~D~~kLe~  176 (471)
T COG3033          97 TIPTHQGRGAENILIPILIKKGEQEPGSKMVAFSNYHFDTTRGHIQINGATPRNVYVDEAFDTEVKYPFKGNFDLEKLER  176 (471)
T ss_pred             EEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEECCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
T ss_conf             51255773177788999841032067741012345312022677875487021231665566455688778657999999


Q ss_pred             CCCC----CCCCEEECCCCC-CCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCC-C---CCC---CCCCCCCCCCCCCCC
Q ss_conf             0122----122012113542-100001233332111223333320111012211-0---000---012233222111233
Q gi|254780602|r  160 AITP----KTKWLFLNSPSN-PSGVVYSQNRLRALADVLVRNPHVHIISDDIYE-H---IVY---RNCQFSNIVNVEPSL  227 (400)
Q Consensus       160 ~i~~----~~k~i~l~nP~N-PTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~-~---l~~---~~~~~~s~~~~~~~~  227 (400)
                      +|.+    +.-.|+++--+| -.|+-.|-+.++++.++ ++++++.++.|.+-. +   |+-   .+.+.-|+..+..++
T Consensus       177 lidevG~~nvp~I~~tiT~NsagGQpVSm~n~r~v~~i-a~ky~ipvv~Da~RfaENaYFIk~rE~gYrd~sI~~IarEm  255 (471)
T COG3033         177 LIDEVGADNVPYIVLTITNNSAGGQPVSMANMKAVYEI-AKKYDIPVVMDAARFAENAYFIKQREPGYRDWSIEEIAREM  255 (471)
T ss_pred             HHHHHCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHH-HHHCCCCEEEEHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH
T ss_conf             99873714586899999626667871207769999999-98719958964456654202234247655546099999999


Q ss_pred             CCEE-EEECCCCCCCCCCCCCC-CCCCCHHH----HHHHHHHHCCCCCCCCCCCCCC------CCCCCCCCC--CCCCCC
Q ss_conf             3225-74146544322344544-42211012----2687531001222332222222------222223467--643222
Q gi|254780602|r  228 YERT-LVVNGVSKAYAMTGLRI-GYAAGALS----LIKSMIVLQGQQTSGACSIAQW------AAVEALNGP--QDFVVN  293 (400)
Q Consensus       228 ~~~~-i~~~S~SK~~~~~G~Ri-G~~v~~~~----li~~l~~~~~~~~~~~~~~~q~------a~~~~l~~~--~~~~~~  293 (400)
                      .+.. -..-|.-|.--++   + |++....+    +-..+..+. ...-+.++....      +.+..|.+.  .+|+..
T Consensus       256 ~sYaD~~~mS~KKD~lvn---mGGfl~~~D~~~fDvy~~~~~~~-V~~eG~~tYGgl~GrdmealAvGL~e~~~~~yl~~  331 (471)
T COG3033         256 YSYADGCTMSAKKDGLVN---MGGFLCFKDDSFFDVYEECRTLV-VVQEGFPTYGGLAGRDMEALAVGLREGVNFDYLAH  331 (471)
T ss_pred             HHHHHHHEEECCCCCEEC---CCCEEEECCCCHHHHHHHHHHHE-EEECCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHH
T ss_conf             865124302025452422---46578864750778999987665-75126666576442328999978887427089999


Q ss_pred             CCCCCCCCCCCHHHHHHCCCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCC--CCCC-
Q ss_conf             2221100000002455304776033027408998626410233211332248989999999987397998350--2289-
Q gi|254780602|r  294 NRKIFEYRRDLCVAQLQGVPGIRYMIPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGS--SFGH-  370 (400)
Q Consensus       294 ~~~~~~~~r~~~~~~L~~~~g~~~~~p~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~--~Fg~-  370 (400)
                      ..    .+.+++.+.|.+. |+.+..|-||--+|+|..++.. +.+..  ......|+..|..+.||-.+---  .||. 
T Consensus       332 Rv----~Qv~YL~~~l~~~-GVpi~~paGGHavfvda~~~lp-hip~e--qFpaqala~ely~e~GiRavElG~~~~~rd  403 (471)
T COG3033         332 RV----AQVQYLADGLEEA-GVPIVQPAGGHAVFVDAGKFLP-HIPAE--QFPAQALACELYKEAGIRAVELGSFSLGRD  403 (471)
T ss_pred             HH----HHHHHHHHHHHHC-CCEEEECCCCCEEEEEHHHHCC-CCCHH--HCCHHHHHHHHHHHHCEEEEEEECEECCCC
T ss_conf             99----9999999888865-9736852787169963456367-78824--484778999999983823664201111558


Q ss_pred             -C---------CEEEEEEE------CCHHHHHHHHHHHHHHHH
Q ss_conf             -9---------72899962------999999999999999998
Q gi|254780602|r  371 -G---------PSIRISYA------VSDAILEEACVRIKRFCH  397 (400)
Q Consensus       371 -~---------~~iRis~~------~~~e~l~~al~rl~~~l~  397 (400)
                       +         .-+|+++-      ...+-+.+++.++++--+
T Consensus       404 ~ktg~q~~~~~elvRltipRrtYt~~HmD~V~~a~~~l~e~~~  446 (471)
T COG3033         404 PKTGKQHPPPAELVRLTIPRRTYTQTHMDFVIEAFKALKENAE  446 (471)
T ss_pred             CCCCCCCCCCHHEEEEECCCCCCCHHHHHHHHHHHHHHHHCCC
T ss_conf             7764347871230467435111456679999999999985424


No 310
>TIGR01885 Orn_aminotrans ornithine--oxo-acid transaminase; InterPro: IPR010164   Ornithine aminotransferase catalyses the conversion of L-ornithine and a 2-oxo acid to L-glutamate 5-semialdehyde and an L-amino acid. This enzyme is found in low-GC bacteria, where it is responsible for the fourth step in arginine biosynthesis, and in the mitochondrial matrix of eukaryotes, where it controls L-ornithine levels in tissues. In human hereditary ornithine aminotransferase deficiency, the elevated levels of intraocular concentrations of ornithine are responsible for gyrate atrophy, which affects the CNS and peripheral nervous system ; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding.
Probab=98.72  E-value=4.5e-08  Score=69.24  Aligned_cols=337  Identities=15%  Similarity=0.142  Sum_probs=181.0

Q ss_pred             CCCCEEECCCCCCCCC---CCHHHHHHHHHHHHC-CCC---CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf             6997266565897498---899999999999838-875---699877898999999998642101333322332334543
Q gi|254780602|r   29 KGIDVLCLTAGEPDFD---MPENVKYAVVRAMER-GET---KYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAK  101 (400)
Q Consensus        29 ~g~~ii~l~~G~p~~~---~p~~i~~a~~~al~~-~~~---~Y~~~~G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~  101 (400)
                      +|+.-+||=.|..-+.   -.|.|++|+++-++. +.+   -|-+..|      ..++++.+.+|-.  -+.|++-|-+.
T Consensus        40 eG~~Y~D~LSaYSavNqGHchP~i~~Al~~Q~~KlTL~Sraf~nd~lg------~~~~~~t~LfgGk--~~~vL~mNTGa  111 (426)
T TIGR01885        40 EGREYLDFLSAYSAVNQGHCHPKIVNALKNQADKLTLTSRAFHNDVLG------EFAKYLTKLFGGK--YEKVLPMNTGA  111 (426)
T ss_pred             CCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHCCHHH------HHHHHHHHHCCCC--CCEEECCCCCH
T ss_conf             888864100255440137677168999999985137102766060357------8999999754995--10560456873


Q ss_pred             CCCCCCCCCC-----CC---CCC--CCCCCCCCCCC-CCCCC---CCC-CCCCCCCCCCC----CCCCCC----HHHHHH
Q ss_conf             3332222222-----33---223--22223333232-22222---222-22222222222----232221----033310
Q gi|254780602|r  102 HVIFNALMAT-----VN---MGD--EVLIPRPYWVS-YPDMV---ALC-GGIPVFVDTQQ----DDNFQV----SPEKLE  158 (400)
Q Consensus       102 ~~l~~~~~~~-----~~---~Gd--~Vlv~~P~y~~-y~~~~---~~~-g~~~~~v~~~~----~~~~~~----d~~~l~  158 (400)
                      +|-..++..-     ..   |.+  +||...=.|.. -..++   .-. -.+--+-|+-+    .++|..    |+|+|+
T Consensus       112 EAvEtA~KLAR~WgY~~K~ip~~kA~ii~~~GNFhGRTlgA~S~Std~e~~k~~FGPflPnvasGhgf~~iPYgd~EAl~  191 (426)
T TIGR01885       112 EAVETALKLARKWGYEVKGIPRNKAKIIAASGNFHGRTLGAVSASTDSETSKKGFGPFLPNVASGHGFRKIPYGDLEALR  191 (426)
T ss_pred             HHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHH
T ss_conf             47999999999744135785576238998538873303544320267212006787967743357852115588878999


Q ss_pred             CCCC-C-----CCCCEEECCC-CCCCCCCCCCC-CCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC-CCCC--CCCCC
Q ss_conf             0012-2-----1220121135-42100001233-3321112233333201110122110000012233-2221--11233
Q gi|254780602|r  159 QAIT-P-----KTKWLFLNSP-SNPSGVVYSQN-RLRALADVLVRNPHVHIISDDIYEHIVYRNCQFS-NIVN--VEPSL  227 (400)
Q Consensus       159 ~~i~-~-----~~k~i~l~nP-~NPTG~v~s~~-~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~-s~~~--~~~~~  227 (400)
                      ++++ +     ++-|++| =| +==.|.|.+++ -+.++.++| ++|++++|.||+=-.|.=.|+-+. ....  +.|| 
T Consensus       192 ~aL~~P~~~GDnVAA~i~-EPIQGEAGvvvPp~gYl~~V~~LC-~~~nVLfI~DEiQTGlGRTGk~la~dh~~aev~PD-  268 (426)
T TIGR01885       192 KALQDPKKTGDNVAAFIL-EPIQGEAGVVVPPPGYLPGVRALC-KEHNVLFIADEIQTGLGRTGKLLACDHENAEVKPD-  268 (426)
T ss_pred             HHHHCCCCCCCCEEEEEE-CCCCCCCCEEECCCCHHHHHHHHH-HHCCCEEEEEEECCCCCHHHHHHHHHCCCCEECCC-
T ss_conf             997275778886899995-040354436848963578999986-55187289820003840254533101058820450-


Q ss_pred             CCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHH--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf             3225741465443223445444221101226875310--01222332222222222223467643222222110000000
Q gi|254780602|r  228 YERTLVVNGVSKAYAMTGLRIGYAAGALSLIKSMIVL--QGQQTSGACSIAQWAAVEALNGPQDFVVNNRKIFEYRRDLC  305 (400)
Q Consensus       228 ~~~~i~~~S~SK~~~~~G~RiG~~v~~~~li~~l~~~--~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~~  305 (400)
                          |++  +.|.++-.=+-|+.++++.|++.-+..=  ...+++|-+++.-++++++|+--++  +++.+.-.+.-+.+
T Consensus       269 ----i~l--LGKALsGGv~PiSa~la~~dim~vl~PGPF~HGSTfGGNPLAcavaiAaLeVL~~--ekL~~~A~~lG~~f  340 (426)
T TIGR01885       269 ----IVL--LGKALSGGVYPISAVLADDDIMSVLKPGPFEHGSTFGGNPLACAVAIAALEVLEE--EKLAERADQLGDMF  340 (426)
T ss_pred             ----CEE--EEHHHCCCCCCEEEEEECCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHH
T ss_conf             ----335--1123458946224366646401211764865677688757899999999998740--45068898832899


Q ss_pred             HHHHHCCC----CCEEEECCC-CEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCCCCEEEEE--E
Q ss_conf             24553047----760330274-0899862641023321133224898999999998739799835022899728999--6
Q gi|254780602|r  306 VAQLQGVP----GIRYMIPDG-AFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGHGPSIRIS--Y  378 (400)
Q Consensus       306 ~~~L~~~~----g~~~~~p~g-~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~iRis--~  378 (400)
                      .+.|+++.    ++ +..-.| |+++=+.+.+..       ....+.++.|.+| ++.|++.-|-.   .+.-|||+  +
T Consensus       341 ~~~L~~l~~~S~dv-v~EVRGkGLL~AIe~~~~k-------a~~~~~w~~Cl~~-k~~GLlak~~n---hd~~IR~aPPL  408 (426)
T TIGR01885       341 LDELKQLARESPDV-VKEVRGKGLLIAIEFKENK-------ADEIGAWDVCLRL-KENGLLAKPTN---HDKIIRLAPPL  408 (426)
T ss_pred             HHHHHHHHHHCCCC-EEHHCCCCCEEEEEEECCC-------CCCCCHHHHHHHH-HCCCCEECCCC---CCCEEEECCCC
T ss_conf             99999887507640-0011567216888850653-------3326466887885-20742101335---87068717885


Q ss_pred             ECCHHHHHHHHHHHHHHH
Q ss_conf             299999999999999999
Q gi|254780602|r  379 AVSDAILEEACVRIKRFC  396 (400)
Q Consensus       379 ~~~~e~l~~al~rl~~~l  396 (400)
                      ..++|+|+++++.|++.+
T Consensus       409 ~i~~E~L~~~ie~i~K~~  426 (426)
T TIGR01885       409 VITKEQLDEVIEIIRKTL  426 (426)
T ss_pred             CCCHHHHHHHHHHHHHCC
T ss_conf             263899999999986049


No 311
>PRK13578 ornithine decarboxylase; Provisional
Probab=98.71  E-value=3.4e-08  Score=69.93  Aligned_cols=151  Identities=18%  Similarity=0.216  Sum_probs=85.9

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCC---------CHHHHHHCCCCC
Q ss_conf             3233454333322222223322322223333232222-222222222222222223222---------103331000122
Q gi|254780602|r   94 IIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPD-MVALCGGIPVFVDTQQDDNFQ---------VSPEKLEQAITP  163 (400)
Q Consensus        94 I~it~G~~~~l~~~~~~~~~~Gd~Vlv~~P~y~~y~~-~~~~~g~~~~~v~~~~~~~~~---------~d~~~l~~~i~~  163 (400)
                      -+++||++.++..+++++|.|||.||++.=+--...+ ++.+.|++|++++...+ .|.         ++.+.+.+.|.+
T Consensus       193 yFvvNGTS~~nk~v~~a~~~pGD~VLvdRN~HKSv~~GALIlsGA~PVYl~p~rN-~~GiiggI~~~~f~~~~i~~~I~~  271 (720)
T PRK13578        193 YFVLNGTSASNKVVTNALLTPGDLVLFDRNNHKSNHHGALIQAGATPVYLETARN-PFGFIGGIDAHCFDEEYLREQIRE  271 (720)
T ss_pred             EEEECCCHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHCCCEEEEECCCCC-CCCEECCCCHHHCCHHHHHHHHHH
T ss_conf             9995771088999999745899999965643577777889866976799666467-565116748575275778988874


Q ss_pred             ---------CC-CCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCC-CCCCCC--CCCCC-CCCCCCCCC
Q ss_conf             ---------12-20121135421000012333321112233333201110122110-000012--23322-211123332
Q gi|254780602|r  164 ---------KT-KWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEH-IVYRNC--QFSNI-VNVEPSLYE  229 (400)
Q Consensus       164 ---------~~-k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~-l~~~~~--~~~s~-~~~~~~~~~  229 (400)
                               ++ ++.++++| +=-|.+|+.+++.   +.+.+. ...|+.||||.. ..|..-  ...++ ..+.++. .
T Consensus       272 ~~~~~a~~~~p~~~aVit~~-TYdGi~yn~~~I~---~~i~~~-~~~ilfDEAw~~~~~F~P~~~d~~p~~l~~gadd-p  345 (720)
T PRK13578        272 VAPERADEARPFRLAIIQLG-TYDGTIYNARQVV---DKIGHL-CDYILFDSAWVGYEQFIPMMADCSPLLLELNEND-P  345 (720)
T ss_pred             HCHHHHCCCCCCEEEEEECC-CCCCEEECHHHHH---HHHHHH-CCEEEEECCHHHHHHCCCCCCCCCCCCCCCCCCC-C
T ss_conf             36333123488618999468-7535423499999---998640-7838985110214432853112464333458777-6


Q ss_pred             EEEEECCCCCCCCCCCCCCC-CCCC
Q ss_conf             25741465443223445444-2211
Q gi|254780602|r  230 RTLVVNGVSKAYAMTGLRIG-YAAG  253 (400)
Q Consensus       230 ~~i~~~S~SK~~~~~G~RiG-~~v~  253 (400)
                      .++++.|..|..  +|+--+ ++..
T Consensus       346 ~i~vtQStHK~L--aafSQaS~IHv  368 (720)
T PRK13578        346 GIFVTQSVHKQQ--AGFSQTSQIHK  368 (720)
T ss_pred             CEEEEEEHHHHH--HHHCHHHEEEE
T ss_conf             504663065554--43222210122


No 312
>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase; InterPro: IPR012703   Phosphonates are a class of organophosphorus compounds, characterised by a stable C-P bond, which are found in a variety of biologically produced molecules including antiobiotics, lipids, proteins and polysaccharides . The functions of these molecules include phosphorus storage, cell communication, host recognition and chemical warfare. 2-Aminoethylphosphonate (AEP), the most common naturally occurring phosphonate, is an important precursor used in the biosynthesis of phosphonolipids, phosphonoproteins, and phosphonoglycans.   This entry represents 2-aminoethylphosphonate-pyruvate transaminase (AEPT)(2.6.1.37 from EC) which catalyses the interconversion of AEP and phosphonoacetaldehyde (P-Ald), coupled with the interconversion of pryuvate and L-alanine. In some bacterial species this is the first step in an AEP degradation pathway which allows them to utilise this compound as a source of carbon, nitrogen and phosphorus. Phosphonoacetaldeyhde hydrolase, often encoded by an adjacent gene, then converts P-Ald to acetaldehyde and phosphate.Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lyase complex as found in Escherichia coli.   The crystal structure of AEPT from Salmonella typhimurium has been studied to 2.2 A resolution . The protein is a homodimer where each subunit is composed of two domains, large and small. The large domain forms an alpha-beta complex characteristic of the aspartate transaminase family, while the small domain is comosed of highly twisted beta strands. The active site contains a pyridoxal 5'-phosphate cofactor and is found at the domain interface, being composed of residues from both subunits..
Probab=98.69  E-value=1.2e-07  Score=66.71  Aligned_cols=321  Identities=14%  Similarity=0.153  Sum_probs=187.5

Q ss_pred             CCCCHHHHHHHHHHHHCCCCCCCCCC--CCHHHHHHHHHHHHHHCCCCCC-CCCCCCCCCCCCCCCCCCCCCCC-CCCCC
Q ss_conf             98899999999999838875699877--8989999999986421013333-22332334543333222222233-22322
Q gi|254780602|r   43 FDMPENVKYAVVRAMERGETKYTAVA--GISPLREAIVEKFRRDNDLHYT-SDQIIVGTGAKHVIFNALMATVN-MGDEV  118 (400)
Q Consensus        43 ~~~p~~i~~a~~~al~~~~~~Y~~~~--G~~~lR~aia~~~~~~~g~~~~-~e~I~it~G~~~~l~~~~~~~~~-~Gd~V  118 (400)
                      +-+...+++||..       -|+...  -...+-+.|+..+-+.-+-+-+ ---|++--.++-+...++=..+. +.++|
T Consensus        12 LtTs~~vk~aMl~-------D~CtWD~dYn~~~~~~ir~~L~~la~~~~~~YT~VllQGSGtf~VEA~iGs~~pr~~~kl   84 (366)
T TIGR02326        12 LTTSKTVKEAMLV-------DWCTWDSDYNEDVVESIRQKLLKLATAEEEKYTTVLLQGSGTFAVEAVIGSAVPRKDGKL   84 (366)
T ss_pred             CCHHHHHHHHHHC-------CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHCCCCCCCCEE
T ss_conf             6300688886621-------045871553136799999999998606898546786127512555665411247889738


Q ss_pred             CCCC-CCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCC--CCEEECCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             2233-33232-22222222222222222222322210333100012212--20121135421000012333321112233
Q gi|254780602|r  119 LIPR-PYWVS-YPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQAITPKT--KWLFLNSPSNPSGVVYSQNRLRALADVLV  194 (400)
Q Consensus       119 lv~~-P~y~~-y~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~--k~i~l~nP~NPTG~v~s~~~l~~i~~~~a  194 (400)
                      ||.. =.|.. -..+++.++...+.+...|..  .+++.++++.++..+  .-|-+++----||..=|-+   +++.+ +
T Consensus        85 Lv~~NGAYG~R~~~ia~~l~i~~~~~~~~E~~--~~~~~~ve~~L~~dp~ItH~A~vHcETtTGiLNPi~---~~~~~-~  158 (366)
T TIGR02326        85 LVVINGAYGKRIAQIAEYLQIPHHVVETEENE--PTNVVEVEAILAADPAITHVALVHCETTTGILNPIE---AVAKV-A  158 (366)
T ss_pred             EEEECCCHHHHHHHHHHHHCCCEEEEECCCCC--CCCHHHHHHHHHCCCCCEEEEEEECCCCCCCCCHHH---HHHHH-H
T ss_conf             99717853478999999847861675158777--778899999985189712788983675266211289---99999-9


Q ss_pred             CCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCC-CCCCCCCCCCCCCHHHHHHH-------------
Q ss_conf             3332011101221100000122332221112333225741465443-22344544422110122687-------------
Q gi|254780602|r  195 RNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKA-YAMTGLRIGYAAGALSLIKS-------------  260 (400)
Q Consensus       195 ~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~-~~~~G~RiG~~v~~~~li~~-------------  260 (400)
                      ++|+..+|.|.- +  .|++-+ .++..+.-     -..+.|..|- -|+||  .||+++-..-+++             
T Consensus       159 ~~hGk~~ivDAM-S--SfGgi~-idi~~l~~-----D~LIssanKCi~GVPG--fgFviA~~~~L~~~~g~arSLsLDLy  227 (366)
T TIGR02326       159 KRHGKVTIVDAM-S--SFGGIP-IDIAELDI-----DYLISSANKCIQGVPG--FGFVIAKQAELEKCAGNARSLSLDLY  227 (366)
T ss_pred             HHCCCEEEEECC-C--CCCCCH-HHHHHHCC-----CEEEECCCCCCCCCCC--HHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf             855977998534-1--137600-11643256-----7635234781337684--36677689999862043210235489


Q ss_pred             --HHHHC---CCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEECCCCEEEEEECCCC
Q ss_conf             --53100---1222332222222222223467--6432222221100000002455304776033027408998626410
Q gi|254780602|r  261 --MIVLQ---GQQTSGACSIAQWAAVEALNGP--QDFVVNNRKIFEYRRDLCVAQLQGVPGIRYMIPDGAFYLYPSCQDL  333 (400)
Q Consensus       261 --l~~~~---~~~~~~~~~~~q~a~~~~l~~~--~~~~~~~~~~~~~~r~~~~~~L~~~~g~~~~~p~g~~y~~~~~~~~  333 (400)
                        ...+.   ..--+.+|+..-.|..+||.+.  |.-+....++|+.+.+.|.+.|+++ |++...++.       +..+
T Consensus       228 dQw~~M~~~~GkWRFTsPTHvV~Af~qAL~el~~EGGv~aR~~RY~~nq~~L~~~m~~L-GF~~ll~~~-------~~sP  299 (366)
T TIGR02326       228 DQWECMEKQHGKWRFTSPTHVVHAFAQALLELEKEGGVEARYQRYQSNQKLLVAGMRAL-GFEPLLDDE-------LQSP  299 (366)
T ss_pred             HHHHHHHCCCCCEEECCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHC-CCCCCCCHH-------HCCC
T ss_conf             99999644899622177268999999999999845897457899999999999999861-551147543-------4588


Q ss_pred             CCCCCCCCC-CCCCHHHHHHHHHHHCCEEEECCCCCCCCCEEEEE-EE-CCHHHHHHHHHHHHHHHH
Q ss_conf             233211332-24898999999998739799835022899728999-62-999999999999999998
Q gi|254780602|r  334 IGKKSPSGD-VIRTDLDFVNGLLEIEKVAVVQGSSFGHGPSIRIS-YA-VSDAILEEACVRIKRFCH  397 (400)
Q Consensus       334 ~~~~~~~~~-~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~iRis-~~-~~~e~l~~al~rl~~~l~  397 (400)
                      ......... ...+=.+|..+| +++|=.+.||.-=. -..+||. +| ...+++++.+..|++++.
T Consensus       300 IItsF~~P~~~~y~F~~fY~~l-k~~GFviYPGKvs~-~~~FRiG~IG~V~~~di~~l~~~I~~~~~  364 (366)
T TIGR02326       300 IITSFYSPEDPDYRFADFYQRL-KEQGFVIYPGKVSQ-VDTFRIGNIGDVDAADIERLVTAIGKALY  364 (366)
T ss_pred             EEEEEECCCCCCCHHHHHHHHH-HHCCCEECCCCCCC-CCCEECCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf             6898507788971389999999-76781762761045-66211167676388999999999998750


No 313
>TIGR00700 GABAtrnsam 4-aminobutyrate transaminase; InterPro: IPR004632   Eukaryotic 4-aminobutyrate aminotransferase (2.6.1.19 from EC) is a class III pyridoxal-phosphate-dependent aminotransferase. The enzyme catalyses the conversion of 4-aminobutanoate and 2-oxoglutarate into succinate semialdehyde and L-glutamate. The degree of sequence difference between this set and known bacterial examples is greater than the distance between, in either set, the most similar enzyme with a distinct function, and so the prokaryotic and eukaryotic sets have been placed into separate families.    This family describes known bacterial examples of the enzyme. The best archaeal matches are presumed but not trusted to have the equivalent function. Escherichia coli has two isozymes. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.; GO: 0003867 4-aminobutyrate transaminase activity, 0009448 gamma-aminobutyric acid metabolic process.
Probab=98.67  E-value=6.2e-08  Score=68.36  Aligned_cols=346  Identities=15%  Similarity=0.147  Sum_probs=184.3

Q ss_pred             CCCCEEECCCCC--CCC-CCCHHHHHHHHHHHHC-CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf             699726656589--749-8899999999999838-875699877898999999998642101333322332334543333
Q gi|254780602|r   29 KGIDVLCLTAGE--PDF-DMPENVKYAVVRAMER-GETKYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVI  104 (400)
Q Consensus        29 ~g~~ii~l~~G~--p~~-~~p~~i~~a~~~al~~-~~~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l  104 (400)
                      +|+..|||+.|=  -+. .-+|.+++|+++-+.+ ..+.|.=.. ++.+- ++|+.+++---.+=...-|++++|+ +|.
T Consensus        31 dGnr~IDfa~gIavln~GhshP~vV~AV~~Q~~ef~Ht~f~v~p-Ye~Yv-~lAEkln~iaPgSg~kk~~ffnsGA-EAV  107 (427)
T TIGR00700        31 DGNRYIDFAAGIAVLNVGHSHPKVVEAVKRQVEEFTHTAFQVVP-YESYV-ELAEKLNAIAPGSGEKKAVFFNSGA-EAV  107 (427)
T ss_pred             CCCEEEHHCCCHHHHCCCCCCHHHHHHHHHHHHHHCCCCCEEEC-CHHHH-HHHHHHCCCCCCCCCHHEEEECCCH-HHH
T ss_conf             77521000110232036898735899999999974388534521-62589-9999971578897310002111543-788


Q ss_pred             CCCC---CCCCCCCCCCCCCCCCCCCCCCCCCCCCC--------------CCCCCCCCC---------CCCCC-CHHHHH
Q ss_conf             2222---22233223222233332322222222222--------------222222222---------23222-103331
Q gi|254780602|r  105 FNAL---MATVNMGDEVLIPRPYWVSYPDMVALCGG--------------IPVFVDTQQ---------DDNFQ-VSPEKL  157 (400)
Q Consensus       105 ~~~~---~~~~~~Gd~Vlv~~P~y~~y~~~~~~~g~--------------~~~~v~~~~---------~~~~~-~d~~~l  157 (400)
                      ..+.   +..+.+ .-|+-.+-.|-.=..+...+=.              .++.+|...         +..+. +.+.++
T Consensus       108 ENAVKIAR~yTgr-pgVvaF~~gfHGRTnmTMalT~Kv~PYK~GFGPFapevY~aP~py~y~~~~~~~q~s~d~m~~~A~  186 (427)
T TIGR00700       108 ENAVKIARKYTGR-PGVVAFDRGFHGRTNMTMALTAKVKPYKIGFGPFAPEVYRAPYPYDYRDIALDKQESLDDMVLAAI  186 (427)
T ss_pred             HHHHHHHHHHCCC-CCEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf             8899999874589-616863687466126788765227873457888674521168872002433442222003899999


Q ss_pred             HCC------CCCCCCCEEECCC-CCCCCCCCC-CCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCC----CCCCCCCCC
Q ss_conf             000------1221220121135-421000012-3333211122333332011101221100000122----332221112
Q gi|254780602|r  158 EQA------ITPKTKWLFLNSP-SNPSGVVYS-QNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQ----FSNIVNVEP  225 (400)
Q Consensus       158 ~~~------i~~~~k~i~l~nP-~NPTG~v~s-~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~----~~s~~~~~~  225 (400)
                      ++.      |.+++-+-++.-| +==-|-+.+ ++.+.+|.+|| ++|+|..|.||+-..|.=.|.-    |...-.+.|
T Consensus       187 ~~~f~~dkqv~a~~vAa~v~EPvQGEGGFivp~k~fv~a~~~~C-~ehgiVfiADEvQtGFARTG~~FA~eH~~~dGl~P  265 (427)
T TIGR00700       187 EALFVADKQVEAENVAAVVIEPVQGEGGFIVPAKEFVAAVLDLC-KEHGIVFIADEVQTGFARTGKLFAIEHYDDDGLKP  265 (427)
T ss_pred             HHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHH-HHCCEEEEECCCCCCCCHHCCCEEEEECCCCCCCC
T ss_conf             98312103325010437897322478873338588999999975-43875899725456800002112541006788875


Q ss_pred             CCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCC
Q ss_conf             3332257414654432234454442211012268753100122233222222222222346--76432222221100000
Q gi|254780602|r  226 SLYERTLVVNGVSKAYAMTGLRIGYAAGALSLIKSMIVLQGQQTSGACSIAQWAAVEALNG--PQDFVVNNRKIFEYRRD  303 (400)
Q Consensus       226 ~~~~~~i~~~S~SK~~~~~G~RiG~~v~~~~li~~l~~~~~~~~~~~~~~~q~a~~~~l~~--~~~~~~~~~~~~~~~r~  303 (400)
                      |     +  -+.||+++ .|+-+.-+++..+++++-.-=-=-.+++-+++...|+.+.|+-  .+...|+-++.-+.-.|
T Consensus       266 D-----L--it~aKslA-~GlPLSgV~GrAeimdApapGgLGGTyaGnPlacAAAlAvl~iIe~egL~ERa~qig~~~~d  337 (427)
T TIGR00700       266 D-----L--ITVAKSLA-DGLPLSGVVGRAEIMDAPAPGGLGGTYAGNPLACAAALAVLDIIEEEGLIERAEQIGKLVKD  337 (427)
T ss_pred             C-----H--HHHHHHHH-CCCCCCHHHCCHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf             1-----8--87866773-56862111044121168888888775568879999999999863113124789998788988


Q ss_pred             CHHHHHHCCCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHH---HHHCCEEEECCCCCCCCCEEEEE--E
Q ss_conf             002455304776033027408998626410233211332248989999999---98739799835022899728999--6
Q gi|254780602|r  304 LCVAQLQGVPGIRYMIPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGL---LEIEKVAVVQGSSFGHGPSIRIS--Y  378 (400)
Q Consensus       304 ~~~~~L~~~~g~~~~~p~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~L---l~~~gV~v~pG~~Fg~~~~iRis--~  378 (400)
                      .+++.=+..|-+--++--|+|-. +.+-+-..+       ...|...++++   ..+.||++..+-.||  |=||+=  +
T Consensus       338 ~l~~~k~~~p~IgdvRglGaMiA-vE~vkdp~T-------~EPda~~a~~ia~~A~a~GlllLTcG~~G--NiIRfL~PL  407 (427)
T TIGR00700       338 KLIELKEEVPAIGDVRGLGAMIA-VELVKDPDT-------TEPDAALAEKIAAAALAAGLLLLTCGIYG--NIIRFLTPL  407 (427)
T ss_pred             HHHHHHHHCCCHHHHHCCCCEEE-EEEECCCCC-------CCCCHHHHHHHHHHHHHCCHHHHHCCHHC--CHHHHCCCC
T ss_conf             88888760672111202633578-886548878-------88317999999999975682212303011--555434886


Q ss_pred             ECCHHHHHHHHHHHHHHHH
Q ss_conf             2999999999999999998
Q gi|254780602|r  379 AVSDAILEEACVRIKRFCH  397 (400)
Q Consensus       379 ~~~~e~l~~al~rl~~~l~  397 (400)
                      +.+++.|.+||+.|.+.|.
T Consensus       408 tI~D~ll~egl~Il~a~L~  426 (427)
T TIGR00700       408 TISDELLDEGLDILEAALA  426 (427)
T ss_pred             CCCHHHHHHHHHHHHHHHC
T ss_conf             5467889889999999852


No 314
>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase; InterPro: IPR006233   Cystathionine beta-lyase (alternate name: beta-cystathionase) is one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys .; GO: 0004121 cystathionine beta-lyase activity, 0006520 amino acid metabolic process, 0005737 cytoplasm.
Probab=98.66  E-value=2.1e-08  Score=71.29  Aligned_cols=179  Identities=19%  Similarity=0.339  Sum_probs=122.8

Q ss_pred             HHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----C
Q ss_conf             838875699877898999999998642101333322332334543333222222233223222233332322222----2
Q gi|254780602|r   57 MERGETKYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDM----V  132 (400)
Q Consensus        57 l~~~~~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l~~~~~~~~~~Gd~Vlv~~P~y~~y~~~----~  132 (400)
                      -+++.+-|+- +|.+ ...|+++-+...-|    .-++.+-+.+..|+...+++++..||+||+.+=.|.+-+..    .
T Consensus        42 ~~~~~ltYG~-rGt~-T~~ALq~a~~elEG----~ag~~lyPsGlAAvT~~~LafvkaGDhvL~vdsaY~PTr~Fcd~vL  115 (389)
T TIGR01324        42 RAKDKLTYGI-RGTL-TTVALQDALAELEG----AAGVILYPSGLAAVTNALLAFVKAGDHVLVVDSAYKPTRRFCDIVL  115 (389)
T ss_pred             CCCCCEECCC-CCCC-HHHHHHHHHHHHCC----CCCEEEECCCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHH
T ss_conf             1277410134-6875-38899999997247----7760762475578889999887438837986464611589998875


Q ss_pred             CCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCC--CCCCEEECCCCCC-C
Q ss_conf             222222222222222322210333100012212201211354210000123333211122333--3320111012211-0
Q gi|254780602|r  133 ALCGGIPVFVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVR--NPHVHIISDDIYE-H  209 (400)
Q Consensus       133 ~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~--~~~i~ii~De~Y~-~  209 (400)
                      +..|.++.||+-.      +.+++|..+|+++||+|++-.|   ...++.-.++=+|++. |+  +.++.|+.|..++ .
T Consensus       116 kr~gv~~~YYDP~------igPe~ia~Li~pnTkv~flEaP---~S~TfE~qDIPaIaka-A~kv~~g~~~miDNTWaag  185 (389)
T TIGR01324       116 KRLGVEVEYYDPK------IGPEDIAALIKPNTKVVFLEAP---ASLTFEVQDIPAIAKA-ARKVAAGVVVMIDNTWAAG  185 (389)
T ss_pred             HHHCEEEEEECCC------CCHHHHHHHCCCCCEEEEEECC---CCCEECCCCHHHHHHH-HHHCCCCEEEEEECCCCCH
T ss_conf             3634458872788------6888898740888448998378---7451035884689999-8641898299963630200


Q ss_pred             CCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCC-CCCCCCCCCCCHHHHHHHHH
Q ss_conf             000012233222111233322574146544322-34454442211012268753
Q gi|254780602|r  210 IVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYA-MTGLRIGYAAGALSLIKSMI  262 (400)
Q Consensus       210 l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~-~~G~RiG~~v~~~~li~~l~  262 (400)
                      +.|..        ++   .+..|.+...+|..+ -.-.=+|-++++++-.+++.
T Consensus       186 llFkp--------L~---HgvdiSiqA~TKY~~GHSD~~~Gtv~an~~~w~qL~  228 (389)
T TIGR01324       186 LLFKP--------LE---HGVDISIQAATKYLAGHSDVLLGTVAANEDAWEQLL  228 (389)
T ss_pred             HHCCC--------CC---CCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHC
T ss_conf             10230--------01---786368750335575500245634775578998751


No 315
>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase; InterPro: IPR006238   This group of sequences represent cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys..
Probab=98.64  E-value=1.4e-08  Score=72.24  Aligned_cols=198  Identities=19%  Similarity=0.308  Sum_probs=134.5

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCC----CCCCCCCCCCCCCCC----
Q ss_conf             569987789899999999864210133332233233454333322222--2233223----222233332322222----
Q gi|254780602|r   62 TKYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFNALM--ATVNMGD----EVLIPRPYWVSYPDM----  131 (400)
Q Consensus        62 ~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l~~~~~--~~~~~Gd----~Vlv~~P~y~~y~~~----  131 (400)
                      +-|+-+ |.| .|.+|-..+.+..+.  ..++++..+.+..||..+.+  .++++||    +||-.+=-|..-..+    
T Consensus        41 YDYsRS-GNP-TR~~Le~~~AkL~~a--Pq~~al~~sSGMaAL~~~~~Glv~L~~GdnhtP~i~AgdDlYGG~~RLL~~~  116 (415)
T TIGR01329        41 YDYSRS-GNP-TRTALESLLAKLEKA--PQERALAVSSGMAALDVITRGLVLLNAGDNHTPEIIAGDDLYGGTDRLLTQL  116 (415)
T ss_pred             CCCCCC-CCH-HHHHHHHHHHHHHCC--CCCCEEEEECCHHHHHHHHHEEEEEECCCCCCCEEEECCCCCCHHHHHHHHH
T ss_conf             773468-980-478999998865127--5353588861367998864114566078886770784374565047899997


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCHHHHHHCCCC--CCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC--CEEECCCCC
Q ss_conf             2222222222222222322210333100012--212201211354210000123333211122333332--011101221
Q gi|254780602|r  132 VALCGGIPVFVDTQQDDNFQVSPEKLEQAIT--PKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPH--VHIISDDIY  207 (400)
Q Consensus       132 ~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~--~~~k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~--i~ii~De~Y  207 (400)
                      ....|..+++|++.       |+|++++++.  |++++++|=+|-||.-.+.+   +.+|++. ++.++  ..|+.|..-
T Consensus       117 ~~~~G~vv~~V~t~-------~~d~v~~~l~~~P~~~lv~LESPTNPl~~ivD---I~~i~~~-ah~~~~~~~V~vDNtm  185 (415)
T TIGR01329       117 ASRSGVVVVHVDTT-------DLDKVKAVLGDLPKTKLVLLESPTNPLIKIVD---IRKIAEA-AHALNEDALVVVDNTM  185 (415)
T ss_pred             HHCCCEEEEECCCC-------CHHHHHHHHHCCCHHEEEEECCCCCCCCEEEC---HHHHHHH-HHHCCCCCEEEEECCC
T ss_conf             43285289974898-------87999998606871207650388898624633---7899999-9850897189982220


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCC---CCCCCCC-HHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf             100000122332221112333225741465443223445---4442211-012268753100122233222222222222
Q gi|254780602|r  208 EHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTGL---RIGYAAG-ALSLIKSMIVLQGQQTSGACSIAQWAAVEA  283 (400)
Q Consensus       208 ~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~~~G~---RiG~~v~-~~~li~~l~~~~~~~~~~~~~~~q~a~~~~  283 (400)
                          .-+-.. ..+.+.|++   -|++.|.+|.++  |-   =.|.++. .+++.+++.-++....++.+++--|..++.
T Consensus       186 ----mSPl~c-~PL~LnPGa---D~v~~SATKfL~--GH~D~MaGvl~~k~e~~~~~~yF~~Ns~G~gLaP~DswLLlRG  255 (415)
T TIGR01329       186 ----MSPLLC-NPLELNPGA---DIVYESATKFLA--GHSDVMAGVLAVKSEEIAKKVYFLINSTGAGLAPFDSWLLLRG  255 (415)
T ss_pred             ----CCCCCC-CCCCCCCCC---CEEECCCCCCCC--CCCCCCCCEEEECCHHHHHHEEEEECCCCCCCCHHHHHHHHHH
T ss_conf             ----476678-875667897---578635342014--6401133557773712100011123366776651358999866


Q ss_pred             C
Q ss_conf             3
Q gi|254780602|r  284 L  284 (400)
Q Consensus       284 l  284 (400)
                      +
T Consensus       256 i  256 (415)
T TIGR01329       256 I  256 (415)
T ss_pred             H
T ss_conf             8


No 316
>COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism]
Probab=98.52  E-value=3.4e-08  Score=69.99  Aligned_cols=194  Identities=18%  Similarity=0.276  Sum_probs=120.8

Q ss_pred             CEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCC---CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC--C
Q ss_conf             72665658974988999999999998388756998---778989999999986421013333223323345433332--2
Q gi|254780602|r   32 DVLCLTAGEPDFDMPENVKYAVVRAMERGETKYTA---VAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIF--N  106 (400)
Q Consensus        32 ~ii~l~~G~p~~~~p~~i~~a~~~al~~~~~~Y~~---~~G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l~--~  106 (400)
                      -+|+|+.=-|.+.+--..+-+-..-+ ...+-|.|   .+|..++-..+.+|+..-.|.+  .=.+=.-+|++.-..  +
T Consensus        67 ~m~PLGSCTMK~Np~~e~~~~~~p~f-~~iHP~~pe~~vqG~l~li~~Lq~~L~~ITG~D--avsLQP~AGAqGE~aGll  143 (496)
T COG1003          67 GMIPLGSCTMKLNPKAEMKPATWPEF-ANIHPFQPEEQVQGYLELIYELQEWLKEITGMD--AVSLQPNAGAQGEYAGLL  143 (496)
T ss_pred             CCCCCCCCCCCCCCHHHCCCCCCCCH-HHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC--EEECCCCCCCCHHHHHHH
T ss_conf             76177645215584121122246004-424999986888999999999999999740976--264067877641567899


Q ss_pred             CCCCC-CCCC----CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEECCCCCCCCCCC
Q ss_conf             22222-3322----322223333232222222222222222222223222103331000122122012113542100001
Q gi|254780602|r  107 ALMAT-VNMG----DEVLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVVY  181 (400)
Q Consensus       107 ~~~~~-~~~G----d~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~k~i~l~nP~NPTG~v~  181 (400)
                      +++.. -+.|    +.+|+|+-.-......+.++|.+++.|+++++++  +|+|+|++++.+++.+++++||| -.| ++
T Consensus       144 ~Ir~YHe~rG~~~R~~~LIP~SAHGTNPASAam~G~~VV~V~~~~~G~--VDlddLk~k~~~~~AalMiTnPs-T~G-vF  219 (496)
T COG1003         144 AIRAYHESRGEGHRNICLIPDSAHGTNPASAAMAGFKVVVVKCDENGN--VDLDDLRAKAEDNLAALMITNPS-TLG-VF  219 (496)
T ss_pred             HHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHCCCEEEEEECCCCCC--CCHHHHHHHHCCCEEEEEECCCC-CCC-CC
T ss_conf             999999975887776798316556898656765485599983289887--16999998741311588861686-454-50


Q ss_pred             CCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCC-CC-CCCEEEEECCCCCCCCCC
Q ss_conf             2333321112233333201110122110000012233222111-23-332257414654432234
Q gi|254780602|r  182 SQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVE-PS-LYERTLVVNGVSKAYAMT  244 (400)
Q Consensus       182 s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~-~~-~~~~~i~~~S~SK~~~~~  244 (400)
                       .+.+++|+++. .+++-.+         .|||.....+..+. |+ +.-.+.+++ +.|+|+.|
T Consensus       220 -E~~I~ei~~iv-H~~Gg~v---------Y~DGANlNA~vG~~rPGd~G~DV~HlN-LHKTF~iP  272 (496)
T COG1003         220 -EEDIREICEIV-HEAGGQV---------YYDGANLNAIVGLARPGDMGFDVVHLN-LHKTFCIP  272 (496)
T ss_pred             -HHHHHHHHHHH-HHCCCEE---------EECCCCHHHHHCCCCCCCCCCCEEEEE-CCCCCCCC
T ss_conf             -45199999999-9729989---------844754352522556655656357752-23110258


No 317
>KOG1401 consensus
Probab=98.50  E-value=5e-07  Score=62.88  Aligned_cols=344  Identities=14%  Similarity=0.099  Sum_probs=175.5

Q ss_pred             HCCCCEEECC----CCCCCCCCCHHHHHHHHHHHHCC---CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf             8699726656----58974988999999999998388---7569987789899999999864210133332233233454
Q gi|254780602|r   28 SKGIDVLCLT----AGEPDFDMPENVKYAVVRAMERG---ETKYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGA  100 (400)
Q Consensus        28 ~~g~~ii~l~----~G~p~~~~p~~i~~a~~~al~~~---~~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~  100 (400)
                      ..|++.||+.    .+-++.. -|++.+++.+....-   .++|..-. .-+|-+.+.+..    +- -+++.|.+.|.+
T Consensus        53 ~~g~EyiD~~ssw~~~~~Gha-npev~ral~~q~~k~~hs~~~~~t~e-av~l~~~l~~~~----~~-~~~~rvff~nsG  125 (433)
T KOG1401          53 PDGKEYIDFTSSWAVTILGHA-NPEVARALAEQAKKLGHSSNGYFTLE-AVELEEVLSAVL----GK-GSAERVFFCNSG  125 (433)
T ss_pred             CCCCEEEEECCCHHCCCCCCC-CHHHHHHHHHHHHHHEEECCCCCCHH-HHHHHHHHHHCC----CC-CCCCEEEEECCC
T ss_conf             886644130011001355889-98999999998755344047532088-899999997423----56-874179995697


Q ss_pred             CCCCCCCCCCC----C--CCCCC--CCCCCCCCCCCC-CCCCCCCCCCCCCCCC---CCCCCC--CHHHHHHCCCCCCC-
Q ss_conf             33332222222----3--32232--222333323222-2222222222222222---223222--10333100012212-
Q gi|254780602|r  101 KHVIFNALMAT----V--NMGDE--VLIPRPYWVSYP-DMVALCGGIPVFVDTQ---QDDNFQ--VSPEKLEQAITPKT-  165 (400)
Q Consensus       101 ~~~l~~~~~~~----~--~~Gd~--Vlv~~P~y~~y~-~~~~~~g~~~~~v~~~---~~~~~~--~d~~~l~~~i~~~~-  165 (400)
                      ++|...++..-    +  .+-++  +|...=+|-... .....++...+..|.+   ++-.+.  -|..++++.++.+. 
T Consensus       126 TeAne~ALK~Ark~~~~~~~~~~t~~Iaf~nsyHG~tlgals~~~~s~y~~~~~p~~p~v~~~~ynd~t~l~k~~e~~~~  205 (433)
T KOG1401         126 TEANETALKFARKFTGKKHPEKKTKFIAFENSYHGRTLGALSVTGNSKYGLPFDPIAPDVVTAEYNDSTALEKLFESHKG  205 (433)
T ss_pred             CHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHCCC
T ss_conf             28999999999986353477664128998567577623666752346668888777985353055889999999984788


Q ss_pred             --CCEEECCCCCCCCCC--CCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCC-CCCCCCCCCCCCCCEEEEECCCCCC
Q ss_conf             --201211354210000--12333321112233333201110122110000012-2332221112333225741465443
Q gi|254780602|r  166 --KWLFLNSPSNPSGVV--YSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNC-QFSNIVNVEPSLYERTLVVNGVSKA  240 (400)
Q Consensus       166 --k~i~l~nP~NPTG~v--~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~-~~~s~~~~~~~~~~~~i~~~S~SK~  240 (400)
                        -++++ -|--=-|-+  ..++.++.|.+.| +++|+++|.||+--.|.-.+. -...+..+.|+       +.++.|.
T Consensus       206 ~IaAvIv-EPiqGaGG~~p~~peFl~~l~k~C-~~~~vl~I~DEV~tG~gR~g~~~a~e~~~~~PD-------I~t~aK~  276 (433)
T KOG1401         206 EIAAVIV-EPIQGAGGIIPADPEFLIGLRKEC-DDNGVLLIFDEVQTGLGRLGYGWAQEYFGVTPD-------ITTVAKP  276 (433)
T ss_pred             CEEEEEE-ECCCCCCCCCCCCHHHHHHHHHHH-HHCCCEEEEEHHHHCCCCCCHHHHHHHHCCCCC-------EEEEHHH
T ss_conf             5689997-134578886569889999999998-615966996034317653552778888586976-------0231020


Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHCC---CCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCHHHHHHCCCCC
Q ss_conf             22344544422110122687531001---22233222222222222346--76432222221100000002455304776
Q gi|254780602|r  241 YAMTGLRIGYAAGALSLIKSMIVLQG---QQTSGACSIAQWAAVEALNG--PQDFVVNNRKIFEYRRDLCVAQLQGVPGI  315 (400)
Q Consensus       241 ~~~~G~RiG~~v~~~~li~~l~~~~~---~~~~~~~~~~q~a~~~~l~~--~~~~~~~~~~~~~~~r~~~~~~L~~~~g~  315 (400)
                      ++ .|+-+|..++.+++.+.+..-..   -.+++.+++...++...|+.  ..+++++....-+.-|+.+.+.+.+-+..
T Consensus       277 L~-gGlPigA~~v~~kV~~~i~~~~~l~hg~Tf~gnpLacs~~~~~l~~l~~pe~~k~vs~~~k~L~~~l~e~~~~~~~~  355 (433)
T KOG1401         277 LG-GGLPIGATGVRDKVAEMISPGDHLYHGGTFSGNPLACSAGIKVLDELKDPETLKNVSKIGKELRKLLDEYLKKTPNS  355 (433)
T ss_pred             CC-CCCEEEEEEEHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf             36-88515788655778865188886555766578805554889999987188999989888789999999986479874


Q ss_pred             EEEECCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHH---HHHCCEEEECCCCCCCCCEEEEEEECCHHHHHHHHHHH
Q ss_conf             033027408998626410233211332248989999999---98739799835022899728999629999999999999
Q gi|254780602|r  316 RYMIPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGL---LEIEKVAVVQGSSFGHGPSIRISYAVSDAILEEACVRI  392 (400)
Q Consensus       316 ~~~~p~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~L---l~~~gV~v~pG~~Fg~~~~iRis~~~~~e~l~~al~rl  392 (400)
                      ..---.-++.+............   +.-..+-++...+   +.+.||-++|       .|+ ++....+|.++..++.+
T Consensus       356 i~g~~grgl~ig~~~~~p~~~~~---d~~~~~~ll~~~~~~~~~~~gv~i~P-------~~~-l~~~~~~E~i~~~l~i~  424 (433)
T KOG1401         356 ICGGVGRGLVIGFEFEGPVYKFA---DAAREQGLLILTLGKGLLEEGVRIAP-------IYL-LTVEHTPEVIQRLLTIL  424 (433)
T ss_pred             EEEEEEEEEEEEEEEECCHHHHH---HHHHHHHHHHHHHHCCCCCCEEEEEC-------CCC-CCCCCCHHHHHHHHHHH
T ss_conf             36775258899899830505430---13445568888763246225179955-------520-10568689999999999


Q ss_pred             HHHHHHC
Q ss_conf             9999860
Q gi|254780602|r  393 KRFCHSL  399 (400)
Q Consensus       393 ~~~l~~l  399 (400)
                      .+++..+
T Consensus       425 ~k~l~~l  431 (433)
T KOG1401         425 EKVLSAL  431 (433)
T ss_pred             HHHHHHH
T ss_conf             9999874


No 318
>KOG1360 consensus
Probab=98.46  E-value=3.6e-07  Score=63.71  Aligned_cols=220  Identities=15%  Similarity=0.138  Sum_probs=121.9

Q ss_pred             CHHHHHHCCCCC----CCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             103331000122----1220121135421000012333321112233333201110122110000012233222111233
Q gi|254780602|r  152 VSPEKLEQAITP----KTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSL  227 (400)
Q Consensus       152 ~d~~~l~~~i~~----~~k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~  227 (400)
                      -|++.|++++..    .+|.|-+-+-+.=+|.+.+   +++||++ +.+++.+-+.||++.-=.|+ .+...+..-+.-+
T Consensus       287 ND~~hL~~lL~~~~~svPKivAFEtVhSM~Gavcp---leelcDv-ah~yGAiTFlDEVHAVGlYG-~rGaGvgerdGvm  361 (570)
T KOG1360         287 NDLDHLEQLLQSSPKSVPKIVAFETVHSMDGAVCP---LEELCDV-AHKYGAITFLDEVHAVGLYG-PRGAGVGERDGVM  361 (570)
T ss_pred             CCHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCC---HHHHHHH-HHHHCCEEEEEHHHHHCCCC-CCCCCCCCCCCCC
T ss_conf             99899999997579888826887664026777577---8999778-87717545310123100215-7778766567752


Q ss_pred             CCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCC---CCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCC
Q ss_conf             322574146544322344544422110122687531001222---33222222222222346--7643222222110000
Q gi|254780602|r  228 YERTLVVNGVSKAYAMTGLRIGYAAGALSLIKSMIVLQGQQT---SGACSIAQWAAVEALNG--PQDFVVNNRKIFEYRR  302 (400)
Q Consensus       228 ~~~~i~~~S~SK~~~~~G~RiG~~v~~~~li~~l~~~~~~~~---~~~~~~~q~a~~~~l~~--~~~~~~~~~~~~~~~r  302 (400)
                      ..--|+.+++.|.||+-|   ||+.+...+++.++.+..-..   +-+|++. ..++++.+.  .++- ...|..-+++-
T Consensus       362 ~kvDiIsGTLgKafGcVG---GYIAat~~LvDmiRSyAaGFIFTTSLPP~vl-~GAleaVr~lk~~eg-~~lR~~hqrnv  436 (570)
T KOG1360         362 HKVDIISGTLGKAFGCVG---GYIAATRKLVDMIRSYAAGFIFTTSLPPMVL-AGALEAVRILKSEEG-RVLRRQHQRNV  436 (570)
T ss_pred             HHHHHCCCCHHHHCCCCC---CEEHHHHHHHHHHHHHCCCEEEECCCCHHHH-HHHHHHHHHHHHHHH-HHHHHHHHHHH
T ss_conf             032200140455416654---2330044699999974686687337982888-728999999863254-78999999999


Q ss_pred             CCHHHHHHCCCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCC--CC--EEEEEE
Q ss_conf             00024553047760330274089986264102332113322489899999999873979983502289--97--289996
Q gi|254780602|r  303 DLCVAQLQGVPGIRYMIPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGH--GP--SIRISY  378 (400)
Q Consensus       303 ~~~~~~L~~~~g~~~~~p~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~--~~--~iRis~  378 (400)
                      .++.+.|.++ |+.+.+-. +--+=+.+.          +. ....+.++.|+.+++|.|.. ..|-.  .|  -+||+-
T Consensus       437 ~~~kq~l~~~-GiPVi~~p-SHIiPv~vg----------da-~l~~~~sd~Li~~h~iYvQa-INyPTV~rG~E~LRiaP  502 (570)
T KOG1360         437 KYVKQLLMEL-GIPVIPNP-SHIIPVRVG----------DA-ALAKQASDILISKHNIYVQA-INYPTVARGTERLRIAP  502 (570)
T ss_pred             HHHHHHHHHC-CCCCCCCC-CCEEEEECC----------CH-HHHHHHHHHHHHHCCEEEEE-CCCCCCCCCCEEEECCC
T ss_conf             9999999874-98634788-653335506----------77-77777789988752757885-26874566601342179


Q ss_pred             EC--CHHHHHHHHHHHHHH
Q ss_conf             29--999999999999999
Q gi|254780602|r  379 AV--SDAILEEACVRIKRF  395 (400)
Q Consensus       379 ~~--~~e~l~~al~rl~~~  395 (400)
                      +.  +++.++.-++.|.+.
T Consensus       503 TP~HT~~mm~~lv~~l~~v  521 (570)
T KOG1360         503 TPHHTPQMMNILVNALLDV  521 (570)
T ss_pred             CCCCCHHHHHHHHHHHHHH
T ss_conf             9988789999999999999


No 319
>pfam00282 Pyridoxal_deC Pyridoxal-dependent decarboxylase conserved domain.
Probab=98.46  E-value=9e-08  Score=67.39  Aligned_cols=233  Identities=15%  Similarity=0.135  Sum_probs=131.0

Q ss_pred             CCCHHHHHHHHHHHHHHCCCCEEECCCCCCCC-------CCCHH-HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             97589999999999998699726656589749-------88999-99999999838875699877898999999998642
Q gi|254780602|r   12 QPSATLVAAQRVRDLRSKGIDVLCLTAGEPDF-------DMPEN-VKYAVVRAMERGETKYTAVAGISPLREAIVEKFRR   83 (400)
Q Consensus        12 ~~s~~~~~~~~~~~~~~~g~~ii~l~~G~p~~-------~~p~~-i~~a~~~al~~~~~~Y~~~~G~~~lR~aia~~~~~   83 (400)
                      +|.+.-++.+..++....|.  .  ....|.|       ++|+. +-+-+..+++.....|..++..-++-+.+.+|+.+
T Consensus        15 ~~~~~~~vl~~~~~~i~p~~--~--~~~hP~f~g~~~~~~~~~~~~~d~la~~~n~n~~~~~~sPa~t~lE~~vi~wl~~   90 (370)
T pfam00282        15 IPEPLLDILGDIRKNIMPGV--T--TWHSPNFHAYFPAGNSYPSLLGDMLSDAINCNGFTWESSPACTELENVVMDWLAK   90 (370)
T ss_pred             CCCCHHHHHHHHHHHHHCCC--C--CCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCCHHCCHHHHHHHHHHHHHHHH
T ss_conf             99899999999998871678--8--8989990486578888899999999998563666620082689999999999999


Q ss_pred             HCCCCCC-----CCCCCCCCCCCCCCCCCCCCCCC--------CC---CC-CC-CCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             1013333-----22332334543333222222233--------22---32-22-23333232222222222222222222
Q gi|254780602|r   84 DNDLHYT-----SDQIIVGTGAKHVIFNALMATVN--------MG---DE-VL-IPRPYWVSYPDMVALCGGIPVFVDTQ  145 (400)
Q Consensus        84 ~~g~~~~-----~e~I~it~G~~~~l~~~~~~~~~--------~G---d~-Vl-v~~P~y~~y~~~~~~~g~~~~~v~~~  145 (400)
                      ..|++-.     ...=++|+|++.+...++.+--+        .|   ++ |+ +.+-+-......+..+|..++.||++
T Consensus        91 l~g~p~~~~~~~~~~G~~tsGgs~anl~al~~AR~~~~~~~~~~g~~~~~~vi~~S~~aH~Sv~Kaa~~lGlg~~~V~~d  170 (370)
T pfam00282        91 MLGLPKEFLGSGQGGGVLQGGSSESNLLALLAARTKWIRRMKAAGKPLGKLVAYTSDQAHSSIEKAALIAGVELREIPTD  170 (370)
T ss_pred             HHCCCHHHCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHCCCCCEEEEEC
T ss_conf             96686444168888648736478999999999999999987641798687499976632799999999749983695368


Q ss_pred             CCCCCCCHHHHHHCCCCCCC---C--C-EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCC
Q ss_conf             22322210333100012212---2--0-1211354210000123333211122333332011101221100000122332
Q gi|254780602|r  146 QDDNFQVSPEKLEQAITPKT---K--W-LFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSN  219 (400)
Q Consensus       146 ~~~~~~~d~~~l~~~i~~~~---k--~-i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s  219 (400)
                      ++  +.+|+++|+++|.+..   .  + |+.+-..-.||.+   +.+++|.++| +++++|+-+|.+|....+-..++.+
T Consensus       171 ~~--~~m~~~~L~~~i~~~~~~g~~p~~VvataGTT~tGai---D~l~~i~~i~-~~~~lWlHVDaA~GG~~~l~~~~r~  244 (370)
T pfam00282       171 EN--GKMRGMDLEKAIEEDKENGLIPFFVCATLGTTGSGAF---DPLQELGDIC-NKYDLWLHVDAAYAGSAFICPEFRH  244 (370)
T ss_pred             CC--CCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCC---CCHHHHHHHH-HHCCCEEEEEHHHHHHHHHCHHHHH
T ss_conf             98--8829999999999998679974499986377177134---7899999999-9839808842333347882985577


Q ss_pred             CCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCC-HHHHH
Q ss_conf             2211123332257414654432234454442211-01226
Q gi|254780602|r  220 IVNVEPSLYERTLVVNGVSKAYAMTGLRIGYAAG-ALSLI  258 (400)
Q Consensus       220 ~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~v~-~~~li  258 (400)
                      ...-.+.  -..|++. +.|.+.+| .-+|++.. +++.+
T Consensus       245 ~~~gie~--aDSi~~d-~HK~l~~P-~~~s~~l~rd~~~l  280 (370)
T pfam00282       245 WLFGIER--ADSFSFN-PHKWMLVL-LDCSALWVRDKGAL  280 (370)
T ss_pred             HHCCCCC--CCEEEEC-CHHCCCCC-CCEEEEEEECHHHH
T ss_conf             7569877--8579778-05501878-87589999487998


No 320
>COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance [Inorganic ion transport and metabolism]
Probab=98.46  E-value=1.8e-07  Score=65.51  Aligned_cols=194  Identities=21%  Similarity=0.276  Sum_probs=117.3

Q ss_pred             HHHHHHHHH-HH----CCCCCCCC-CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             999999999-83----88756998-7789899999999864210133332233233454333322222223322322223
Q gi|254780602|r   48 NVKYAVVRA-ME----RGETKYTA-VAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFNALMATVNMGDEVLIP  121 (400)
Q Consensus        48 ~i~~a~~~a-l~----~~~~~Y~~-~~G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l~~~~~~~~~~Gd~Vlv~  121 (400)
                      .|++|.++. +.    .+.+||+. .-|...|-.    -|.+-+|.+-..-+.-+.+| +++|..++..+++|||+.+.-
T Consensus        39 kVL~AF~~~rvs~~hf~~stGYGydD~GRdtLe~----vyA~vf~aE~a~VRpq~isG-THAI~~aLfg~LRpgDell~i  113 (416)
T COG4100          39 KVLEAFRHHRVSESHFTGSTGYGYDDLGRDTLER----VYAQVFGAEAALVRPQIISG-THAIACALFGILRPGDELLYI  113 (416)
T ss_pred             HHHHHHHHCCCCHHCCCCCCCCCCCCCCHHHHHH----HHHHHHCCCCCEEEEEEECC-HHHHHHHHHHCCCCCCEEEEE
T ss_conf             9999998543530025788877765322667999----99998554100231055236-029999998426888747775


Q ss_pred             --CCCCCCCCCCC----------CCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEECCCCCCCCCC----CCCCC
Q ss_conf             --33323222222----------222222222222222322210333100012212201211354210000----12333
Q gi|254780602|r  122 --RPYWVSYPDMV----------ALCGGIPVFVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVV----YSQNR  185 (400)
Q Consensus       122 --~P~y~~y~~~~----------~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~k~i~l~nP~NPTG~v----~s~~~  185 (400)
                        .| |...+..+          .-.|..-..+|+..++  .+|.+.++.+++++||+|.+-   --+|..    ++-++
T Consensus       114 ~G~P-YDTLeevIG~rg~~~gSL~dfgi~Y~~v~Lt~~g--kiD~~~v~~~i~~~tkli~IQ---RS~GY~~RpS~~I~e  187 (416)
T COG4100         114 TGSP-YDTLEEVIGLRGEGQGSLKDFGIKYKAVPLTADG--KIDIQAVKTAISDRTKLIGIQ---RSKGYAWRPSLSIAE  187 (416)
T ss_pred             CCCC-CHHHHHHHCCCCCCCCCHHHHCCCEEECCCCCCC--CCCHHHHHHHCCCCCEEEEEE---ECCCCCCCCCCCHHH
T ss_conf             2886-0568987562777854278738550021356688--233899987508552599997---325767788642999


Q ss_pred             CCCCCCCCC-CCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCC--CCCCCCCHHHHHHHHH
Q ss_conf             321112233-3332011101221100000122332221112333225741465443223445--4442211012268753
Q gi|254780602|r  186 LRALADVLV-RNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTGL--RIGYAAGALSLIKSMI  262 (400)
Q Consensus       186 l~~i~~~~a-~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~~~G~--RiG~~v~~~~li~~l~  262 (400)
                      +++++++.. .+.++++++|.+|.+|+- ..+++....        -+.-+|+=|+-+ .|+  --||+++.++++++..
T Consensus       188 I~~~i~~vk~inpn~ivFVDNCYGEFvE-~~EPt~vGa--------DliAGSLIKNpG-GgiaktGGYiaGk~~~ve~~~  257 (416)
T COG4100         188 IEEMITFVKEINPNVIVFVDNCYGEFVE-EKEPTHVGA--------DLIAGSLIKNPG-GGIAKTGGYIAGKAELVEAAA  257 (416)
T ss_pred             HHHHHHHHHHCCCCEEEEEECCCHHHHH-CCCCCCCCH--------HHHCCCEEECCC-CCEEECCCEEECHHHHHHHHC
T ss_conf             9999999984499779998056365541-148630053--------342032132799-866511645524688987641


No 321
>TIGR01788 Glu-decarb-GAD glutamate decarboxylase; InterPro: IPR010107   This entry represents Glutamate decarboxylase (gad;) it is a pyridoxal 5'-phosphate (PLP)-dependent enzyme, which catalyses the irreversible alpha-decarboxylation of L-glutamate to gamma-aminobutyrate (GABA). This enzyme is widely distributed amongst eukaryotes and prokaryotes, but its function varies in different organisms .   Gad has a crucial role in the vertebrate central nervous system where it is responsible for the synthesis of GABA, the major inhibitory neurotransmitter. In the majority of vertebrates Gad occurs in two isoforms, GAD65 and GAD67, both active at neutral pH . Gad isoforms (GadA and GadB) have also been reported in some bacterial species, including the Gram-negative bacterium  and Gram-positive bacterium .   A unique feature of plant and yeast Gad is the presence of a calmodulin (CaM)-binding domain in the C-terminal region. In Saccharomyces cerevisiae, Gad expression is required for normal oxidative stress tolerance . In plants, Gad is thought to be a stress-adapter chaperonin sensing Ca2+ signals.; GO: 0004351 glutamate decarboxylase activity, 0030170 pyridoxal phosphate binding, 0006536 glutamate metabolic process.
Probab=98.46  E-value=7.7e-08  Score=67.82  Aligned_cols=359  Identities=15%  Similarity=0.147  Sum_probs=190.9

Q ss_pred             HHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCC---CCCCCCCCCCHHHHHHHHHHHHHHCCCC-CCCCC----CC-
Q ss_conf             999869972665658974988999999999998388---7569987789899999999864210133-33223----32-
Q gi|254780602|r   25 DLRSKGIDVLCLTAGEPDFDMPENVKYAVVRAMERG---ETKYTAVAGISPLREAIVEKFRRDNDLH-YTSDQ----II-   95 (400)
Q Consensus        25 ~~~~~g~~ii~l~~G~p~~~~p~~i~~a~~~al~~~---~~~Y~~~~G~~~lR~aia~~~~~~~g~~-~~~e~----I~-   95 (400)
                      |+-=.|..-+||+.=--.+ .-|++.+-|.++++..   .--||-+.-..+.|  ...-+.+.+..+ +..++    |= 
T Consensus        42 EL~LDGNprLNLAsFV~Tw-me~EA~KLm~e~~~KN~ID~dEYPqTar~i~~R--CVnM~a~LfhAp~~~D~~~~savGt  118 (493)
T TIGR01788        42 ELSLDGNPRLNLASFVTTW-MEPEAEKLMDETLNKNMIDKDEYPQTAREIENR--CVNMLADLFHAPALKDEEAASAVGT  118 (493)
T ss_pred             HCCCCCCHHHHHHCCCCCC-CCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHC--CEEHHHHHHCCCCCCCCCCCCCEEC
T ss_conf             4045776222321324787-776789999725577701100165448988504--3012344114787778775664351


Q ss_pred             CCCCCCCCCCCCCCCC-----------CCCCC--C--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCC
Q ss_conf             3345433332222222-----------33223--2--2223333232222222222222222222223222103331000
Q gi|254780602|r   96 VGTGAKHVIFNALMAT-----------VNMGD--E--VLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQA  160 (400)
Q Consensus        96 it~G~~~~l~~~~~~~-----------~~~Gd--~--Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~  160 (400)
                      =|.||+||+.+..+|+           ..|.|  +  +|+..=.=.+++..++...+.++.||++.-+++.+|+|++-+.
T Consensus       119 sTiGSSEAiMLGGlAmK~rWr~R~~~~Gk~~d~kKPNlv~g~~vQVCWEKF~RYfdVE~R~VP~~~r~r~~i~Pe~~~~~  198 (493)
T TIGR01788       119 STIGSSEAIMLGGLAMKWRWRKRMKAAGKPADAKKPNLVMGSNVQVCWEKFARYFDVELREVPMDKRDRYVIDPEEVVDL  198 (493)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCEEEECCCEEEEEEEEEEEECCCCCCCCCCHHHHHHH
T ss_conf             77325899998777757999999986388878788723607986164212203355401367207777601188999986


Q ss_pred             CCCCCCCEEECCCCCCCCCCCCC--CCCCCCCCCCC----CC-----CCCEEECCCCCCCCCCC---CCCCCCCCCCCCC
Q ss_conf             12212201211354210000123--33321112233----33-----32011101221100000---1223322211123
Q gi|254780602|r  161 ITPKTKWLFLNSPSNPSGVVYSQ--NRLRALADVLV----RN-----PHVHIISDDIYEHIVYR---NCQFSNIVNVEPS  226 (400)
Q Consensus       161 i~~~~k~i~l~nP~NPTG~v~s~--~~l~~i~~~~a----~~-----~~i~ii~De~Y~~l~~~---~~~~~s~~~~~~~  226 (400)
                      |+|+|=.|+.+     .|++|+-  |.+++|.+.+.    ++     .|+.|-.|.|=+.|+-.   +++|   ..+.|+
T Consensus       199 vDENTIGV~~I-----LG~TyTG~yE~v~~lnD~L~~~~~~~PDWsg~d~PiHvDAASGGFi~PFGfekeh---mk~~PD  270 (493)
T TIGR01788       199 VDENTIGVVAI-----LGTTYTGEYEDVKALNDLLEELNAKTPDWSGWDIPIHVDAASGGFIAPFGFEKEH---MKVEPD  270 (493)
T ss_pred             HCCCCCEEEEE-----CCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCC---EEECCC
T ss_conf             07675248887-----4723258708889999999997427887477876647744678811376635341---154571


Q ss_pred             C-----CCEEEEEC-CCCC-CCCCCCCCCCCCCC------HHHHHHHHHHHC---CCCCCCCCCCCCCCCCCCC---CCC
Q ss_conf             3-----32257414-6544-32234454442211------012268753100---1222332222222222223---467
Q gi|254780602|r  227 L-----YERTLVVN-GVSK-AYAMTGLRIGYAAG------ALSLIKSMIVLQ---GQQTSGACSIAQWAAVEAL---NGP  287 (400)
Q Consensus       227 ~-----~~~~i~~~-S~SK-~~~~~G~RiG~~v~------~~~li~~l~~~~---~~~~~~~~~~~q~a~~~~l---~~~  287 (400)
                      +     -+||+.|+ |-.| .+.-||  |||++=      |+||+=+++-+-   ...+.+=|.++-.++.+++   +-+
T Consensus       271 l~WDFRLprV~SINvSGHKYGLvYPG--vGWViWRd~e~LPeELiF~vnYLGg~~~tFtLNFSrp~~qViaQYYnFlRLG  348 (493)
T TIGR01788       271 LEWDFRLPRVKSINVSGHKYGLVYPG--VGWVIWRDEEALPEELIFHVNYLGGDEPTFTLNFSRPANQVIAQYYNFLRLG  348 (493)
T ss_pred             EEECCCCCCEEEECCCCCCCCCCCCC--CCEEEECCCCCCHHHCEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCC
T ss_conf             26566178246870465512464766--1268875811370131110110266565430135576231136446688504


Q ss_pred             CCCCCCCCCCCCCCCCCHHHHHHCC---CC-CEEEECCC--------------CEEEE-----EECCCCCCCCCCCCC--
Q ss_conf             6432222221100000002455304---77-60330274--------------08998-----626410233211332--
Q gi|254780602|r  288 QDFVVNNRKIFEYRRDLCVAQLQGV---PG-IRYMIPDG--------------AFYLY-----PSCQDLIGKKSPSGD--  342 (400)
Q Consensus       288 ~~~~~~~~~~~~~~r~~~~~~L~~~---~g-~~~~~p~g--------------~~y~~-----~~~~~~~~~~~~~~~--  342 (400)
                      .+-...+.+......+.|.+.|.++   || +.+.. +|              -|.=.     -.+|-...+......  
T Consensus       349 ~~GYr~i~q~~~~vA~~La~~~~~~sklPG~Fe~~s-~g~~sienDsaPksvkDYWehPqaY~~~~P~VaFrLKd~~~~~  427 (493)
T TIGR01788       349 REGYRKIMQNLLDVAQYLAEEIAKLSKLPGPFEILS-DGRESIENDSAPKSVKDYWEHPQAYKSGIPLVAFRLKDDADEE  427 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEE-CCCCCCCCCCCCCCHHHHHCCCCCCCCCCCEEEEECCCCCCCC
T ss_conf             013489999899999999999998606998458871-7875433456774012331364122789777988536877888


Q ss_pred             -CCCCHHHHHHHHHHHCCEEEECCCCCCCC-C---E---EEEEEE--CCHHHHHHHHHHHHHHHHHC
Q ss_conf             -24898999999998739799835022899-7---2---899962--99999999999999999860
Q gi|254780602|r  343 -VIRTDLDFVNGLLEIEKVAVVQGSSFGHG-P---S---IRISYA--VSDAILEEACVRIKRFCHSL  399 (400)
Q Consensus       343 -~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~-~---~---iRis~~--~~~e~l~~al~rl~~~l~~l  399 (400)
                       ..-+-.+++++| +..| -++|......+ .   .   .||-+-  -+.+--+.-++=+++.++.|
T Consensus       428 Y~~Yt~~~ls~~L-R~rG-WiVPAYtlP~~~~GsDd~~v~RiVvRe~~~~d~A~~Li~D~~~~~~~L  492 (493)
T TIGR01788       428 YTGYTLYDLSHKL-RERG-WIVPAYTLPKNAEGSDDIEVLRIVVREDFSRDLAELLIEDLEKALAYL  492 (493)
T ss_pred             CCCCCHHHHHHHH-HHCC-CCCCCCCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             8767899999985-0347-313478884335677872799998725898406999999999999971


No 322
>PRK12566 glycine dehydrogenase; Provisional
Probab=98.43  E-value=5.8e-07  Score=62.47  Aligned_cols=208  Identities=15%  Similarity=0.205  Sum_probs=116.4

Q ss_pred             CCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCC---CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC--
Q ss_conf             972665658974988999999999998388756998---778989999999986421013333223323345433332--
Q gi|254780602|r   31 IDVLCLTAGEPDFDMPENVKYAVVRAMERGETKYTA---VAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIF--  105 (400)
Q Consensus        31 ~~ii~l~~G~p~~~~p~~i~~a~~~al~~~~~~Y~~---~~G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l~--  105 (400)
                      +-+|+|+.=-|.+.+--++.-.--..+ ...+-|.|   .+|..++-..+.+|+..-.|.+  .-.+-..+|++.-+.  
T Consensus       500 ~sMIPLGSCTMKLNAtsEM~PiswPeF-a~iHPfaP~~Q~~Gy~~l~~~L~~~L~~iTG~~--~vslQPnaGaqGE~aGl  576 (954)
T PRK12566        500 QAMIPLGSCTMKLNATSEMIPITWPEF-AQLHPFAPREQAEGYKAMIDELEAWLCAITGFD--AICMQPNSGAQGEYAGL  576 (954)
T ss_pred             HCCCCCCCEEEECCCHHHHHHHCCHHH-HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC--CEECCCCCCCCHHHHHH
T ss_conf             325106620230382565211063867-437999997899999999999999999866856--04257787751068999


Q ss_pred             CCCCCCC-CCC----CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCC---CCCCCEEECCCCCCC
Q ss_conf             2222223-322----32222333323222222222222222222222322210333100012---212201211354210
Q gi|254780602|r  106 NALMATV-NMG----DEVLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQAIT---PKTKWLFLNSPSNPS  177 (400)
Q Consensus       106 ~~~~~~~-~~G----d~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~---~~~k~i~l~nP~NPT  177 (400)
                      ++++... ..|    +.+|+|+-.-......+.++|.+++.|+++++++  +|+++|++++.   ++..++++++|+  |
T Consensus       577 ~~ir~yh~~~g~~~R~icLIP~SAHGTNPASA~maG~~Vv~v~~~~~G~--iD~~dL~~k~~~~~~~laa~MiTyPs--T  652 (954)
T PRK12566        577 LAIRRYHESRGQSQRDICLIPASAHGTNPASAQMAGMRVVIVECDNDGN--VDLDDLKAKAAEAGDRLSCLMITYPS--T  652 (954)
T ss_pred             HHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHCCCEEEEEECCCCCC--CCHHHHHHHHHHHHHHHHHHHCCCCC--C
T ss_conf             9999999974998883799678988889778976696689960189998--48999999999726654434300676--4


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCC-CCC-CCEEEEECCCCCCCCCC----CCCCCCC
Q ss_conf             00012333321112233333201110122110000012233222111-233-32257414654432234----4544422
Q gi|254780602|r  178 GVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVE-PSL-YERTLVVNGVSKAYAMT----GLRIGYA  251 (400)
Q Consensus       178 G~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~-~~~-~~~~i~~~S~SK~~~~~----G~RiG~~  251 (400)
                      =-++ .+.+++||++. .+++-.+-.         ||.....+..+. |+. .-.+.+++ +.|+|+.|    |--+|=+
T Consensus       653 ~Gvf-E~~i~ei~~~v-H~~GGqvY~---------DGANmNA~vG~~~Pg~~G~Dv~HlN-LHKTF~iPHGGGGPG~GPi  720 (954)
T PRK12566        653 HGVY-EEGIREICEVV-HQHGGQVYM---------DGANLNAQVGLARPADIGADVSHMN-LHKTFCIPHGGGGPGMGPI  720 (954)
T ss_pred             CCCH-HHHHHHHHHHH-HHHCCEEEE---------CCCCHHHHHCCCCCCCCCCCCEEEE-CHHCCCCCCCCCCCCCCCE
T ss_conf             5122-55599999999-970988985---------4632232414457200367602320-0220368878888987766


Q ss_pred             CCHHHH
Q ss_conf             110122
Q gi|254780602|r  252 AGALSL  257 (400)
Q Consensus       252 v~~~~l  257 (400)
                      ...+.+
T Consensus       721 ~v~~hL  726 (954)
T PRK12566        721 GVRAHL  726 (954)
T ss_pred             EEHHHC
T ss_conf             664231


No 323
>KOG1404 consensus
Probab=98.39  E-value=2e-06  Score=59.26  Aligned_cols=339  Identities=16%  Similarity=0.135  Sum_probs=160.3

Q ss_pred             CCCCEEECCCCCCC--C-CCCHHHHHHHHHHHHCC---CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf             69972665658974--9-88999999999998388---756998778989999999986421013333223323345433
Q gi|254780602|r   29 KGIDVLCLTAGEPD--F-DMPENVKYAVVRAMERG---ETKYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKH  102 (400)
Q Consensus        29 ~g~~ii~l~~G~p~--~-~~p~~i~~a~~~al~~~---~~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~  102 (400)
                      .|+.++|+..|-..  + --.|.|.+++.+.+..-   ..+|...+ ..+|-++++..+-      -+-..++++|++++
T Consensus        48 ~G~ryLD~f~Gi~tvslGHchP~v~~a~~kQl~~l~H~t~~~~~~p-i~~~Ae~L~s~~P------~~l~~vfF~nsGsE  120 (442)
T KOG1404          48 EGRRYLDAFGGIVTVSLGHCHPDVVAAAVKQLKKLYHTTSGYLNPP-IHDLAEALVSKLP------GDLKVVFFVNSGSE  120 (442)
T ss_pred             CCCEEEHHHCCEEEEECCCCCHHHHHHHHHHHHHHEEEECCCCCCC-HHHHHHHHHHHCC------CCCEEEEEECCCCH
T ss_conf             8865002208748997378884789999986453287301214870-8999999998688------77128999558745


Q ss_pred             CCCCCCCCC---CCCCCCCCCCCCCCCCCCC-CCCCCCCCCCC--CCCCC------------------------CCCCCC
Q ss_conf             332222222---3322322223333232222-22222222222--22222------------------------232221
Q gi|254780602|r  103 VIFNALMAT---VNMGDEVLIPRPYWVSYPD-MVALCGGIPVF--VDTQQ------------------------DDNFQV  152 (400)
Q Consensus       103 ~l~~~~~~~---~~~Gd~Vlv~~P~y~~y~~-~~~~~g~~~~~--v~~~~------------------------~~~~~~  152 (400)
                      |..+++...   .+.- .+|-..-+|-.-.. .+.+.|..+..  +|...                        ...+.-
T Consensus       121 ANelal~mar~Yt~~~-diIa~r~~YHG~t~~t~glt~~~~~k~~~~~~~~~~~~~~~Pdp~r~~~~~~~~~e~~d~~a~  199 (442)
T KOG1404         121 ANELALKMARLYTGNL-DIIARRNSYHGNTLYTLGLTGLSPWKQNFPGVASGVHHTMNPDPYRGIFGGSNEEEASDRYAK  199 (442)
T ss_pred             HHHHHHHHHHHHCCCC-EEEEEECCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf             8899999999862971-588750553677355302446776455678887765126899831156799732456888888


Q ss_pred             HHHHHHCCCCCCCCCEEECCC-CCCCCCC-CCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf             033310001221220121135-4210000-12333321112233333201110122110000012233222111233322
Q gi|254780602|r  153 SPEKLEQAITPKTKWLFLNSP-SNPSGVV-YSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYER  230 (400)
Q Consensus       153 d~~~l~~~i~~~~k~i~l~nP-~NPTG~v-~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~  230 (400)
                      +++++-..-.+.+-+-+++-| +--.|.+ +++--+++..+.| |+++.+.|.||+-..|.-.|    ++++.+.  .+.
T Consensus       200 ~l~d~i~~~~~~~vAafiaEtIqGvgG~v~~p~GYlka~~~~v-~k~Ggl~IaDEVqtGfGRtG----~~wgfe~--h~v  272 (442)
T KOG1404         200 ELEDLILYDGPETVAAFIAETIQGVGGIVELPPGYLKAAYKVV-RKRGGLFIADEVQTGFGRTG----HMWGFES--HGV  272 (442)
T ss_pred             HHHHHHHHCCCCCEEEEEEEHHCCCCCCCCCCCHHHHHHHHHH-HHCCCEEEEHHHHHCCCCCC----CCCCCCC--CCC
T ss_conf             7778887358775147875300167753138811899999999-97597898543443645552----5101001--687


Q ss_pred             EEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHC-CCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCHHHH
Q ss_conf             57414654432234454442211012268753100-1222332222222222223467-643222222110000000245
Q gi|254780602|r  231 TLVVNGVSKAYAMTGLRIGYAAGALSLIKSMIVLQ-GQQTSGACSIAQWAAVEALNGP-QDFVVNNRKIFEYRRDLCVAQ  308 (400)
Q Consensus       231 ~i~~~S~SK~~~~~G~RiG~~v~~~~li~~l~~~~-~~~~~~~~~~~q~a~~~~l~~~-~~~~~~~~~~~~~~r~~~~~~  308 (400)
                      +=-+-|++|..+ .|+-+|.++..+++.+-+.+.. -..+.+.+++.-.++.+.|+-- ++.+.+..   .+.-.++.+.
T Consensus       273 ~PDIvTmAKgiG-nG~Pl~AVvtt~EIa~v~~~~~~~fnTyggnP~a~avg~aVL~Vikee~LqE~a---a~vG~yl~~~  348 (442)
T KOG1404         273 VPDIVTMAKGIG-NGFPLGAVVTTPEIADVLNQKSSHFNTYGGNPVACAVGLAVLKVIKEENLQENA---AEVGSYLLEK  348 (442)
T ss_pred             CCCHHHHHHHCC-CCCCCEEEECCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
T ss_conf             720999986524-887002563278999999852135203378825678889999999887678889---9999999999


Q ss_pred             HHCC----CCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCCCCEEEEE--EECCH
Q ss_conf             5304----77603302740899862641023321133224898999999998739799835022899728999--62999
Q gi|254780602|r  309 LQGV----PGIRYMIPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGHGPSIRIS--YAVSD  382 (400)
Q Consensus       309 L~~~----~g~~~~~p~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~iRis--~~~~~  382 (400)
                      |.++    +-+-=.+.. |.++=+.+-+  .+..+..-...-...+.+. .+++||++--|.-+|.  .+||+  ++.+.
T Consensus       349 l~~l~d~h~iIGdVRG~-GLm~GvE~V~--dk~~~~pp~~~~~~~i~~~-cke~Gvlvg~g~i~G~--vfriaPPlciT~  422 (442)
T KOG1404         349 LAALKDKHPIIGDVRGR-GLMLGVELVS--DKSEPKPPATAEGAVIGEQ-CKELGVLVGKGGIHGN--VFRIAPPLCITK  422 (442)
T ss_pred             HHHHHHCCCCEEECCCC-EEEEEEEEEC--CCCCCCCCCHHHHHHHHHH-HHHHCEEEECCCCCCE--EEEECCCEECCH
T ss_conf             99874148735521354-1488888722--6677889406778899899-8974856410423231--798369854348


Q ss_pred             HHHHHHHHHH
Q ss_conf             9999999999
Q gi|254780602|r  383 AILEEACVRI  392 (400)
Q Consensus       383 e~l~~al~rl  392 (400)
                      |+++-+++-.
T Consensus       423 edi~f~~~~~  432 (442)
T KOG1404         423 EDIDFAVEYF  432 (442)
T ss_pred             HHHHHHHHHH
T ss_conf             9988999999


No 324
>PRK05367 glycine dehydrogenase; Provisional
Probab=98.33  E-value=1e-06  Score=60.93  Aligned_cols=194  Identities=14%  Similarity=0.232  Sum_probs=113.0

Q ss_pred             CCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCC---CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC--
Q ss_conf             972665658974988999999999998388756998---778989999999986421013333223323345433332--
Q gi|254780602|r   31 IDVLCLTAGEPDFDMPENVKYAVVRAMERGETKYTA---VAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIF--  105 (400)
Q Consensus        31 ~~ii~l~~G~p~~~~p~~i~~a~~~al~~~~~~Y~~---~~G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l~--  105 (400)
                      +-+|+|+.=-|.+.+.-++.-.--..+ ...+-|.|   .+|..++-..+.+|+..-.|.+  .=.+-..+|++. -+  
T Consensus       499 ~sMIPLGSCTMKLNAaaEM~PvswPeF-a~iHPf~P~~q~~Gy~~~~~~l~~~L~~itG~~--~vSlQPnaGaqG-E~aG  574 (955)
T PRK05367        499 RSMIPLGSCTMKLNAAAEMIPVTWPEF-ANLHPFAPAEQAAGYRELIADLEAWLAEITGYD--AVSLQPNAGSQG-EYAG  574 (955)
T ss_pred             CCCEECCCCEECCCCHHHCCCCCCHHH-HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC--EEECCCCCCHHH-HHHH
T ss_conf             053025642013561432256450767-516999986888999999999999999976888--674178865089-9999


Q ss_pred             -CCCCCCC-CCC----CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCC---CCCCCEEECCCCCC
Q ss_conf             -2222223-322----32222333323222222222222222222222322210333100012---21220121135421
Q gi|254780602|r  106 -NALMATV-NMG----DEVLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQAIT---PKTKWLFLNSPSNP  176 (400)
Q Consensus       106 -~~~~~~~-~~G----d~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~---~~~k~i~l~nP~NP  176 (400)
                       +++++.. ..|    +.+|+|+-.-......+.++|.+++.++++++++  +|+++|++++.   ++..++++++|+ -
T Consensus       575 ll~Ir~Yh~~~g~~~R~i~LiP~SAHGTNpASA~maG~kVv~v~~d~~G~--iD~~dL~~k~~~~~~~laa~MiTyPs-T  651 (955)
T PRK05367        575 LLAIRAYHESRGEGHRNICLIPSSAHGTNPASAQMAGMKVVVVACDENGN--IDLDDLRAKAEQHADNLAALMITYPS-T  651 (955)
T ss_pred             HHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHCCCEEEEEEECCCCC--CCHHHHHHHHHHHHHHHHHHHHCCCC-C
T ss_conf             99999999975987786799556678888666876497689973089999--69999999999865776788744776-4


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCC-CC-CCCEEEEECCCCCCCCCC
Q ss_conf             000012333321112233333201110122110000012233222111-23-332257414654432234
Q gi|254780602|r  177 SGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVE-PS-LYERTLVVNGVSKAYAMT  244 (400)
Q Consensus       177 TG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~-~~-~~~~~i~~~S~SK~~~~~  244 (400)
                      .| ++ .+.++++|++. .+++-.+-.         ||.....+..+. |+ +.-.+.+++ +.|+|+.|
T Consensus       652 ~G-vF-E~~I~ei~~~v-H~~GGqvY~---------DGANmNA~vG~~~Pg~~G~Dv~HlN-LHKTF~iP  708 (955)
T PRK05367        652 HG-VF-EETIREICEIV-HDHGGQVYL---------DGANMNAQVGLTRPGDIGADVSHLN-LHKTFCIP  708 (955)
T ss_pred             CC-CC-HHHHHHHHHHH-HHCCCEEEE---------CCCCCCCEECCCCHHHCCCCHHEEC-CCCCCCCC
T ss_conf             56-60-67799999999-854998975---------4644003023025876472031001-33221246


No 325
>pfam02347 GDC-P Glycine cleavage system P-protein. This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is:- Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2
Probab=98.28  E-value=1e-05  Score=54.88  Aligned_cols=274  Identities=12%  Similarity=0.075  Sum_probs=136.8

Q ss_pred             HHHHHHHHHHHHHCCCCEEEC-CCCCCCCCCCHHHHHHHHHHHHCCC--CCCCC-----CCCCHHHHHHHHHHHHHHCCC
Q ss_conf             999999999999869972665-6589749889999999999983887--56998-----778989999999986421013
Q gi|254780602|r   16 TLVAAQRVRDLRSKGIDVLCL-TAGEPDFDMPENVKYAVVRAMERGE--TKYTA-----VAGISPLREAIVEKFRRDNDL   87 (400)
Q Consensus        16 ~~~~~~~~~~~~~~g~~ii~l-~~G~p~~~~p~~i~~a~~~al~~~~--~~Y~~-----~~G~~~lR~aia~~~~~~~g~   87 (400)
                      =.++....+++.++++...+| +.|--+.-+|+.|.+.+.   .++.  +.|+|     +||..+.-=....-.....|+
T Consensus        49 E~e~~~~l~~la~kN~~~~sfiG~G~y~h~vP~vi~~~i~---~r~efyTaYTPYQpEiSQG~LqalfefQtmi~eLTGm  125 (429)
T pfam02347        49 EYEMLAELEAIASKNKIYKSFIGMGYYDTIIPAVILRNIL---ENPEWYTQYTPYQPEISQGRLEALLNFQTMVCDLTGL  125 (429)
T ss_pred             HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHC---CCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             9999999999997589766315787779765815646540---4766430369998154437999999999999998588


Q ss_pred             CCCCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----CCCCCCCCCCCCCCCCCCCHHHHHHCC
Q ss_conf             33322332334543---33322222223322322223333232222222----222222222222223222103331000
Q gi|254780602|r   88 HYTSDQIIVGTGAK---HVIFNALMATVNMGDEVLIPRPYWVSYPDMVA----LCGGIPVFVDTQQDDNFQVSPEKLEQA  160 (400)
Q Consensus        88 ~~~~e~I~it~G~~---~~l~~~~~~~~~~Gd~Vlv~~P~y~~y~~~~~----~~g~~~~~v~~~~~~~~~~d~~~l~~~  160 (400)
                      ++.--.  +-.|++   +|+.++.+..-+..++|+|+.-.+|.+...++    ..|.+++.+++.+.          ...
T Consensus       126 dvaNAS--lyD~aTA~aEA~~ma~r~~k~~~~~vlv~~~~hP~~~~Vl~T~~~~~~i~i~~~~~~~~----------~~~  193 (429)
T pfam02347       126 DVANAS--LLDEGTAAAEAMALAARISKGKKKKFVVDKDCHPQTLDVLRTRAKGFGIEIVEVDLTEE----------GFS  193 (429)
T ss_pred             CCCCCC--CCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCC----------CCC
T ss_conf             756876--66678899999999876515788779982887831899999754227957999672001----------455


Q ss_pred             CCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCC
Q ss_conf             12212201211354210000123333211122333332011101221100000122332221112333225741465443
Q gi|254780602|r  161 ITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKA  240 (400)
Q Consensus       161 i~~~~k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~  240 (400)
                      ..+++-++++-+|| -.|.+-   ++.++.+++ +..+.++|+- + ..+...--+       .|+-+.--|++++. ..
T Consensus       194 ~~~~~a~v~~q~Pn-~~G~ie---d~~~i~~~~-h~~gal~iv~-~-dplsL~ll~-------~Pg~~GaDI~vG~~-Q~  258 (429)
T pfam02347       194 DEGDVFGVLVQYPN-TEGRIE---DYKELIEIA-HQHGSLVVVA-A-DLLALTILK-------PPGEFGADIVVGSA-QR  258 (429)
T ss_pred             CCCCEEEEEEECCC-CCCCEE---CCHHHHHHH-HHCCCEEEEE-E-CHHHHCCCC-------CCCCCCCCEEEECC-CC
T ss_conf             55476899993799-983172---349999998-6459669998-0-779960768-------97656633797257-65


Q ss_pred             CCC----CCCCCCCCCCHHHHHHHHHHH----------------------------CCCCCCCCCCCC-CC-CCCCCCCC
Q ss_conf             223----445444221101226875310----------------------------012223322222-22-22222346
Q gi|254780602|r  241 YAM----TGLRIGYAAGALSLIKSMIVL----------------------------QGQQTSGACSIA-QW-AAVEALNG  286 (400)
Q Consensus       241 ~~~----~G~RiG~~v~~~~li~~l~~~----------------------------~~~~~~~~~~~~-q~-a~~~~l~~  286 (400)
                      ||+    .|--.||+.+.+++++.+-..                            +....+|.+.-. .. ++..+.-.
T Consensus       259 lGipm~fGGP~~gf~a~~~~~~R~~PGRivG~t~D~~G~~~~~ltLqtREQHIrReKAtSNICTnqaL~A~~a~~Y~~~~  338 (429)
T pfam02347       259 FGVPMGYGGPHAGFFAVKEELKRKMPGRIVGVSKDANGKRALRLALQTREQHIRRDKATSNICTAQALLANMAAMYAVYH  338 (429)
T ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf             78887889882001544888997499764467758899873365412434303344420346500899999999999986


Q ss_pred             CCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEE
Q ss_conf             764322222211000000024553047760330
Q gi|254780602|r  287 PQDFVVNNRKIFEYRRDLCVAQLQGVPGIRYMI  319 (400)
Q Consensus       287 ~~~~~~~~~~~~~~~r~~~~~~L~~~~g~~~~~  319 (400)
                      +.+-+.+..+....+..++.+.|.+++|+.+..
T Consensus       339 Gp~GL~~iA~~~~~~A~yl~~~L~~~~g~~~~~  371 (429)
T pfam02347       339 GPKGLKEIARRIHSLTLYLAKGLKKLAGHELDH  371 (429)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCC
T ss_conf             978899999999999999999998669976679


No 326
>KOG1383 consensus
Probab=98.21  E-value=1.2e-06  Score=60.52  Aligned_cols=240  Identities=17%  Similarity=0.168  Sum_probs=131.0

Q ss_pred             CHHHHHHHHHHHHHHCCCCCCCCC-CCCCCCCCCCCCCCCCC----------CCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             989999999986421013333223-32334543333222222----------2332232222333323222222222222
Q gi|254780602|r   70 ISPLREAIVEKFRRDNDLHYTSDQ-IIVGTGAKHVIFNALMA----------TVNMGDEVLIPRPYWVSYPDMVALCGGI  138 (400)
Q Consensus        70 ~~~lR~aia~~~~~~~g~~~~~e~-I~it~G~~~~l~~~~~~----------~~~~Gd~Vlv~~P~y~~y~~~~~~~g~~  138 (400)
                      .-++-+++.+++.+.++-+  ++. =..|.|+++++.++...          +..|  +++.+.-.-..+...++..+.+
T Consensus       118 ~~~~e~~~Vnm~~~L~~~~--~~~~g~~t~G~Ses~l~~~k~~~~~r~~~k~i~~p--~iv~~~~v~~a~eK~a~yf~v~  193 (491)
T KOG1383         118 VRKLEAECVNMIANLFNAP--SDSCGCGTVGGSESGLAAKKSYRNRRKAQKGIDKP--NIVTPQNVHAAFEKAARYFEVE  193 (491)
T ss_pred             HHHHHHHHHHHHHHHHCCC--CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCC--CCCCHHHHHHHHHHHHHHEEEE
T ss_conf             5899999999999984699--64567554465168888989999999740598871--0021588999999987667999


Q ss_pred             CCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC-CCC-
Q ss_conf             222222222322210333100012212201211354210000123333211122333332011101221100000-122-
Q gi|254780602|r  139 PVFVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYR-NCQ-  216 (400)
Q Consensus       139 ~~~v~~~~~~~~~~d~~~l~~~i~~~~k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~-~~~-  216 (400)
                      ...+|+++ +.|++|+..+.+.++++|..++..-|+=|+|.+   +..++|.+.+.+..++.|-.|.+-+.|+-. +.. 
T Consensus       194 l~~V~~~~-~~~~~D~~k~~~~i~eNti~lV~~~~~~p~G~~---e~ve~l~~l~~e~w~ipiHvDa~~GgFi~p~~~~~  269 (491)
T KOG1383         194 LREVPLDE-GDYRVDPGKVVRMIDENTIMLVGSLPNFPTGEI---EDVEKLADLLLEIWDIPIHVDACLGGFINPAGYLN  269 (491)
T ss_pred             EEEEECCC-CCEEECHHHHHHHHCCCEEEEEEECCCCCCCCC---HHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCC
T ss_conf             97650363-225762999998753463799997588876730---15999999999872775042016766210132457


Q ss_pred             CCCCCCCCCCCCCEEEEEC-CCCC-CCCCCCCCCCCCC-CHHHHHHH-HHHHCCCC-------CCCCCCC-----CCCCC
Q ss_conf             3322211123332257414-6544-3223445444221-10122687-53100122-------2332222-----22222
Q gi|254780602|r  217 FSNIVNVEPSLYERTLVVN-GVSK-AYAMTGLRIGYAA-GALSLIKS-MIVLQGQQ-------TSGACSI-----AQWAA  280 (400)
Q Consensus       217 ~~s~~~~~~~~~~~~i~~~-S~SK-~~~~~G~RiG~~v-~~~~li~~-l~~~~~~~-------~~~~~~~-----~q~a~  280 (400)
                      ...+.--.|    .|-.++ +-.| .|.++|  +||++ .++++... +.....+.       +.+-|.+     .|+++
T Consensus       270 ~~~fdFr~p----~V~Sisa~~HKYGl~~~G--~~~vl~r~k~~l~~q~~~~~~w~Gg~y~s~TlngSR~g~~va~~wa~  343 (491)
T KOG1383         270 EEEFDFRVP----GVTSISADGHKYGLAPAG--SSWVLYRNKELLPHQLFFHTDWLGGIYASPTLNGSRPGSQVAAQWAA  343 (491)
T ss_pred             CCCCCCCCC----CEEEEEECCCEEEEECCC--CEEEEECCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf             545666888----811487235300013078--57999856666654389842546765567521257851289999999


Q ss_pred             CCCCCCCC-CCCCCCCCCCCCCCCCHHHHHHCCCCCEEE-ECCCCEEE
Q ss_conf             22234676-432222221100000002455304776033-02740899
Q gi|254780602|r  281 VEALNGPQ-DFVVNNRKIFEYRRDLCVAQLQGVPGIRYM-IPDGAFYL  326 (400)
Q Consensus       281 ~~~l~~~~-~~~~~~~~~~~~~r~~~~~~L~~~~g~~~~-~p~g~~y~  326 (400)
                        ++..++ .|.+. .+...+....+.+.+++++++.+. +|.=+|-+
T Consensus       344 --~~~lG~eGY~~~-~~~ive~~~~l~egie~i~~i~i~gkp~vs~~~  388 (491)
T KOG1383         344 --LMSLGEEGYREN-TQNIVETARKLREGIENIKGIKIVGKPLVSFIL  388 (491)
T ss_pred             --HHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCCCCEECCCCCEEEEE
T ss_conf             --998617889999-999999999999865435561332787379997


No 327
>KOG2467 consensus
Probab=98.18  E-value=6e-05  Score=50.18  Aligned_cols=319  Identities=16%  Similarity=0.161  Sum_probs=160.3

Q ss_pred             HHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCC-CCCCCCC--CCHHHH---HHHHHH-HHHHCCCC
Q ss_conf             9999999999998699726656589749889999999999983887-5699877--898999---999998-64210133
Q gi|254780602|r   16 TLVAAQRVRDLRSKGIDVLCLTAGEPDFDMPENVKYAVVRAMERGE-TKYTAVA--GISPLR---EAIVEK-FRRDNDLH   88 (400)
Q Consensus        16 ~~~~~~~~~~~~~~g~~ii~l~~G~p~~~~p~~i~~a~~~al~~~~-~~Y~~~~--G~~~lR---~aia~~-~~~~~g~~   88 (400)
                      +.++.++-++.+..|.++|.=   + +| +...|.||+-..+.+.. -|||..+  |--|..   |.+|+. -..-|+  
T Consensus        28 v~~ii~~Ek~RQ~~gieLIaS---E-NF-ts~aVmeAlGS~ltNKYSEGyPG~RYYGGne~ID~iE~LCq~RALeaF~--  100 (477)
T KOG2467          28 VHDIIEKEKERQKRGIELIAS---E-NF-TSRAVMEALGSCLTNKYSEGYPGARYYGGNEYIDQIELLCQKRALEAFG--  100 (477)
T ss_pred             HHHHHHHHHHHHHCCEEEEEC---C-CC-HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHC--
T ss_conf             999999888864424167513---5-51-1799999875775065556888651337535789999999999999809--


Q ss_pred             CCCC----CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCC----CCCC-CCCCCC----CCCCCCCCCCCCCCCCHH
Q ss_conf             3322----332334543333222222233223222233-3323----2222-222222----222222222223222103
Q gi|254780602|r   89 YTSD----QIIVGTGAKHVIFNALMATVNMGDEVLIPR-PYWV----SYPD-MVALCG----GIPVFVDTQQDDNFQVSP  154 (400)
Q Consensus        89 ~~~e----~I~it~G~~~~l~~~~~~~~~~Gd~Vlv~~-P~y~----~y~~-~~~~~g----~~~~~v~~~~~~~~~~d~  154 (400)
                      ++|+    ||-.-+| +.|.+.+..+++.|+|+|+-.+ |.=.    .|.. .-+...    .+-.++.++++.|+ +|.
T Consensus       101 ldp~kWGVNVQp~SG-SPANfavYtall~Ph~RiMGLDLP~GGHLsHGy~T~~kkISa~SiyFeSmPYkv~~~TG~-IDY  178 (477)
T KOG2467         101 LDPEKWGVNVQPYSG-SPANFAVYTALLKPHERIMGLDLPSGGHLSHGYQTPTKKISATSIYFESMPYKVDPSTGY-IDY  178 (477)
T ss_pred             CCHHHCCEEECCCCC-CCHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCEEEEEEEECCCCCEEECCCCCC-EEH
T ss_conf             988887333002789-830567875414877713403579887555640168854224664300486102798781-306


Q ss_pred             HHHHCCC-CCCCCCEEECCCCCCCCCCCCC----CCCCCCCCCCCCCCCCEEECCCCC-CCCCCCCCCCCCCCCCCCCCC
Q ss_conf             3310001-2212201211354210000123----333211122333332011101221-100000122332221112333
Q gi|254780602|r  155 EKLEQAI-TPKTKWLFLNSPSNPSGVVYSQ----NRLRALADVLVRNPHVHIISDDIY-EHIVYRNCQFSNIVNVEPSLY  228 (400)
Q Consensus       155 ~~l~~~i-~~~~k~i~l~nP~NPTG~v~s~----~~l~~i~~~~a~~~~i~ii~De~Y-~~l~~~~~~~~s~~~~~~~~~  228 (400)
                      |.|++.- .=++|+|+.      .++.|++    +++++|++-    .+.++++|-+| +.|+-.+.- +|.       +
T Consensus       179 D~Le~~A~~frPk~iia------G~SaY~R~~DYaR~R~Iad~----~gA~Lm~DMAHISgLVAA~vi-psP-------F  240 (477)
T KOG2467         179 DKLEKTATLFRPKLIIA------GTSAYSRLIDYARFRKIADK----VGAYLMADMAHISGLVAAGVI-PSP-------F  240 (477)
T ss_pred             HHHHHHHHHCCCCEEEE------CCCCCHHHCCHHHHHHHHHH----CCCEEEHHHHHHHHHHHCCCC-CCC-------C
T ss_conf             88888887518737995------36321323138999999875----280664135667777752667-996-------4


Q ss_pred             CE-EEEECCCCCCCCCCCCCCCCCCC---HH--------H----HHHHHHHH-CCCCCCCCCCCCCCCCCCCCCCC--CC
Q ss_conf             22-57414654432234454442211---01--------2----26875310-01222332222222222223467--64
Q gi|254780602|r  229 ER-TLVVNGVSKAYAMTGLRIGYAAG---AL--------S----LIKSMIVL-QGQQTSGACSIAQWAAVEALNGP--QD  289 (400)
Q Consensus       229 ~~-~i~~~S~SK~~~~~G~RiG~~v~---~~--------~----li~~l~~~-~~~~~~~~~~~~q~a~~~~l~~~--~~  289 (400)
                      |. -|+..+..|++.  |-|-|.+--   .+        +    +-++++.. --..-.++-...-.+.+.+|...  .+
T Consensus       241 ey~DiVTTTTHKsLR--GPRg~mIFyRkGvk~~~~k~g~~i~ydlE~kINfaVFP~lQGGPHNhtIaalAvALkQa~tpe  318 (477)
T KOG2467         241 EYCDIVTTTTHKSLR--GPRGAMIFYRKGVKSIKPKQGKEILYDLEDKINFAVFPGLQGGPHNHTIAALAVALKQAMTPE  318 (477)
T ss_pred             CCCCEEECCCCCCCC--CCCCEEEEEECCCCCCCCCCCCCCEECHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCHH
T ss_conf             201246413434556--876316898326776787889764012665301222665568987335899999998607877


Q ss_pred             CCCCCCCCCCCCCCCHHHHHHCCCCCEEEECCC--CEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCC
Q ss_conf             322222211000000024553047760330274--089986264102332113322489899999999873979983502
Q gi|254780602|r  290 FVVNNRKIFEYRRDLCVAQLQGVPGIRYMIPDG--AFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSS  367 (400)
Q Consensus       290 ~~~~~~~~~~~~r~~~~~~L~~~~g~~~~~p~g--~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~  367 (400)
                      |- +-.+...+|...+.+.|.+. |.+... .|  .-.+.+|+...-          .| -.-+++.++..+|.+.--+.
T Consensus       319 fk-~Yq~qV~~Nakala~~l~~~-Gy~lvt-gGTDnHlvLvDLr~~G----------~d-GarvE~vle~~~I~~NKNtv  384 (477)
T KOG2467         319 FK-EYQKQVLKNAKALASALISR-GYKLVT-GGTDNHLVLVDLRPKG----------VD-GARVEKVLELCHIALNKNTV  384 (477)
T ss_pred             HH-HHHHHHHHHHHHHHHHHHHC-CCEEEC-CCCCCEEEEEECCCCC----------CC-HHHHHHHHHHHHHHHCCCCC
T ss_conf             99-99999999999999999972-966740-7866527999656467----------75-08999999875413337767


Q ss_pred             CCC-----CCEEEEE
Q ss_conf             289-----9728999
Q gi|254780602|r  368 FGH-----GPSIRIS  377 (400)
Q Consensus       368 Fg~-----~~~iRis  377 (400)
                      ||.     ++.|||.
T Consensus       385 pGD~Sal~PgGiRiG  399 (477)
T KOG2467         385 PGDKSALSPGGIRIG  399 (477)
T ss_pred             CCCCCCCCCCCEECC
T ss_conf             787445588843316


No 328
>KOG1402 consensus
Probab=98.15  E-value=2.3e-06  Score=58.80  Aligned_cols=221  Identities=15%  Similarity=0.159  Sum_probs=126.7

Q ss_pred             HHHHHHCCCCC-CCCCEEECCC-CCCCCCCCCCC-CCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCC-CCCC
Q ss_conf             03331000122-1220121135-42100001233-3321112233333201110122110000012233222111-2333
Q gi|254780602|r  153 SPEKLEQAITP-KTKWLFLNSP-SNPSGVVYSQN-RLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVE-PSLY  228 (400)
Q Consensus       153 d~~~l~~~i~~-~~k~i~l~nP-~NPTG~v~s~~-~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~-~~~~  228 (400)
                      |.++|+.++.. +..++++ -| +--.|.+.++. -+++.-++| ++|++++|.||+-..+.-.|+    ++..+ ....
T Consensus       195 d~eale~~l~~~~vaaFiv-EPIQGEaGVvvP~~GYL~~vreLC-tkynvl~I~DEvQTGl~RTGk----~la~d~env~  268 (427)
T KOG1402         195 DAEALEVALKSPNVAAFIV-EPIQGEAGVVVPPPGYLKKVRELC-TKYNVLLIADEVQTGLARTGK----LLACDYENVR  268 (427)
T ss_pred             CHHHHHHHHCCCCEEEEEE-ECCCCCCCEEECCCHHHHHHHHHH-HHHCEEEEEHHHHHCCCCCCC----EEEEEHHHCC
T ss_conf             7799999862987568985-113466533728920678999998-751478882443425234674----7886543158


Q ss_pred             CEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf             22574146544322344544422110122687531001222332222222222223467643222222110000000245
Q gi|254780602|r  229 ERTLVVNGVSKAYAMTGLRIGYAAGALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQ  308 (400)
Q Consensus       229 ~~~i~~~S~SK~~~~~G~RiG~~v~~~~li~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~~~~~  308 (400)
                      .. +++  +.|.++-.=+-+..+.++++++-.+.......+.+-+++...+++++|+--++  +++.+.-+.--+.+...
T Consensus       269 PD-ivi--lgKalSGG~~Pvsavl~~~~im~~~~pgeHgsTyggNpLg~~vaiAalevi~e--ekL~era~~lG~~l~~~  343 (427)
T KOG1402         269 PD-IVI--LGKALSGGVYPVSAVLADDDIMLNIKPGEHGSTYGGNPLGCAVAIAALEVIVE--EKLVERAAKLGEILRDQ  343 (427)
T ss_pred             CC-EEE--EECCCCCCEEEEEEEEECHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
T ss_conf             77-689--81113687045689985478986168775556568880888999999999999--78999999987999999


Q ss_pred             HHCCC----C-CEEEECCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCCCCEEEEE--EECC
Q ss_conf             53047----7-603302740899862641023321133224898999999998739799835022899728999--6299
Q gi|254780602|r  309 LQGVP----G-IRYMIPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGHGPSIRIS--YAVS  381 (400)
Q Consensus       309 L~~~~----g-~~~~~p~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~iRis--~~~~  381 (400)
                      |++++    + ++..+.. |++.-+.+       .+......+.++.|..| ++.|++.-|-+    ++-||++  ++.+
T Consensus       344 L~~l~~~~p~~v~~VRGr-Gl~~ai~i-------~~~~~~~~~aw~~cl~l-k~~g~LAkptH----~~IiRfaPPL~I~  410 (427)
T KOG1402         344 LNKLQKKFPHVVKEVRGR-GLLNAIVI-------NPSKTSGQDAWDVCLAL-KENGLLAKPTH----GNIIRFAPPLVIS  410 (427)
T ss_pred             HHHCCCCCCCHHHEEECC-CEEEEEEE-------CCCCCCCHHHHHHHHCC-CCCCCCCCCCC----CCEEEECCCCCCC
T ss_conf             985440256444334225-33788996-------15556646588888703-02561047778----8758746884357


Q ss_pred             HHHHHHHHHHHHHHHH
Q ss_conf             9999999999999998
Q gi|254780602|r  382 DAILEEACVRIKRFCH  397 (400)
Q Consensus       382 ~e~l~~al~rl~~~l~  397 (400)
                      +++++++++.|++.+.
T Consensus       411 e~dl~eg~e~i~k~i~  426 (427)
T KOG1402         411 EEDLREGIEAIEKTIA  426 (427)
T ss_pred             HHHHHHHHHHHHHHHC
T ss_conf             8999889999999742


No 329
>TIGR02006 IscS cysteine desulfurase IscS; InterPro: IPR010240   This entry represents cysteine deusulphurase (IscS), one of several cysteine desulphurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulphur cluster assembly.; GO: 0030170 pyridoxal phosphate binding, 0031071 cysteine desulfurase activity, 0006534 cysteine metabolic process.
Probab=98.15  E-value=5.8e-07  Score=62.44  Aligned_cols=320  Identities=17%  Similarity=0.186  Sum_probs=164.1

Q ss_pred             CCCCHHHHHHHHHHHH-CCCCCCCC----------CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             9889999999999983-88756998----------778989999999986421013333223323345433332222222
Q gi|254780602|r   43 FDMPENVKYAVVRAME-RGETKYTA----------VAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFNALMAT  111 (400)
Q Consensus        43 ~~~p~~i~~a~~~al~-~~~~~Y~~----------~~G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l~~~~~~~  111 (400)
                      .|..+.+.++|...+- ++.+|-|.          ..-....|+.|++..      ..|+.+|++|+|+++.-.+++..+
T Consensus        13 ~P~~~~v~~~m~~~~~~~g~fGnP~s~sh~fGW~a~~~v~~ar~~~~~~~------~~d~~ei~ftsGate~~nl~i~G~   86 (404)
T TIGR02006        13 TPVDKRVAEKMLEYLTEKGNFGNPASRSHKFGWEAEEAVENARNEVAELI------GADSREIVFTSGATESDNLAIKGV   86 (404)
T ss_pred             CCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH------CCCCCEEEEECCCCCCHHHHHHHH
T ss_conf             86458999999998874156688642343345306889999999999984------588740787237753024788889


Q ss_pred             C----CCCCCCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCC
Q ss_conf             3----3223222233332322222---22222222222222223222103331000122122012113542100001233
Q gi|254780602|r  112 V----NMGDEVLIPRPYWVSYPDM---VALCGGIPVFVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQN  184 (400)
Q Consensus       112 ~----~~Gd~Vlv~~P~y~~y~~~---~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~k~i~l~nP~NPTG~v~s~~  184 (400)
                      .    ++|..++...-..-.....   .+..|..+.+++...++  .+|++.++++++++|-++-+..-||-.|.+-+  
T Consensus        87 a~fy~~k~~h~it~~~ehk~vl~~~r~le~~G~~vtyl~~~~~G--~~~~~~l~~~~~~~t~lvs~m~vnne~G~~~~--  162 (404)
T TIGR02006        87 AKFYKSKGKHIITSKTEHKAVLDTCRELEREGFEVTYLEVKEDG--LIDLEELKAAIRDDTILVSVMAVNNEIGVIQD--  162 (404)
T ss_pred             HHHHHCCCCEEEEEEHHHHHHHHHHHHHHHCCCEEEEEECCCCC--CEEHHHHHHHHHCCEEEEEEEEECCCCCHHHH--
T ss_conf             99974237667864003678999999887578168985014566--21089999874127057875531144330465--


Q ss_pred             CCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE--CCCCCCCCCCCCCCCCCCCHHH--H-HH
Q ss_conf             33211122333332011101221100000122332221112333225741--4654432234454442211012--2-68
Q gi|254780602|r  185 RLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVV--NGVSKAYAMTGLRIGYAAGALS--L-IK  259 (400)
Q Consensus       185 ~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~--~S~SK~~~~~G~RiG~~v~~~~--l-i~  259 (400)
                       +.+|.++| |..+++.-.|.+-+.    |+-...+       .+..+-+  -|-.|.||.-|  +|.+.....  + ++
T Consensus       163 -~~~i~~~~-r~~~~~fh~d~~q~~----Gk~~~~~-------~~~~~dl~s~s~hk~yGPkG--iGalyv~~~Prvr~~  227 (404)
T TIGR02006       163 -IAAIGELC-RERKVLFHVDAAQSV----GKIPIDV-------EELKVDLMSISGHKIYGPKG--IGALYVRRKPRVRLE  227 (404)
T ss_pred             -HHHHHHHH-HHCCEEEEEECCCCC----CCEEEEH-------HHHHHHHHHHCCCCCCCCCC--CCEEEEECCCCEEEE
T ss_conf             -88999876-304414764000134----5113435-------34310121001231026755--212455127733552


Q ss_pred             HHHHH----CCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEECCCCEEEEEECCCCC
Q ss_conf             75310----012223322222222-2222346764322222211000000024553047760330274089986264102
Q gi|254780602|r  260 SMIVL----QGQQTSGACSIAQWA-AVEALNGPQDFVVNNRKIFEYRRDLCVAQLQGVPGIRYMIPDGAFYLYPSCQDLI  334 (400)
Q Consensus       260 ~l~~~----~~~~~~~~~~~~q~a-~~~~l~~~~~~~~~~~~~~~~~r~~~~~~L~~~~g~~~~~p~g~~y~~~~~~~~~  334 (400)
                      .+..-    +.. .++.-...|.. +-.++.-..+.+.+....+..-++.+.+.++.+..+.+..   ..-  -.+....
T Consensus       228 ~~~~GGG~erG~-r~Gtl~~~~ivG~G~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~---~~~--~~~~~~l  301 (404)
T TIGR02006       228 ALIHGGGHERGM-RSGTLPTHQIVGLGEAFRIAKEELAKDTARVLKLRDRLLNGIESIEEVYLNG---DLE--QRVKGNL  301 (404)
T ss_pred             EECCCCCCCCCC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---HHH--HHHHHHH
T ss_conf             000488743541-0244320143210167899999998889999999999999874456533121---144--3112221


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCC--------------CCC-----CEEEEEEE--CCHHHHHHHHHHHH
Q ss_conf             3321133224898999999998739799835022--------------899-----72899962--99999999999999
Q gi|254780602|r  335 GKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSF--------------GHG-----PSIRISYA--VSDAILEEACVRIK  393 (400)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~F--------------g~~-----~~iRis~~--~~~e~l~~al~rl~  393 (400)
                         ... ......+.+.   +.=..+++..|+++              |.+     ..+|++++  +.+++++.+++.+.
T Consensus       302 ---n~s-f~~veGesl~---~a~~~~avssGsaCts~slePsyvlr~lG~~~elah~s~r~~~Gr~tt~~e~~~~~~~v~  374 (404)
T TIGR02006       302 ---NVS-FNYVEGESLI---MALKDLAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFTLGRFTTEEEIDYAVKLVK  374 (404)
T ss_pred             ---EEE-EEEECHHHHH---HHHHHHHHCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf             ---012-2200204788---888887530564100133535578876064201223222100111210789999999999


Q ss_pred             HHHHHCC
Q ss_conf             9998609
Q gi|254780602|r  394 RFCHSLQ  400 (400)
Q Consensus       394 ~~l~~l~  400 (400)
                      +.+++||
T Consensus       375 ~~~~~lr  381 (404)
T TIGR02006       375 SAVDKLR  381 (404)
T ss_pred             HHHHHHH
T ss_conf             9999886


No 330
>cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT).  PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine.
Probab=98.11  E-value=3.3e-05  Score=51.78  Aligned_cols=318  Identities=13%  Similarity=0.166  Sum_probs=152.2

Q ss_pred             EECCCCCCCCCCCHHHHHHHHHHHHC----CC--CCCCC-CCCCHHHHHHHHHHHHHHCCCCCCCC-CCCCCC-CCCCCC
Q ss_conf             66565897498899999999999838----87--56998-77898999999998642101333322-332334-543333
Q gi|254780602|r   34 LCLTAGEPDFDMPENVKYAVVRAMER----GE--TKYTA-VAGISPLREAIVEKFRRDNDLHYTSD-QIIVGT-GAKHVI  104 (400)
Q Consensus        34 i~l~~G~p~~~~p~~i~~a~~~al~~----~~--~~Y~~-~~G~~~lR~aia~~~~~~~g~~~~~e-~I~it~-G~~~~l  104 (400)
                      +||+.|=.  ..|+.|++.+++.+-+    |.  .+-.. +.-..++-+..-+.+++..++  ..+ +|++.. |++...
T Consensus         1 ~NF~aGPa--~lp~~Vl~~~~~e~~~~~~~G~sile~SHRs~~f~~i~~~a~~~lr~Ll~i--Pd~Y~Vlfl~GGat~qf   76 (355)
T cd00611           1 INFSAGPA--ALPEEVLEQAQKELLDFNGLGMSVMEMSHRSKDFEAIVNEAESDLRELLNI--PDNYKVLFLQGGATGQF   76 (355)
T ss_pred             CCCCCCCC--CCCHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHCC--CCCEEEEEECCCHHHHH
T ss_conf             96788876--589999999999975426886015512668878999999999999998489--99808999578449999


Q ss_pred             CCCCCCCCCCCCCCCCC-CCCCCCC-CCCCCCCCCCCCCCCCCCCCCC--CCHHHHHHCCCCCCCCCEEECCCCCC-CCC
Q ss_conf             22222223322322223-3332322-2222222222222222222322--21033310001221220121135421-000
Q gi|254780602|r  105 FNALMATVNMGDEVLIP-RPYWVSY-PDMVALCGGIPVFVDTQQDDNF--QVSPEKLEQAITPKTKWLFLNSPSNP-SGV  179 (400)
Q Consensus       105 ~~~~~~~~~~Gd~Vlv~-~P~y~~y-~~~~~~~g~~~~~v~~~~~~~~--~~d~~~l~~~i~~~~k~i~l~nP~NP-TG~  179 (400)
                      ..+.+.++.+++..... +=.|..- ..-++..|...+-....++.+|  .|+.+.+.  +++....+.+| +||- +|.
T Consensus        77 ~~ip~Nll~~~~~a~y~~tG~ws~ka~~eA~~~~~~~~i~~~~~~~~~~~iP~~~~~~--~~~~~~yvh~t-~NETi~Gv  153 (355)
T cd00611          77 AAVPLNLLGDKGTADYVVTGAWSAKAAKEAKRYGGVVVIVAAKEEGKYTKIPDVETWD--LAPDAAYVHYC-SNETIHGV  153 (355)
T ss_pred             HHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHCC--CCCCCCEEEEE-ECCCCCCE
T ss_conf             9999851478870589973726899999998746774103665667877689934327--88877779993-25775343


Q ss_pred             CCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf             01233332111223333320111012211000001223322211123332257414654432234454442211012268
Q gi|254780602|r  180 VYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTGLRIGYAAGALSLIK  259 (400)
Q Consensus       180 v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~v~~~~li~  259 (400)
                      -+.     .+    .+..+..+|+|-. +++.  ..+ .       +..+-.++..|.-|.+|.+|  +++++..+++++
T Consensus       154 ~~~-----~~----p~~~~~~lV~D~S-S~~~--s~~-i-------D~~~~d~iYagaQKnlGpaG--~tvvIir~~ll~  211 (355)
T cd00611         154 EFD-----EV----PDTGGVPLVADMS-SNIL--SRP-I-------DVSKFGVIYAGAQKNLGPAG--VTVVIVRKDLLG  211 (355)
T ss_pred             ECC-----CC----CCCCCCCEEEEEC-CHHC--CCC-C-------CHHHCCEEEEECCCCCCCCC--EEEEEECHHHHH
T ss_conf             446-----56----6778962787502-0540--867-6-------77892189987100156665--089998499971


Q ss_pred             HHHHH-------CC----CCCCC-CCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEE--EECCC
Q ss_conf             75310-------01----22233-2222222222---223467643222222110000000245530477603--30274
Q gi|254780602|r  260 SMIVL-------QG----QQTSG-ACSIAQWAAV---EALNGPQDFVVNNRKIFEYRRDLCVAQLQGVPGIRY--MIPDG  322 (400)
Q Consensus       260 ~l~~~-------~~----~~~~~-~~~~~q~a~~---~~l~~~~~~~~~~~~~~~~~r~~~~~~L~~~~g~~~--~~p~g  322 (400)
                      +..+.       +.    ....+ ||++..+.+.   +++. .+.-++.+.++-+++.+.+++.+.+-+++..  ..|+.
T Consensus       212 ~~~~~~P~~l~y~~~~~~~s~~NTPp~f~iy~~~lv~~Wl~-~~GGl~~~~~~n~~kA~~LY~~iD~s~~~y~~~v~~~~  290 (355)
T cd00611         212 KARKITPSMLNYKTHADNNSLYNTPPTFAIYMMGLVLKWLK-EQGGVEAMEKRNRQKAQLLYDTIDNSNGFYRGPVDKRA  290 (355)
T ss_pred             HCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCHHH
T ss_conf             02446973200999985255557962799999999999988-76899999999999999999999858880117898233


Q ss_pred             --CEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCCCCEEEEEE--ECCHHHHHHHHHHHHHH
Q ss_conf             --08998626410233211332248989999999987397998350228997289996--29999999999999999
Q gi|254780602|r  323 --AFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGHGPSIRISY--AVSDAILEEACVRIKRF  395 (400)
Q Consensus       323 --~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~iRis~--~~~~e~l~~al~rl~~~  395 (400)
                        -+-+-.++.+           ...+..|.... ++.|+.-.-|+.  .-|.+|+|+  +.+.|.++.-++-|++|
T Consensus       291 RS~mnv~f~~~~-----------~~l~~~Fl~~a-~~~Gl~~lkGhR--svGg~RaS~ynA~~~e~V~aL~~fm~~f  353 (355)
T cd00611         291 RSRMNVPFRLGK-----------EELEKEFLKEA-EAAGMIGLKGHR--SVGGIRASIYNALSLEGVQALADFMKEF  353 (355)
T ss_pred             CCCCEEEEEECC-----------HHHHHHHHHHH-HHCCCCCCCCCC--CCCCEEEEEECCCCHHHHHHHHHHHHHH
T ss_conf             587758998588-----------78899999999-987882556875--2235278850898999999999999997


No 331
>TIGR01437 selA_rel pyridoxal phosphate-dependent enzyme, putative; InterPro: IPR006337    Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). PLP is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination , , . PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors . Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy .   PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalyzed reactions, enzymatic and non-enzymatic .   This entry represents a group of proteins that are related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation. .
Probab=98.11  E-value=5.6e-06  Score=56.46  Aligned_cols=328  Identities=19%  Similarity=0.227  Sum_probs=183.1

Q ss_pred             CCEEECCCCCCCC----CCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             9726656589749----889999999999983887569987789899999999864210133332233233454333322
Q gi|254780602|r   31 IDVLCLTAGEPDF----DMPENVKYAVVRAMERGETKYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFN  106 (400)
Q Consensus        31 ~~ii~l~~G~p~~----~~p~~i~~a~~~al~~~~~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l~~  106 (400)
                      +.|||- .|.|.|    ...++|.++.+.+-+.       .--..+|-+.--+|+.++.|.    |+=-||+|++.|+.+
T Consensus         9 k~ViNa-~GkMTiLGvs~Vs~ev~~a~~~~~~~-------F~em~~ls~~tGe~~ar~lgv----EdayIts~AsAGia~   76 (391)
T TIGR01437         9 KRVINA-IGKMTILGVSKVSDEVLEATKYVSDI-------FIEMDDLSRKTGEYIARRLGV----EDAYITSGASAGIAL   76 (391)
T ss_pred             EEEEEC-CCCEEECCCCHHHHHHHHHHHHHHHH-------CEEHHHHHHHHHHHHHHHHCC----CHHHHHHHHHHHHHH
T ss_conf             036723-45213536640369999998756551-------010899999999999988443----067889878889999


Q ss_pred             CCCCCCCCCC----------------CCCCCCCCCCCCC----CCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCC
Q ss_conf             2222233223----------------2222333323222----2222222222222222223222103331000122122
Q gi|254780602|r  107 ALMATVNMGD----------------EVLIPRPYWVSYP----DMVALCGGIPVFVDTQQDDNFQVSPEKLEQAITPKTK  166 (400)
Q Consensus       107 ~~~~~~~~Gd----------------~Vlv~~P~y~~y~----~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~k  166 (400)
                      .+.+++..|+                +|+++.|-=..|.    .++.+.|.+++.+  ..+|  ..+.+.||..|+++|+
T Consensus        77 ~vAali~~g~~ar~~~~~i~e~g~~~~vv~~rgH~vdyg~PV~~~i~~gGg~ivE~--G~~n--~~s~~~lE~~I~~kt~  152 (391)
T TIGR01437        77 AVAALISKGTRARVIKDIIEEKGRKREVVLQRGHNVDYGAPVEDLIALGGGRIVEV--GDEN--LVSEESLEETIKEKTA  152 (391)
T ss_pred             HHHHHHCCCCCCEEECCHHHCCCCEEEEEEECCCCCCCCCCHHHHHHCCCCCEEEE--CCCC--CCCHHHHHHHHHHHHH
T ss_conf             99997516763201101032033400678627874567880899996189948997--7888--7567899999977346


Q ss_pred             CEEECCCC--CCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCC
Q ss_conf             01211354--2100001233332111223333320111012211000001223322211123332257414654432234
Q gi|254780602|r  167 WLFLNSPS--NPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMT  244 (400)
Q Consensus       167 ~i~l~nP~--NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~~~  244 (400)
                      +|+.+--|  -|-+...+.++   ++++ |+.|+++||+|.+ .++--.+ .......  .+   --++++|-.|.++  
T Consensus       153 aiLyvksh~~vqk~ml~P~~~---~~~v-A~~~~vPlIVDAA-AeiPP~e-dL~~y~~--~G---aDlViYSGaKa~~--  219 (391)
T TIGR01437       153 AILYVKSHHLVQKDMLLPVEE---VIRV-AQSYKVPLIVDAA-AEIPPEE-DLTRYLK--AG---ADLVIYSGAKALE--  219 (391)
T ss_pred             HHHHHHHHCCCCCCCCCCHHH---HHHH-HHHCCCCEEEECC-CCCCCHH-HHHHHHH--HC---CCEEEECCHHHCC--
T ss_conf             755565321357666663899---9999-9756898898625-6898801-4689997--16---8755532034504--


Q ss_pred             CCC-CCCCCCHHHHHHHHHHHCCCC-CCCCC---CCCCCC--------------CCCCCCC-CCCCCCCCCCCCCCCCCC
Q ss_conf             454-442211012268753100122-23322---222222--------------2222346-764322222211000000
Q gi|254780602|r  245 GLR-IGYAAGALSLIKSMIVLQGQQ-TSGAC---SIAQWA--------------AVEALNG-PQDFVVNNRKIFEYRRDL  304 (400)
Q Consensus       245 G~R-iG~~v~~~~li~~l~~~~~~~-~~~~~---~~~q~a--------------~~~~l~~-~~~~~~~~~~~~~~~r~~  304 (400)
                      |.- -|+++|-++.|.......... ..+|.   .+..++              ...+|.+ .++|+.+++..+    +-
T Consensus       220 gpsnsGl~vGrK~~I~~~~~~g~gseenGPDGtrvfIgRaMKIgKe~ivg~v~AvE~yl~~~~e~~~~k~~~~l----~p  295 (391)
T TIGR01437       220 GPSNSGLVVGRKDYIAAAKSQGKGSEENGPDGTRVFIGRAMKIGKENIVGLVAAVERYLTFNDEDWLRKQRSRL----DP  295 (391)
T ss_pred             CCCCCCEEECHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH----HH
T ss_conf             64326323300889999986288765668986568873265103689999999999985168726789999984----36


Q ss_pred             HHHHHHCCCCCEE-EECC-CC---EEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCC-CCCEEEEEE
Q ss_conf             0245530477603-3027-40---8998626410233211332248989999999987397998350228-997289996
Q gi|254780602|r  305 CVAQLQGVPGIRY-MIPD-GA---FYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFG-HGPSIRISY  378 (400)
Q Consensus       305 ~~~~L~~~~g~~~-~~p~-g~---~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg-~~~~iRis~  378 (400)
                      +.+.+.++.++.. ..-+ ||   -=+|.-     .-.....+...+..|.+.+| +...|.+..-+ |- .+|-+-+..
T Consensus       296 ~a~aIs~i~~l~a~iv~D~agnhPR~i~r~-----rV~v~~~~~Gl~A~eV~~~L-k~~~~aIYtr~-YQ~~~G~~~ldp  368 (391)
T TIGR01437       296 IAEAISDIDDLMAKIVQDEAGNHPRDIYRA-----RVKVDAEEGGLSADEVISRL-KAERVAIYTRE-YQLLDGVLELDP  368 (391)
T ss_pred             HHHHHHHHHHCEEEEEECCCCCCCCCEEEE-----EEEEECCCCCCCHHHHHHHH-CCCCCCCHHHH-HHHHCCEEEECC
T ss_conf             999985241011235676889888543688-----88982222476789999985-07999500224-554488588766


Q ss_pred             -ECCHHHHHHHHHHHHHHHHH
Q ss_conf             -29999999999999999986
Q gi|254780602|r  379 -AVSDAILEEACVRIKRFCHS  398 (400)
Q Consensus       379 -~~~~e~l~~al~rl~~~l~~  398 (400)
                       +..++++..-++||.+-.+.
T Consensus       369 r~v~e~e~~~Iv~rL~eI~~~  389 (391)
T TIGR01437       369 RSVKEDEMALIVDRLSEIVEK  389 (391)
T ss_pred             CCCCCCCHHHHHHHHHHHHHH
T ss_conf             113614168999989999862


No 332
>TIGR02617 tnaA_trp_ase tryptophanase; InterPro: IPR013440    Proteins in this entry belong to the beta-eliminating lyase family and are thought to act as tryptophanases (4.1.99.1 from EC) (also known as L-tryptophan indole-lyases). The genes encoding these proteins are, as a rule, found with a tryptophanase leader peptide TnaC (IPR013439 from INTERPRO) encoded upstream. ; GO: 0009034 tryptophanase activity, 0006568 tryptophan metabolic process.
Probab=97.97  E-value=6e-05  Score=50.20  Aligned_cols=327  Identities=16%  Similarity=0.240  Sum_probs=186.5

Q ss_pred             HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-----CC----CCCC
Q ss_conf             99999999838875699877898999999998642101333322332334543333222222233-----22----3222
Q gi|254780602|r   49 VKYAVVRAMERGETKYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFNALMATVN-----MG----DEVL  119 (400)
Q Consensus        49 i~~a~~~al~~~~~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l~~~~~~~~~-----~G----d~Vl  119 (400)
                      +.+.+.-++-.|.-.|+.++-.-.|-++|    +.-+|-++    -++|+=+..|=...+-.++.     .|    .-|.
T Consensus        55 ~~~~~~Aa~~~GDEAY~GSR~Yy~La~~V----~~~~GY~Y----TIPTHQGRGAEQI~~P~LI~~~~~~~G~~~~kmV~  126 (468)
T TIGR02617        55 VTQRMQAAMMRGDEAYSGSRSYYALADKV----KEIFGYQY----TIPTHQGRGAEQIYIPVLIKKREAEKGLDRSKMVA  126 (468)
T ss_pred             CCHHHHHHHHCCCCCCCCCHHHHHHHHHH----HHHCCCCC----CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEE
T ss_conf             05466776423641021323589999997----66427311----36875788604456657888776625898552788


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCC------CCC--CCHHHHHHCCCCC----CCCCEEE-CCCCCCCCCCCCCCCC
Q ss_conf             2333323222222222222222222222------322--2103331000122----1220121-1354210000123333
Q gi|254780602|r  120 IPRPYWVSYPDMVALCGGIPVFVDTQQD------DNF--QVSPEKLEQAITP----KTKWLFL-NSPSNPSGVVYSQNRL  186 (400)
Q Consensus       120 v~~P~y~~y~~~~~~~g~~~~~v~~~~~------~~~--~~d~~~l~~~i~~----~~k~i~l-~nP~NPTG~v~s~~~l  186 (400)
                      +.+-.|..-..-.++.|++..-|-+.+.      -+|  ..|+|+||+.|.+    ++-.|+- ++-|.--|+=.|...+
T Consensus       127 ~SNyfFDTT~~H~~~Ng~~a~NV~~~~AFDT~~~~DfKG~FDl~~LE~~I~E~G~~NV~~Iv~TiTcNSaGGQPvSlANl  206 (468)
T TIGR02617       127 LSNYFFDTTQGHVQINGCKAKNVYTSEAFDTGVKYDFKGNFDLEELEKTIAEAGPDNVPYIVTTITCNSAGGQPVSLANL  206 (468)
T ss_pred             EECCCCHHHHHHHHHCCCEEEEEEEECCCCCCEECCCCCCCCHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCHHHHHHH
T ss_conf             73232011134443135237887752022343201335675778887887502856632777754316896842678888


Q ss_pred             CCCCCCCCCCCCCEEECCCCCC----CCCC-C--CCCCCCCCCCCCCCCC--EEEEECCCCCCCCCCCCCCC-CCCC-HH
Q ss_conf             2111223333320111012211----0000-0--1223322211123332--25741465443223445444-2211-01
Q gi|254780602|r  187 RALADVLVRNPHVHIISDDIYE----HIVY-R--NCQFSNIVNVEPSLYE--RTLVVNGVSKAYAMTGLRIG-YAAG-AL  255 (400)
Q Consensus       187 ~~i~~~~a~~~~i~ii~De~Y~----~l~~-~--~~~~~s~~~~~~~~~~--~~i~~~S~SK~~~~~G~RiG-~~v~-~~  255 (400)
                      +++.++ |++|||.||.|.+=.    +|+- .  +.+--|+-.+..+++.  ..+.+ |.-|.--+   .+| .++- ++
T Consensus       207 KAvY~I-Ak~yDIPVv~DSARFaENAyFIkQRE~~Y~~~si~~I~~E~Y~YaD~L~M-SAKKD~~V---~~GGL~C~~Dd  281 (468)
T TIGR02617       207 KAVYEI-AKKYDIPVVMDSARFAENAYFIKQREKEYENWSIEQITREMYKYADMLAM-SAKKDALV---NMGGLLCFKDD  281 (468)
T ss_pred             HHHHHH-HHHCCCCEEECCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHH-HHCCCCCC---CCCCEEEECCC
T ss_conf             999999-86459986862302233457777533000033188988886542020110-10125400---04762552035


Q ss_pred             HHHHHHHHHCCCCCCCCC-----CCCCC------CCCCCCCCC--CCCCCCCCCCCC-CCCCCHHHHHHCCCCCEEEECC
Q ss_conf             226875310012223322-----22222------222223467--643222222110-0000002455304776033027
Q gi|254780602|r  256 SLIKSMIVLQGQQTSGAC-----SIAQW------AAVEALNGP--QDFVVNNRKIFE-YRRDLCVAQLQGVPGIRYMIPD  321 (400)
Q Consensus       256 ~li~~l~~~~~~~~~~~~-----~~~q~------a~~~~l~~~--~~~~~~~~~~~~-~~r~~~~~~L~~~~g~~~~~p~  321 (400)
                      .+.+-...++   +.|++     +....      +.+-.|.++  ++|+.     || .+-+++.+.|+++ |+.+..|.
T Consensus       282 sf~D~y~E~R---T~CV~~EGF~TYGGL~G~~ME~LAvGL~~GM~~~~LA-----YRI~QV~YL~~~L~~~-Gv~~Q~P~  352 (468)
T TIGR02617       282 SFFDVYTEVR---TLCVVQEGFPTYGGLEGGAMERLAVGLYDGMNEDYLA-----YRINQVAYLVNGLEDI-GVVIQQPA  352 (468)
T ss_pred             CHHHHHHCCC---CEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHH-----HHHHHHHHHHHHHHHC-CCEEECCC
T ss_conf             2245533312---2232146755557776045788875145300343277-----8899999998557667-80576499


Q ss_pred             CCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEEC-CCCC-CCC-------C----EEEEEE-----E-CCH
Q ss_conf             4089986264102332113322489899999999873979983-5022-899-------7----289996-----2-999
Q gi|254780602|r  322 GAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQ-GSSF-GHG-------P----SIRISY-----A-VSD  382 (400)
Q Consensus       322 g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~p-G~~F-g~~-------~----~iRis~-----~-~~~  382 (400)
                      ||--+|+|...+.. +.|..  ......++.+|-.++||-.+- ||-. |-+       +    -+|+++     + ...
T Consensus       353 GGHA~FVDA~~LLP-HIPa~--QFPA~AL~~ELY~~AGIRaVEIGSlLLGRDP~TGKQ~P~P~ELLRLTIPR~~YT~~HM  429 (468)
T TIGR02617       353 GGHAAFVDAGKLLP-HIPAD--QFPAHALACELYKVAGIRAVEIGSLLLGRDPKTGKQKPCPAELLRLTIPRATYTQTHM  429 (468)
T ss_pred             CCEEEEEECCCCCC-CCCCC--CCHHHHHHHHHHHHCCCEEEEECHHHHCCCCCCCCCCCCHHHHHHHCCCCHHHHCCHH
T ss_conf             86376763110278-88865--5548888555677617114531014216788787888870677640266201101124


Q ss_pred             HHHHHHHHHHHHHHHHCC
Q ss_conf             999999999999998609
Q gi|254780602|r  383 AILEEACVRIKRFCHSLQ  400 (400)
Q Consensus       383 e~l~~al~rl~~~l~~l~  400 (400)
                      |=+.||...+|+-+..+|
T Consensus       430 DfiiEAF~~~K~~~~~iK  447 (468)
T TIGR02617       430 DFIIEAFKSVKENAPNIK  447 (468)
T ss_pred             HHHHHHHHHHHHHHHHCC
T ss_conf             789999999987543347


No 333
>PRK12462 phosphoserine aminotransferase; Provisional
Probab=97.96  E-value=0.0001  Score=48.71  Aligned_cols=324  Identities=15%  Similarity=0.136  Sum_probs=154.3

Q ss_pred             CCEEECCCCCCCCCCCHHHHHHHHHHHHC-CCCCC-----CC-CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf             97266565897498899999999999838-87569-----98-7789899999999864210133332233233454333
Q gi|254780602|r   31 IDVLCLTAGEPDFDMPENVKYAVVRAMER-GETKY-----TA-VAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHV  103 (400)
Q Consensus        31 ~~ii~l~~G~p~~~~p~~i~~a~~~al~~-~~~~Y-----~~-~~G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~  103 (400)
                      ++.+||+.|-.  ..|+.|++.+++.+-+ ..+|.     .. +.-..++-+..-+.+++..+++-+- +|++..|+..+
T Consensus         3 ~~~~NF~aGPa--~LP~~Vl~~~~~e~~~~~~~G~simE~SHRs~~f~~i~~~a~~~lr~Ll~iPd~Y-~VlflqGGAt~   79 (364)
T PRK12462          3 RNQLNFSGGPG--ALPDTVLEQVRQAVVELPETGLSVLGMSHRSSWFSSLLAQAQADLRDLLGIPDEY-GVVFLQGGSSL   79 (364)
T ss_pred             CCCCCCCCCCC--CCCHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCC-EEEEECCCHHH
T ss_conf             67621588864--4899999999999860568970278506688889999999999999985899982-79995681789


Q ss_pred             -CCCCCCCCCCCCCCC--CCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCC--CHHHHHHCCCCCCCCCEEECCCCC-
Q ss_conf             -322222223322322--223333232--222222222222222222223222--103331000122122012113542-
Q gi|254780602|r  104 -IFNALMATVNMGDEV--LIPRPYWVS--YPDMVALCGGIPVFVDTQQDDNFQ--VSPEKLEQAITPKTKWLFLNSPSN-  175 (400)
Q Consensus       104 -l~~~~~~~~~~Gd~V--lv~~P~y~~--y~~~~~~~g~~~~~v~~~~~~~~~--~d~~~l~~~i~~~~k~i~l~nP~N-  175 (400)
                       ...+-..++++++..  .+.+=.|..  +....+....+  .+...++.+|.  |+.+++  .+.+++..+.+|+ || 
T Consensus        80 qf~~ip~Nll~~~~~~a~y~~tG~WS~kA~~EA~k~~~~~--~~~~~~~~~~~~iP~~~~~--~~~~~~~y~h~t~-NeT  154 (364)
T PRK12462         80 QFSMIPMNFSRPGAAAPEYVTTGYWSRKAIGEASRVAAMR--VVWDGAASGYRTLPSLAAL--DWDARAPFRHYVS-NET  154 (364)
T ss_pred             HHHHHHHHCCCCCCCCCEEEECCHHHHHHHHHHHHHCCEE--EEECCCCCCCCCCCCHHHC--CCCCCCCEEEECC-CCC
T ss_conf             9999986375678852349962786899999999758914--8623566888646774322--7788844698625-774


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHH
Q ss_conf             10000123333211122333332011101221100000122332221112333225741465443223445444221101
Q gi|254780602|r  176 PSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTGLRIGYAAGAL  255 (400)
Q Consensus       176 PTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~v~~~  255 (400)
                      =+|..++     +..+    ..+..+|+|-. +++          .+..-+...-.++..|.-|.+|.+|  +..++..+
T Consensus       155 i~Gvq~~-----~~~~----~~~~plV~DmS-S~~----------lsrpiD~s~~~viYagaQKN~G~aG--~tvvIir~  212 (364)
T PRK12462        155 VEGLQFP-----DAAD----LPDSPLIADMS-SDF----------MSRPFDVRAYGMVYAHAQKNLGPAG--VTVAIIRR  212 (364)
T ss_pred             CCCEEEC-----CCCC----CCCCEEEEECC-HHH----------HCCCCCHHHEEEEEEECCCCCCCCC--EEEEEECH
T ss_conf             2332415-----6789----99973887346-065----------1676567790389986211256666--18999879


Q ss_pred             HHHHHHHH-------HCC----CCCC-CCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEE--E
Q ss_conf             22687531-------001----2223-32222222222---223467643222222110000000245530477603--3
Q gi|254780602|r  256 SLIKSMIV-------LQG----QQTS-GACSIAQWAAV---EALNGPQDFVVNNRKIFEYRRDLCVAQLQGVPGIRY--M  318 (400)
Q Consensus       256 ~li~~l~~-------~~~----~~~~-~~~~~~q~a~~---~~l~~~~~~~~~~~~~~~~~r~~~~~~L~~~~g~~~--~  318 (400)
                      +++++...       ++.    .... .|+++..+++.   +++...-..++.+.++-+++.+.+++.+.+..++-.  .
T Consensus       213 dll~~~~~~iP~~ldy~~~~~~~S~yNTPp~f~Iy~~~lvl~Wl~~~~GGl~~~~~~n~~Ka~~LY~~iD~s~~fy~~~v  292 (364)
T PRK12462        213 ALLERVPDTLPPMLDFRTHVEHRSNYNTPPVFAIYVMALVLRWIRDEIGGVHAMRDINARKAAMLYATLDALNEVIDCHA  292 (364)
T ss_pred             HHHCCCCCCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCEECCCC
T ss_conf             99616220386402188898608878894269999999999999862135589999999999999999971878766889


Q ss_pred             ECC--CCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCCCCEEEEEE--ECCHHHHHHHHHHHHH
Q ss_conf             027--408998626410233211332248989999999987397998350228997289996--2999999999999999
Q gi|254780602|r  319 IPD--GAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGHGPSIRISY--AVSDAILEEACVRIKR  394 (400)
Q Consensus       319 ~p~--g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~iRis~--~~~~e~l~~al~rl~~  394 (400)
                      .++  ..+-+-..+.           ....+..|.... ++.|+.-.-|+.-  =|.+|+|+  +.+.|.++.-++=|++
T Consensus       293 ~~~~RS~mNv~F~~~-----------~~~l~~~Fl~~a-~~~Gl~~lkGhRs--vGG~RaSlYNa~~~e~V~~L~~fM~~  358 (364)
T PRK12462        293 HRAARSTMNVAFRFR-----------QPRLDTLFKEQS-TEAGFCGLSGHRS--IGGIRASLYNAVSEQAVSRLCAFLKD  358 (364)
T ss_pred             CCCCCCCEEEEEECC-----------CHHHHHHHHHHH-HHCCCCCCCCCCC--CCCCEEECCCCCCHHHHHHHHHHHHH
T ss_conf             846588588468149-----------766789999999-9879866518871--14526771179999999999999999


Q ss_pred             HHHH
Q ss_conf             9986
Q gi|254780602|r  395 FCHS  398 (400)
Q Consensus       395 ~l~~  398 (400)
                      |-.+
T Consensus       359 F~~~  362 (364)
T PRK12462        359 FAIR  362 (364)
T ss_pred             HHHH
T ss_conf             9985


No 334
>TIGR00474 selA L-seryl-tRNA selenium transferase; InterPro: IPR004534 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation.   This family describes SelA. A close homolog of SelA is found in Helicobacter pylori, but all other required elements are missing and the protein is shorter at the N-terminus than SelA from other species. The trusted cut-off is set above the score generated for Helicobacter pyloriputative SelA.; GO: 0004125 L-seryl-tRNASec selenium transferase activity, 0001514 selenocysteine incorporation, 0005737 cytoplasm.
Probab=97.79  E-value=3.5e-05  Score=51.65  Aligned_cols=262  Identities=20%  Similarity=0.196  Sum_probs=154.8

Q ss_pred             EEECCCCCCCCCCCHHHHHHHHHHHHCCC-CCCCCCCCCHHHH-HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             26656589749889999999999983887-5699877898999-999998642101333322332334543333222222
Q gi|254780602|r   33 VLCLTAGEPDFDMPENVKYAVVRAMERGE-TKYTAVAGISPLR-EAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFNALMA  110 (400)
Q Consensus        33 ii~l~~G~p~~~~p~~i~~a~~~al~~~~-~~Y~~~~G~~~lR-~aia~~~~~~~g~~~~~e~I~it~G~~~~l~~~~~~  110 (400)
                      |++-.+|---|  .+.+.+++.++++... +-|.--.|--.-| ..|++++.+..|   ..+..++.|-+.. ..+++.+
T Consensus        69 vLnTnlGra~~--ae~v~~a~~~~~~~~v~LEY~L~~~gRG~R~~~i~~lLc~lTg---ae~~cvvnNna~a-vlL~l~~  142 (448)
T TIGR00474        69 VLNTNLGRALF--AEAVNEAISEAMRKYVNLEYDLDEGGRGHRDAHIEKLLCKLTG---AEDACVVNNNAAA-VLLMLAT  142 (448)
T ss_pred             EEEHHHCCHHH--HHHHHHHHHHHHCCCCCCCEECCCCCCCHHHHHHHHHHHHHCC---CCCCEEEECHHHH-HHHHHHH
T ss_conf             65300144367--9999999999862577531102115753178999999875328---6233044233899-9999999


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCC------CCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEECCCCCC--CCCCCC
Q ss_conf             23322322223333232222222------2222222222222232221033310001221220121135421--000012
Q gi|254780602|r  111 TVNMGDEVLIPRPYWVSYPDMVA------LCGGIPVFVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNP--SGVVYS  182 (400)
Q Consensus       111 ~~~~Gd~Vlv~~P~y~~y~~~~~------~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~k~i~l~nP~NP--TG~v~s  182 (400)
                      +. .|-+||+..|-=+.+.++.+      ..|+....|=....    --..+.+.+|+++|-.+..++-+|=  .|.+-.
T Consensus       143 ~a-~GKeVi~srGEL~eiGg~fRipdim~~~g~~l~eVGttn~----t~~~Dy~~ai~~nTa~Lmkvh~sNf~~~gft~~  217 (448)
T TIGR00474       143 LA-KGKEVIISRGELVEIGGAFRIPDIMKQAGCELDEVGTTNR----THVKDYRVAITENTALLMKVHLSNFKIVGFTAK  217 (448)
T ss_pred             HC-CCCEEEEECCCCCCCCCCCCCHHHHHHCCCEEEECCCHHH----HHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCC
T ss_conf             60-7987999788657898756544889653856510110120----004467776531034444443016625652111


Q ss_pred             CCCCCCCCCCCCCCCCCEEECCCCCCCCC--------CCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCH
Q ss_conf             33332111223333320111012211000--------0012233222111233322574146544322344544422110
Q gi|254780602|r  183 QNRLRALADVLVRNPHVHIISDDIYEHIV--------YRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTGLRIGYAAGA  254 (400)
Q Consensus       183 ~~~l~~i~~~~a~~~~i~ii~De~Y~~l~--------~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~v~~  254 (400)
                      . ..++|+++ =++.|+.++.|+.=+.|+        ++++.+....+.  +   --++..|.-|-+  -|-|-|-+||-
T Consensus       218 ~-~eeeLv~L-G~~~~~pv~~D~gSG~LvdL~~~gL~~~eP~~~~~i~~--G---~dLVs~SgDKLL--gGpqaGiivGK  288 (448)
T TIGR00474       218 V-KEEELVKL-GKELDVPVVTDLGSGLLVDLSQYGLPKNEPNVQEAIAL--G---VDLVSFSGDKLL--GGPQAGIIVGK  288 (448)
T ss_pred             C-CHHHHHHH-HHHCCCEEEEECCCCCHHHHHHCCCCCCCCCCCHHHHC--C---CCEEECCCCCCC--CCCCCCEEECC
T ss_conf             5-77899973-22337707998776621225441666688971068866--9---857861651004--67650346230


Q ss_pred             HHHHHHHHHHCCCCCCCC--CCCCC-CCCCCCCCCCCCCCCCCC---------CCCCCCCCCHHHHHHCCCC
Q ss_conf             122687531001222332--22222-222222346764322222---------2110000000245530477
Q gi|254780602|r  255 LSLIKSMIVLQGQQTSGA--CSIAQ-WAAVEALNGPQDFVVNNR---------KIFEYRRDLCVAQLQGVPG  314 (400)
Q Consensus       255 ~~li~~l~~~~~~~~~~~--~~~~q-~a~~~~l~~~~~~~~~~~---------~~~~~~r~~~~~~L~~~~g  314 (400)
                      +++|+++..---....-+  ..++. .+++..+.+++...++.+         +..+.+.+.+.+.|+.++|
T Consensus       289 Keli~ki~~~p~kr~Lr~dk~~LAGle~tLkly~~PEkl~E~ip~lr~ltr~~~~~~~~a~rL~~~L~~~~~  360 (448)
T TIGR00474       289 KELIEKIQIHPLKRALRADKLTLAGLEATLKLYLNPEKLLEKIPTLRLLTRAKKFLRIKAERLEKELKAIDG  360 (448)
T ss_pred             HHHHHHHHHCCCCEEHHCCHHHHHHHHHHHHHHCCHHHHCCCCHHHHHHCCHHHHHHHHHHHHHHHHCCCCC
T ss_conf             789999854786221012416799999999741580243044215565303488999999998887503568


No 335
>TIGR00709 dat 2,4-diaminobutyrate 4-transaminase; InterPro: IPR004637 This is a very small family, with two known examples at the time of model creation. This enzyme is a pyridoxal phosphate-containing class III aminotransferase and is quite similar to 4-aminobutyrate aminotransferase (2.6.1.19 from EC). Diaminobutyrate-2-oxoglutarate transaminase (2.6.1.76 from EC) is a homotetramer which catalyses the conversion of L-2,4-diaminobutyrate and 2-oxoglutarate to L-glutamate and L-aspartic 4-semialdehyde during 1,3-diaminopropane biosynthesis.; GO: 0008483 transaminase activity, 0009058 biosynthetic process.
Probab=97.78  E-value=0.0011  Score=42.41  Aligned_cols=319  Identities=18%  Similarity=0.239  Sum_probs=156.3

Q ss_pred             HHHHHHHHHHHHCCC-----CCCCCCCCCHHHHHHH--HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CC----
Q ss_conf             999999999983887-----5699877898999999--99864210133332233233454333322222223-32----
Q gi|254780602|r   47 ENVKYAVVRAMERGE-----TKYTAVAGISPLREAI--VEKFRRDNDLHYTSDQIIVGTGAKHVIFNALMATV-NM----  114 (400)
Q Consensus        47 ~~i~~a~~~al~~~~-----~~Y~~~~G~~~lR~ai--a~~~~~~~g~~~~~e~I~it~G~~~~l~~~~~~~~-~~----  114 (400)
                      ....|++...+..+.     .+++.+.|-...-.||  |+.|.   |    -.+|+-.+|+-+|+..-.++++ |.    
T Consensus        85 ~~F~~~l~~~~~~~r~~~Y~l~F~GP~GA~a~EaA~KLA~~~T---G----R~~visF~~GfHGMT~GaLa~TGN~~~~N  157 (445)
T TIGR00709        85 DAFIEALLNILPKPRKEDYKLQFPGPSGADAVEAAIKLAKTYT---G----RTNVISFSGGFHGMTIGALALTGNLFAKN  157 (445)
T ss_pred             HHHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHHHCC---C----CCEEEEECCCCCHHHHHHHHHHCCCHHHC
T ss_conf             7899999997068877631787188898535789999743117---8----70047633885101221366522420001


Q ss_pred             CCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCH-------HHHHHCCCCCCCCCEEECCCCCCCCCC-CCCCC
Q ss_conf             23222233332322222222-2222222222222322210-------333100012212201211354210000-12333
Q gi|254780602|r  115 GDEVLIPRPYWVSYPDMVAL-CGGIPVFVDTQQDDNFQVS-------PEKLEQAITPKTKWLFLNSPSNPSGVV-YSQNR  185 (400)
Q Consensus       115 Gd~Vlv~~P~y~~y~~~~~~-~g~~~~~v~~~~~~~~~~d-------~~~l~~~i~~~~k~i~l~nP~NPTG~v-~s~~~  185 (400)
                      +-..+++.-.+-+|.+..+- .|       +.-|.|-.-.       +|+.++-+ .|+-+++|-.=+==-|.+ -|.+.
T Consensus       158 a~~~~~~~~~~~PY~~~~~~P~G-------~GGeaG~~~~~~Y~ENF~~~~~SG~-~KPAA~I~E~iQGEGG~~~A~~~w  229 (445)
T TIGR00709       158 AVEMLLPGVQFLPYPHEYRCPLG-------LGGEAGSNAVIEYFENFIEDVESGV-DKPAAVILEAIQGEGGVVAAPVEW  229 (445)
T ss_pred             CCCCCCCCCCCCCCCHHHCCCCC-------CCCHHHHHHHHHHHHHHHHCCCCCC-CCCEEEEEEEEECCCCCCHHHHHH
T ss_conf             24556777622788423247666-------7703446789999877541366776-576046886330788510224799


Q ss_pred             CCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCC--CCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             32111223333320111012211000001223322--2111233322574146544322344544422110122687531
Q gi|254780602|r  186 LRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNI--VNVEPSLYERTLVVNGVSKAYAMTGLRIGYAAGALSLIKSMIV  263 (400)
Q Consensus       186 l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~--~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~v~~~~li~~l~~  263 (400)
                      |++|-++| ++++|.+|.||+-..+.=.|. +-++  +.+.|+     +++  +||+.|--|+-++.+...+++ +++.-
T Consensus       230 L~~i~~v~-~~~~I~lIlD~VQAG~~R~G~-~FaFE~AGI~PD-----~v~--~SKavGGng~PLAv~~i~~~f-D~~~P  299 (445)
T TIGR00709       230 LQKIREVT-RKHDIKLILDEVQAGFGRSGK-MFAFEHAGIEPD-----VVV--LSKAVGGNGLPLAVLLIKKEF-DAWQP  299 (445)
T ss_pred             HHHHHHHH-HHCCCEEEEECCCCCCCCCCC-CEEECCCCCCCC-----EEE--EECCCCCCCHHHHHHHHHHHC-CCCCC
T ss_conf             99999987-427847998223457012555-110024789867-----689--830338885068887763430-45688


Q ss_pred             HCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCHHHHH----HCCCCCEEEE-CCCCEEEEEECCCCCCCC
Q ss_conf             001222332222222222223467-6432222221100000002455----3047760330-274089986264102332
Q gi|254780602|r  264 LQGQQTSGACSIAQWAAVEALNGP-QDFVVNNRKIFEYRRDLCVAQL----QGVPGIRYMI-PDGAFYLYPSCQDLIGKK  337 (400)
Q Consensus       264 ~~~~~~~~~~~~~q~a~~~~l~~~-~~~~~~~~~~~~~~r~~~~~~L----~~~~g~~~~~-p~g~~y~~~~~~~~~~~~  337 (400)
                      .-...++.-+.+...-...+|+.. ++-++++.+   +|-+++...|    ++.|.+.-++ .. ||..=+++.+-....
T Consensus       300 a~H~GTFRGN~lA~~TG~~~L~~~kd~~L~~N~Q---E~~E~~t~~L~~~~K~~P~~~~VRkGR-GlM~Gi~~~~E~~~~  375 (445)
T TIGR00709       300 AGHTGTFRGNQLAMVTGLEALNIIKDDNLAQNAQ---ERGERITSFLDDLIKEYPCIGNVRKGR-GLMIGIEIVDERKSK  375 (445)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHCCCCCCCCCCC-CEEECCCCCCCCCCC
T ss_conf             9866554301578888899999888766765554---446789999999987378547620566-335413210257742


Q ss_pred             CCCCCCCCCHHHHHHHHHH---HCCEEEECCCCCCCC-CEEEEEE--ECCHHHHHHHHHHHHHHHHH
Q ss_conf             1133224898999999998---739799835022899-7289996--29999999999999999986
Q gi|254780602|r  338 SPSGDVIRTDLDFVNGLLE---IEKVAVVQGSSFGHG-PSIRISY--AVSDAILEEACVRIKRFCHS  398 (400)
Q Consensus       338 ~~~~~~~~~~~~~~~~Ll~---~~gV~v~pG~~Fg~~-~~iRis~--~~~~e~l~~al~rl~~~l~~  398 (400)
                      +..+....| .+++..+..   ++++++--|   |.+ .=||+-+  ..+.+++++.+.|+++.++.
T Consensus       376 D~~G~~P~D-~~LA~~I~~~CF~~~LllE~~---G~~~~V~~ll~p~~I~~~~~~~~~~~~~~av~e  438 (445)
T TIGR00709       376 DAIGAYPAD-SELAAAIQGACFENGLLLEKG---GREGEVVRLLCPITIDQEELEEVISRLKQAVEE  438 (445)
T ss_pred             CCCCCCCCH-HHHHHHHHHHHHCCCCEEEEC---CCCCCEEEEECCEEECHHHHHHHHHHHHHHHHH
T ss_conf             224788621-489999986322057334306---899736897066032456689999999999999


No 336
>PRK05355 phosphoserine aminotransferase; Provisional
Probab=97.77  E-value=0.00047  Score=44.74  Aligned_cols=324  Identities=14%  Similarity=0.129  Sum_probs=152.2

Q ss_pred             CEEECCCCCCCCCCCHHHHHHHHHHHHC-CCCCC-----CC-CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCC-CCCC
Q ss_conf             7266565897498899999999999838-87569-----98-778989999999986421013333223323345-4333
Q gi|254780602|r   32 DVLCLTAGEPDFDMPENVKYAVVRAMER-GETKY-----TA-VAGISPLREAIVEKFRRDNDLHYTSDQIIVGTG-AKHV  103 (400)
Q Consensus        32 ~ii~l~~G~p~~~~p~~i~~a~~~al~~-~~~~Y-----~~-~~G~~~lR~aia~~~~~~~g~~~~~e~I~it~G-~~~~  103 (400)
                      .++||+.|-.  ..|+.|++.+++.+-+ ...|.     .. +.-..++-+..-+.+++..+++=+- +|++..| ++.-
T Consensus         3 r~~NF~aGPa--~LP~~Vl~~~~~e~~~~~g~G~silEiSHRs~~f~~i~~~a~~~lr~Ll~iPd~Y-eVlflqGGat~q   79 (360)
T PRK05355          3 RVYNFSAGPA--MLPEEVLEQAQQELLDWNGSGMSVMEISHRSKEFIAVAEEAEADLRELLNIPDNY-KVLFLQGGASLQ   79 (360)
T ss_pred             CCCCCCCCCC--CCCHHHHHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCC-EEEEECCCHHHH
T ss_conf             8511788854--3899999999999860258886057545588889999999999999984899981-899957845899


Q ss_pred             CCCCCCCCCCCCCCCCCCC-CCCCC--CCCCCCCCCCCCCCCCCCCCCCCC--CHHHHHHCCCCCCCCCEEECCCCC-CC
Q ss_conf             3222222233223222233-33232--222222222222222222223222--103331000122122012113542-10
Q gi|254780602|r  104 IFNALMATVNMGDEVLIPR-PYWVS--YPDMVALCGGIPVFVDTQQDDNFQ--VSPEKLEQAITPKTKWLFLNSPSN-PS  177 (400)
Q Consensus       104 l~~~~~~~~~~Gd~Vlv~~-P~y~~--y~~~~~~~g~~~~~v~~~~~~~~~--~d~~~l~~~i~~~~k~i~l~nP~N-PT  177 (400)
                      ...+...++.+++..-... =.|..  +..+ ...| .+..+-..++.+|.  |+.++.  .+.+...-+.+|+ || =+
T Consensus        80 F~~ip~Nll~~~~~a~y~~tG~Ws~KA~~EA-~~~~-~~~v~~~~~~~~~~~iP~~~~~--~~~~~~~Y~h~t~-NETi~  154 (360)
T PRK05355         80 FAMVPLNLLGKGGKADYVVTGSWSKKAIKEA-KKYG-EVNVAASSEDDGFTYIPPLDEW--QLSDDAAYVHYTP-NETID  154 (360)
T ss_pred             HHHHHHHCCCCCCEEEEEECCHHHHHHHHHH-HHHC-CCCEECCCCCCCCCCCCCHHHC--CCCCCCCEEEECC-CCCCC
T ss_conf             9999874678898023895388899999973-7616-8732013466777558986652--7797756799714-77501


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf             00012333321112233333201110122110000012233222111233322574146544322344544422110122
Q gi|254780602|r  178 GVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTGLRIGYAAGALSL  257 (400)
Q Consensus       178 G~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~v~~~~l  257 (400)
                      |..+..     +-    +..++.+|+|-. +++.  ..+ .       +..+-.++..|.-|.+|.+|  +..++..+++
T Consensus       155 Gv~~~~-----~P----~~~~~pLV~DmS-S~~l--srp-i-------D~~~~d~iYagaQKNlGpaG--vtvvIvr~~l  212 (360)
T PRK05355        155 GTEIHE-----LP----DTGDVPLVADMS-SDIL--SRP-I-------DVSKFGLIYAGAQKNIGPAG--LTIVIVREDL  212 (360)
T ss_pred             CEEECC-----CC----CCCCCCEEEECC-CCCC--CCC-C-------CHHHCCEEEEECCCCCCCCC--CEEEEEEHHH
T ss_conf             046101-----36----668984799734-5434--776-7-------77891579987433578765--1899975999


Q ss_pred             HHHHHH-------HCC----CCCC-CCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEE-ECC
Q ss_conf             687531-------001----2223-32222222222---2234676432222221100000002455304776033-027
Q gi|254780602|r  258 IKSMIV-------LQG----QQTS-GACSIAQWAAV---EALNGPQDFVVNNRKIFEYRRDLCVAQLQGVPGIRYM-IPD  321 (400)
Q Consensus       258 i~~l~~-------~~~----~~~~-~~~~~~q~a~~---~~l~~~~~~~~~~~~~~~~~r~~~~~~L~~~~g~~~~-~p~  321 (400)
                      +++-.+       ++.    .... .|+.+..+++.   +|+. .+.-++.+.++-+++.+.+++.+.+.+-.+.. .|+
T Consensus       213 l~~~~~~iP~~l~y~~~~~~~Sl~NTPp~f~iy~~~lvl~Wl~-~~GGl~~~~~~n~~KA~lLY~~iD~s~fy~~~v~~~  291 (360)
T PRK05355        213 LGRALPNIPSMLDYKTHADNDSMYNTPPTFAIYLAGLVFKWLK-EQGGVAAIEKRNQEKAALLYDAIDSSDFYRNPVAPE  291 (360)
T ss_pred             HHCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHH
T ss_conf             6223668960530999986367666884289999999999998-617699999999998999999986078635889856


Q ss_pred             CCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCCCCEEEEEE--ECCHHHHHHHHHHHHHHHHH
Q ss_conf             408998626410233211332248989999999987397998350228997289996--29999999999999999986
Q gi|254780602|r  322 GAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGHGPSIRISY--AVSDAILEEACVRIKRFCHS  398 (400)
Q Consensus       322 g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~iRis~--~~~~e~l~~al~rl~~~l~~  398 (400)
                              .....+..... .....+..|... +++.|+.-.-|+.  .-|.+|+|+  +.+.|.++.-++=|++|-++
T Consensus       292 --------~RS~mNV~F~~-~~~~l~~~Fl~~-a~~~Gl~~LkGhR--svGG~RaSlYNa~~~e~V~~L~~fm~~F~~~  358 (360)
T PRK05355        292 --------NRSRMNVPFTL-ADEELDKKFLAE-AEAAGLVGLKGHR--SVGGMRASIYNAMPLEGVQALVDFMKEFEKR  358 (360)
T ss_pred             --------HCCCCEEEEEC-CCHHHHHHHHHH-HHHCCCCCCCCCC--CCCCEEEEECCCCCHHHHHHHHHHHHHHHHH
T ss_conf             --------56865447871-877789999999-9987986666876--5385278801799999999999999999996


No 337
>COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism]
Probab=97.76  E-value=8.1e-05  Score=49.39  Aligned_cols=275  Identities=18%  Similarity=0.187  Sum_probs=137.0

Q ss_pred             HHHHHHHHHHHCCCCEEEC-CCCCCCCCCCHHHHHHHHHHHHCCC--CCCCCCCCCHHHH----HHHHHH---HHHHCCC
Q ss_conf             9999999999869972665-6589749889999999999983887--5699877898999----999998---6421013
Q gi|254780602|r   18 VAAQRVRDLRSKGIDVLCL-TAGEPDFDMPENVKYAVVRAMERGE--TKYTAVAGISPLR----EAIVEK---FRRDNDL   87 (400)
Q Consensus        18 ~~~~~~~~~~~~g~~ii~l-~~G~p~~~~p~~i~~a~~~al~~~~--~~Y~~~~G~~~lR----~aia~~---~~~~~g~   87 (400)
                      ++..+.++..+++++..+| +.|-=+.-+|+.|...+.   +++.  +.|+|-|  ||.-    |++-+|   .....|+
T Consensus        61 e~l~~l~~ia~kN~~~~sfiG~GyY~~~~P~vI~rnil---e~pewyTaYTPYQ--pEISQGrLqaLfefQtlv~dLTGm  135 (450)
T COG0403          61 EALAELKEIASKNKVFTSFIGAGYYDTYTPPVILRNIL---ENPEWYTAYTPYQ--PEISQGRLEALFEFQTLVADLTGL  135 (450)
T ss_pred             HHHHHHHHHHHCCCHHHHHCCCCCCCCCCCHHHHHHHH---CCCCCCCCCCCCC--HHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             99999999987066145425686468718278888764---3854223678886--366657999999899999998588


Q ss_pred             CCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----CCCCCCCCCCCCCCCCCCCHHHHHHCCCC
Q ss_conf             333223323-3454333322222223322322223333232222222----22222222222222322210333100012
Q gi|254780602|r   88 HYTSDQIIV-GTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDMVA----LCGGIPVFVDTQQDDNFQVSPEKLEQAIT  162 (400)
Q Consensus        88 ~~~~e~I~i-t~G~~~~l~~~~~~~~~~Gd~Vlv~~P~y~~y~~~~~----~~g~~~~~v~~~~~~~~~~d~~~l~~~i~  162 (400)
                      ++......= .+.+.+|+.++.+.--.+..+++|+.-.+|.+....+    -.|.+++.++.+       |.++++++..
T Consensus       136 ~VANASm~DeaTAaAEAm~ma~r~~k~k~~~~~V~~~vhpqt~~Vl~Tra~~~g~~i~~~~~~-------d~~~l~~~~~  208 (450)
T COG0403         136 DVANASMLDEATAAAEAMLMAKRVTKKKRNKFLVPKDVHPQTLDVLRTRAEGLGIEIEVVDAD-------DLDDLESADD  208 (450)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHCCCCCEEEEEECCC-------HHHHHHHCCC
T ss_conf             744500231676999999999874147673499668868779999986112576399995642-------2556653246


Q ss_pred             CCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCC
Q ss_conf             21220121135421000012333321112233333201110122110000012233222111233322574146544322
Q gi|254780602|r  163 PKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYA  242 (400)
Q Consensus       163 ~~~k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~  242 (400)
                      ..+-++++-+|+ -.|.  ...++++|.+.+ +.++.++++   +.+..     .-.++. .|+-+.--|++++.. .||
T Consensus       209 ~~~~gv~vQyP~-~~G~--~~~d~~~l~~~~-h~~~al~~v---~aDpl-----aL~LL~-pPGe~GADIvvG~~Q-rfG  274 (450)
T COG0403         209 GDVFGVLVQYPN-TFGI--VEEDLRALIEAA-HSAGALVIV---AADPL-----ALGLLK-PPGEFGADIVVGSAQ-RFG  274 (450)
T ss_pred             CCEEEEEEECCC-CCCC--CCHHHHHHHHHH-HHCCCEEEE---EECHH-----HHHCCC-CCCCCCCCEEEECCC-CCC
T ss_conf             773799997688-8773--414099999998-635977999---82636-----764557-841037866973376-047


Q ss_pred             CC----CCCCCCCCCHHHHHHHHH----------------------------HHCCCCCCCCCCCCCC--CCCCCCCCCC
Q ss_conf             34----454442211012268753----------------------------1001222332222222--2222234676
Q gi|254780602|r  243 MT----GLRIGYAAGALSLIKSMI----------------------------VLQGQQTSGACSIAQW--AAVEALNGPQ  288 (400)
Q Consensus       243 ~~----G~RiG~~v~~~~li~~l~----------------------------~~~~~~~~~~~~~~q~--a~~~~l~~~~  288 (400)
                      +|    |-.+||....+++.+++-                            +-+...++|.+-..-.  ++..+--++.
T Consensus       275 vPmgfGGPhag~fA~~~~~~R~mPGRlVG~S~D~~G~~A~rLaLQTREQHIRReKATSNICTnQaLlA~~As~y~~~hGp  354 (450)
T COG0403         275 VPMGFGGPHAGYFAVKDEFKRQMPGRLVGVSVDAAGKRAFRLALQTREQHIRREKATSNICTNQALLALAASMYAVYHGP  354 (450)
T ss_pred             CCCCCCCCCEEEEEEHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCH
T ss_conf             77678875632223758674259984330464589980320128778888764001015548999999999999998696


Q ss_pred             CCCCCCCCCCCCCCCCHHHHHHCCC-CCEEE
Q ss_conf             4322222211000000024553047-76033
Q gi|254780602|r  289 DFVVNNRKIFEYRRDLCVAQLQGVP-GIRYM  318 (400)
Q Consensus       289 ~~~~~~~~~~~~~r~~~~~~L~~~~-g~~~~  318 (400)
                      +-+.++..+..+...++.+.|+++. |+++.
T Consensus       355 ~GLk~iA~r~~~~a~~la~~L~~~~~g~~~~  385 (450)
T COG0403         355 QGLKEIAERIHRLAAYLAAGLKEIGAGVELV  385 (450)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCEEEC
T ss_conf             8899999999999999999876458864751


No 338
>PRK12566 glycine dehydrogenase; Provisional
Probab=97.75  E-value=0.00048  Score=44.69  Aligned_cols=328  Identities=13%  Similarity=0.095  Sum_probs=152.5

Q ss_pred             HHHHHHHHHHHHHCCCCEEEC-CCCCCCCCCCHHHHHHHHHHHHCC-C-CCCCCCCCCHHHH----HHHHHH---HHHHC
Q ss_conf             999999999999869972665-658974988999999999998388-7-5699877898999----999998---64210
Q gi|254780602|r   16 TLVAAQRVRDLRSKGIDVLCL-TAGEPDFDMPENVKYAVVRAMERG-E-TKYTAVAGISPLR----EAIVEK---FRRDN   85 (400)
Q Consensus        16 ~~~~~~~~~~~~~~g~~ii~l-~~G~p~~~~p~~i~~a~~~al~~~-~-~~Y~~~~G~~~lR----~aia~~---~~~~~   85 (400)
                      -.++.+..+++.++++..-+| +.|.-+.-+|+.|+..+.   +++ . +.|+|-|  ||.-    |++-+|   .....
T Consensus        63 E~e~l~~l~~ia~kN~~~~sfIG~Gyy~t~tP~vI~Rnvl---enp~wyTaYTPYQ--pEISQGrLeaL~nfQTmi~dLT  137 (954)
T PRK12566         63 EQAALARLRGYAEQNQVWTSLIGMGYHGTVTPTVILRNVL---ENPGWYTAYTPYQ--PEIAQGRLEALLNFQQMTIDLT  137 (954)
T ss_pred             HHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCHHHHHHHH---CCCCCCCCCCCCC--HHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999999997378642230177678847567777530---4887504779986--4676699999999999999987


Q ss_pred             CCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCC
Q ss_conf             13333223323-34543333222222233223222233332322222222222222222222232221033310001221
Q gi|254780602|r   86 DLHYTSDQIIV-GTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQAITPK  164 (400)
Q Consensus        86 g~~~~~e~I~i-t~G~~~~l~~~~~~~~~~Gd~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~  164 (400)
                      |+++.--.++= .+-+.+|+.++.+.--++.++++|..-.+|.+...++. .+++..+.+..     -+++++   ....
T Consensus       138 Gm~vaNASllDeaTAaAEAm~ma~r~~k~k~~~~~V~~~~~Pqt~~Vl~t-ra~~~gie~vv-----~~~~~~---~~~~  208 (954)
T PRK12566        138 GLDLANASLLDEATAAAEAMALAKRVAKSKSNRFFVDEHCHPQTLSVLKT-RAEGFGFELVV-----DEVDNL---AQHA  208 (954)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHH-CCCCCCCEEEE-----CCHHHC---CCCC
T ss_conf             87600576000899999999998987536888799889878889999996-03357957996-----386766---7667


Q ss_pred             CCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECC-CCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCC
Q ss_conf             2201211354210000123333211122333332011101-221100000122332221112333225741465443223
Q gi|254780602|r  165 TKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISD-DIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAM  243 (400)
Q Consensus       165 ~k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~D-e~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~~  243 (400)
                      +-++++-+| |-.|.+.+   +..+++.+ +..+.+++.. |.   +...--+  +     |+-..--|+++|. -.||+
T Consensus       209 ~~gvlvqyP-~~~G~i~d---~~~~~~~a-h~~gal~iv~~D~---laL~lLk--~-----PGe~GADIavG~~-QrfGv  272 (954)
T PRK12566        209 VFGALLQYP-DTHGEVRD---LRPLIDQL-HGQQALACVAADL---LSLLLLT--P-----PGELGADVVLGST-QRFGV  272 (954)
T ss_pred             EEEEEEECC-CCCCCCCC---CHHHHHHH-HHCCCEEEEEHHH---HHHHCCC--C-----HHHCCCCEEEEEC-CCCCC
T ss_conf             589999789-98876147---56789877-3459289986567---6877049--8-----3441875798406-63676


Q ss_pred             C----CCCCCCCCCHHHHHHHH----------------------------HHHCCCCCCCCCCCCCC--CCCCCCCCCCC
Q ss_conf             4----45444221101226875----------------------------31001222332222222--22222346764
Q gi|254780602|r  244 T----GLRIGYAAGALSLIKSM----------------------------IVLQGQQTSGACSIAQW--AAVEALNGPQD  289 (400)
Q Consensus       244 ~----G~RiG~~v~~~~li~~l----------------------------~~~~~~~~~~~~~~~q~--a~~~~l~~~~~  289 (400)
                      |    |-..||+...+++.+.+                            ++-+....+|.+-..-.  ++..+.-++.+
T Consensus       273 PmgfGGPhagffAtr~~~kR~mPGRiVGvS~D~~G~~a~rlaLQTREQHIRReKATSNICTaQaLLA~mAamYAvYHGPe  352 (954)
T PRK12566        273 PMGYGGPHAAFFACRDDYKRAMPGRIIGVSRDARGNTALRMALQTREQHIRREKANSNICTAQVLLANIAGFYAVYHGPE  352 (954)
T ss_pred             CCCCCCCCEEEEEEHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCHH
T ss_conf             55678875023357244653599743403777997951322133689999862010000277899999999999871999


Q ss_pred             CCCCCCCCCCCCCCCHHHHHHCCCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCC
Q ss_conf             32222221100000002455304776033027408998626410233211332248989999999987397998350228
Q gi|254780602|r  290 FVVNNRKIFEYRRDLCVAQLQGVPGIRYMIPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFG  369 (400)
Q Consensus       290 ~~~~~~~~~~~~r~~~~~~L~~~~g~~~~~p~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg  369 (400)
                      -+.+..++.......+.+.|+.. |+++.  ...||=-+.+..           .....++..+ ..+.|+-+.-    -
T Consensus       353 GLk~IA~rih~~a~~la~~L~~~-G~~v~--~~~fFDTl~v~~-----------~~~~~~i~~~-A~~~~iNlR~----~  413 (954)
T PRK12566        353 GLKRIAQRVHRLTAILAAGLEAK-GIKRL--NRHFFDTLTLEV-----------GGAQAAIIES-AEAAQINLRI----L  413 (954)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHC-CCEEC--CCCEEEEEEEEC-----------CCCHHHHHHH-HHHCCCEEEE----E
T ss_conf             99999999999999999999877-97125--786156799964-----------8649999999-9977974787----1


Q ss_pred             CCCEEEEEEE--CCHHHHHHHHHHH
Q ss_conf             9972899962--9999999999999
Q gi|254780602|r  370 HGPSIRISYA--VSDAILEEACVRI  392 (400)
Q Consensus       370 ~~~~iRis~~--~~~e~l~~al~rl  392 (400)
                      .++.|.||+.  ++.+++..-+..+
T Consensus       414 d~~~vgISlDEttt~~dl~~Ll~vF  438 (954)
T PRK12566        414 GRGRLGLSLDETCDEATVARLFDIF  438 (954)
T ss_pred             CCCEEEEEECCCCCHHHHHHHHHHH
T ss_conf             6997999805668899999999998


No 339
>COG3844 Kynureninase [Amino acid transport and metabolism]
Probab=97.74  E-value=0.0014  Score=41.91  Aligned_cols=333  Identities=16%  Similarity=0.145  Sum_probs=158.5

Q ss_pred             HHHHHCCCCEEECCCCCCCCCCCHHHHHHHHH-HHH---CCCC-CCC-CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf             99998699726656589749889999999999-983---8875-699-87789899999999864210133332233233
Q gi|254780602|r   24 RDLRSKGIDVLCLTAGEPDFDMPENVKYAVVR-AME---RGET-KYT-AVAGISPLREAIVEKFRRDNDLHYTSDQIIVG   97 (400)
Q Consensus        24 ~~~~~~g~~ii~l~~G~p~~~~p~~i~~a~~~-al~---~~~~-~Y~-~~~G~~~lR~aia~~~~~~~g~~~~~e~I~it   97 (400)
                      ++.-..-.+||-|.-..-.. .|+.+..+..+ +.+   ++.- ... .......+-+.+.+.+....|  ..+.+++++
T Consensus        23 r~~f~lp~~viyLdgnSLGa-~p~~~~a~~~q~a~deW~~~lirsw~~a~~~W~~lp~~lgdklApLiG--A~~~Evvv~   99 (407)
T COG3844          23 RDRFALPGGVIYLDGNSLGA-RPRAVTARLQQVATDEWGEGLIRSWNKAKADWFDLPERLGDKLAPLIG--ARAGEVVVT   99 (407)
T ss_pred             HHHCCCCCCEEEEECCCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCHHHHHHHHHHHHC--CCCCCEEEE
T ss_conf             75225999838960642346-865779999999999987433543202588632253677777644316--887846972


Q ss_pred             CCCCCCCCCCCCCCCC--CCCCCCCCC-CCCCC----CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEE
Q ss_conf             4543333222222233--223222233-33232----2222222222222222222232221033310001221220121
Q gi|254780602|r   98 TGAKHVIFNALMATVN--MGDEVLIPR-PYWVS----YPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQAITPKTKWLFL  170 (400)
Q Consensus        98 ~G~~~~l~~~~~~~~~--~Gd~Vlv~~-P~y~~----y~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~k~i~l  170 (400)
                      ++++--|+.++.+...  +|+.||+++ -+||.    .+..++..|..   ++    -...++++++++++++.+.+++|
T Consensus       100 dtts~nl~k~L~aalr~~~~r~vIv~E~~~fpTdly~a~g~~~~~~~~---~~----~~~~~~P~~~~~~~~dd~AvV~L  172 (407)
T COG3844         100 DTTSINLFKVLAAALRPQEGRRVIVSEGDNFPTDLYIAEGLADLLGIG---YD----LEGVIAPRALEEAITDDVAVVLL  172 (407)
T ss_pred             CCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHCCHHHHHCCC---CC----CEEEECHHHHHHHHCCCEEEEEE
T ss_conf             785167999999984667885599645888885134312366661565---45----13432727788750465579984


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCC-CCCCCCC
Q ss_conf             135421000012333321112233333201110122110000012233222111233322574146544322-3445444
Q gi|254780602|r  171 NSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYA-MTGLRIG  249 (400)
Q Consensus       171 ~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~-~~G~RiG  249 (400)
                      ++-+-=||..++-   .+|-.+ +.+++++++.|=+|+-=.++    ..   +..  ..--+-+++--|.++ -||---|
T Consensus       173 ~~V~y~TGql~dm---~aiT~~-AH~~galv~wDLAHsaGavp----~~---Lh~--~gaDfaigcsyKYLNgGPGapa~  239 (407)
T COG3844         173 SHVNYKTGQLLDM---RAITAL-AHQHGALVGWDLAHSAGAVP----VD---LHA--AGADFAIGCSYKYLNGGPGAPAG  239 (407)
T ss_pred             CCCCCCCCCEEEH---HHHHHH-HHHCCCEEEEEHHCCCCCCC----EE---ECC--CCCCEEEEEECEECCCCCCCCEE
T ss_conf             5634443412238---899998-87458647762011257765----11---034--67874410100002579997206


Q ss_pred             CCCCHHHHHHHHHH-----------------------HCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCC----
Q ss_conf             22110122687531-----------------------001222332222222222223467643222-22211000----
Q gi|254780602|r  250 YAAGALSLIKSMIV-----------------------LQGQQTSGACSIAQWAAVEALNGPQDFVVN-NRKIFEYR----  301 (400)
Q Consensus       250 ~~v~~~~li~~l~~-----------------------~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~-~~~~~~~~----  301 (400)
                       +-..+...+....                       ......+.++.    ....+|+...+...+ ....++++    
T Consensus       240 -l~v~~~h~e~~~~~lsgW~gha~pf~m~~~y~p~~ga~rf~~gt~~V----~s~aal~~aLDifa~~~i~~lR~kSlaL  314 (407)
T COG3844         240 -LFVAPRHRERSWPPLSGWWGHARPFAMEEVYAPGPGARRFLCGTQPV----LSLAALEGALDIFADVDITELRKKSLAL  314 (407)
T ss_pred             -EEECCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCEEECCCCH----HHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_conf             -88610224544453334357788501232037676510122078226----5667774013465533789998765678


Q ss_pred             CCCHHHHHHC-C--CCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCCCCEEEEEE
Q ss_conf             0000245530-4--776033027408998626410233211332248989999999987397998350228997289996
Q gi|254780602|r  302 RDLCVAQLQG-V--PGIRYMIPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGHGPSIRISY  378 (400)
Q Consensus       302 r~~~~~~L~~-~--~g~~~~~p~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~iRis~  378 (400)
                      -+++++.++. .  .++++..|...        .--+ ... .-.........+.| .++||..    +|-.++-+|+.|
T Consensus       315 Td~fieLvEa~~~~~~l~l~tPr~~--------~~rG-sqv-S~~hp~~~~V~qaL-i~rGVig----D~R~P~vlRfgf  379 (407)
T COG3844         315 TDYFIELVEARCEYYGLTLVTPRAH--------EERG-SQV-SLYHPHGYQVMQAL-IDRGVIG----DFREPDVLRFGF  379 (407)
T ss_pred             HHHHHHHHHHCCCCCCCEEECCCHH--------HHCC-CEE-EEECCCHHHHHHHH-HHCCCCC----CCCCCCEEEECC
T ss_conf             9999999884156677178466135--------4336-603-57368689999999-9738413----356887356427


Q ss_pred             E---CCHHHHHHHHHHHHHHHHHC
Q ss_conf             2---99999999999999999860
Q gi|254780602|r  379 A---VSDAILEEACVRIKRFCHSL  399 (400)
Q Consensus       379 ~---~~~e~l~~al~rl~~~l~~l  399 (400)
                      +   .+-.++-.|++.|.+.++++
T Consensus       380 tPlY~~~~DVw~AV~~L~evL~t~  403 (407)
T COG3844         380 TPLYVSFVDVWDAVDALEEVLDTL  403 (407)
T ss_pred             CCCEECHHHHHHHHHHHHHHHHHH
T ss_conf             531111658999999999999752


No 340
>PRK03080 phosphoserine aminotransferase; Provisional
Probab=97.55  E-value=0.00095  Score=42.88  Aligned_cols=325  Identities=12%  Similarity=-0.018  Sum_probs=139.8

Q ss_pred             ECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCC-CCCCCCCCCCCCCCCC
Q ss_conf             656589749889999999999983887569987789899999999864210133332233233-4543333222222233
Q gi|254780602|r   35 CLTAGEPDFDMPENVKYAVVRAMERGETKYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVG-TGAKHVIFNALMATVN  113 (400)
Q Consensus        35 ~l~~G~p~~~~p~~i~~a~~~al~~~~~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~e~I~it-~G~~~~l~~~~~~~~~  113 (400)
                      +|+-| |.--.|.+..+++...+-+-.|+=.+   ..++-+..-..+++..+++=+. +|++. .|++....++...++.
T Consensus        15 ~F~~G-Ps~~~p~~~l~~l~~sile~SHRs~~---f~~i~~~a~~~lr~Ll~iPddY-~Vlfl~GGaT~qf~~i~~nLl~   89 (381)
T PRK03080         15 RFSSG-PCKKRPGWSLDALADALLGRSHRQAP---GKAKLGEAIDGTRELLSLPADY-EVGIVPGSDTGAVEMALWSLLG   89 (381)
T ss_pred             CCCCC-CCCCCCHHHHHHHCCCHHCCCCCCHH---HHHHHHHHHHHHHHHHCCCCCC-EEEEECCCHHHHHHHHHHHCCC
T ss_conf             96888-83888102166615311127627738---9999999999999995899984-7999678467999999874557


Q ss_pred             CCC-CCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEECCCCCC--CCCCCCCCCCCC
Q ss_conf             223-222233332322--222222222222222222232221033310001221220121135421--000012333321
Q gi|254780602|r  114 MGD-EVLIPRPYWVSY--PDMVALCGGIPVFVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNP--SGVVYSQNRLRA  188 (400)
Q Consensus       114 ~Gd-~Vlv~~P~y~~y--~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~k~i~l~nP~NP--TG~v~s~~~l~~  188 (400)
                      ++. ..++ .=.|..-  ..+.+.....-+.+ ...+-+..||+..+..    ... ++++  ||=  +|+.++..+   
T Consensus        90 ~~~~~~~~-~G~fs~kwa~~a~~~~~~~~~~v-~~a~~g~iP~~~~~~~----~~d-~~~t--~NeTi~Gv~~p~~~---  157 (381)
T PRK03080         90 ARRVDHLA-WESFGAKWATDVVKQLKLEDPRV-LKADYGELPDLSAVDF----DVD-VVFT--WNGTTSGVRVPNAD---  157 (381)
T ss_pred             CCCCCEEE-ECCHHHHHHHHHHHHHCCCCCEE-EECCCCCCCCHHHCCC----CCC-EEEE--ECCCEEEEECCCCC---
T ss_conf             77772787-43144699999997436676158-7057777888123376----564-7987--35640108746767---


Q ss_pred             CCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHC---
Q ss_conf             11223333320111012211000001223322211123332257414654432234454442211012268753100---
Q gi|254780602|r  189 LADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTGLRIGYAAGALSLIKSMIVLQ---  265 (400)
Q Consensus       189 i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~v~~~~li~~l~~~~---  265 (400)
                         +.....+.++|+|-. +.+          .+..-+..+-.++..|.=|.+|.|| -++.++..++.++++....   
T Consensus       158 ---~~~~~~~~llv~D~S-S~i----------~s~~iD~sk~dviyagaQKnlG~~a-Gl~vvI~sp~al~r~~~~~~~r  222 (381)
T PRK03080        158 ---WIGADREGLTICDAT-SAA----------FALPLDWAKLDVYTFSWQKVLGGEG-GHGMLILSPRAVERLESYAPAW  222 (381)
T ss_pred             ---CCCCCCCCCEEEECH-HHH----------CCCCCCHHHCCEEEEEECCCCCCCC-CEEEEEECHHHHHHHHHCCCCC
T ss_conf             ---788888862787432-444----------3676785574279987000257877-4279997699998886138877


Q ss_pred             ---------C----------CCCCCCCC-CCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEE--EC
Q ss_conf             ---------1----------22233222-222222---22234676432222221100000002455304776033--02
Q gi|254780602|r  266 ---------G----------QQTSGACS-IAQWAA---VEALNGPQDFVVNNRKIFEYRRDLCVAQLQGVPGIRYM--IP  320 (400)
Q Consensus       266 ---------~----------~~~~~~~~-~~q~a~---~~~l~~~~~~~~~~~~~~~~~r~~~~~~L~~~~g~~~~--~p  320 (400)
                               .          ..+.+.|+ +.-+.+   ++++. .+.-++.+.++-+++.+.+++.+.+.+.+...  .|
T Consensus       223 ~iP~~l~~~~~~~a~e~~~~~s~~NTPp~f~iy~~~~~l~Wl~-~~GGl~~~~~rn~~ka~lLY~~id~s~~~~~~v~d~  301 (381)
T PRK03080        223 PLPKIFRLTKGGKLIENIFKGQTINTPSMLTVEDYLDQLDWAK-SIGGLDALIARTAANSSVLYDWAEKTPWATPLAADP  301 (381)
T ss_pred             CCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCH
T ss_conf             8844642455788876465346489961899999999999999-728899999999999999999997088743366884


Q ss_pred             C--CCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCCCCEEEEEEE--CCHHHHHHHHHHHHHHH
Q ss_conf             7--4089986264102332113322489899999999873979983502289972899962--99999999999999999
Q gi|254780602|r  321 D--GAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGHGPSIRISYA--VSDAILEEACVRIKRFC  396 (400)
Q Consensus       321 ~--g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~iRis~~--~~~e~l~~al~rl~~~l  396 (400)
                      +  ..+-+-+++.+..      .....-+..+...+.++.|+.=.-|+.= ..|.+|+++.  .+.+.++.-+.-|.=..
T Consensus       302 ~~RS~~nv~f~~~d~~------~~~~~~~~~~~~~l~~e~g~~di~ghR~-~~~GlR~s~y~av~~~dv~aL~~~ld~~~  374 (381)
T PRK03080        302 ATRSNTSVCLDFVDPA------DAQAAFDKALVAKLLRENGAVDIGPYRD-APNGLRIWCGATVEPSDVEALTPWLDWAF  374 (381)
T ss_pred             HHCCCCEEEEEECCCH------HHHHHHHHHHHHHHHHHCCEECCCCCCC-CCCCEEEEECCCCCHHHHHHHHHHHHHHH
T ss_conf             4523764899945805------5479999999999998298745655356-89855888327789999999999999999


Q ss_pred             HHC
Q ss_conf             860
Q gi|254780602|r  397 HSL  399 (400)
Q Consensus       397 ~~l  399 (400)
                      +++
T Consensus       375 ~~~  377 (381)
T PRK03080        375 ERL  377 (381)
T ss_pred             HHH
T ss_conf             998


No 341
>COG1932 SerC Phosphoserine aminotransferase [Coenzyme metabolism / Amino acid transport and metabolism]
Probab=97.42  E-value=0.0022  Score=40.65  Aligned_cols=326  Identities=13%  Similarity=0.103  Sum_probs=150.7

Q ss_pred             CEEECCCCCCCCCCCHHHHHHHHHHHHCCC-CCCC-----C-CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCC-CCCCCC
Q ss_conf             726656589749889999999999983887-5699-----8-7789899999999864210133332233233-454333
Q gi|254780602|r   32 DVLCLTAGEPDFDMPENVKYAVVRAMERGE-TKYT-----A-VAGISPLREAIVEKFRRDNDLHYTSDQIIVG-TGAKHV  103 (400)
Q Consensus        32 ~ii~l~~G~p~~~~p~~i~~a~~~al~~~~-~~Y~-----~-~~G~~~lR~aia~~~~~~~g~~~~~e~I~it-~G~~~~  103 (400)
                      .+.+|+.| |. ..|+.+++.+.+-+.+-. .|++     + +.-..++-+..-+.++..++++-+- +|++. .|++..
T Consensus         5 ~~~nFsaG-Pa-~lp~~vL~~a~~e~~~~~g~g~svme~SHRsk~~~~v~~~a~~~lreLl~iPd~Y-~VlflqGGat~q   81 (365)
T COG1932           5 RVYNFSAG-PA-ALPPEVLQQAQKELLDWNGLGMSVMEISHRSKEFKNVLEEAEKDLRELLNIPDDY-KVLFLQGGATGQ   81 (365)
T ss_pred             CCCCCCCC-CC-CCCHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCC-EEEEECCCCHHH
T ss_conf             78887888-52-4898999999998863416786301221333888999999999899995799874-699974853789


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCC-CCCCCCCCC--CCHHHHHHCCCCCCCCCEEECCCCC-CCC
Q ss_conf             32222222332232222333323222-222222222222-222222322--2103331000122122012113542-100
Q gi|254780602|r  104 IFNALMATVNMGDEVLIPRPYWVSYP-DMVALCGGIPVF-VDTQQDDNF--QVSPEKLEQAITPKTKWLFLNSPSN-PSG  178 (400)
Q Consensus       104 l~~~~~~~~~~Gd~Vlv~~P~y~~y~-~~~~~~g~~~~~-v~~~~~~~~--~~d~~~l~~~i~~~~k~i~l~nP~N-PTG  178 (400)
                      ..++...++.+...--+-.=.|.... ..++..+-.+.- .+...+.+|  .|+++..+  +.++..-+.+| +|| =+|
T Consensus        82 f~~~p~nLl~~~~~~yv~~g~Ws~~a~~eA~~~~~~~~~~~~~~~~~~~~~iP~~~~~~--~~~~~ayv~~~-~NeTi~G  158 (365)
T COG1932          82 FAMAPMNLLGKRGTDYVDTGAWSEFAIKEAKKVGKQPKLIDARIEEAGYGSIPDLSKWD--FSDNDAYVHFC-WNETISG  158 (365)
T ss_pred             HHHHHHHHHCCCCCEEEEEEEHHHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCHHHCC--CCCCCCEEEEE-CCCCCCC
T ss_conf             99888864213575057662145768999998645653123200026766799822146--67775579993-4886121


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf             00123333211122333332011101221100000122332221112333225741465443223445444221101226
Q gi|254780602|r  179 VVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTGLRIGYAAGALSLI  258 (400)
Q Consensus       179 ~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~v~~~~li  258 (400)
                      .-++.  .    ..+..  +..+++|-. +.          +.+..-+...--++..|.-|.+|..|  ++.++..++++
T Consensus       159 v~v~~--~----p~~~~--~~~~v~D~S-S~----------ilsr~iDvsk~dviyagaQKnlGpaG--ltvvIvr~~~l  217 (365)
T COG1932         159 VEVPE--L----PDIGS--DGLLVADAS-SA----------ILSRPIDVSKYDVIYAGAQKNLGPAG--LTVVIVRPDLL  217 (365)
T ss_pred             EECCC--C----CCCCC--CCEEEEECC-CH----------HHCCCCCHHHCCEEEEEHHHCCCCCC--EEEEEECHHHH
T ss_conf             57168--8----98887--760899656-27----------75577775671358876211257655--39999868997


Q ss_pred             HHHHHHC--------C----CCCCC-CCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEE-EECC
Q ss_conf             8753100--------1----22233-2222222222---223467643222222110000000245530477603-3027
Q gi|254780602|r  259 KSMIVLQ--------G----QQTSG-ACSIAQWAAV---EALNGPQDFVVNNRKIFEYRRDLCVAQLQGVPGIRY-MIPD  321 (400)
Q Consensus       259 ~~l~~~~--------~----~~~~~-~~~~~q~a~~---~~l~~~~~~~~~~~~~~~~~r~~~~~~L~~~~g~~~-~~p~  321 (400)
                      +++....        .    ..+.+ ||++.-+...   .++. .+.-++.+.++-+++.+.+++.+.+-+-.+. ..|+
T Consensus       218 ~r~~~~~~P~if~y~~~~~~~s~yNTPptfa~y~~~lv~~Wlk-~~GGl~~~~~rn~~ka~~LY~~id~s~fy~~~v~~~  296 (365)
T COG1932         218 ERAESYTLPSIFDYLTHADNGSMYNTPPTFAWYLLGLVFKWLK-SQGGLEALEARNQAKAQLLYDWIDKSDFYRNLVAKA  296 (365)
T ss_pred             HCCCCCCCCHHHHCHHHHCCCCCCCCCHHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHH
T ss_conf             0113568961764312110488427848999999999999999-749999999988998999999987277533445521


Q ss_pred             --CCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCCCCEEEEEE--ECCHHHHHHHHHHHHHHHH
Q ss_conf             --408998626410233211332248989999999987397998350228997289996--2999999999999999998
Q gi|254780602|r  322 --GAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGHGPSIRISY--AVSDAILEEACVRIKRFCH  397 (400)
Q Consensus       322 --g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~iRis~--~~~~e~l~~al~rl~~~l~  397 (400)
                        .-+-+-.++.           ...-+..|... ++++|+...-|+.  ..+.+|+++  +.+.|.++.=++-|+.|.+
T Consensus       297 ~RS~mnV~f~~~-----------~~~ld~~fv~e-ae~~gl~~lkGhr--~vgGmRasiynA~~~e~veaL~~fm~~f~~  362 (365)
T COG1932         297 NRSRMNVTFTLV-----------DAELDKGFVAE-AEAAGLIYLKGHR--SVGGLRASIYNAVPLEDVEALTDFMDWFEE  362 (365)
T ss_pred             HCCCEEEEEECC-----------CHHHHHHHHHH-HHHCCCCEECCCC--CCCCEEEEEECCCCHHHHHHHHHHHHHHHH
T ss_conf             215326898727-----------37777999999-9973774102664--778616654357788999999999999998


Q ss_pred             HC
Q ss_conf             60
Q gi|254780602|r  398 SL  399 (400)
Q Consensus       398 ~l  399 (400)
                      ..
T Consensus       363 ~~  364 (365)
T COG1932         363 TY  364 (365)
T ss_pred             HH
T ss_conf             60


No 342
>PRK05367 glycine dehydrogenase; Provisional
Probab=97.21  E-value=0.0018  Score=41.26  Aligned_cols=324  Identities=14%  Similarity=0.108  Sum_probs=147.8

Q ss_pred             HHHHHHHHHHHHCCCCEEEC-CCCCCCCCCCHHHHHHHHHHHHCCC--CCCCCCCCCHHHH----HHHHHH---HHHHCC
Q ss_conf             99999999999869972665-6589749889999999999983887--5699877898999----999998---642101
Q gi|254780602|r   17 LVAAQRVRDLRSKGIDVLCL-TAGEPDFDMPENVKYAVVRAMERGE--TKYTAVAGISPLR----EAIVEK---FRRDND   86 (400)
Q Consensus        17 ~~~~~~~~~~~~~g~~ii~l-~~G~p~~~~p~~i~~a~~~al~~~~--~~Y~~~~G~~~lR----~aia~~---~~~~~g   86 (400)
                      .++.+..+++.++++..-+| +.|.-+.-+|+.|+.-   .++++.  +.|+|-|  ||.-    |++-+|   .....|
T Consensus        65 ~e~l~~l~~ia~kN~~~~sfIG~Gyy~t~~P~VI~Rn---ilenp~WYTaYTPYQ--pEiSQGrLeal~nfQtmi~dLTG  139 (955)
T PRK05367         65 AEALAELRAIASKNKVFRSYIGQGYYGTHTPPVILRN---VLENPAWYTAYTPYQ--PEISQGRLEALLNFQTMVCDLTG  139 (955)
T ss_pred             HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEC---CCCCCCCCCCCCCCC--HHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             9999999999973885301034776687575200204---535888645779976--57766899999999999999868


Q ss_pred             CCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----CCCCCCCCCCCCCCCCCCCHHHHHHCCC
Q ss_conf             3333223323-3454333322222223322322223333232222222----2222222222222232221033310001
Q gi|254780602|r   87 LHYTSDQIIV-GTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDMVA----LCGGIPVFVDTQQDDNFQVSPEKLEQAI  161 (400)
Q Consensus        87 ~~~~~e~I~i-t~G~~~~l~~~~~~~~~~Gd~Vlv~~P~y~~y~~~~~----~~g~~~~~v~~~~~~~~~~d~~~l~~~i  161 (400)
                      +++.--.++= .+-+.+|+.++.+..-+....++|..-.+|.+...++    -.|.+++..+.          ++.  ..
T Consensus       140 m~vaNASllDeaTAaaEAm~ma~r~~k~k~~~~~V~~~~~Pqt~~Vl~Tra~~~giei~v~d~----------~~~--~~  207 (955)
T PRK05367        140 LPIANASLLDEATAAAEAMALAKRVSKSKSNRFFVDDDVHPQTLDVVRTRAEPLGIEVVVGDA----------AEA--LD  207 (955)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHCCCCCCEEEEECH----------HHC--CC
T ss_conf             760043210189999999999988622688879988987863899999605357977999575----------656--77


Q ss_pred             CCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEC-CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCC
Q ss_conf             221220121135421000012333321112233333201110-1221100000122332221112333225741465443
Q gi|254780602|r  162 TPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIIS-DDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKA  240 (400)
Q Consensus       162 ~~~~k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~-De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~  240 (400)
                      .+.+-++++-+|+ -.|.+.+   +..+++.+ ++.+.++|+ =|.-+ |+.  -+  +     |+-..--|+++|. -.
T Consensus       208 ~~d~~gvlvQyP~-~~G~i~D---~~~~~~~a-h~~gal~iv~~D~la-L~l--Lk--p-----PGe~GADIaVGs~-Qr  271 (955)
T PRK05367        208 HDDVFGVLLQYPG-TSGEVRD---YRALIAAA-HAAGALVAVAADLLA-LTL--LT--P-----PGEMGADIAVGSA-QR  271 (955)
T ss_pred             CCCEEEEEEECCC-CCCCCCC---HHHHHHHH-HHCCCEEEEECCHHH-HHC--CC--C-----HHHCCCCEEEECC-CC
T ss_conf             6777999997899-8887178---79999999-765978999746667-752--38--9-----6663876797316-66


Q ss_pred             CCC----CCCCCCCCCCHHHHHHHH----------------------------HHHCCCCCCCCCCCCCC--CCCCCCCC
Q ss_conf             223----445444221101226875----------------------------31001222332222222--22222346
Q gi|254780602|r  241 YAM----TGLRIGYAAGALSLIKSM----------------------------IVLQGQQTSGACSIAQW--AAVEALNG  286 (400)
Q Consensus       241 ~~~----~G~RiG~~v~~~~li~~l----------------------------~~~~~~~~~~~~~~~q~--a~~~~l~~  286 (400)
                      ||+    .|-..||+...+++.+.+                            ++-+....+|.+-..-.  ++..+.-+
T Consensus       272 fGvPmgfGGPhagffA~~~~~~R~mPGRiVG~S~D~~G~~ayrlaLQTREQHIRReKATSNICTaQaLLA~mA~~YAvYH  351 (955)
T PRK05367        272 FGVPMGFGGPHAAYFATRDAYKRSMPGRIVGVSVDAAGNPALRLALQTREQHIRREKATSNICTAQVLLAVMASMYAVYH  351 (955)
T ss_pred             CCCCCCCCCCCEEEEEECCCCCCCCCCCEEEEEECCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             67776678865378886366415899753403665896975553001489998765201011477899999998896300


Q ss_pred             CCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCC
Q ss_conf             76432222221100000002455304776033027408998626410233211332248989999999987397998350
Q gi|254780602|r  287 PQDFVVNNRKIFEYRRDLCVAQLQGVPGIRYMIPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGS  366 (400)
Q Consensus       287 ~~~~~~~~~~~~~~~r~~~~~~L~~~~g~~~~~p~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~  366 (400)
                      +.+-+.+..++.......+.+.|+.. |+++.  ...||=-+.+.-           ..+..++.. ...+.||.+.-  
T Consensus       352 GP~GLk~IA~rih~~a~~la~~l~~~-G~~v~--~~~fFDTl~v~~-----------~~~a~~i~~-~A~~~giNlr~--  414 (955)
T PRK05367        352 GPEGLKAIARRVHRLTAILAAGLKAL-GFKLV--HDSFFDTLTVEV-----------GGDAAAILA-RALAAGINLRR--  414 (955)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCC--CCCCEEEEEEEC-----------CCCHHHHHH-HHHHCCCEEEE--
T ss_conf             89999999999999999999999978-98445--787102799965-----------855999999-99976972898--


Q ss_pred             CCCCCCEEEEEEE--CCHHHHHHHHHHH
Q ss_conf             2289972899962--9999999999999
Q gi|254780602|r  367 SFGHGPSIRISYA--VSDAILEEACVRI  392 (400)
Q Consensus       367 ~Fg~~~~iRis~~--~~~e~l~~al~rl  392 (400)
                        ..++.|.|||-  ++.+++..-++-+
T Consensus       415 --~d~~~v~iSlDEttt~~dl~~l~~~f  440 (955)
T PRK05367        415 --VDDDAVGISLDETTTREDVAALLSVF  440 (955)
T ss_pred             --ECCCEEEEEECCCCCHHHHHHHHHHH
T ss_conf             --36996999935879999999999997


No 343
>KOG0628 consensus
Probab=97.11  E-value=0.014  Score=35.84  Aligned_cols=81  Identities=17%  Similarity=0.222  Sum_probs=55.4

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCC-CCCE---EECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEC
Q ss_conf             2222222222222222222232221033310001221-2201---21135421000012333321112233333201110
Q gi|254780602|r  128 YPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQAITPK-TKWL---FLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIIS  203 (400)
Q Consensus       128 y~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~-~k~i---~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~  203 (400)
                      .+..+..+|.+...++.++  +|.++.+.|+++|.+. .+++   ++|- +==|..+.+-+++.+|..+|.+ +++|+-+
T Consensus       195 veka~~i~~VklR~l~td~--n~~mr~~~L~~AIe~D~arGlIPf~v~a-t~GTT~~ca~D~l~elg~Vc~~-~glWLHV  270 (511)
T KOG0628         195 VEKACLIAGVKLRALPTDE--NFGMRGDTLRKAIEEDIARGLIPFFVCA-TLGTTSSCAFDELEELGPVCRE-EGLWLHV  270 (511)
T ss_pred             HHHHHHHCCEEEEEEECCC--CCCCCHHHHHHHHHHHHHCCCCCEEEEE-EECCCCCCCCCCHHHHCCHHHH-CCEEEEE
T ss_conf             8876744002688851366--7677879999999999867986579998-4057655555418774103522-6878996


Q ss_pred             CCCCCCCCC
Q ss_conf             122110000
Q gi|254780602|r  204 DDIYEHIVY  212 (400)
Q Consensus       204 De~Y~~l~~  212 (400)
                      |.+|+.-.|
T Consensus       271 DAAYAGsa~  279 (511)
T KOG0628         271 DAAYAGSAF  279 (511)
T ss_pred             EHHHCCCCC
T ss_conf             345315431


No 344
>TIGR00461 gcvP glycine dehydrogenase; InterPro: IPR003437   This family consists of glycine cleavage system P-proteins (1.4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T . The reaction catalysed by this protein is:    Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0006544 glycine metabolic process, 0005961 glycine dehydrogenase complex (decarboxylating).
Probab=97.00  E-value=0.00048  Score=44.70  Aligned_cols=160  Identities=16%  Similarity=0.244  Sum_probs=99.0

Q ss_pred             CCCCC---CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC---CCCCCCCCCC-CCC--CC--CCCCCCCCCCCCC
Q ss_conf             56998---778989999999986421013333223323345433---3322222223-322--32--2223333232222
Q gi|254780602|r   62 TKYTA---VAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKH---VIFNALMATV-NMG--DE--VLIPRPYWVSYPD  130 (400)
Q Consensus        62 ~~Y~~---~~G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~---~l~~~~~~~~-~~G--d~--Vlv~~P~y~~y~~  130 (400)
                      |-..|   ++|+.+|-..+.+|+-+-.|-|  .=-+=+-+|+|.   ||. +++... .+|  .+  =|+|.=.-...+.
T Consensus       538 HPF~P~~Q~eGY~~lia~Le~wL~~iTGfD--aislQPNsGaQGEYaGL~-vIR~YheSrgE~hRniCLIP~SAHGTNPA  614 (965)
T TIGR00461       538 HPFAPSEQVEGYQELIAQLEKWLVEITGFD--AISLQPNSGAQGEYAGLR-VIRSYHESRGEEHRNICLIPVSAHGTNPA  614 (965)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHCCCCC--CEECCCCCCCHHHHHHHH-HHHHHHHHCCCCCCCEEECCCCCCCCCHH
T ss_conf             878885022589999999988752105766--244178888446678899-99998760588987445307776788728


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCHHHHHHCCC---CCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCC
Q ss_conf             2222222222222222232221033310001---2212201211354210000123333211122333332011101221
Q gi|254780602|r  131 MVALCGGIPVFVDTQQDDNFQVSPEKLEQAI---TPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIY  207 (400)
Q Consensus       131 ~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i---~~~~k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y  207 (400)
                      .+.++|.++|+|.|+.+++  +|+.+|+++-   .++-.+|+++.|+  |=-|| .+.++.+||+. .+.+=-|     |
T Consensus       615 SA~MaGm~VVpV~Cd~~Gn--iDl~DL~~KAEq~gd~Laa~MvTYPS--ThGvf-E~tI~~~~diV-H~FGGqV-----Y  683 (965)
T TIGR00461       615 SAAMAGMQVVPVKCDKDGN--IDLVDLKAKAEQYGDELAAVMVTYPS--THGVF-EETIREVCDIV-HRFGGQV-----Y  683 (965)
T ss_pred             HHHHCCCEEEEEEECCCCC--EEHHHHHHHHHHCCCCEEEEEEECCC--CCCCC-HHHHCCEEEEE-ECCCCEE-----E
T ss_conf             9961698689876569995--00777788887506652567750587--76643-22210013114-4268847-----5


Q ss_pred             CCCCCCCCCC------CCCCCCCCCCCCEEEEECCCCCCCCCC
Q ss_conf             1000001223------322211123332257414654432234
Q gi|254780602|r  208 EHIVYRNCQF------SNIVNVEPSLYERTLVVNGVSKAYAMT  244 (400)
Q Consensus       208 ~~l~~~~~~~------~s~~~~~~~~~~~~i~~~S~SK~~~~~  244 (400)
                          .||...      ++...+-    -.|-+++ +.|||+.|
T Consensus       684 ----lDGANMNAQVGltsPgd~G----ADVcHLN-LHKTFcIP  717 (965)
T TIGR00461       684 ----LDGANMNAQVGLTSPGDLG----ADVCHLN-LHKTFCIP  717 (965)
T ss_pred             ----ECCCCCCCCCCCCCCCCCC----CCHHHHH-CCCCEECC
T ss_conf             ----2456642233667861105----6343430-54420126


No 345
>pfam05889 SLA_LP_auto_ag Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen). This family consists of several eukaryotic and archaeal proteins which are related to the human soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen). Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway. Some archaeal members are annotated as being pyridoxal phosphate-dependent enzymes.
Probab=96.83  E-value=0.0004  Score=45.15  Aligned_cols=301  Identities=16%  Similarity=0.151  Sum_probs=141.9

Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC-CCCCCC--CCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             9999999864210133332233233454333322-222223--32232-2223333232222222222222222222223
Q gi|254780602|r   73 LREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFN-ALMATV--NMGDE-VLIPRPYWVSYPDMVALCGGIPVFVDTQQDD  148 (400)
Q Consensus        73 lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l~~-~~~~~~--~~Gd~-Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~~~  148 (400)
                      |-..+...+-+..|+. +....++++-++. +.+ +++.+.  .|..+ |+.+.-.=-.-...+..+|.+++-++...++
T Consensus        57 LTn~l~~d~lr~~G~~-s~~~~~vvP~aTG-Msl~~~L~~~~~rp~a~yViw~RiDqKSc~Kai~~AGl~p~vVe~~~~~  134 (389)
T pfam05889        57 LTNELVKDFLKLLGLR-EVKNCFVVPLATG-MSLLCMLSWRRKRPKAKYVIWPRIDQKSSIKAAERAGFEPRLVETVLDG  134 (389)
T ss_pred             HHHHHHHHHHHHCCCC-CCCCEEEECCCCC-HHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHCCCEEEEEEEEECC
T ss_conf             9999999999982974-3165789504104-7999999998558899789986355522689999769714887525228


Q ss_pred             C-CCCHHHHHHCCCCCC-CC--CEEECCCCCCCCCCCC---CCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCC
Q ss_conf             2-221033310001221-22--0121135421000012---333321112233333201110122110000012233222
Q gi|254780602|r  149 N-FQVSPEKLEQAITPK-TK--WLFLNSPSNPSGVVYS---QNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIV  221 (400)
Q Consensus       149 ~-~~~d~~~l~~~i~~~-~k--~i~l~nP~NPTG~v~s---~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~  221 (400)
                      + ..-|.+++++++.+. .+  +-++++     .+++.   .+++.+|+++|. ++|+.-|...+|.--.   .......
T Consensus       135 d~l~Td~~~ie~~i~~~g~~~ilcVlsT-----TScFaPR~pD~v~~IAklC~-~~~IpHvVNnAYGlQ~---~~~~~~i  205 (389)
T pfam05889       135 DYLITDVNDVETIIEEKGEEVILAVLST-----TSCFAPRSPDNVKEIAKICA-EYDVPHLVNGAYGIQS---EETIRLI  205 (389)
T ss_pred             CEEECCHHHHHHHHHHHCCCCEEEEEEC-----CCCCCCCCCCCHHHHHHHHH-HCCCCEEECCHHHHHH---HHHHHHH
T ss_conf             8243589999999998387766899844-----66569999667999999999-7499747843036617---9999999


Q ss_pred             CCCCCCCCEEEEECCCCCCCCCCCCCCC-CCCC--HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             1112333225741465443223445444-2211--012268753100122233222222222222346764322222211
Q gi|254780602|r  222 NVEPSLYERTLVVNGVSKAYAMTGLRIG-YAAG--ALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGPQDFVVNNRKIF  298 (400)
Q Consensus       222 ~~~~~~~~~~i~~~S~SK~~~~~G~RiG-~~v~--~~~li~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~  298 (400)
                      .-.-....--.++.|.-|.|-+|   +| .+++  ++++++.+.+.-.-..+.  ++.-...+..|.-+.+-..+..+.-
T Consensus       206 ~~a~r~GRVDa~VQStDKNflVP---VGGaIIas~d~~~i~~is~~YPGRAS~--sp~lDlfITLLslG~~gy~~Ll~eR  280 (389)
T pfam05889       206 AAAHECGRVDAVVQSLDKNFIVP---VGGAIIAAFDESFIQEISEEYPGRASA--RPSKDKLITLLSLGCKAYLALMKEQ  280 (389)
T ss_pred             HHHHHCCCCEEEEEECCCCEEEE---CCCEEEEECCHHHHHHHHHCCCCCCCC--CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99986388218997068662553---487489708889999998418997777--4079999999997488899999999


Q ss_pred             CCCCCCHHHHHHCC---CCCEEEE-CCC--CEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHH--CCEEEEC-CCCCC
Q ss_conf             00000002455304---7760330-274--08998626410233211332248989999999987--3979983-50228
Q gi|254780602|r  299 EYRRDLCVAQLQGV---PGIRYMI-PDG--AFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEI--EKVAVVQ-GSSFG  369 (400)
Q Consensus       299 ~~~r~~~~~~L~~~---~g~~~~~-p~g--~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~--~gV~v~p-G~~Fg  369 (400)
                      ++.+.++.+.|+++   -|-++.. |.-  ++.+  .+..+..      ....+-.++...|..+  .|.-+++ +..|+
T Consensus       281 ke~~~~l~e~L~~~a~~~ge~lL~t~~N~IS~ai--tl~~l~~------~~~~~~t~lgs~Lf~r~VsG~RvV~~~~~~~  352 (389)
T pfam05889       281 KEMFPLLRELLKDLAEEVGEQLLDVPHNPISSAM--TLETLDE------ISKKGRTDLGSELFSRRVTGARVVRSSDPFG  352 (389)
T ss_pred             HHHHHHHHHHHHHHHHHHCCEEECCCCCCEEEEE--ECCCCCC------CCCCCHHHHHHHHHHCCCCCCEEECCCCCCC
T ss_conf             9999999999999999829875138999516888--7345566------6755499999999756787651665688853


Q ss_pred             -------CCCEEEE--EEECCHHHHHHHHHHHHHHHH
Q ss_conf             -------9972899--962999999999999999998
Q gi|254780602|r  370 -------HGPSIRI--SYAVSDAILEEACVRIKRFCH  397 (400)
Q Consensus       370 -------~~~~iRi--s~~~~~e~l~~al~rl~~~l~  397 (400)
                             +.+|+-+  +++...++++..++||.+-++
T Consensus       353 ~~~~~~y~~~Ylt~aaaiG~~~~dVd~f~~rL~k~l~  389 (389)
T pfam05889       353 TIEGCEYHGRYLNIASAIGMKDEDVDYVIERLDEILE  389 (389)
T ss_pred             EEECCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHC
T ss_conf             4616768836789998708868999999999998529


No 346
>TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase. In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein.
Probab=96.61  E-value=0.00027  Score=46.21  Aligned_cols=298  Identities=16%  Similarity=0.150  Sum_probs=141.5

Q ss_pred             HHHHHHHHHHHCCCCCCCCCCCCCCCCCC-CCCCCCCCCC--CCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             99999986421013333223323345433-3322222223--32232-22233332322222222222222222222232
Q gi|254780602|r   74 REAIVEKFRRDNDLHYTSDQIIVGTGAKH-VIFNALMATV--NMGDE-VLIPRPYWVSYPDMVALCGGIPVFVDTQQDDN  149 (400)
Q Consensus        74 R~aia~~~~~~~g~~~~~e~I~it~G~~~-~l~~~~~~~~--~~Gd~-Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~~~~  149 (400)
                      -..+...+-+..|+. +....++++-++. .|.+++.++-  .|+.+ ||.+.-.=-.-...+..+|.+++.++...+++
T Consensus       107 Tn~l~ld~lr~~G~~-s~~~~~vvP~ATGMsL~LcL~alr~~rp~a~yViw~RiDQKSc~K~i~~AGl~pivie~~l~gd  185 (444)
T TIGR03531       107 TNKLVKDFLKLLGLR-SVKSAIVVPLATGMSLSLCLSALRHKRPKAKYVIWPRIDQKSCIKAISTAGLEPRVIETVLDGD  185 (444)
T ss_pred             HHHHHHHHHHHCCCC-CCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHCCCEEEEEEEEECCC
T ss_conf             999999999983985-3265799625345189999999850188998899853555326889986597279974075188


Q ss_pred             -CCCHHHHHHCCCCCC-C-CCE-EECCCCCCCCCCCC---CCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf             -221033310001221-2-201-21135421000012---3333211122333332011101221100000122332221
Q gi|254780602|r  150 -FQVSPEKLEQAITPK-T-KWL-FLNSPSNPSGVVYS---QNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVN  222 (400)
Q Consensus       150 -~~~d~~~l~~~i~~~-~-k~i-~l~nP~NPTG~v~s---~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~  222 (400)
                       ..-|+++++++|.+- . ..+ +++     |.+++.   .+++.+|+++|. ++++.=|...+|.--.   ........
T Consensus       186 ~l~tdv~~ie~~i~~~g~~~i~cVlS-----TTScFAPR~~D~i~eiAklC~-~~~IpHvVNNAYGlQ~---~~~~~~i~  256 (444)
T TIGR03531       186 RLTTDVEDIERAIEEIGPENILCVLS-----TTSCFAPRSPDDIEEIAKICA-KYDIPHVVNNAYGLQS---NKYMEKIN  256 (444)
T ss_pred             EEECCHHHHHHHHHHHCCCCEEEEEE-----CCCCCCCCCCCCHHHHHHHHH-HCCCCEEECCHHHHHH---HHHHHHHH
T ss_conf             77469999999999828676479985-----365459999766999999999-7499837842036617---99999999


Q ss_pred             CCCCCCCEEEEECCCCCCCCCCCCCCC-CCCC--HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             112333225741465443223445444-2211--0122687531001222332222222222223467643222222110
Q gi|254780602|r  223 VEPSLYERTLVVNGVSKAYAMTGLRIG-YAAG--ALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGPQDFVVNNRKIFE  299 (400)
Q Consensus       223 ~~~~~~~~~i~~~S~SK~~~~~G~RiG-~~v~--~~~li~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~  299 (400)
                      -.-.....-.++.|.-|+|-+|   || .+++  ++++++++.+.-.-..+.  ++.-...+..|.-+.+-..+..+.-+
T Consensus       257 ~A~r~GRVDa~VQStDKNflVP---VGGaII~s~d~~~i~~is~~YPGRAS~--sp~lDlfITLLslG~~gy~~Ll~eRk  331 (444)
T TIGR03531       257 KAIKVGRVDAVVSSTDKNFMVP---VGGAIIYSFDENFIQEISKSYPGRASA--SPSLDVLITLLSMGSKGYLELLKERK  331 (444)
T ss_pred             HHHHCCCCEEEEEECCCCEEEE---CCCEEEEECCHHHHHHHHHCCCCCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9986498319997068662543---487489718889999998418997777--40799999999974888999999999


Q ss_pred             CCCCCHHHHHHCC---CCCEEEE-CCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHH--CCEEE-ECCC------
Q ss_conf             0000002455304---7760330-27408998626410233211332248989999999987--39799-8350------
Q gi|254780602|r  300 YRRDLCVAQLQGV---PGIRYMI-PDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEI--EKVAV-VQGS------  366 (400)
Q Consensus       300 ~~r~~~~~~L~~~---~g~~~~~-p~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~--~gV~v-~pG~------  366 (400)
                      +.++++.+.|+++   .|-++.. |+--.-+=+.+..+         ...+-.++...|..+  .|.-| .||.      
T Consensus       332 e~~~~l~~~L~~~a~~~gerlL~t~~N~IS~aitl~~l---------~~~~~t~lGsmLf~r~VsG~RVV~~~~~k~i~g  402 (444)
T TIGR03531       332 EMYKYLKELLQKLAERHGERLLDVPENPISSAMTLNTL---------RPKDPTMLGSMLYSRRVTGPRVVTNGDSKTVGG  402 (444)
T ss_pred             HHHHHHHHHHHHHHHHHCCEECCCCCCCEEEEEECCCC---------CCCCHHHHHHHHHHCCCCCCEEECCCCCEEECC
T ss_conf             99999999999999982987214899950577873667---------876789999999736887561775899738878


Q ss_pred             ----CCCCC------CEEEEE--EECCHHHHHHHHHHHHHH
Q ss_conf             ----22899------728999--629999999999999999
Q gi|254780602|r  367 ----SFGHG------PSIRIS--YAVSDAILEEACVRIKRF  395 (400)
Q Consensus       367 ----~Fg~~------~~iRis--~~~~~e~l~~al~rl~~~  395 (400)
                          +||..      +|+-++  ++...++++..++||.+-
T Consensus       403 ~~F~~~gsh~~~yp~~Ylt~aaaIG~~~~dvd~f~~rLdk~  443 (444)
T TIGR03531       403 CEFKGYGSHTSNYPCPYITAAAAIGMTKEDVDTFVSRLEKS  443 (444)
T ss_pred             EEEECCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf             77506777767785257998888188589999999998614


No 347
>KOG0629 consensus
Probab=95.39  E-value=0.032  Score=33.59  Aligned_cols=195  Identities=13%  Similarity=0.156  Sum_probs=96.2

Q ss_pred             CCCCCC---CCCCCCCCCCCCCCCCHHHHHHCCCCC-CCC-CE-EECCCCCCCCCCCCC-CCCCCCCCCCCCCCCCEEEC
Q ss_conf             222222---222222222223222103331000122-122-01-211354210000123-33321112233333201110
Q gi|254780602|r  131 MVALCG---GIPVFVDTQQDDNFQVSPEKLEQAITP-KTK-WL-FLNSPSNPSGVVYSQ-NRLRALADVLVRNPHVHIIS  203 (400)
Q Consensus       131 ~~~~~g---~~~~~v~~~~~~~~~~d~~~l~~~i~~-~~k-~i-~l~nP~NPTG~v~s~-~~l~~i~~~~a~~~~i~ii~  203 (400)
                      .+..+|   -.++.|++++.+  .+++++|++.|-+ +.| .+ ++.| .|-..+|+.. +.+..|+++| ++|++|+-+
T Consensus       213 aAa~lg~gtd~c~~v~t~e~G--km~~~dLe~kile~k~kg~~Pf~vn-aTaGTTV~GAFDdL~~iadiC-~k~~lWmHv  288 (510)
T KOG0629         213 AAAFLGLGTDHCIKVKTDERG--KMIPDDLEKKILEAKAKGGVPFFVN-ATAGTTVLGAFDDLNGIADIC-EKHKLWMHV  288 (510)
T ss_pred             HHHHHCCCCCEEEEECCCCCC--CCCHHHHHHHHHHHHHCCCCCEEEE-ECCCCEEEECCCCHHHHHHHH-HHCCEEEEE
T ss_conf             999856687506883255568--6566999999998885489975998-247866642458678899998-754879995


Q ss_pred             CCCCCC-CCCCCCCCCCCC-CCCCCCCCEEEEECCCCCCCCCCCCCCCCCCC-HHHHHHHHHHHCC------CCCCCCC-
Q ss_conf             122110-000012233222-11123332257414654432234454442211-0122687531001------2223322-
Q gi|254780602|r  204 DDIYEH-IVYRNCQFSNIV-NVEPSLYERTLVVNGVSKAYAMTGLRIGYAAG-ALSLIKSMIVLQG------QQTSGAC-  273 (400)
Q Consensus       204 De~Y~~-l~~~~~~~~s~~-~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~v~-~~~li~~l~~~~~------~~~~~~~-  273 (400)
                      |.++.. +.. ...+.... .+.+   -+.++. +..|..+ +.+.++.... -+.++.+.+....      .....++ 
T Consensus       289 DAAwGGglLm-S~k~R~kl~Gier---a~Svtw-npHK~~g-aplqCsa~l~r~~gll~~Cn~~~A~YLFq~dK~YdvS~  362 (510)
T KOG0629         289 DAAWGGGLLM-SRKHRHKLTGIER---ANSVTW-NPHKLMG-APLQCSAFLTREEGLLQRCNQMSAIYLFQQDKFYDVSY  362 (510)
T ss_pred             ECCCCCCCCC-CHHHHHHCCCCCC---CCCEEE-CHHHHHC-CCCHHHHHHHHHHHHHHHHCCCCHHHHHCCCCEEECCC
T ss_conf             1000555124-7555764057532---574116-6788645-86124579988777887640200244314685652100


Q ss_pred             ----CCCCCC-CCCC----C---CCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCE-EEE--CCCCEEEEEECCCCCC
Q ss_conf             ----222222-2222----3---46764322222211000000024553047760-330--2740899862641023
Q gi|254780602|r  274 ----SIAQWA-AVEA----L---NGPQDFVVNNRKIFEYRRDLCVAQLQGVPGIR-YMI--PDGAFYLYPSCQDLIG  335 (400)
Q Consensus       274 ----~~~q~a-~~~~----l---~~~~~~~~~~~~~~~~~r~~~~~~L~~~~g~~-~~~--p~g~~y~~~~~~~~~~  335 (400)
                          ...|.. -+..    |   ..+-.-+++..+.+-+..+++++.|++-+|.. +..  |+-.-++|..++....
T Consensus       363 DTgdK~iQCGRh~D~FKlWlmwkaKG~~Gfe~~v~k~~~lA~yl~~~lrer~~~~~l~~~~pe~~nv~fw~vp~~lR  439 (510)
T KOG0629         363 DTGDKAIQCGRHVDVFKLWLMWKAKGTQGFEAQVDKCLRLAEYLYDRLREREGFEMLFELEPEHVNVCFWYVPPSLR  439 (510)
T ss_pred             CCCCCHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEHHCCCCCEEEEEECCCCHHHC
T ss_conf             35630332476542999999997325625899999999999999999872656111013787547875045866761


No 348
>TIGR01364 serC_1 phosphoserine aminotransferase; InterPro: IPR003248  Phosphoserine aminotransferases (2.6.1.52 from EC) catalyse the conversion of O-phospho-L-serine and oxoglutarate to 3-phosphonooxypyruvate and L-glutamate in the major phosphorylated serine biosynthesis pathway. In bacteria it is also equired for the biosynthesis of pyridoxine. The enzyme requires pyridoxal phosphate as a cofactor, and is part of the aminotransferase class-V family.; GO: 0006564 L-serine biosynthetic process.
Probab=95.08  E-value=0.18  Score=29.03  Aligned_cols=332  Identities=14%  Similarity=0.168  Sum_probs=170.1

Q ss_pred             EEECCCCCCCCCCCHHHHHHHHHHHHC-CCCCCC------CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             266565897498899999999999838-875699------8778989999999986421013333223323345433332
Q gi|254780602|r   33 VLCLTAGEPDFDMPENVKYAVVRAMER-GETKYT------AVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIF  105 (400)
Q Consensus        33 ii~l~~G~p~~~~p~~i~~a~~~al~~-~~~~Y~------~~~G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l~  105 (400)
                      ++||+.| |- -.|+.|++.+++.+-+ ...|++      -+.-..++-......+++...++=+-+=+++--||+.-..
T Consensus         1 ~~NF~AG-PA-~LP~~VL~~aq~Ellnf~~~G~SVmEiSHRsk~F~~v~~~Ae~dlR~LL~iPd~Y~vLFLQGGAt~QFa   78 (391)
T TIGR01364         1 IYNFSAG-PA-ALPEEVLEQAQKELLNFNGLGMSVMEISHRSKEFEAVASEAESDLRELLNIPDNYEVLFLQGGATTQFA   78 (391)
T ss_pred             CCCCCCC-CC-CCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHH
T ss_conf             9447887-22-278889999999986575179766998538689999999999999988247998268987387246899


Q ss_pred             CCCCCCCC--CCC--CCCCCCC----CCC--CCCCCCC---CCCCCCCCCCCC-CCCCCC--CHHHHHHCCCC---CCCC
Q ss_conf             22222233--223--2222333----323--2222222---222222222222-223222--10333100012---2122
Q gi|254780602|r  106 NALMATVN--MGD--EVLIPRP----YWV--SYPDMVA---LCGGIPVFVDTQ-QDDNFQ--VSPEKLEQAIT---PKTK  166 (400)
Q Consensus       106 ~~~~~~~~--~Gd--~Vlv~~P----~y~--~y~~~~~---~~g~~~~~v~~~-~~~~~~--~d~~~l~~~i~---~~~k  166 (400)
                      .+-+-|+.  +++  ++++.+-    .|.  .+..+-.   .+|+++..+-.. ++++|.  |+.+.++  ++   ++..
T Consensus        79 ~~PlNL~~~~~~~~GK~~~A~Y~~TG~WS~kA~~EA~~~~~~~G~~v~~~~~~~~~~~y~~iP~~~~w~--~~~~G~~~~  156 (391)
T TIGR01364        79 AVPLNLLAAKEGKNGKILVADYIVTGAWSKKALKEAKKLGNPLGVEVNVVASGEEEGNYTKIPDQSEWE--ISEDGEDAA  156 (391)
T ss_pred             HHHHHHHHHCCCCCCCEEEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCC--CCCCCCCCC
T ss_conf             999988975369998578850022175889999998860430465677614200057864277702123--277878746


Q ss_pred             CEEECCCCC-CCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCC
Q ss_conf             012113542-1000012333321112233333201110122110000012233222111233322574146544322344
Q gi|254780602|r  167 WLFLNSPSN-PSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTG  245 (400)
Q Consensus       167 ~i~l~nP~N-PTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~~~G  245 (400)
                      -|++|. || =-|+-|.+    .+=+...+..++.||+|-- |          .|++..=+..+.-++..+.=|..|.+|
T Consensus       157 Yvh~c~-NETi~Gvef~P----~~P~~~~~~Pn~~LVaDmS-S----------~ilSR~~Dvs~fglIYAGAQKN~GpaG  220 (391)
T TIGR01364       157 YVHYCA-NETIHGVEFRP----ELPEVKNKDPNAPLVADMS-S----------NILSRPIDVSKFGLIYAGAQKNIGPAG  220 (391)
T ss_pred             EEEECC-CCCCCCEEECC----CCCCCCCCCCCEEEEECCC-H----------HHCCCCCCCCCCCEEEEEHHHCCCCCE
T ss_conf             657257-87110216647----6886788897526885154-3----------231576785113557500321205322


Q ss_pred             CCCCCCCCHHHHHHHHHH---------HCC------------CCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCC
Q ss_conf             544422110122687531---------001------------22233222222222222346--7643222222110000
Q gi|254780602|r  246 LRIGYAAGALSLIKSMIV---------LQG------------QQTSGACSIAQWAAVEALNG--PQDFVVNNRKIFEYRR  302 (400)
Q Consensus       246 ~RiG~~v~~~~li~~l~~---------~~~------------~~~~~~~~~~q~a~~~~l~~--~~~~~~~~~~~~~~~r  302 (400)
                        +-.++.-++|+++...         ...            .+.-.||+++-+++--.|+.  .+.-++++.+.=+++.
T Consensus       221 --~TvVIvR~DLLgr~~~~~LH~L~vP~~P~~~~Y~~~~~~~SmYNTPPtF~iY~~~LVf~Wlk~~GGv~~~e~~N~~KA  298 (391)
T TIGR01364       221 --LTVVIVRKDLLGRASDAELHKLGVPITPSMLNYKIHAENDSMYNTPPTFAIYVSGLVFKWLKEQGGVKAIEKRNQAKA  298 (391)
T ss_pred             --EEEEEECCHHHCCCCCCCHHHCCCCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf             --689998114415676230201666597841321898863887334025899987889999986062899999989999


Q ss_pred             CCHHHHHHCCCCCEE--EECCCCEEEEEECCCCCCCCCCCCCC---CCCHHHHHHHHHHHCCEEEECCCCCCCCCEEEEE
Q ss_conf             000245530477603--30274089986264102332113322---4898999999998739799835022899728999
Q gi|254780602|r  303 DLCVAQLQGVPGIRY--MIPDGAFYLYPSCQDLIGKKSPSGDV---IRTDLDFVNGLLEIEKVAVVQGSSFGHGPSIRIS  377 (400)
Q Consensus       303 ~~~~~~L~~~~g~~~--~~p~g~~y~~~~~~~~~~~~~~~~~~---~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~iRis  377 (400)
                      +++++.+.+-+|+=.  +.|+        .+..++-..-..+.   ..-+.+|... ++++|..-.-|+.  .=|.+|-|
T Consensus       299 ~LLY~~ID~S~gFY~~~v~k~--------~RS~MNV~F~~~~~~G~~eLe~~Fl~e-A~~~gl~~LKGHR--sVGG~RAS  367 (391)
T TIGR01364       299 QLLYDAIDNSNGFYRNPVDKR--------ARSLMNVVFTLPNEKGDEELEKEFLKE-AEERGLVGLKGHR--SVGGMRAS  367 (391)
T ss_pred             HHHHHHHHCCCCCCCCCCCHH--------HCCCCCEEEECCCCCCCHHHHHHHHHH-HHHCCCHHCCCCC--EECCEEEE
T ss_conf             999999864898011643754--------267464221378877855554899999-9970500127630--33125210


Q ss_pred             E--ECCHHHHHHHHHHHHHHHH
Q ss_conf             6--2999999999999999998
Q gi|254780602|r  378 Y--AVSDAILEEACVRIKRFCH  397 (400)
Q Consensus       378 ~--~~~~e~l~~al~rl~~~l~  397 (400)
                      +  |.|.|.++.=++=|++|-+
T Consensus       368 iYNA~ple~Vq~Lv~FM~~F~~  389 (391)
T TIGR01364       368 IYNALPLEGVQALVDFMKEFEK  389 (391)
T ss_pred             HHCCCCHHHHHHHHHHHHHHHH
T ss_conf             1117688999999999999986


No 349
>KOG3843 consensus
Probab=95.03  E-value=0.0048  Score=38.58  Aligned_cols=348  Identities=14%  Similarity=0.139  Sum_probs=148.1

Q ss_pred             CCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCC------C-CCCCCCHHH---HHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf             972665658974988999999999998388756------9-987789899---999999864210133332233233454
Q gi|254780602|r   31 IDVLCLTAGEPDFDMPENVKYAVVRAMERGETK------Y-TAVAGISPL---REAIVEKFRRDNDLHYTSDQIIVGTGA  100 (400)
Q Consensus        31 ~~ii~l~~G~p~~~~p~~i~~a~~~al~~~~~~------Y-~~~~G~~~l---R~aia~~~~~~~g~~~~~e~I~it~G~  100 (400)
                      .|+|+.+.|+-.-..--.+.+.....+-.|...      - |-..|..-|   -...+...-+..|++.-..-++ .+=+
T Consensus         6 vdmipvgageregrvl~pl~~r~hsn~~hgigrsgdi~~iqpka~gssll~~isne~a~~~i~l~glhav~nc~v-vpl~   84 (432)
T KOG3843           6 VDMIPVGAGEREGRVLCPLFQRLHSNFIHGIGRSGDILAIQPKAAGSSLLACISNEFAKDAIHLAGLHAVANCFV-VPLA   84 (432)
T ss_pred             CCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCEEE-EECC
T ss_conf             320134676545640268999886533304676777200372000167999988899999998840565410468-8535


Q ss_pred             C-CCCCCCCCCCC--CCCCCCCC-CCCC-CCCCCCCCCCCCCCCCCCCCC-CCCCCCCHHHHHHCCCCCC-CCCEEECCC
Q ss_conf             3-33322222223--32232222-3333-232222222222222222222-2232221033310001221-220121135
Q gi|254780602|r  101 K-HVIFNALMATV--NMGDEVLI-PRPY-WVSYPDMVALCGGIPVFVDTQ-QDDNFQVSPEKLEQAITPK-TKWLFLNSP  173 (400)
Q Consensus       101 ~-~~l~~~~~~~~--~~Gd~Vlv-~~P~-y~~y~~~~~~~g~~~~~v~~~-~~~~~~~d~~~l~~~i~~~-~k~i~l~nP  173 (400)
                      + -.+.+++..+-  +|..+-++ +.-. -..+ .....+|.+|+-+.-- +.+...-|++.+++.+.+. ...|+..  
T Consensus        85 tgmslslc~~s~r~krpkakyiiw~ridqks~~-ksi~~agfepiiie~i~d~d~l~tdleav~~~iee~g~dcilci--  161 (432)
T KOG3843          85 TGMSLSLCFLSLRHKRPKAKYIIWLRIDQKSCF-KSIIHAGFEPIIIENILDGDELITDLEAVEAIIEELGEDCILCI--  161 (432)
T ss_pred             CCCCHHHHHHHHHHCCCCCCEEEEEECCHHHHH-HHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEE--
T ss_conf             663088999988613876617898850428788-99986277745631345630777769999999997487628999--


Q ss_pred             CCCCCCCC---CCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCC-
Q ss_conf             42100001---23333211122333332011101221100000122332221112333225741465443223445444-
Q gi|254780602|r  174 SNPSGVVY---SQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTGLRIG-  249 (400)
Q Consensus       174 ~NPTG~v~---s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG-  249 (400)
                      | -|.+++   +++.+++|..+|+. ||+.-|+..+|.--.  ..-..-++.. .+...---++.|+.|.|-+|   +| 
T Consensus       162 ~-sttscfapr~pd~leaiaaica~-~diphivnnayglqs--ee~i~~iaa~-~~~grida~vqsldknf~vp---vgg  233 (432)
T KOG3843         162 H-STTSCFAPRSPDNLEAIAAICAA-HDIPHIVNNAYGLQS--EECIHKIAAA-AECGRIDAFVQSLDKNFMVP---VGG  233 (432)
T ss_pred             E-ECCCCCCCCCCCHHHHHHHHHHC-CCCHHHHCCCCCCCH--HHHHHHHHHH-HHHCCHHHHHHHHHHCCEEE---CCH
T ss_conf             5-05533578997519999999870-586255323212354--9999999988-65051989999750264100---344


Q ss_pred             CCCC--HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC----CCCCCCCCCCCCCCCHHHHHHCCCCCEEEECCCC
Q ss_conf             2211--012268753100122233222222222222346764----3222222110000000245530477603302740
Q gi|254780602|r  250 YAAG--ALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGPQD----FVVNNRKIFEYRRDLCVAQLQGVPGIRYMIPDGA  323 (400)
Q Consensus       250 ~~v~--~~~li~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~----~~~~~~~~~~~~r~~~~~~L~~~~g~~~~~p~g~  323 (400)
                      .+++  ...+|..+.+.-.-..+..|  +....+..|.-++.    .+.+.++.+-..|+.+.+.-+.+..--+..|+.-
T Consensus       234 aiia~fk~n~iq~iak~ypgrasa~p--s~dllitll~~gqn~f~e~~~eqkemf~~l~~ki~~~ae~~~e~l~~~p~n~  311 (432)
T KOG3843         234 AIIAAFKDNFIQEIAKMYPGRASASP--SLDLLITLLSLGQNAFKELFGEQKEMFLKLRNKIIKFAEAIGECLLETPENE  311 (432)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCCC--CHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
T ss_conf             57668677799999986899666685--0889999998221678888877999999999999999998613542289853


Q ss_pred             EEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHH--CCEEEECC------------CCCCC------CCEEEEEE--ECC
Q ss_conf             8998626410233211332248989999999987--39799835------------02289------97289996--299
Q gi|254780602|r  324 FYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEI--EKVAVVQG------------SSFGH------GPSIRISY--AVS  381 (400)
Q Consensus       324 ~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~--~gV~v~pG------------~~Fg~------~~~iRis~--~~~  381 (400)
                      .-+-..++.    ..+.  ..+.-..|-.-|+.+  .|--|+|-            .+||.      .+|+-++.  +..
T Consensus       312 is~amtl~t----i~~~--k~kavt~~gsilfak~isgarvv~~~q~kttieg~ef~~f~sht~e~~~~yln~a~aigm~  385 (432)
T KOG3843         312 ISLAMTLKT----IDEA--KDKAVTLFGSILFAKGISGARVVPLGQMKTTIEGCEFIGFGSHTNEQHCAYLNAACAIGMK  385 (432)
T ss_pred             HHHHHHHCC----CCHH--HHHHHHHHHHHHHHCCCCCCEEEECCCCCEEEECEEEECCCCCCCCCCHHHHHHHHHCCCC
T ss_conf             535532513----8867--7668999887887515667458653544002403277612335675752675577760771


Q ss_pred             HHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999986
Q gi|254780602|r  382 DAILEEACVRIKRFCHS  398 (400)
Q Consensus       382 ~e~l~~al~rl~~~l~~  398 (400)
                      ..++++-+.||.+-+.+
T Consensus       386 ~hdld~~~~rl~~~~a~  402 (432)
T KOG3843         386 DHDLDEFFNRLDRCLAA  402 (432)
T ss_pred             HHHHHHHHHHHHHHHHH
T ss_conf             75799999999999999


No 350
>KOG2790 consensus
Probab=94.73  E-value=0.35  Score=27.27  Aligned_cols=328  Identities=11%  Similarity=0.120  Sum_probs=141.1

Q ss_pred             CCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCC--------HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf             9726656589749889999999999983887569987789--------89999999986421013333223323345433
Q gi|254780602|r   31 IDVLCLTAGEPDFDMPENVKYAVVRAMERGETKYTAVAGI--------SPLREAIVEKFRRDNDLHYTSDQIIVGTGAKH  102 (400)
Q Consensus        31 ~~ii~l~~G~p~~~~p~~i~~a~~~al~~~~~~Y~~~~G~--------~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~  102 (400)
                      ..+++|+.|--  ..|..|+..+.+-+-+ ..+-+-+-+.        ....+.--..+++...++-+-+=+++-.|++.
T Consensus         6 ~~vvnFaaGPA--klp~~VL~e~qkdl~n-~~g~GisV~EmSHRsk~f~kii~~tes~lreLlniPdn~~vlf~QGGGt~   82 (370)
T KOG2790           6 ERVVNFAAGPA--KLPESVLLEAQKDLLN-FNGSGISVMEMSHRSKDFAKIINDTESLLRELLNIPDNYKVLFLQGGGTG   82 (370)
T ss_pred             CCEECCCCCCC--CCCHHHHHHHHHHHHC-CCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCC
T ss_conf             23030578830--0788999999987526-67764127774145255788888889999999659975069999578746


Q ss_pred             CCCCCCCCCC--CCCC---CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCHHHHHHCCCCCCCCCEEECCCCCC
Q ss_conf             3322222223--3223---22223333232222222222222222222223-2221033310001221220121135421
Q gi|254780602|r  103 VIFNALMATV--NMGD---EVLIPRPYWVSYPDMVALCGGIPVFVDTQQDD-NFQVSPEKLEQAITPKTKWLFLNSPSNP  176 (400)
Q Consensus       103 ~l~~~~~~~~--~~Gd---~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~~~-~~~~d~~~l~~~i~~~~k~i~l~nP~NP  176 (400)
                      ....+..-++  ..|+   -|+.-+-+=-.+..+-++.-...+..++.+.. +=.||.+.++.  +++.+.+|+|  .|-
T Consensus        83 qFaAv~lNL~glK~g~~AdYiVTGsWS~KA~~EAkk~~~~~~V~~~~k~y~ygkvPd~~~w~~--~~da~yvyyC--aNE  158 (370)
T KOG2790          83 QFAAVPLNLIGLKHGRCADYVVTGSWSAKAAEEAKKYGTPNIVIPKLKSYTYGKVPDPSTWEL--NPDASYVYYC--ANE  158 (370)
T ss_pred             CCCHHHHHHHCCCCCCCCCEEEECCCCHHHHHHHHHHCCCEEEECCCCCCCCCCCCCHHHCCC--CCCCCEEEEE--CCC
T ss_conf             310100222104568845648866300767999875198006713653334676898354253--8897479991--485


Q ss_pred             C--CCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCH
Q ss_conf             0--00012333321112233333201110122110000012233222111233322574146544322344544422110
Q gi|254780602|r  177 S--GVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTGLRIGYAAGA  254 (400)
Q Consensus       177 T--G~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~v~~  254 (400)
                      |  |.-++     .+- . ...++..++.|-- +.|.          +-.-+.....+++.+.-|..+..|.-+  ++.-
T Consensus       159 TVHGVEf~-----~~P-~-~~~~~~vlVaDmS-Snfl----------SrpvDvsk~gvi~aGAQKN~G~aG~Tv--vivr  218 (370)
T KOG2790         159 TVHGVEFD-----FIP-V-NDPKGAVLVADMS-SNFL----------SRPVDVSKFGVIFAGAQKNVGPAGVTV--VIVR  218 (370)
T ss_pred             EEECEECC-----CCC-C-CCCCCCEEEEECC-CCHH----------CCCCCCHHCCEEEECCCCCCCCCCCEE--EEEE
T ss_conf             14211137-----888-7-7889965887633-2031----------387540120158860212556555189--9983


Q ss_pred             HHHHHHHHHHC-----------CC-CCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEC
Q ss_conf             12268753100-----------12-2233222222222222346--7643222222110000000245530477603302
Q gi|254780602|r  255 LSLIKSMIVLQ-----------GQ-QTSGACSIAQWAAVEALNG--PQDFVVNNRKIFEYRRDLCVAQLQGVPGIRYMIP  320 (400)
Q Consensus       255 ~~li~~l~~~~-----------~~-~~~~~~~~~q~a~~~~l~~--~~~~~~~~~~~~~~~r~~~~~~L~~~~g~~~~~p  320 (400)
                      ++++.....+.           .+ ..-.+|.+.-+++--.|+.  .+.-+..+.+.-.++.+.+++.+.+..|+-..+-
T Consensus       219 ~dllg~~~~~tP~v~dyk~~~~NnSlyNTpP~f~iy~~~Lv~~~il~~GGl~a~e~~n~~KskllYd~iD~s~gfy~cpV  298 (370)
T KOG2790         219 KDLLGNALDITPSVLDYKIMDKNNSLYNTPPCFGIYVMGLVFEWILEKGGLAAMEKLNQEKSKLLYDAIDNSNGFYRCPV  298 (370)
T ss_pred             HHHHCCCCCCCCCCCCCHHHCCCCCCCCCCCEEEEEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCEEECCC
T ss_conf             56425655589620222310266410159985036433668999997366999998878877899998861498687556


Q ss_pred             CCCEEEEEECCCCCCCCCCCCCCCCC--HHHHHHHHHHHCCEEEECCCCCCCCCEEEEEE--ECCHHHHHHHHHHHHHHH
Q ss_conf             74089986264102332113322489--89999999987397998350228997289996--299999999999999999
Q gi|254780602|r  321 DGAFYLYPSCQDLIGKKSPSGDVIRT--DLDFVNGLLEIEKVAVVQGSSFGHGPSIRISY--AVSDAILEEACVRIKRFC  396 (400)
Q Consensus       321 ~g~~y~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Ll~~~gV~v~pG~~Fg~~~~iRis~--~~~~e~l~~al~rl~~~l  396 (400)
                      +      +.+..   ..........|  +.+|-..-.++ +..-.-|+.  .-|.||-|+  +.+.++.+.-.+-+++|.
T Consensus       299 e------~~~RS---~MNV~Fri~~d~Le~eFLkeA~~~-~mv~LKGhR--SVGGiRASlYNAisv~~~q~L~~~m~~F~  366 (370)
T KOG2790         299 E------PSVRS---RMNVPFRIEKDELEAEFLKEAAKE-HMVQLKGHR--SVGGIRASLYNAISVEEVQKLAAFMKEFQ  366 (370)
T ss_pred             C------HHHHH---CCCCCEEECCHHHHHHHHHHHHHH-HCCCCCCCC--CCCCCHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf             7------34421---014506846347789999999984-032224654--33534356541322999999999999999


Q ss_pred             H
Q ss_conf             8
Q gi|254780602|r  397 H  397 (400)
Q Consensus       397 ~  397 (400)
                      +
T Consensus       367 k  367 (370)
T KOG2790         367 K  367 (370)
T ss_pred             H
T ss_conf             8


No 351
>KOG2040 consensus
Probab=94.03  E-value=0.39  Score=26.94  Aligned_cols=163  Identities=17%  Similarity=0.256  Sum_probs=87.7

Q ss_pred             CCCCCC---CCCCHHHHHHHHHHHHHHCCCCCCCCCCC--CCCCCCC---CCCCCCCCCC-CCCC--CC--CCCCCCCCC
Q ss_conf             756998---77898999999998642101333322332--3345433---3322222223-3223--22--223333232
Q gi|254780602|r   61 ETKYTA---VAGISPLREAIVEKFRRDNDLHYTSDQII--VGTGAKH---VIFNALMATV-NMGD--EV--LIPRPYWVS  127 (400)
Q Consensus        61 ~~~Y~~---~~G~~~lR~aia~~~~~~~g~~~~~e~I~--it~G~~~---~l~~~~~~~~-~~Gd--~V--lv~~P~y~~  127 (400)
                      .+-|.|   .+|..++-..+-+++-.-.|.    |++.  ..+|++.   || .++++.. ..|+  +=  ++|.-.-..
T Consensus       568 IHPF~P~eQaqGY~~lf~~Le~~Lc~iTG~----D~~s~QPNsGA~GEYaGL-~~IRaY~~~kge~hRnvClIPvSAHGT  642 (1001)
T KOG2040         568 IHPFAPVEQAQGYQQLFTELEKDLCEITGF----DSFSLQPNSGAQGEYAGL-RVIRAYLESKGEGHRNVCLIPVSAHGT  642 (1001)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHEEECC----CCEEECCCCCCCCCHHHH-HHHHHHHHHCCCCCCEEEEEEECCCCC
T ss_conf             788885687764999999998777632066----613426898755311229-999999985477765168986024689


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCC---CCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECC
Q ss_conf             2222222222222222222232221033310001---2212201211354210000123333211122333332011101
Q gi|254780602|r  128 YPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQAI---TPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISD  204 (400)
Q Consensus       128 y~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i---~~~~k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~D  204 (400)
                      ....+.++|.++++|.++..++  +|..+|+++.   .++-.+++++.|+  |--++ .+.++.+|++. .+|+=-|-.|
T Consensus       643 NPASA~MagmkvvpV~~~~~G~--id~~dLk~kaekh~~~Laa~MvTYPS--T~Gvf-E~~i~d~cd~i-HehGGQVYlD  716 (1001)
T KOG2040         643 NPASAAMAGMKVVPVGCDANGN--IDMVDLKAKAEKHKDNLAALMVTYPS--THGVF-EEGIDDICDII-HEHGGQVYLD  716 (1001)
T ss_pred             CHHHHHHCCCEEEEEECCCCCC--CCHHHHHHHHHHHHHHHHEEEEECCC--CCCCC-CCCHHHHHHHH-HHCCCEEEEC
T ss_conf             8466886498688863157887--45999999999746522046785466--45665-54589999999-8639878853


Q ss_pred             CCCCCCCCCCCCCCCCCCCC-CCCC-CEEEEECCCCCCCCCC
Q ss_conf             22110000012233222111-2333-2257414654432234
Q gi|254780602|r  205 DIYEHIVYRNCQFSNIVNVE-PSLY-ERTLVVNGVSKAYAMT  244 (400)
Q Consensus       205 e~Y~~l~~~~~~~~s~~~~~-~~~~-~~~i~~~S~SK~~~~~  244 (400)
                               |.....-..+. |+.. ..+-.++ +.|+|..|
T Consensus       717 ---------GANMNAqVGlc~pGd~GaDV~HLN-LHKTFcIP  748 (1001)
T KOG2040         717 ---------GANMNAQVGLCRPGDIGADVCHLN-LHKTFCIP  748 (1001)
T ss_pred             ---------CCCCCCEECCCCCCCCCCCCCCCC-CCCEEEEC
T ss_conf             ---------777523025357765665310001-34035505


No 352
>TIGR02618 tyr_phenol_ly tyrosine phenol-lyase; InterPro: IPR013441    Tyrosine phenol-lyases (4.1.99.2 from EC) (beta-tyrosinase), are pyridoxal-phosphate enzymes which are closely related to tryptophanase (4.1.99.1 from EC) (see IPR013441 from INTERPRO). Both belong to the beta-eliminating lyase family.; GO: 0050371 tyrosine phenol-lyase activity.
Probab=93.91  E-value=0.017  Score=35.24  Aligned_cols=336  Identities=14%  Similarity=0.154  Sum_probs=174.9

Q ss_pred             HHHHHHHHHHCCCCEEECCCCCC--CCCCCHHHHHHHHH----HHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             99999999986997266565897--49889999999999----9838875699877898999999998642101333322
Q gi|254780602|r   19 AAQRVRDLRSKGIDVLCLTAGEP--DFDMPENVKYAVVR----AMERGETKYTAVAGISPLREAIVEKFRRDNDLHYTSD   92 (400)
Q Consensus        19 ~~~~~~~~~~~g~~ii~l~~G~p--~~~~p~~i~~a~~~----al~~~~~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~e   92 (400)
                      -.++.+.++.+|-+..-|..-+.  |+-+ +.-.+||.+    ++.-|.-.|..+.....|.+.+.+.|    |.    .
T Consensus        17 r~~r~~~~~~aGyntfll~s~~~yidllt-dsGt~amsd~qW~~lm~GdeayaG~~~f~~l~~~v~e~y----Gf----k   87 (450)
T TIGR02618        17 REEREKKMKEAGYNTFLLNSEDVYIDLLT-DSGTNAMSDKQWAGLMMGDEAYAGSRNFFHLEEVVRELY----GF----K   87 (450)
T ss_pred             HHHHHHHHHHCCCCEEEECCCCEEEEEEC-CCCCCHHHHHHHHHHEECCHHHHHHHHHHHHHHHHHHHC----CC----E
T ss_conf             57899999745740354302313566320-356301111212210011102232588899999999871----72----2


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--------CCCHHHHHHCCCCCC
Q ss_conf             332334543333222222233223222233332322222222222222222222232--------221033310001221
Q gi|254780602|r   93 QIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDMVALCGGIPVFVDTQQDDN--------FQVSPEKLEQAITPK  164 (400)
Q Consensus        93 ~I~it~G~~~~l~~~~~~~~~~Gd~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~~~~--------~~~d~~~l~~~i~~~  164 (400)
                      .|++|.-+..+=.++...++.|||-|- .+-+|..-+..-+..|+..+.+-.++.++        ..+|+..++++|.+.
T Consensus        88 ~~vPthqGrGae~l~s~~~ikPG~y~~-Gnmyftttr~hqe~~G~~fvd~~~deahd~~~~~~fkG~~d~~kl~~lid~~  166 (450)
T TIGR02618        88 YVVPTHQGRGAENLLSRILIKPGDYVP-GNMYFTTTRAHQEKNGATFVDIIIDEAHDAQLDLPFKGNVDVKKLQKLIDEV  166 (450)
T ss_pred             EEECCCCCCCHHHHHHHHHCCCCCCCC-CCEEEEEHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf             563066776478899886316887013-5400110011342058769998742344533673435750089999998540


Q ss_pred             --CCCEEECC--CCC-CCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCC----CC------CCCCCCCCCCCCCCCCCCC
Q ss_conf             --22012113--542-100001233332111223333320111012211----00------0001223322211123332
Q gi|254780602|r  165 --TKWLFLNS--PSN-PSGVVYSQNRLRALADVLVRNPHVHIISDDIYE----HI------VYRNCQFSNIVNVEPSLYE  229 (400)
Q Consensus       165 --~k~i~l~n--P~N-PTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~----~l------~~~~~~~~s~~~~~~~~~~  229 (400)
                        -+.-|+|-  --| -.|.-.|-..++++-++|.+ |++.++.|..-.    .|      .|.+.   ++..+..++..
T Consensus       167 Ga~~i~yi~~a~tvnlaGGqPvsman~r~v~~~~~~-hGi~~~~datr~venayfike~e~~y~~~---~~~~i~~em~s  242 (450)
T TIGR02618       167 GADKIPYICLAVTVNLAGGQPVSMANLREVRKLCEK-HGIKVFYDATRCVENAYFIKEREEGYKDK---SIKEILKEMMS  242 (450)
T ss_pred             CCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHH-CCEEEEEHHHHHHHHHHHHHHHHHCCCCC---HHHHHHHHHHH
T ss_conf             411024366666765058873027878999999864-68177621245566556443123000110---58999999876


Q ss_pred             --EEEEECCCCCCCCCCCCCC-CCCCCHHH-HHHHHHHHCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCC----
Q ss_conf             --2574146544322344544-42211012-26875310012223322222222222--23467643222222110----
Q gi|254780602|r  230 --RTLVVNGVSKAYAMTGLRI-GYAAGALS-LIKSMIVLQGQQTSGACSIAQWAAVE--ALNGPQDFVVNNRKIFE----  299 (400)
Q Consensus       230 --~~i~~~S~SK~~~~~G~Ri-G~~v~~~~-li~~l~~~~~~~~~~~~~~~q~a~~~--~l~~~~~~~~~~~~~~~----  299 (400)
                        ...++ |--|.+-+   .+ ||++.+++ +...... .....-++|+....+.-.  ++.  ....+.+...|-    
T Consensus       243 y~dGCtm-sGkkdClv---niGGfl~~n~~~~~~~a~e-~vv~~eGmP~yGGlaGrdmea~a--~G~~e~~~~~yi~hr~  315 (450)
T TIGR02618       243 YADGCTM-SGKKDCLV---NIGGFLCMNDDELFQKAKE-LVVVFEGMPSYGGLAGRDMEAMA--IGIREAVDYEYIEHRV  315 (450)
T ss_pred             HHCCCCC-CCCCCEEE---ECCCEEEECHHHHHHHCCC-EEEEEECCCCCCCCCCCHHHHHH--HHHHHHHHHHHHHHHH
T ss_conf             4056512-47641156---5052467522899862056-48997166765765420089999--8889887679999999


Q ss_pred             CCCCCHHHHHHCCCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEE------EECCCCC--CCC
Q ss_conf             00000024553047760330274089986264102332113322489899999999873979------9835022--899
Q gi|254780602|r  300 YRRDLCVAQLQGVPGIRYMIPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVA------VVQGSSF--GHG  371 (400)
Q Consensus       300 ~~r~~~~~~L~~~~g~~~~~p~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~------v~pG~~F--g~~  371 (400)
                      +...++.+.|+.. |+.+..|-||.-+|+|...+.......   ......++..+.-+.||-      +..|..-  |..
T Consensus       316 ~q~~yl~~~l~~a-G~Piv~P~GGhavflda~~f~~h~~q~---~fPaq~laa~~y~~~Gvr~merGi~saGr~~~tG~~  391 (450)
T TIGR02618       316 KQVRYLGDKLKAA-GVPIVKPVGGHAVFLDARKFLPHIPQD---QFPAQALAAAIYVESGVRSMERGIVSAGRNKKTGEH  391 (450)
T ss_pred             HHHHHHHHHHHHC-CCCEEECCCCCHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHHCCHHHHCCCEECCCCCCCCCC
T ss_conf             9999999999855-982440477400244488886314533---340788998887740411121230123777557654


Q ss_pred             -----CEEEEEEE
Q ss_conf             -----72899962
Q gi|254780602|r  372 -----PSIRISYA  379 (400)
Q Consensus       372 -----~~iRis~~  379 (400)
                           .-+|+++-
T Consensus       392 ~~Pkle~vrltiP  404 (450)
T TIGR02618       392 HRPKLELVRLTIP  404 (450)
T ss_pred             CCCCEEEEEEECC
T ss_conf             5884256765226


No 353
>TIGR02104 pulA_typeI pullulanase, type I; InterPro: IPR011840    Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the entries in IPR011838 from INTERPRO and IPR011839 from INTERPRO but having a different domain architecture with shorter sequences. Members are called type I pullulanases ..
Probab=93.51  E-value=0.029  Score=33.87  Aligned_cols=142  Identities=18%  Similarity=0.225  Sum_probs=74.6

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCC-CCC-------------CCCCCCCHHHHHHCC
Q ss_conf             33454333322222223322322223333-232222222222222222-222-------------223222103331000
Q gi|254780602|r   96 VGTGAKHVIFNALMATVNMGDEVLIPRPY-WVSYPDMVALCGGIPVFV-DTQ-------------QDDNFQVSPEKLEQA  160 (400)
Q Consensus        96 it~G~~~~l~~~~~~~~~~Gd~Vlv~~P~-y~~y~~~~~~~g~~~~~v-~~~-------------~~~~~~~d~~~l~~~  160 (400)
                      .++|...-+---.+++++.|.    .+|. ...=..-++-+|++-|.+ |+-             ..=+|.-||.-.-  
T Consensus       158 ~~SGv~~~~KGkYLGL~E~gT----~~~~G~~TGl~y~keLGVTHVqLLP~fDf~~~de~~~~Fe~~YNWGYDP~nyn--  231 (655)
T TIGR02104       158 PNSGVKNELKGKYLGLTETGT----KGPNGVSTGLDYLKELGVTHVQLLPVFDFASVDEEDPNFENAYNWGYDPLNYN--  231 (655)
T ss_pred             CCCCEECCCCCCCHHHCCCCC----CCCCCCCHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--
T ss_conf             788722166633210101586----68888510435554336535654341122410266778732277664766553--


Q ss_pred             CCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCC
Q ss_conf             12212201211354210000123333211122333332011101221100000122332221112333225741465443
Q gi|254780602|r  161 ITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKA  240 (400)
Q Consensus       161 i~~~~k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~  240 (400)
                         =+-+=|=+||+||+..+   .|++++++.| .++||-||.|=+|=|+. .-....++-.+.|+.+=|-=--++||  
T Consensus       232 ---vPEGSYsTdP~~P~~RI---~ELKqmi~~l-H~~GirVImDVVYNH~y-~~G~~S~Fek~VPgYyyR~~~~G~~~--  301 (655)
T TIGR02104       232 ---VPEGSYSTDPYDPATRI---LELKQMIQAL-HENGIRVIMDVVYNHTY-SRGEESPFEKTVPGYYYRYNEDGTFS--  301 (655)
T ss_pred             ---CCCCCCCCCCCCCCCHH---HHHHHHHHHH-HHCCCEEEEEECCCCCC-CCCCCCCHHHCCCCHHEEECCCCCCC--
T ss_conf             ---77754367888773076---7888999999-86688799850247603-34675850003872111147888824--


Q ss_pred             CCCCCCCCCCCCCHHH
Q ss_conf             2234454442211012
Q gi|254780602|r  241 YAMTGLRIGYAAGALS  256 (400)
Q Consensus       241 ~~~~G~RiG~~v~~~~  256 (400)
                       +-+|  ||=-+|++.
T Consensus       302 -NGtG--vGNdtASEr  314 (655)
T TIGR02104       302 -NGTG--VGNDTASER  314 (655)
T ss_pred             -CCCC--CCCCCCCCC
T ss_conf             -7643--547600002


No 354
>TIGR02418 acolac_catab acetolactate synthase, catabolic; InterPro: IPR012782    Acetolactate synthase is a thiamin pyrophosphate-dependent enzyme that combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. It exists in two distinct forms that have different properties, though they are clearly related , . The biosynthetic form, found in plants, fungi and bacteria, is involved in the biosynthesis of branched-chain amino acids and contains non-catalytic FAD. The catabolic form is found only in some bacteria, participates in butanediol fermentation, and does not contain FAD.   This entry represents the catabolic form of acetolactate synthase, generally found in species that posses acetolactate decarboxylase, which is often encoded in the same operon. The enzyme is thought to be a homotetramer, though this has not conclusively been shown. Each monomer consists of three distinct domains, designated, starting from the N-terminus, as alpha, beta and gamma . The core of the alpha and gamma domains is a six-stranded parallel beta sheet surrounded by alpha helices, while the the beta domain forms a double Rossman fold. The thiamin pyrophosphate cofactor has an unusual conformation that has not been seen in other enzymes using this cofactor, including the biosynthetic form of acetolactate synthase. The active site is located in a funnel at the dimer interface, bordered by residues from all three domains.; GO: 0000287 magnesium ion binding, 0003984 acetolactate synthase activity, 0030976 thiamin pyrophosphate binding, 0050660 FAD binding.
Probab=92.05  E-value=0.71  Score=25.37  Aligned_cols=110  Identities=18%  Similarity=0.256  Sum_probs=53.0

Q ss_pred             CCCCC-CHHHHHHHHHHHHCCC-----CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC-CCCC-CCCCCC
Q ss_conf             74988-9999999999983887-----56998778989999999986421013333223323345433-3322-222223
Q gi|254780602|r   41 PDFDM-PENVKYAVVRAMERGE-----TKYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKH-VIFN-ALMATV  112 (400)
Q Consensus        41 p~~~~-p~~i~~a~~~al~~~~-----~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~-~l~~-~~~~~~  112 (400)
                      |...+ |..-++.+.++++...     .|-..  +.++.-+||.+++++. .+++  =+-+=+.|+-+ -++. .|..-+
T Consensus       181 P~~Gaa~~~~i~~~~~~I~~Ak~PVlLlG~~a--S~~~~~~Av~rll~k~-~LPv--VeTfQgAG~vsrele~~TFfGRv  255 (553)
T TIGR02418       181 PKLGAAADADIDEVAEAIKNAKLPVLLLGLRA--SSQETTEAVRRLLKKT-QLPV--VETFQGAGVVSRELEDETFFGRV  255 (553)
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC--CCHHHHHHHHHHHCCC-CCCC--EEEEECCEEECHHCCCCCCEECC
T ss_conf             67888738899999999983199669850478--8889999999986460-6882--14020051311002456521001


Q ss_pred             -----CCCCCCC-----CCCCCCC--CCCC--CCCCCCCCCCCCCC---CCCCCCCCHHH
Q ss_conf             -----3223222-----2333323--2222--22222222222222---22232221033
Q gi|254780602|r  113 -----NMGDEVL-----IPRPYWV--SYPD--MVALCGGIPVFVDT---QQDDNFQVSPE  155 (400)
Q Consensus       113 -----~~Gd~Vl-----v~~P~y~--~y~~--~~~~~g~~~~~v~~---~~~~~~~~d~~  155 (400)
                           +|||..|     |-+=+|.  .|+.  .-....++++.++.   ..++.|.|+.|
T Consensus       256 GLFrNQ~GD~LLk~aDLvItIGYdPIEYep~~WN~~~~~~Iv~iD~~~A~i~~~yqP~~e  315 (553)
T TIGR02418       256 GLFRNQPGDKLLKQADLVITIGYDPIEYEPRNWNSELDATIVHIDVEPAEIDNNYQPDLE  315 (553)
T ss_pred             CCCCCCCCHHHHHHCCEEEEECCCCEECCHHHCCCCCCCEEEEEEEEEEEHHHCCCCCHH
T ss_conf             144587002577566978983388503075544778872068973144212003686144


No 355
>KOG1403 consensus
Probab=90.79  E-value=1.3  Score=23.82  Aligned_cols=298  Identities=12%  Similarity=0.090  Sum_probs=128.6

Q ss_pred             CCHHHHHHHHHHHHCCC--CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC---CCCCCCCC
Q ss_conf             89999999999983887--56998778989999999986421013333223323345433332222222---33223222
Q gi|254780602|r   45 MPENVKYAVVRAMERGE--TKYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFNALMAT---VNMGDEVL  119 (400)
Q Consensus        45 ~p~~i~~a~~~al~~~~--~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l~~~~~~~---~~~Gd~Vl  119 (400)
                      ..|.+.+|..+.+....  .++-.    .+|-+ .|+.+...  ++ .-+-++++|.++++..++++.-   .... .||
T Consensus        62 chp~VV~A~~kQmat~~tN~RFlh----d~lv~-cA~~l~st--lP-eLsvc~F~NSGSEANDLALRLAR~ftkhq-DvI  132 (452)
T KOG1403          62 CHPEVVRAGAKQMATISTNNRFLH----DELVQ-CARTLTST--LP-ELSVCFFVNSGSEANDLALRLARNFTKHQ-DVI  132 (452)
T ss_pred             CCHHHHHHHHHHHHHHCCCCHHHH----HHHHH-HHHHHHHC--CC-CCEEEEEECCCCHHHHHHHHHHHHHCCCC-CEE
T ss_conf             789999999988767504524667----78999-99998610--87-85189996688615589999987512567-548


Q ss_pred             CCCCCCCCCCCCCC-C------CC---CCCCCC---CCC--CCCCCCC----H-------HHHHHCCCC----CC--CCC
Q ss_conf             23333232222222-2------22---222222---222--2232221----0-------333100012----21--220
Q gi|254780602|r  120 IPRPYWVSYPDMVA-L------CG---GIPVFV---DTQ--QDDNFQV----S-------PEKLEQAIT----PK--TKW  167 (400)
Q Consensus       120 v~~P~y~~y~~~~~-~------~g---~~~~~v---~~~--~~~~~~~----d-------~~~l~~~i~----~~--~k~  167 (400)
                      +.+-.|-.+.+... .      .|   .+|.++   |+.  ..+.|..    +       .|.+++.++    ..  ..+
T Consensus       133 tldHAYHGHl~s~mE~SPYKF~~g~~v~kpd~VHVAPcPDvyrGK~r~~~~~~a~~~~~Yad~vk~I~~d~~~~g~gvAA  212 (452)
T KOG1403         133 TLDHAYHGHLQSVMEVSPYKFNQGGGVAKPDYVHVAPCPDVYRGKFRDKMYPDADMGALYADPVKEICQDQLAKGQGVAA  212 (452)
T ss_pred             EEECHHCCCEEEEEECCCEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHH
T ss_conf             87300034300146506443068988578761674578631256122013876650044303799999999852775799


Q ss_pred             EEECCCCCCCCCCCCCC-CCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCC
Q ss_conf             12113542100001233-33211122333332011101221100000122332221112333225741465443223445
Q gi|254780602|r  168 LFLNSPSNPSGVVYSQN-RLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTGL  246 (400)
Q Consensus       168 i~l~nP~NPTG~v~s~~-~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~~~G~  246 (400)
                      ++--+-+.=.|.+++++ -.+++++. .+.++=..|.||+--.|.--|.   ..++..  +++-+=-+-+..|..+ -|.
T Consensus       213 fiAEslQSCGGQiiPPagYFq~Va~~-Vr~aGGv~IaDEVQvGFGRvG~---hyWafq--~y~fiPDIVtmgKpmG-NGh  285 (452)
T KOG1403         213 FIAESLQSCGGQIIPPAGYFQAVADA-VRSAGGVCIADEVQVGFGRVGS---HYWAFQ--TYNFIPDIVTMGKPMG-NGH  285 (452)
T ss_pred             HHHHHHHHCCCCCCCCHHHHHHHHHH-HHCCCCEEEEEHHHHCCCCCCH---HHHHHH--HHCCCCCHHEECCCCC-CCC
T ss_conf             99999985698135843278999999-8517976984212104332310---354444--5245643300046577-997


Q ss_pred             CCCCCCCHHHHHHHHHH--HCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCHHHHHHCCC-CCEEEE-CC
Q ss_conf             44422110122687531--0012223322222222222234676-4322222211000000024553047-760330-27
Q gi|254780602|r  247 RIGYAAGALSLIKSMIV--LQGQQTSGACSIAQWAAVEALNGPQ-DFVVNNRKIFEYRRDLCVAQLQGVP-GIRYMI-PD  321 (400)
Q Consensus       247 RiG~~v~~~~li~~l~~--~~~~~~~~~~~~~q~a~~~~l~~~~-~~~~~~~~~~~~~r~~~~~~L~~~~-g~~~~~-p~  321 (400)
                      -++.+++-+++.+++..  +.-..+.+-+..+..++++.|+..+ +-+.+..+..   -+++...|+.+. ..+++- -.
T Consensus       286 PVa~VattkeIA~Af~atgv~YFNTyGGnPVsCAv~laVm~v~e~E~Lq~ha~~v---G~~L~~lL~~~k~kh~~IGDvR  362 (452)
T KOG1403         286 PVAAVATTKEIAQAFHATGVEYFNTYGGNPVSCAVGLAVMRVCEDENLQEHAQQV---GEKLEVLLRRLKQKHECIGDVR  362 (452)
T ss_pred             EEEEEECCHHHHHHHCCCCCEEHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHCCCEECCC
T ss_conf             0268853688999850266000004699806589999999997456677889988---7999999998765061310133


Q ss_pred             -CCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEEC
Q ss_conf             -4089986264102332113322489899999999873979983
Q gi|254780602|r  322 -GAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQ  364 (400)
Q Consensus       322 -g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~p  364 (400)
                       -|.|+=+|+-+--....+..   .-..-...+|-+.++|++..
T Consensus       363 GvGLFiGIdLVkD~~tRtP~t---k~A~~~v~rlke~y~VLlsa  403 (452)
T KOG1403         363 GVGLFIGIDLVKDRKTRTPDT---KEAHWVVNRLKELYRVLLSA  403 (452)
T ss_pred             CCEEEEEEEEECCCCCCCCCH---HHHHHHHHHHHHHHHEEEEC
T ss_conf             322788520001112379737---87999999998864078706


No 356
>KOG1405 consensus
Probab=86.59  E-value=0.55  Score=26.04  Aligned_cols=211  Identities=17%  Similarity=0.171  Sum_probs=90.5

Q ss_pred             HHHHHCCCCC-----CCCCEEECCC-CCCCC-CCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             3331000122-----1220121135-42100-001233332111223333320111012211000001223322211123
Q gi|254780602|r  154 PEKLEQAITP-----KTKWLFLNSP-SNPSG-VVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPS  226 (400)
Q Consensus       154 ~~~l~~~i~~-----~~k~i~l~nP-~NPTG-~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~  226 (400)
                      +++++++|..     ++-+-+++-| +--.| .--|++.+++|-+++ ++|++..|.||+-..-   | ..-.++.-+  
T Consensus       255 l~~Ve~li~~~~~k~~pVaaiIvEPIQsEGGDnhaSp~Ff~kLrdi~-~Kh~v~fivDEVQTGg---G-aTGk~WaHe--  327 (484)
T KOG1405         255 LAEVEDLIVKYRKKKKPVAAIIVEPIQSEGGDNHASPDFFRKLRDIT-KKHGVAFIVDEVQTGG---G-ATGKFWAHE--  327 (484)
T ss_pred             HHHHHHHHHHHHHCCCCEEEEEEECHHCCCCCCCCCHHHHHHHHHHH-HHCCEEEEEEEEECCC---C-CCCCEEEEH--
T ss_conf             99999999997603797579986511025788668989999999999-8649589964000078---8-667543202--


Q ss_pred             CC--CEEEEECCCCCCCCCCCCCCCCCCCHHHHH-HHHHHHCCCCCCC-CCCCCCC-CCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             33--225741465443223445444221101226-8753100122233-2222222-22222346764322222211000
Q gi|254780602|r  227 LY--ERTLVVNGVSKAYAMTGLRIGYAAGALSLI-KSMIVLQGQQTSG-ACSIAQW-AAVEALNGPQDFVVNNRKIFEYR  301 (400)
Q Consensus       227 ~~--~~~i~~~S~SK~~~~~G~RiG~~v~~~~li-~~l~~~~~~~~~~-~~~~~q~-a~~~~l~~~~~~~~~~~~~~~~~  301 (400)
                      .+  +.-.-+-+|||-|-..    ||... ++++ .+-.++-. +..+ ++...+. .++.... .++.+++    .++.
T Consensus       328 hw~l~~PpD~vTFSKK~q~g----Gffh~-~~frpn~pYrifN-TWmGdP~k~lll~~vv~~I~-~~~Ll~n----~~~v  396 (484)
T KOG1405         328 HWNLDSPPDVVTFSKKFQTG----GFFHD-EEFRPNEPYRIFN-TWMGDPSKNLLLEEVVQEIK-REDLLNN----VAHV  396 (484)
T ss_pred             HCCCCCCCCCEEHHHHHHCC----CCCCC-CCCCCCCHHHHHH-HHCCCHHHHHHHHHHHHHHH-HHHHHHH----HHHH
T ss_conf             03899995101102555227----64247-3348784478765-43078588899999999985-8889988----9999


Q ss_pred             CCCHHHHHHC----CCC-CEEEECCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCCCCEEEE
Q ss_conf             0000245530----477-60330274089986264102332113322489899999999873979983502289972899
Q gi|254780602|r  302 RDLCVAQLQG----VPG-IRYMIPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGHGPSIRI  376 (400)
Q Consensus       302 r~~~~~~L~~----~~g-~~~~~p~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~iRi  376 (400)
                      -+.+.+.|.+    .|| +.-.+..|+|..| |++....            .+-...+++-.||.+--   .| ...||+
T Consensus       397 G~~l~~gL~~Lq~~~p~~~~~~RGrGTF~a~-d~ps~~~------------Rdk~i~~~~~nGv~~GG---Cg-~~siRf  459 (484)
T KOG1405         397 GKALLKGLLELQAKYPGKINNLRGRGTFIAW-DCPSGSI------------RDKLILIARLNGVNLGG---CG-DKSIRF  459 (484)
T ss_pred             HHHHHHHHHHHHHHCCHHHHCCCCCCEEEEE-ECCCHHH------------HHHHHHHHHHCCCEECC---CC-CCEEEE
T ss_conf             9999988999988684255424566327997-3898178------------89999999876942146---54-202540


Q ss_pred             --EEECCHHHHHHHHHHHHHHHHHC
Q ss_conf             --96299999999999999999860
Q gi|254780602|r  377 --SYAVSDAILEEACVRIKRFCHSL  399 (400)
Q Consensus       377 --s~~~~~e~l~~al~rl~~~l~~l  399 (400)
                        ++.-.+.-..--++++.+.++.|
T Consensus       460 RPsLvf~~~Ha~i~l~~~~k~l~~l  484 (484)
T KOG1405         460 RPSLVFRKHHADIFLDIFDKILAGL  484 (484)
T ss_pred             CCCEEEHHHHHHHHHHHHHHHHCCC
T ss_conf             3320114666889999999986049


No 357
>TIGR01393 lepA GTP-binding protein LepA; InterPro: IPR006297   LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function of the proteins in this family are unknown. ; GO: 0005525 GTP binding.
Probab=84.65  E-value=2.4  Score=22.15  Aligned_cols=77  Identities=18%  Similarity=0.299  Sum_probs=40.4

Q ss_pred             ECCCCCCCCCCCCC-CCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE-CCCCCCCCCCCCC
Q ss_conf             11354210000123-333211122333332011101221100000122332221112333225741-4654432234454
Q gi|254780602|r  170 LNSPSNPSGVVYSQ-NRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVV-NGVSKAYAMTGLR  247 (400)
Q Consensus       170 l~nP~NPTG~v~s~-~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~-~S~SK~~~~~G~R  247 (400)
                      +++-+|||-.-++- ++.+-.+ +    .+++=|..+-|..|.-      ++-.+  .+.|-.++. .-.|.++| =|+|
T Consensus       276 iT~~~~Pa~eplpGF~~~KP~V-F----aGlYPid~~~Ye~Lrd------ALeKL--~LNDAsL~yE~E~S~ALG-FGFR  341 (598)
T TIGR01393       276 ITSVKNPAKEPLPGFKEVKPMV-F----AGLYPIDTEDYEDLRD------ALEKL--KLNDASLTYEPESSPALG-FGFR  341 (598)
T ss_pred             EECCCCCCCCCCCCCCCCCCEE-E----ECCCCCCCHHHHHHHH------HHHHH--HHHHHHHHCCCCCCCCCC-CCEE
T ss_conf             5256787376788861257658-6----0125888034689999------97555--440254210223630037-4043


Q ss_pred             CCCC-CCHHHHHHH
Q ss_conf             4422-110122687
Q gi|254780602|r  248 IGYA-AGALSLIKS  260 (400)
Q Consensus       248 iG~~-v~~~~li~~  260 (400)
                      |||+ .-+-|++++
T Consensus       342 CGFLGLLHmEiiqE  355 (598)
T TIGR01393       342 CGFLGLLHMEIIQE  355 (598)
T ss_pred             ECCCCCHHHHHHHH
T ss_conf             32666336899987


No 358
>PRK13118 consensus
Probab=81.87  E-value=1.6  Score=23.30  Aligned_cols=83  Identities=12%  Similarity=0.145  Sum_probs=37.1

Q ss_pred             CCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCC
Q ss_conf             12201211354210000123333211122333332011101221100000122332221112333225741465443223
Q gi|254780602|r  164 KTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAM  243 (400)
Q Consensus       164 ~~k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~~  243 (400)
                      +...|.+++|+      .+.+++++|++. ++ .-++.++=-   ..  .|.+ .   ...++..+.+-.+.+.++   .
T Consensus       147 gl~~I~lvaPt------t~~~Ri~~i~~~-a~-gFiY~vs~~---Gv--TG~~-~---~~~~~~~~~i~~ik~~t~---~  206 (269)
T PRK13118        147 GLDFIRLTSPT------TSDERLPRVLEH-AS-GYLYYVSLA---GV--TGAA-A---LDTEHVEEAVARLRRHTD---L  206 (269)
T ss_pred             CCCHHEEECCC------CCHHHHHHHHHC-CC-CCEEEEECC---CC--CCCC-C---CCHHHHHHHHHHHHHHCC---C
T ss_conf             98464036989------878999999843-78-838998545---66--7877-6---671989999999996258---9


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf             445444221101226875310012
Q gi|254780602|r  244 TGLRIGYAAGALSLIKSMIVLQGQ  267 (400)
Q Consensus       244 ~G~RiG~~v~~~~li~~l~~~~~~  267 (400)
                      | +=+||-+..++.++.+....+-
T Consensus       207 P-v~vGFGIs~~e~~~~v~~~aDG  229 (269)
T PRK13118        207 P-VVVGFGIRDAESAAAIARLADG  229 (269)
T ss_pred             C-EEEEECCCCHHHHHHHHCCCCE
T ss_conf             8-1787167999999999800999


No 359
>pfam00290 Trp_syntA Tryptophan synthase alpha chain.
Probab=81.24  E-value=1.4  Score=23.53  Aligned_cols=47  Identities=21%  Similarity=0.275  Sum_probs=29.0

Q ss_pred             CHHHH-HHHHHHHHHHCCCCEEECCCCCCCCCC--CHHHHHHHHHHHHCCC
Q ss_conf             58999-999999999869972665658974988--9999999999983887
Q gi|254780602|r   14 SATLV-AAQRVRDLRSKGIDVLCLTAGEPDFDM--PENVKYAVVRAMERGE   61 (400)
Q Consensus        14 s~~~~-~~~~~~~~~~~g~~ii~l~~G~p~~~~--p~~i~~a~~~al~~~~   61 (400)
                      +|..+ -.+.++.+...|.|+|-+++=..| |.  -|-|++|..+|+++|.
T Consensus        19 ~P~~~~~~~~i~~l~~~GaDiiEiGiPFSD-P~ADGpvIq~A~~~AL~~G~   68 (258)
T pfam00290        19 DPDLETTLEILEALEEAGADAIELGIPFSD-PLADGPTIQRANLRALAGGM   68 (258)
T ss_pred             CCCHHHHHHHHHHHHHCCCCEEEECCCCCC-CCCCCHHHHHHHHHHHHCCC
T ss_conf             899899999999999769999997899888-76658999999999998699


No 360
>PRK13116 consensus
Probab=81.06  E-value=1.6  Score=23.30  Aligned_cols=38  Identities=24%  Similarity=0.282  Sum_probs=18.6

Q ss_pred             HHHHHHCCCCEEECCCCCCCCCC--CHHHHHHHHHHHHCCC
Q ss_conf             99999869972665658974988--9999999999983887
Q gi|254780602|r   23 VRDLRSKGIDVLCLTAGEPDFDM--PENVKYAVVRAMERGE   61 (400)
Q Consensus        23 ~~~~~~~g~~ii~l~~G~p~~~~--p~~i~~a~~~al~~~~   61 (400)
                      ++.+...|.|+|-+++=..| |.  -|-|++|-.+|++.|.
T Consensus        37 l~~l~~~GaDiiElGiPFSD-P~ADGPvIQ~A~~rAL~~G~   76 (278)
T PRK13116         37 ISTAIEAGADALELGVPFSD-PVADGPTVAESHLRALDGGA   76 (278)
T ss_pred             HHHHHHCCCCEEEECCCCCC-CCCCCHHHHHHHHHHHHCCC
T ss_conf             99999669999997999888-56668999999999997698


No 361
>PRK13117 consensus
Probab=80.29  E-value=1.6  Score=23.26  Aligned_cols=37  Identities=27%  Similarity=0.354  Sum_probs=16.8

Q ss_pred             HHHHHHCCCCEEECCCCCCCCCC--CHHHHHHHHHHHHCC
Q ss_conf             99999869972665658974988--999999999998388
Q gi|254780602|r   23 VRDLRSKGIDVLCLTAGEPDFDM--PENVKYAVVRAMERG   60 (400)
Q Consensus        23 ~~~~~~~g~~ii~l~~G~p~~~~--p~~i~~a~~~al~~~   60 (400)
                      +..+...|.|+|-+++=..| |.  -|-|++|-.+||++|
T Consensus        37 ~~~l~~~GaDiiElGiPfSD-P~ADGpvIq~A~~rAL~~G   75 (268)
T PRK13117         37 IDTLIEAGADALELGIPFSD-PLADGPTIQNANLRALAAG   75 (268)
T ss_pred             HHHHHHCCCCEEEECCCCCC-CCCCCHHHHHHHHHHHHCC
T ss_conf             99999669998997899888-5655799999999998459


No 362
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=78.28  E-value=3.3  Score=21.32  Aligned_cols=61  Identities=25%  Similarity=0.342  Sum_probs=35.7

Q ss_pred             CHHHHHHHHHCCC-----------CHHHHH-HHHHHHHHHCCCCEEECCCCCCC-CCCCHHHHHHHHHHHHCCC
Q ss_conf             9367889873897-----------589999-99999999869972665658974-9889999999999983887
Q gi|254780602|r    1 MVFISNILRRVQP-----------SATLVA-AQRVRDLRSKGIDVLCLTAGEPD-FDMPENVKYAVVRAMERGE   61 (400)
Q Consensus         1 m~~~s~~~~~l~~-----------s~~~~~-~~~~~~~~~~g~~ii~l~~G~p~-~~~p~~i~~a~~~al~~~~   61 (400)
                      |..+++..++++.           +|..+. .+.++.+...|.|+|-+++-..| ..=-|-|++|..+|+++|.
T Consensus         1 Mnri~~~F~~~~~~~ali~y~taG~P~~e~s~~~~~~l~~~GaDiiElGiPfSDP~ADGpvIq~A~~~AL~~G~   74 (263)
T CHL00200          1 MNTISNVFEKLDKQCALIPFITAGDPDIVITKKALKILDKKGADIIELGIPYSDPLADGPIIQEASNRALKQGI   74 (263)
T ss_pred             CCHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCC
T ss_conf             96489999741489616888707389878999999999976999999789888866658999999999997798


No 363
>PRK13119 consensus
Probab=77.96  E-value=3.6  Score=21.10  Aligned_cols=41  Identities=22%  Similarity=0.268  Sum_probs=24.2

Q ss_pred             HHHHHHHHHCCCCEEECCCCCCC-CCCCHHHHHHHHHHHHCC
Q ss_conf             99999999869972665658974-988999999999998388
Q gi|254780602|r   20 AQRVRDLRSKGIDVLCLTAGEPD-FDMPENVKYAVVRAMERG   60 (400)
Q Consensus        20 ~~~~~~~~~~g~~ii~l~~G~p~-~~~p~~i~~a~~~al~~~   60 (400)
                      .+.++.+...|.|+|-+++-..| ..=-|-|++|-.+|+++|
T Consensus        32 ~~~l~~l~~~GadiiElGiPFSDP~ADGPvIq~A~~rAL~~G   73 (261)
T PRK13119         32 LALMHGMVANGADILELGVPFSDPMADGPVIQRAAERALANG   73 (261)
T ss_pred             HHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCC
T ss_conf             999999996699999978988886665899999999999779


No 364
>PRK13140 consensus
Probab=77.04  E-value=4.5  Score=20.47  Aligned_cols=60  Identities=18%  Similarity=0.318  Sum_probs=34.2

Q ss_pred             CHHHHHHHHHCC----------CCHHHH-HHHHHHHHHHCCCCEEECCCCCCCCCC--CHHHHHHHHHHHHCCC
Q ss_conf             936788987389----------758999-999999999869972665658974988--9999999999983887
Q gi|254780602|r    1 MVFISNILRRVQ----------PSATLV-AAQRVRDLRSKGIDVLCLTAGEPDFDM--PENVKYAVVRAMERGE   61 (400)
Q Consensus         1 m~~~s~~~~~l~----------~s~~~~-~~~~~~~~~~~g~~ii~l~~G~p~~~~--p~~i~~a~~~al~~~~   61 (400)
                      |..+++..+..+          .+|..+ -.+.++.+...|.|+|-+++-..| |.  -|-|++|..+|+++|.
T Consensus         1 Mnri~~~f~~~kk~~li~y~taG~P~~~~s~~~~~~l~~~GaDiiElGiPfSD-P~ADGpvIq~A~~rAL~~G~   73 (257)
T PRK13140          1 MNRINQLFQNKKKDILSIYFTAGYPTLEDTVSIIKDLEKHGVDMIEIGIPFSD-PLADGPVIQKSATQALKNGM   73 (257)
T ss_pred             CCHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEECCCCCC-CCCCCHHHHHHHHHHHHCCC
T ss_conf             96579999856997168888182898799999999999759999997898898-77658999999999998699


No 365
>TIGR02262 benz_CoA_lig benzoate-CoA ligase family; InterPro: IPR011957    Characterised members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases..
Probab=75.08  E-value=2.7  Score=21.87  Aligned_cols=72  Identities=17%  Similarity=0.284  Sum_probs=37.3

Q ss_pred             CCEEEECCCCEEEEE-------ECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEE---EECCCCCC---C-CCEEEEEEE
Q ss_conf             760330274089986-------264102332113322489899999999873979---98350228---9-972899962
Q gi|254780602|r  314 GIRYMIPDGAFYLYP-------SCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVA---VVQGSSFG---H-GPSIRISYA  379 (400)
Q Consensus       314 g~~~~~p~g~~y~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~---v~pG~~Fg---~-~~~iRis~~  379 (400)
                      |-+++.-+-|.|.|+       |+++.          ..+..|.-..|....+|+   |+|-++=.   + +-||=+.=+
T Consensus       400 GDKY~r~~dG~YtYaGR~DDmlKVSGI----------yVSPfEvE~AL~~H~~VLEAAVvg~~D~~GL~KPKAFvVL~~G  469 (520)
T TIGR02262       400 GDKYVRNDDGVYTYAGRTDDMLKVSGI----------YVSPFEVESALIAHPAVLEAAVVGVEDEDGLIKPKAFVVLRPG  469 (520)
T ss_pred             CCCEEECCCCEEEEECCCCCCEEECCE----------EECCHHHHHHHHCCHHHCEEEECCCCCCCCCCCCCEEEEECCC
T ss_conf             871036378506870244352355241----------6781799988513512220421587488887177115850788


Q ss_pred             --CCHHHHHHHHHHHHHHHHH
Q ss_conf             --9999999999999999986
Q gi|254780602|r  380 --VSDAILEEACVRIKRFCHS  398 (400)
Q Consensus       380 --~~~e~l~~al~rl~~~l~~  398 (400)
                        ...+-+++   -||+++++
T Consensus       470 ~~~~~~al~~---~LK~hvK~  487 (520)
T TIGR02262       470 ADIDNEALET---ELKEHVKD  487 (520)
T ss_pred             CCCCHHHHHH---HHHHHHHH
T ss_conf             7645134489---99999976


No 366
>TIGR02493 PFLA pyruvate formate-lyase 1-activating enzyme; InterPro: IPR012838    Members of this family are iron-sulphur proteins with a radical-SAM domain. A single glycine residue in 2.3.1.54 from EC, formate C-acetyltransferase (formate-pyruvate lyase), is oxidized to the corresponding radical by transfer of a proton from its CH2 to AdoMet with concomitant cleavage of the latter. The reaction requires Fe2+. The first stage is reduction of the AdoMet to give methionine and the 5'-deoxyadenosin-5-yl radical, which then abstracts a hydrogen radical from the glycine residue .; GO: 0043365 [formate-C-acetyltransferase]-activating enzyme activity.
Probab=71.12  E-value=8.3  Score=18.88  Aligned_cols=48  Identities=19%  Similarity=0.209  Sum_probs=28.7

Q ss_pred             CCCCC-CCCCHHHHHHHHHHHCCEEEECCCCCCCCCEEEEEEEC----CHHHHHHHHHHHHHHHHHCC
Q ss_conf             11332-24898999999998739799835022899728999629----99999999999999998609
Q gi|254780602|r  338 SPSGD-VIRTDLDFVNGLLEIEKVAVVQGSSFGHGPSIRISYAV----SDAILEEACVRIKRFCHSLQ  400 (400)
Q Consensus       338 ~~~~~-~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~iRis~~~----~~e~l~~al~rl~~~l~~l~  400 (400)
                      ...+. ......+|+++|.+. |          .+=|||--+.+    ++|+    +++|++|++++.
T Consensus       142 ~LTg~~~~~ptl~Fa~~L~~~-~----------kP~WiRYVlVPGyTD~~eD----i~~l~~fv~~~~  194 (243)
T TIGR02493       142 KLTGVKSLEPTLEFAKYLAKR-N----------KPIWIRYVLVPGYTDSEED----IEALAEFVKTLP  194 (243)
T ss_pred             CCCCCCCCHHHHHHHHHHHHC-C----------CCEEEEEEECCCCCCCHHH----HHHHHHHHHHCC
T ss_conf             014567752458999999965-8----------9889999865887799899----999999997469


No 367
>PRK13121 consensus
Probab=70.81  E-value=4.9  Score=20.28  Aligned_cols=83  Identities=13%  Similarity=0.176  Sum_probs=37.7

Q ss_pred             CCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCC
Q ss_conf             12201211354210000123333211122333332011101221100000122332221112333225741465443223
Q gi|254780602|r  164 KTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAM  243 (400)
Q Consensus       164 ~~k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~~  243 (400)
                      +...|.|++|+.      +.++++++++. +. .-++.++=   ...  .|.+. .   ..++..+.+=.+.+.++.   
T Consensus       147 gl~~I~lvaPtt------~~~Ri~~i~~~-~~-gFiY~Vs~---~Gv--TG~~~-~---~~~~~~~~i~~ik~~t~~---  206 (265)
T PRK13121        147 GIDPIFLLAPTS------TDERIAAVARV-AS-GYVYYVSL---KGV--TGAAT-L---DVSSVAAKLPAIRSHVPL---  206 (265)
T ss_pred             CCCEEEEECCCC------CHHHHHHHHHH-CC-CEEEEEEC---CCC--CCCCC-C---CHHHHHHHHHHHHHCCCC---
T ss_conf             996689958999------89999999962-89-80999755---556--67775-6---628899999999854799---


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf             445444221101226875310012
Q gi|254780602|r  244 TGLRIGYAAGALSLIKSMIVLQGQ  267 (400)
Q Consensus       244 ~G~RiG~~v~~~~li~~l~~~~~~  267 (400)
                      | .=+||-+.+++.++.+....+-
T Consensus       207 P-v~vGFGIs~~e~~~~v~~~ADG  229 (265)
T PRK13121        207 P-VGVGFGIRDAATARAVAEVADA  229 (265)
T ss_pred             C-EEEECCCCCHHHHHHHHHCCCE
T ss_conf             8-5997688989999999811999


No 368
>PRK13137 consensus
Probab=68.98  E-value=4.1  Score=20.71  Aligned_cols=37  Identities=22%  Similarity=0.124  Sum_probs=20.2

Q ss_pred             HHHHHHHHHHHHCCCC--EEECCCCCCCCCCCHHHHHHH
Q ss_conf             9999999999986997--266565897498899999999
Q gi|254780602|r   17 LVAAQRVRDLRSKGID--VLCLTAGEPDFDMPENVKYAV   53 (400)
Q Consensus        17 ~~~~~~~~~~~~~g~~--ii~l~~G~p~~~~p~~i~~a~   53 (400)
                      .++.+..++++++|+.  |--+..|+||+..-..+.+++
T Consensus        10 ~Ri~~~F~~~k~~~~~ali~yitaG~P~~~~s~~~~~~l   48 (266)
T PRK13137         10 QRLHAAFARARAEGRAAFIPFLTAGYPSAAGFLQVAEEL   48 (266)
T ss_pred             HHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf             899999999997699538878668188878999999999


No 369
>PRK13120 consensus
Probab=66.35  E-value=6.9  Score=19.37  Aligned_cols=87  Identities=13%  Similarity=0.193  Sum_probs=38.9

Q ss_pred             CCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCC
Q ss_conf             12201211354210000123333211122333332011101221100000122332221112333225741465443223
Q gi|254780602|r  164 KTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAM  243 (400)
Q Consensus       164 ~~k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~~  243 (400)
                      +...|.|++|+.      +.+++++|++.+ . .-++.++=   ...  .|.+-    ...++..+.+-.+...++   +
T Consensus       151 gi~~I~LiaPtT------~~eRi~~I~~~s-~-GFvY~VS~---~GV--TG~~~----~~~~~l~~~i~~ik~~t~---~  210 (285)
T PRK13120        151 GVAPIFLLAPTS------TEARIEAIGRVA-R-GYVYYVSL---KGV--TGAGS----LDTDDVARKLALIRRHVH---I  210 (285)
T ss_pred             CCCEEEEECCCC------CHHHHHHHHHHC-C-CCEEEEEC---CCC--CCCCC----CCHHHHHHHHHHHHHCCC---C
T ss_conf             996589957999------899999999508-9-81899865---654--68875----566889999999997269---9


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHCCCCCCC
Q ss_conf             4454442211012268753100122233
Q gi|254780602|r  244 TGLRIGYAAGALSLIKSMIVLQGQQTSG  271 (400)
Q Consensus       244 ~G~RiG~~v~~~~li~~l~~~~~~~~~~  271 (400)
                      | .=+||-+..++-++.+....+-...|
T Consensus       211 P-v~vGFGIs~~e~v~~~~~~ADGvIVG  237 (285)
T PRK13120        211 P-VGVGFGIRDAASAQRIAAHADAVVIG  237 (285)
T ss_pred             C-EEEEECCCCHHHHHHHHCCCCEEEEC
T ss_conf             7-59996259899999997029999987


No 370
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=65.87  E-value=6  Score=19.75  Aligned_cols=48  Identities=21%  Similarity=0.250  Sum_probs=31.0

Q ss_pred             CHHHH-HHHHHHHHHHCCCCEEECCCCCCC-CCCCHHHHHHHHHHHHCCC
Q ss_conf             58999-999999999869972665658974-9889999999999983887
Q gi|254780602|r   14 SATLV-AAQRVRDLRSKGIDVLCLTAGEPD-FDMPENVKYAVVRAMERGE   61 (400)
Q Consensus        14 s~~~~-~~~~~~~~~~~g~~ii~l~~G~p~-~~~p~~i~~a~~~al~~~~   61 (400)
                      +|..+ -.+.++.+...|.|+|-+++-..| ..=-|-|++|..+|+++|.
T Consensus        19 ~P~~e~~~~~~~~l~~~Gad~iEiGiPfSDP~aDGpvIq~a~~~AL~~G~   68 (256)
T PRK13111         19 DPDLETSLEILKALVEAGADIIELGIPFSDPVADGPVIQRASLRALAAGV   68 (256)
T ss_pred             CCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCC
T ss_conf             89989999999999965999999788878876657999999999997799


No 371
>PRK13114 consensus
Probab=65.71  E-value=5.2  Score=20.10  Aligned_cols=46  Identities=24%  Similarity=0.263  Sum_probs=27.5

Q ss_pred             HHHHHHH-HHHHHHHCCCCEEECCCCCCCCCC--CHHHHHHHHHHHHCCC
Q ss_conf             8999999-999999869972665658974988--9999999999983887
Q gi|254780602|r   15 ATLVAAQ-RVRDLRSKGIDVLCLTAGEPDFDM--PENVKYAVVRAMERGE   61 (400)
Q Consensus        15 ~~~~~~~-~~~~~~~~g~~ii~l~~G~p~~~~--p~~i~~a~~~al~~~~   61 (400)
                      |..+... .++.+...|.|+|-+++-..| |.  -|-|++|-.+|+++|.
T Consensus        24 P~~~~t~~~i~~l~~~GaDiiEiGiPFSD-P~ADGpvIq~A~~rAL~~G~   72 (266)
T PRK13114         24 PTPGDTAANLDALVAGGADVIELGMPFTD-PMADGPAIQAANLRSLAAGT   72 (266)
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEECCCCCC-CCCCCHHHHHHHHHHHHCCC
T ss_conf             99899999999999769999997999888-67768999999999998699


No 372
>PRK13131 consensus
Probab=65.64  E-value=6.7  Score=19.44  Aligned_cols=44  Identities=16%  Similarity=0.200  Sum_probs=22.9

Q ss_pred             HHHHH-HHHHHHHHHCCCCEEECCCCCCCCCC--CHHHHHHHHHHHHC
Q ss_conf             89999-99999999869972665658974988--99999999999838
Q gi|254780602|r   15 ATLVA-AQRVRDLRSKGIDVLCLTAGEPDFDM--PENVKYAVVRAMER   59 (400)
Q Consensus        15 ~~~~~-~~~~~~~~~~g~~ii~l~~G~p~~~~--p~~i~~a~~~al~~   59 (400)
                      |..+. .+.++.+...|.|+|-+++-..| |.  -|-|++|-.++++.
T Consensus        22 P~~e~s~~~~~~l~~~GadiiEiGiPFSD-P~ADGpvIQ~a~~rAL~~   68 (257)
T PRK13131         22 PNYELSFEIIKTLIISGVSALELGFAFSD-PVADGITIQASHLRALKH   68 (257)
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEECCCCCC-CCCCCHHHHHHHHHHHHC
T ss_conf             99889999999999779999997899888-554559999999999978


No 373
>PRK13139 consensus
Probab=65.00  E-value=6.6  Score=19.50  Aligned_cols=38  Identities=18%  Similarity=0.238  Sum_probs=18.2

Q ss_pred             HHHHHHCCCCEEECCCCCCC-CCCCHHHHHHHHHHHHCC
Q ss_conf             99999869972665658974-988999999999998388
Q gi|254780602|r   23 VRDLRSKGIDVLCLTAGEPD-FDMPENVKYAVVRAMERG   60 (400)
Q Consensus        23 ~~~~~~~g~~ii~l~~G~p~-~~~p~~i~~a~~~al~~~   60 (400)
                      ++++...|.|+|-+++=..| ..=-|-|++|..+|+++|
T Consensus        36 ~~~l~~~GaDiiElGiPFSDP~ADGpvIq~A~~~AL~~G   74 (254)
T PRK13139         36 IRAMVAGGVDLMELQIPFSEPMADGPVILKANQAALAGG   74 (254)
T ss_pred             HHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCC
T ss_conf             999996699999978988886665899999999999769


No 374
>PRK13127 consensus
Probab=64.78  E-value=6.1  Score=19.71  Aligned_cols=46  Identities=28%  Similarity=0.268  Sum_probs=25.2

Q ss_pred             HHHHH-HHHHHHHHHCCCCEEECCCCCCCCCC--CHHHHHHHHHHHHCCC
Q ss_conf             89999-99999999869972665658974988--9999999999983887
Q gi|254780602|r   15 ATLVA-AQRVRDLRSKGIDVLCLTAGEPDFDM--PENVKYAVVRAMERGE   61 (400)
Q Consensus        15 ~~~~~-~~~~~~~~~~g~~ii~l~~G~p~~~~--p~~i~~a~~~al~~~~   61 (400)
                      |..+. .+.++.+...|.|+|-+++=..| |.  -|-|+++..+|+++|.
T Consensus        22 P~~e~t~~~l~~l~~~GaDiiElGiPfSD-P~ADGPvIq~a~~rAL~~G~   70 (262)
T PRK13127         22 PDPEATLEFVKALVKGGADVIELGIPFSD-PVADGPTIQAADVRALSAGM   70 (262)
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEECCCCCC-CCCCCHHHHHHHHHHHHCCC
T ss_conf             99899999999999769999997898888-77657999999999997699


No 375
>PRK13138 consensus
Probab=61.32  E-value=7.8  Score=19.04  Aligned_cols=197  Identities=12%  Similarity=0.142  Sum_probs=80.4

Q ss_pred             HHHHHHHHHCCCCEEECCCCCCCCCC--CHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf             99999999869972665658974988--9999999999983887569987789899999999864210133332233233
Q gi|254780602|r   20 AQRVRDLRSKGIDVLCLTAGEPDFDM--PENVKYAVVRAMERGETKYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVG   97 (400)
Q Consensus        20 ~~~~~~~~~~g~~ii~l~~G~p~~~~--p~~i~~a~~~al~~~~~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~e~I~it   97 (400)
                      .+.++.+...|.|+|-+++=..| |.  -|-|++|..+|+++|.+   . ....++.+.+    ++.     .+      
T Consensus        30 ~~~~~~l~~~GadiiEiGiPFSD-P~ADGPvIq~A~~rAL~~G~~---~-~~~~~~~~~i----r~~-----~~------   89 (264)
T PRK13138         30 IIWADALIRGGAGILELGIPFSD-PVADGPVIQKAFKRALAHPFS---M-DKILEITAEI----HKL-----HP------   89 (264)
T ss_pred             HHHHHHHHHCCCCEEEECCCCCC-CCCCCHHHHHHHHHHHHCCCC---H-HHHHHHHHHH----CCC-----CC------
T ss_conf             99999999779998997998888-666589999999999977990---8-8974467760----335-----89------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCHHHHHHCCC-CCCCCCEEECCCCC
Q ss_conf             4543333222222233223222233332322222222222222222-222232221033310001-22122012113542
Q gi|254780602|r   98 TGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDMVALCGGIPVFVD-TQQDDNFQVSPEKLEQAI-TPKTKWLFLNSPSN  175 (400)
Q Consensus        98 ~G~~~~l~~~~~~~~~~Gd~Vlv~~P~y~~y~~~~~~~g~~~~~v~-~~~~~~~~~d~~~l~~~i-~~~~k~i~l~nP~N  175 (400)
                           -+-+++.+..|+     +...++..|...+..+|..-+-+| +..|.   .+.+++...+ ..+...|.|++|+.
T Consensus        90 -----~~pivlM~Y~N~-----i~~~G~e~F~~~~~~~GvdGlIipDLP~e~---~E~~~~~~~~~~~~i~~I~liaPtt  156 (264)
T PRK13138         90 -----EIPLVYLTYFNP-----LFSMGLEAFTERAKNSGIQGLIIPDLPFDT---PEAEEFFSQLERKKIDFIHLVTPAT  156 (264)
T ss_pred             -----CCCEEEEEEHHH-----HHHHCHHHHHHHHHHCCCCEEECCCCCCCC---HHHHHHHHHHHHCCCCEEEECCCCC
T ss_conf             -----888897521238-----988489999999987697758536898650---3359999999986998675217999


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHH
Q ss_conf             10000123333211122333332011101221100000122332221112333225741465443223445444221101
Q gi|254780602|r  176 PSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTGLRIGYAAGAL  255 (400)
Q Consensus       176 PTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~v~~~  255 (400)
                            +.++++++++. ++- -++.++=   ...  .|.+-    .+.++..+.+-.+.+.++   .| .=+||-+..+
T Consensus       157 ------~~~Ri~~i~~~-s~g-FiY~Vs~---~Gv--TG~~~----~~~~~~~~~i~~ik~~t~---~P-v~vGFGIs~~  215 (264)
T PRK13138        157 ------TEDRIQSMKSF-ASG-FIYYVTS---YGV--TGERG----AIASGLEDRIQMVRKIVG---LP-VCAGFGISTA  215 (264)
T ss_pred             ------CHHHHHHHHHH-CCC-EEEEEEC---CCC--CCCCC----CCCHHHHHHHHHHHHHCC---CC-EEEEECCCCH
T ss_conf             ------89999999973-888-0898754---566--78765----553769999999997438---98-3886067989


Q ss_pred             HHHHHHHHHCCCCCC
Q ss_conf             226875310012223
Q gi|254780602|r  256 SLIKSMIVLQGQQTS  270 (400)
Q Consensus       256 ~li~~l~~~~~~~~~  270 (400)
                      +..+.+....+-...
T Consensus       216 e~~~~~~~~ADGvIV  230 (264)
T PRK13138        216 DQAKEISTYADGVII  230 (264)
T ss_pred             HHHHHHHHCCCEEEE
T ss_conf             999999834999998


No 376
>TIGR01136 cysKM cysteine synthases; InterPro: IPR005856    This model discriminates cysteine synthases (both CysK and CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblance to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded.    Cysteine synthase (O-acetylserine (thiol)-lyase) is the enzyme responsible for the formation of cysteine from O-acetyl-serine and hydrogen sulphide with the concomitant release of acetic acid. In bacteria such two forms of the enzyme are known (genes cysK and cysM). CysM differs from CysK in that it can also use thiosulphate instead of sulphide, to produce cysteine thiosulphonate instead of cysteine. ; GO: 0004124 cysteine synthase activity, 0006535 cysteine biosynthetic process from serine.
Probab=60.74  E-value=3.6  Score=21.09  Aligned_cols=107  Identities=18%  Similarity=0.274  Sum_probs=55.7

Q ss_pred             CCCCHHHHHHHHHHHHHHCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCC
Q ss_conf             778989999999986421013333223323--34543333222222233223222233332322--22222222222222
Q gi|254780602|r   67 VAGISPLREAIVEKFRRDNDLHYTSDQIIV--GTGAKHVIFNALMATVNMGDEVLIPRPYWVSY--PDMVALCGGIPVFV  142 (400)
Q Consensus        67 ~~G~~~lR~aia~~~~~~~g~~~~~e~I~i--t~G~~~~l~~~~~~~~~~Gd~Vlv~~P~y~~y--~~~~~~~g~~~~~v  142 (400)
                      +.|.=-=|-++.-.....-.-.+.|+.++|  |+| .-||.+++-+-. +|=++++.=|-=..-  +.+.+.+|++++-.
T Consensus        37 P~gSVKDR~A~~MI~~AE~~G~lk~G~~iiEaTSG-NTGIaLAMvAAa-rGYkliL~MPetmS~ERr~~l~ayGA~L~LT  114 (315)
T TIGR01136        37 PGGSVKDRIALNMILDAEKRGLLKPGTTIIEATSG-NTGIALAMVAAA-RGYKLILTMPETMSLERRKLLKAYGAELILT  114 (315)
T ss_pred             CCCCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCC-CHHHHHHHHHHH-CCCCEEEECCCCHHHHHHHHHHHCCCEEEEE
T ss_conf             89766568889999999865887888889842778-448999999986-1991899858871789999998709669883


Q ss_pred             CCCCCCCCCCHHHHHHCCCCCCC-CCEEE---CCCCCCC
Q ss_conf             22222322210333100012212-20121---1354210
Q gi|254780602|r  143 DTQQDDNFQVSPEKLEQAITPKT-KWLFL---NSPSNPS  177 (400)
Q Consensus       143 ~~~~~~~~~~d~~~l~~~i~~~~-k~i~l---~nP~NPT  177 (400)
                      |-.+  |..=-.+.-++.+.+.+ +.+++   .||.||-
T Consensus       115 ~~~~--GM~GAi~kA~el~~~~p~~~~~l~QF~NpaNp~  151 (315)
T TIGR01136       115 PAEE--GMKGAIDKAEELAAETPNKYVMLDQFENPANPE  151 (315)
T ss_pred             CCCC--CCHHHHHHHHHHHHHCCCCEEECCCCCCCCHHH
T ss_conf             7335--757789999999985889621033258852147


No 377
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase; InterPro: IPR012768    Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1->4)-alpha-D-glucano}trehalose trehalohydrolase (3.2.1.141 from EC). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.; GO: 0004553 hydrolase activity hydrolyzing O-glycosyl compounds, 0005992 trehalose biosynthetic process.
Probab=59.36  E-value=2.1  Score=22.52  Aligned_cols=44  Identities=20%  Similarity=0.366  Sum_probs=24.2

Q ss_pred             EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCC
Q ss_conf             121135421000012333321112233333201110122110000012
Q gi|254780602|r  168 LFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNC  215 (400)
Q Consensus       168 i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~  215 (400)
                      |+.=-||||=|   ++++|+++++.| ..+++-||.|=+|-||-=+|+
T Consensus       157 Vl~yAp~~~YG---~Pd~Lk~lvDaA-H~~GL~V~LDVVYNHfGPeGN  200 (564)
T TIGR02402       157 VLPYAPHEAYG---GPDDLKALVDAA-HGLGLGVLLDVVYNHFGPEGN  200 (564)
T ss_pred             CCCCCCCCCCC---CCHHHHHHHHHH-HHCCCEEEEEEEEECCCCCCC
T ss_conf             44456217787---818999999999-856883887466515588601


No 378
>PRK13112 consensus
Probab=58.91  E-value=7.9  Score=19.00  Aligned_cols=84  Identities=11%  Similarity=0.165  Sum_probs=37.7

Q ss_pred             CCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCC
Q ss_conf             21220121135421000012333321112233333201110122110000012233222111233322574146544322
Q gi|254780602|r  163 PKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYA  242 (400)
Q Consensus       163 ~~~k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~  242 (400)
                      .+...|.+++|+      -+.+++++|++.+ + .-++.++=-   ..  .|.+-    ....+..+.+-.+...++   
T Consensus       147 ~~i~~I~lvaPt------t~~eRi~~i~~~s-~-GFiY~Vs~~---Gv--TG~~~----~~~~~~~~~i~~ik~~t~---  206 (279)
T PRK13112        147 AGINFIRLATPT------TDDKRLPKVLANT-S-GFVYYVSMT---GI--TGSAL----ADTSAVGEAVARIKRHTD---  206 (279)
T ss_pred             CCCCEEEEECCC------CCHHHHHHHHHCC-C-CCEEEEECC---CC--CCCCC----CCHHHHHHHHHHHHHHCC---
T ss_conf             783469982589------9899999998527-8-808998356---66--67664----564889999999997178---


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf             3445444221101226875310012
Q gi|254780602|r  243 MTGLRIGYAAGALSLIKSMIVLQGQ  267 (400)
Q Consensus       243 ~~G~RiG~~v~~~~li~~l~~~~~~  267 (400)
                      .| .=+||-+.+++.++.+....+-
T Consensus       207 ~P-v~vGFGIs~~e~~~~~~~~aDG  230 (279)
T PRK13112        207 LP-VCVGFGVKTPEQARAIAAHADG  230 (279)
T ss_pred             CC-CEEEECCCCHHHHHHHHCCCCE
T ss_conf             98-7678356999999999725999


No 379
>TIGR01132 pgm phosphoglucomutase, alpha-D-glucose phosphate-specific; InterPro: IPR005852    Phosphoglucomutase, alpha-D-glucose phosphate-specific () links the anaerobic or aerobic glycolysis of glucose-6-phosphate and glucose-1-phosphate produced by various glycan phosphorylases by catalysing the transfer of a phosphate group between C-1 and C-6 of glucose .     Alpha-D-glucose 1-phosphate = alpha-D-glucose 6-phosphate.; GO: 0004614 phosphoglucomutase activity, 0005975 carbohydrate metabolic process.
Probab=58.25  E-value=3.2  Score=21.43  Aligned_cols=81  Identities=20%  Similarity=0.294  Sum_probs=41.8

Q ss_pred             HHHHHHHHHHHHHHC-CCCEEECCCCCCCCCCCHHHHHHHHHHH---------H--CCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             899999999999986-9972665658974988999999999998---------3--887569987789899999999864
Q gi|254780602|r   15 ATLVAAQRVRDLRSK-GIDVLCLTAGEPDFDMPENVKYAVVRAM---------E--RGETKYTAVAGISPLREAIVEKFR   82 (400)
Q Consensus        15 ~~~~~~~~~~~~~~~-g~~ii~l~~G~p~~~~p~~i~~a~~~al---------~--~~~~~Y~~~~G~~~lR~aia~~~~   82 (400)
                      .++.|+|.+-|.+++ |. -=++-+|-=.+...+.....+.|.|         +  ...++|+|+++.   =.||--|-+
T Consensus        60 HILAi~QAv~~~R~~~G~-TGP~y~G~DtHaLSEPA~~s~LEVLaAN~v~~~v~tat~~~ryTPTPav---S~AILtyN~  135 (553)
T TIGR01132        60 HILAITQAVVDYRAAQGI-TGPLYIGKDTHALSEPAFVSALEVLAANQVEVIVQTATENNRYTPTPAV---SHAILTYNK  135 (553)
T ss_pred             HHHHHHHHHHHHHHHCCC-CCCEEECCCCCCCCHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCHHH---HHHHHHHCC
T ss_conf             899999999999972782-0351116775425406899999998746725888402247888896466---578874126


Q ss_pred             HHCCCCCCCCCCCCCCCCC
Q ss_conf             2101333322332334543
Q gi|254780602|r   83 RDNDLHYTSDQIIVGTGAK  101 (400)
Q Consensus        83 ~~~g~~~~~e~I~it~G~~  101 (400)
                      -+.  .--+|=||||+.=.
T Consensus       136 G~~--~~lADGIviTPSHN  152 (553)
T TIGR01132       136 GRK--EALADGIVITPSHN  152 (553)
T ss_pred             CCC--CCCCCEEEECCCCC
T ss_conf             788--77656147758777


No 380
>COG2875 CobM Precorrin-4 methylase [Coenzyme metabolism]
Probab=57.84  E-value=15  Score=17.33  Aligned_cols=58  Identities=22%  Similarity=0.308  Sum_probs=32.0

Q ss_pred             HHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH
Q ss_conf             9999999999869972665658974988999999999998388756998778989999999
Q gi|254780602|r   18 VAAQRVRDLRSKGIDVLCLTAGEPDFDMPENVKYAVVRAMERGETKYTAVAGISPLREAIV   78 (400)
Q Consensus        18 ~~~~~~~~~~~~g~~ii~l~~G~p~~~~p~~i~~a~~~al~~~~~~Y~~~~G~~~lR~aia   78 (400)
                      ++.....+..++|++|.+|..|+|+.  =-.+.|.|.+ |+.-.-.|.-.+|.+.+-.+-|
T Consensus        63 eIi~~m~~a~~~Gk~VvRLhSGDpsi--YgA~~EQm~~-L~~~gI~yevvPGVss~~AAAA  120 (254)
T COG2875          63 EIIDLMVDAVREGKDVVRLHSGDPSI--YGALAEQMRE-LEALGIPYEVVPGVSSFAAAAA  120 (254)
T ss_pred             HHHHHHHHHHHCCCEEEEEECCCHHH--HHHHHHHHHH-HHHCCCCEEEECCCHHHHHHHH
T ss_conf             99999999997588089962699068--8899999999-9976998599379059999999


No 381
>TIGR01138 cysM cysteine synthase B; InterPro: IPR005858    Cysteine synthase B (O-acetylserine (thiol)-lyase, 2.5.1.47 from EC) is the enzyme responsible for the formation of cysteine from O-acetyl-serine and hydrogen sulphide with the concomitant release of acetic acid. In bacteria such two forms of the enzyme are known (genes cysK and cysM). CysM differs from CysK (IPR005859 from INTERPRO) in that it can also use thiosulphate instead of sulphide, to produce cysteine thiosulphonate instead of cysteine. ; GO: 0004124 cysteine synthase activity, 0006535 cysteine biosynthetic process from serine.
Probab=57.65  E-value=4.9  Score=20.26  Aligned_cols=115  Identities=20%  Similarity=0.244  Sum_probs=65.4

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCC
Q ss_conf             6998778989999999986421013333223323--345433332222222332232222333323--222222222222
Q gi|254780602|r   63 KYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIV--GTGAKHVIFNALMATVNMGDEVLIPRPYWV--SYPDMVALCGGI  138 (400)
Q Consensus        63 ~Y~~~~G~~~lR~aia~~~~~~~g~~~~~e~I~i--t~G~~~~l~~~~~~~~~~Gd~Vlv~~P~y~--~y~~~~~~~g~~  138 (400)
                      ++-| .|.-.=|-|++-.+.....-++.+-+|+|  |+| .-||.+++-+-+ .|=.|.+.-|.=.  .=..+.+.+|++
T Consensus        34 ~~NP-aGSVKDRpALSM~~~A~~RG~Ik~G~vlI~ATSG-NTGIALAM~aA~-~G~~~~L~MP~N~s~ERk~~~~AyGA~  110 (300)
T TIGR01138        34 GNNP-AGSVKDRPALSMILDAEKRGEIKPGDVLIEATSG-NTGIALAMVAAL-KGYKMELLMPDNVSEERKAAMKAYGAE  110 (300)
T ss_pred             CCCC-CCCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCC-CHHHHHHHHHHH-CCCEEEEECCCCCHHHHHHHHHHCCCE
T ss_conf             6599-9874315789999989855885688878971688-678999999985-594289977877457999999862954


Q ss_pred             CCCCCCCCCCCCCCHH-HHHHCCCCCCCCCEE---ECCCCCCCCCCCC
Q ss_conf             2222222223222103-331000122122012---1135421000012
Q gi|254780602|r  139 PVFVDTQQDDNFQVSP-EKLEQAITPKTKWLF---LNSPSNPSGVVYS  182 (400)
Q Consensus       139 ~~~v~~~~~~~~~~d~-~~l~~~i~~~~k~i~---l~nP~NPTG~v~s  182 (400)
                      .+-+.-.+.-..-.|+ ++|.+.-.  -|-++   ++||.||....+|
T Consensus       111 L~L~~~~~G~~GA~~l~~~l~~~~~--~Kyv~LDQf~Np~Np~AHy~s  156 (300)
T TIGR01138       111 LILVDKEEGMEGARDLARELVQKGE--GKYVLLDQFNNPDNPKAHYYS  156 (300)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHCC--CCEEEEEECCCCCCCCCCEEE
T ss_conf             8984423561568999999997379--856997405698886455331


No 382
>TIGR01428 HAD_type_II haloacid dehalogenase, type II; InterPro: IPR006328   These proteins catalyze the hydrolytic dehalogenation of small L-2-haloalkanoic acids to yield the corresponding D-2-hydroxyalkanoic acids . They belong to the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases, class (subfamily) I. Note that the Type I HAD enzymes have not yet been fully characterised, but clearly utilise a substantially different catalytic mechanism and are thus unlikely to be related.; GO: 0019120 hydrolase activity acting on acid halide bonds in C-halide compounds, 0008152 metabolic process.
Probab=57.58  E-value=2.5  Score=22.00  Aligned_cols=113  Identities=21%  Similarity=0.179  Sum_probs=57.4

Q ss_pred             CCHHHHHHHHHHHHCCCCCCCCC-CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC----CCCCCCC
Q ss_conf             89999999999983887569987-789899999999864210133332233233454333322222223----3223222
Q gi|254780602|r   45 MPENVKYAVVRAMERGETKYTAV-AGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFNALMATV----NMGDEVL  119 (400)
Q Consensus        45 ~p~~i~~a~~~al~~~~~~Y~~~-~G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l~~~~~~~~----~~Gd~Vl  119 (400)
                      ..+...+.+.++..+ ..-||++ .|+..|++.         |..+    +++|||.++.+..+.....    ..=|.++
T Consensus        83 ~~~~~~~~L~~~~~~-L~p~pD~~~gL~~L~~~---------G~~l----~iLSNg~~~~~~~~~~~aGvdL~~~Fd~~l  148 (207)
T TIGR01428        83 LDEAAADRLAEAYLR-LPPHPDVPAGLRALKER---------GLRL----AILSNGSPAMLKSLVKHAGVDLDLPFDAVL  148 (207)
T ss_pred             CCHHHHHHHHHHHHC-CCCCCCCHHHHHHHHHC---------CCEE----EEECCCCHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf             898889999877635-89986618899999764---------3236----521489867899999962887530000101


Q ss_pred             C------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEECCCCCC
Q ss_conf             2------33332322222222222222222222232221033310001221220121135421
Q gi|254780602|r  120 I------PRPYWVSYPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNP  176 (400)
Q Consensus       120 v------~~P~y~~y~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~k~i~l~nP~NP  176 (400)
                      .      --|.-..|.-.++.+|..+-.|-+-..|.|  |..   .+-+-+-+.++|+=|+||
T Consensus       149 S~d~~~~YKP~P~vY~~~~~~lg~~p~ev~~Vasn~w--D~~---GA~~~G~~~~winR~~~~  206 (207)
T TIGR01428       149 SADAVRAYKPAPQVYQLALEALGVPPEEVLFVASNAW--DLG---GAKKFGFKTAWINRPGEP  206 (207)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHCCCHHHEEECCCCHH--HHH---HHHHCCCCEEEEECCCCC
T ss_conf             4131235588778888888763687878211014756--789---997769666887468888


No 383
>PRK03619 phosphoribosylformylglycinamidine synthase subunit I; Provisional
Probab=57.52  E-value=6.3  Score=19.61  Aligned_cols=58  Identities=17%  Similarity=0.171  Sum_probs=34.6

Q ss_pred             CCCCCCCC-CCCCCCCHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf             22222222-22322210333100012212201211354210000123333211122333332011
Q gi|254780602|r  138 IPVFVDTQ-QDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHI  201 (400)
Q Consensus       138 ~~~~v~~~-~~~~~~~d~~~l~~~i~~~~k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~i  201 (400)
                      ..+.+|.- -|++|..|.+.++++..++--++-.|++.||-|+..+      |+-+|.+...++-
T Consensus       133 ~~l~ipVAHgEGr~~~~~~~l~~l~~~~qi~~~Y~d~~NPNGS~~~------IAGI~~~~Grvlg  191 (223)
T PRK03619        133 EVIRIPIAHGEGNYYADEETLKELEGNGQVVFRYVDETNPNGSVND------IAGICNENGNVLG  191 (223)
T ss_pred             CEEEEEEECCCCCEECCHHHHHHHHHCCCEEEEECCCCCCCCCHHH------HHEEECCCCCEEE
T ss_conf             8898872448753355999999999789789998999999889646------5285879999988


No 384
>pfam06406 StbA StbA protein. This family consists of several bacterial StbA plasmid stability proteins.
Probab=57.46  E-value=3.7  Score=21.02  Aligned_cols=27  Identities=19%  Similarity=0.220  Sum_probs=14.9

Q ss_pred             CCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             46544322344544422110122687531
Q gi|254780602|r  235 NGVSKAYAMTGLRIGYAAGALSLIKSMIV  263 (400)
Q Consensus       235 ~S~SK~~~~~G~RiG~~v~~~~li~~l~~  263 (400)
                      .+.||.++-++  +|....-..+.+.+..
T Consensus       186 ~~~s~~~g~~~--iGvs~v~~~v~~~L~~  212 (318)
T pfam06406       186 EGISKIHGDSR--IGVSLVTDAVKSALAT  212 (318)
T ss_pred             CCCCEEECCCC--CCHHHHHHHHHHHHHH
T ss_conf             75440104799--7768999999999987


No 385
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=55.46  E-value=16  Score=17.09  Aligned_cols=107  Identities=22%  Similarity=0.362  Sum_probs=53.0

Q ss_pred             HHHHHHHHHHHHHCCCCCCCCCCCCCCCCC---CCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             999999998642101333322332334543---33322222223322-32222333323222222222222222222222
Q gi|254780602|r   72 PLREAIVEKFRRDNDLHYTSDQIIVGTGAK---HVIFNALMATVNMG-DEVLIPRPYWVSYPDMVALCGGIPVFVDTQQD  147 (400)
Q Consensus        72 ~lR~aia~~~~~~~g~~~~~e~I~it~G~~---~~l~~~~~~~~~~G-d~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~~  147 (400)
                      +=|..+.+...+.-+..+.   |+.+.|+.   +++.++-.+ -+-| |.+++..|+|.--                .++
T Consensus        57 eEr~~v~~~~v~~~~grvp---viaG~g~~~t~eai~lak~a-~~~Gad~il~v~PyY~k~----------------~~~  116 (299)
T COG0329          57 EERKEVLEAVVEAVGGRVP---VIAGVGSNSTAEAIELAKHA-EKLGADGILVVPPYYNKP----------------SQE  116 (299)
T ss_pred             HHHHHHHHHHHHHHCCCCC---EEEECCCCCHHHHHHHHHHH-HHCCCCEEEEECCCCCCC----------------CHH
T ss_conf             9999999999999689777---89862877799999999999-970999999848978898----------------979


Q ss_pred             CCCCCHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCC
Q ss_conf             32221033310001221220121135421000012333321112233333201110122
Q gi|254780602|r  148 DNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDI  206 (400)
Q Consensus       148 ~~~~~d~~~l~~~i~~~~k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~  206 (400)
                      + ..-.+..+.++.  +..+++.|+| +.||..++.+.+.++++    +.++.=|=|..
T Consensus       117 g-l~~hf~~ia~a~--~lPvilYN~P-~~tg~~l~~e~i~~la~----~~nivgiKd~~  167 (299)
T COG0329         117 G-LYAHFKAIAEAV--DLPVILYNIP-SRTGVDLSPETIARLAE----HPNIVGVKDSS  167 (299)
T ss_pred             H-HHHHHHHHHHHC--CCCEEEEECC-CCCCCCCCHHHHHHHHC----CCCEEEEEECC
T ss_conf             9-999999999851--8998999787-52489999999999827----89889998478


No 386
>COG4050 Uncharacterized protein conserved in archaea [Function unknown]
Probab=54.96  E-value=17  Score=17.04  Aligned_cols=42  Identities=17%  Similarity=0.281  Sum_probs=34.0

Q ss_pred             HHHHHHHHHHCCEEEECCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHCC
Q ss_conf             99999999873979983502289972899962999999999999999998609
Q gi|254780602|r  348 LDFVNGLLEIEKVAVVQGSSFGHGPSIRISYAVSDAILEEACVRIKRFCHSLQ  400 (400)
Q Consensus       348 ~~~~~~Ll~~~gV~v~pG~~Fg~~~~iRis~~~~~e~l~~al~rl~~~l~~l~  400 (400)
                      -||+.+|+++.||-+           +++-|-.++|+-..-+++|.+||++|.
T Consensus       107 NEl~~ylvR~k~iPi-----------LelkYP~s~Eea~~~VnkI~~FL~sLe  148 (152)
T COG4050         107 NELCVYLVRRKGIPI-----------LELKYPRSEEEAIDFVNKIANFLKSLE  148 (152)
T ss_pred             CHHHHHHHHHCCCCE-----------EEEECCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             267888764269843-----------887578867999999999999998666


No 387
>pfam09885 DUF2112 Uncharacterized protein conserved in archaea (DUF2112). This domain, found in various hypothetical archaeal proteins, has no known function.
Probab=54.57  E-value=17  Score=17.00  Aligned_cols=42  Identities=14%  Similarity=0.252  Sum_probs=33.8

Q ss_pred             HHHHHHHHHHHCCEEEECCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHC
Q ss_conf             89999999987397998350228997289996299999999999999999860
Q gi|254780602|r  347 DLDFVNGLLEIEKVAVVQGSSFGHGPSIRISYAVSDAILEEACVRIKRFCHSL  399 (400)
Q Consensus       347 ~~~~~~~Ll~~~gV~v~pG~~Fg~~~~iRis~~~~~e~l~~al~rl~~~l~~l  399 (400)
                      .-|+...|+++.+|=           -+.+.|-.++++...-+.++.+||++|
T Consensus       102 tneL~~~lir~k~iP-----------iLEl~YP~~~e~~~~~V~~i~~FL~~L  143 (143)
T pfam09885       102 TNELTKFLIRQKGIP-----------ILELAYPTNEEEAINFVDKINDFLESL  143 (143)
T ss_pred             HHHHHHHHHHHCCCC-----------EEEEECCCCHHHHHHHHHHHHHHHHCC
T ss_conf             889999998626985-----------388767897468999999999998609


No 388
>TIGR01814 kynureninase kynureninase; InterPro: IPR010111   This entry describes kynureninase, it is a pyridoxal-5'-phosphate (PLP)-dependent enzyme that catalyzes the hydrolytic cleavage of L-kynurenine to anthranilic acid and L-alanine. Kynurinine is a Trp breakdown product and a precursor for NAD. This reaction is a key step in the catabolism of L-tryptophan by Pseudomonas fluorescens and some other bacteria (1). In fungi and vertebrates, kynurenine is first hydroxylated to 3-hydroxykynurenine, which is the preferred substrate of kynureninase in those organisms, resulting in 3-hydroxyanthranilate and L-alanine.   Sequence alignment with other PLP-dependent enzymes indicated that kynureninase is in subgroup IVa of the aminotransferases, along with nifS, CsdB, and serine-pyruvate aminotransferase, which suggests that kynureninase has an aminotransferase fold .; GO: 0030170 pyridoxal phosphate binding, 0030429 kynureninase activity, 0006569 tryptophan catabolic process, 0009435 NAD biosynthetic process, 0005737 cytoplasm.
Probab=53.61  E-value=2.9  Score=21.63  Aligned_cols=164  Identities=14%  Similarity=0.218  Sum_probs=89.6

Q ss_pred             CCEEECCCCCCCC-CCCHHHHHHHHHHHHC-------CCC------CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf             9726656589749-8899999999999838-------875------6998778989999999986421013333223323
Q gi|254780602|r   31 IDVLCLTAGEPDF-DMPENVKYAVVRAMER-------GET------KYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIV   96 (400)
Q Consensus        31 ~~ii~l~~G~p~~-~~p~~i~~a~~~al~~-------~~~------~Y~~~~G~~~lR~aia~~~~~~~g~~~~~e~I~i   96 (400)
                      .++|-|.  | ++ -.|..+.+++.+.++.       +..      +-.|.--.++.-..+...   -  +--.+++|++
T Consensus        37 ~~~iYL~--N-SLal~pk~~~~~~~~~lD~W~~~~~~~~~khPee~~~~pW~~~~~~~~~l~~~---v--lvA~~~evv~  108 (444)
T TIGR01814        37 NEVIYLD--N-SLALMPKSAREALKEILDKWAKLAVESHNKHPEEVGKVPWFTLDEALLKLLAD---V--LVAQEKEVVV  108 (444)
T ss_pred             CCEEEEE--C-CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCCCCHHHHCCCCH---H--EECCCCCEEE
T ss_conf             8779700--4-11236899999999998768999987520571003678862034535314310---0--1116653663


Q ss_pred             CCCCCCCCCCCCCCCCCC--CC-----CCCCCCCCCCC--C--CCCCCCCCCCC----CCCCCCC-CCCCCCHHHHHH--
Q ss_conf             345433332222222332--23-----22223333232--2--22222222222----2222222-232221033310--
Q gi|254780602|r   97 GTGAKHVIFNALMATVNM--GD-----EVLIPRPYWVS--Y--PDMVALCGGIP----VFVDTQQ-DDNFQVSPEKLE--  158 (400)
Q Consensus        97 t~G~~~~l~~~~~~~~~~--Gd-----~Vlv~~P~y~~--y--~~~~~~~g~~~----~~v~~~~-~~~~~~d~~~l~--  158 (400)
                      +|..+-=|+.++.++..|  .|     .||.+.-+||.  |  +...++.|..+    +.+...+ |+  .+..+++.  
T Consensus       109 ~nslT~NLh~ll~~Fy~pqredt~~R~kIL~E~~aFPSD~Ya~e~Q~~L~g~~~e~~l~~~~p~~~e~--tLr~~di~~~  186 (444)
T TIGR01814       109 MNSLTVNLHKLLASFYKPQREDTEKRTKILLEAKAFPSDLYAIESQLRLHGLEPEEHLVQVEPREAEE--TLRLEDILDT  186 (444)
T ss_pred             ECHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEECCCCC--HHHHHHHHHH
T ss_conf             00433889999998707542477334575651678872799999997467987344126774223442--1107889999


Q ss_pred             -CCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCC
Q ss_conf             -00122122012113542100001233332111223333320111012211
Q gi|254780602|r  159 -QAITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYE  208 (400)
Q Consensus       159 -~~i~~~~k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~  208 (400)
                       +...++.-+|++++=+==||..++   +.+|.+. +++.+.+++.|=||+
T Consensus       187 iE~~~D~~A~v~l~~V~Y~TGQ~fD---m~~~t~~-a~~~~~~~vfDLAHa  233 (444)
T TIGR01814       187 IEKNGDEIALVLLSGVQYYTGQLFD---MRAITRA-AHKRGAIVVFDLAHA  233 (444)
T ss_pred             HHHCCCCEEEEEECCCCCCHHHHHH---HHHHHHH-HHCCCCEEEEEHHHH
T ss_conf             9853897899984784430236789---9999999-708976599602221


No 389
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase; InterPro: IPR012689    This entry represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway.; GO: 0018802 24-dihydroxyhept-2-ene-17-dioate aldolase activity, 0010124 phenylacetate catabolic process.
Probab=53.39  E-value=11  Score=18.02  Aligned_cols=20  Identities=10%  Similarity=0.208  Sum_probs=14.4

Q ss_pred             EEEECCHHHHHHHHHHHHHH
Q ss_conf             99629999999999999999
Q gi|254780602|r  376 ISYAVSDAILEEACVRIKRF  395 (400)
Q Consensus       376 is~~~~~e~l~~al~rl~~~  395 (400)
                      ++.+.+.--|..|.++|.+-
T Consensus       228 vAvGVDt~LL~rg~~~L~~~  247 (249)
T TIGR02311       228 VAVGVDTTLLARGAEALAAR  247 (249)
T ss_pred             EEECCHHHHHHHHHHHHHHH
T ss_conf             98521389999999999986


No 390
>TIGR03271 methan_mark_5 putative methanogenesis marker protein 5. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=53.06  E-value=18  Score=16.85  Aligned_cols=42  Identities=17%  Similarity=0.188  Sum_probs=33.6

Q ss_pred             HHHHHHHHHHHCCEEEECCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHC
Q ss_conf             89999999987397998350228997289996299999999999999999860
Q gi|254780602|r  347 DLDFVNGLLEIEKVAVVQGSSFGHGPSIRISYAVSDAILEEACVRIKRFCHSL  399 (400)
Q Consensus       347 ~~~~~~~Ll~~~gV~v~pG~~Fg~~~~iRis~~~~~e~l~~al~rl~~~l~~l  399 (400)
                      .-|+...|+++.+|=           -+.+.|-.++++...-+.++.+||++|
T Consensus       101 tneL~~~lir~k~iP-----------iLEl~YP~~~ee~~~~V~~i~~FL~~L  142 (142)
T TIGR03271       101 TNELTVFLVRRKDIP-----------ILELDYPTSEEEGIIFVRKINDFLDSL  142 (142)
T ss_pred             HHHHHHHHHHHCCCC-----------EEEEECCCCHHHHHHHHHHHHHHHHCC
T ss_conf             889999998726985-----------388657897258999999999998609


No 391
>TIGR00674 dapA dihydrodipicolinate synthase; InterPro: IPR005263   Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta-semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue . Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC, IPR005264 from INTERPRO) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Sinorhizobium meliloti protein mosA , which is involved in the biosynthesis of the rhizopine 3-O-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry . Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.   This family represents a subclass of dihydrodipicolinate synthase. ; GO: 0008840 dihydrodipicolinate synthase activity, 0019877 diaminopimelate biosynthetic process.
Probab=51.71  E-value=2.9  Score=21.62  Aligned_cols=115  Identities=19%  Similarity=0.256  Sum_probs=58.2

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCC--CCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             75699877898999999998642101333322--332334543---3332222222332232222333323222222222
Q gi|254780602|r   61 ETKYTAVAGISPLREAIVEKFRRDNDLHYTSD--QIIVGTGAK---HVIFNALMATVNMGDEVLIPRPYWVSYPDMVALC  135 (400)
Q Consensus        61 ~~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~e--~I~it~G~~---~~l~~~~~~~~~~Gd~Vlv~~P~y~~y~~~~~~~  135 (400)
                      .||=+++.-+.|-.+ +-++-.     +...+  .|+.+.||.   ++|.++-.+==-+=|-+++.+|+|.    -....
T Consensus        41 TTGEs~TLs~EE~~~-~i~~~~-----~~~~~R~pvIaG~GsN~T~Eai~l~~~a~~~G~dg~L~vtPyYN----KP~q~  110 (288)
T TIGR00674        41 TTGESATLSHEEHKK-VIEFVV-----DLVKGRVPVIAGTGSNATEEAIELTKFAEKLGVDGFLVVTPYYN----KPTQE  110 (288)
T ss_pred             CCCCCCCCCHHHHHH-HHHHHH-----HHHCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCC----CCCCC
T ss_conf             558864468888899-999998-----77628778985377325899999999998689568845887551----88821


Q ss_pred             CCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECC
Q ss_conf             222222222222322210333100012212201211354210000123333211122333332011101
Q gi|254780602|r  136 GGIPVFVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISD  204 (400)
Q Consensus       136 g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~D  204 (400)
                      |             ..--++++.+.. +.+ .|+.|.|+ =||..+.+|...+|++.+   .||.=|=|
T Consensus       111 G-------------l~~HFkaia~~~-~lP-iiLYNvPs-RTg~~l~peTv~rLA~~~---~NI~aiKE  160 (288)
T TIGR00674       111 G-------------LYQHFKAIAEEV-DLP-IILYNVPS-RTGVSLEPETVKRLAEEP---NNIVAIKE  160 (288)
T ss_pred             H-------------HHHHHHHHHHHC-CCC-EEEECCCC-CCCCCCCHHHHHHHHCCC---CCEEEEEE
T ss_conf             3-------------899999999871-698-89842876-410178628999973016---77068872


No 392
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B  (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20).  The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits.  Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff.  Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in 
Probab=50.15  E-value=3.4  Score=21.21  Aligned_cols=26  Identities=8%  Similarity=0.125  Sum_probs=14.5

Q ss_pred             HHHHHHHHHHHHHHCCCCEEECCCCC
Q ss_conf             89999999999998699726656589
Q gi|254780602|r   15 ATLVAAQRVRDLRSKGIDVLCLTAGE   40 (400)
Q Consensus        15 ~~~~~~~~~~~~~~~g~~ii~l~~G~   40 (400)
                      +.-.|.+.++.|..-...++++.+-+
T Consensus        16 ~~~~ik~~id~ma~~KlN~lH~HLtD   41 (348)
T cd06562          16 SVDSIKRTIDAMAYNKLNVLHWHITD   41 (348)
T ss_pred             CHHHHHHHHHHHHHHCCCEEEEEEEC
T ss_conf             89999999999998389567885764


No 393
>PRK13129 consensus
Probab=48.29  E-value=21  Score=16.39  Aligned_cols=38  Identities=24%  Similarity=0.330  Sum_probs=19.8

Q ss_pred             HHHHHHHCCCCEEECCCCCCCCCC--CHHHHHHHHHHHHCC
Q ss_conf             999999869972665658974988--999999999998388
Q gi|254780602|r   22 RVRDLRSKGIDVLCLTAGEPDFDM--PENVKYAVVRAMERG   60 (400)
Q Consensus        22 ~~~~~~~~g~~ii~l~~G~p~~~~--p~~i~~a~~~al~~~   60 (400)
                      .++++...|.|+|-+++=..| |.  -|-|++|-.+|+++|
T Consensus        38 ~~~~l~~~GaDiiEiGiPfSD-P~ADGpvIq~A~~~AL~~G   77 (267)
T PRK13129         38 ALLILQENGADLIELGIPYSD-PLADGPVIQAAATRALQSG   77 (267)
T ss_pred             HHHHHHHCCCCEEEECCCCCC-CCCCCHHHHHHHHHHHHCC
T ss_conf             999999779999997998888-7765899999999999769


No 394
>pfam08885 GSCFA GSCFA family. This family of proteins are functionally uncharacterized. They have been named GSCFA after a highly conserved N-terminal motif in the alignment.
Probab=46.56  E-value=16  Score=17.17  Aligned_cols=82  Identities=17%  Similarity=0.211  Sum_probs=44.3

Q ss_pred             HHHHHHCCCCEEECCC---CCCCCCCCHHHHHHHHHHHHCCCC----------CCC-----CCC---CCHHHHHHHHHHH
Q ss_conf             9999986997266565---897498899999999999838875----------699-----877---8989999999986
Q gi|254780602|r   23 VRDLRSKGIDVLCLTA---GEPDFDMPENVKYAVVRAMERGET----------KYT-----AVA---GISPLREAIVEKF   81 (400)
Q Consensus        23 ~~~~~~~g~~ii~l~~---G~p~~~~p~~i~~a~~~al~~~~~----------~Y~-----~~~---G~~~lR~aia~~~   81 (400)
                      .+.+...|-++....+   |+- + .|..+.+.+.+++.....          .|-     ...   -..++++.+.+.+
T Consensus        15 ~~~L~~~~f~~~~~e~npfGni-Y-np~si~q~l~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~s~~el~~~~~~~~   92 (251)
T pfam08885        15 GRKLAYRGFNVLDAESNPFGNI-Y-TPRSILQLLRRALGKKSFTEADIWEQDGRWHDFLAHSPFGFASEEELLAARNEHL   92 (251)
T ss_pred             HHHHHHCCCCCCCCCCCCCEEE-E-CHHHHHHHHHHHHCCCCCCHHHHHHCCCEEECHHHCCCCCCCCHHHHHHHHHHHH
T ss_conf             9999985999564343675057-4-6999999999995577788889743488787554438655699999999999999


Q ss_pred             HHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             4210133332233233454333322
Q gi|254780602|r   82 RRDNDLHYTSDQIIVGTGAKHVIFN  106 (400)
Q Consensus        82 ~~~~g~~~~~e~I~it~G~~~~l~~  106 (400)
                      ......=-+.+.+++|-|.+++-..
T Consensus        93 ~~~~~~l~~ad~~iiTLG~~e~w~~  117 (251)
T pfam08885        93 AEVRAQLKEADVFVFTLGLAEAWRD  117 (251)
T ss_pred             HHHHHHHHHCCEEEEECCCEEEEEE
T ss_conf             9999999758999998687248998


No 395
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=46.02  E-value=8.6  Score=18.77  Aligned_cols=11  Identities=18%  Similarity=0.262  Sum_probs=4.2

Q ss_pred             CCCCCCCCCCC
Q ss_conf             33332111223
Q gi|254780602|r  183 QNRLRALADVL  193 (400)
Q Consensus       183 ~~~l~~i~~~~  193 (400)
                      +++.+++++.+
T Consensus       246 rk~~e~la~~L  256 (607)
T PRK11057        246 RAKVEDTAARL  256 (607)
T ss_pred             HHHHHHHHHHH
T ss_conf             89999999999


No 396
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase; InterPro: IPR005913    dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen.  dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH  ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process.
Probab=45.16  E-value=6.1  Score=19.70  Aligned_cols=130  Identities=19%  Similarity=0.227  Sum_probs=72.2

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCC-CCCCEEECC------------CC
Q ss_conf             22223322322223333232222222222222222222223222103331000122-122012113------------54
Q gi|254780602|r  108 LMATVNMGDEVLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQAITP-KTKWLFLNS------------PS  174 (400)
Q Consensus       108 ~~~~~~~Gd~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~-~~k~i~l~n------------P~  174 (400)
                      ...+.++|..+++.+=     ..-+.. +.+...+++.       |+|.|.+.+++ ++.+|+ |+            |+
T Consensus        16 ~~~l~~~g~~~~~~~~-----~~~~~~-~~~~~~~Dl~-------dP~~l~~~~r~~~Pd~vv-ntAAYT~VD~AE~~~~   81 (317)
T TIGR01214        16 VQQLSKPGRVVVALTR-----STRLKL-AARWSQLDLT-------DPEALEELLRAIRPDAVV-NTAAYTDVDGAESDPE   81 (317)
T ss_pred             HHHCCCCCCEEEEECC-----CCCCCH-HHHHHHHCCC-------CHHHHHHHHHHHCCCEEE-ECCHHCCCCCCCCCHH
T ss_conf             9970788827864368-----777611-3365440622-------468899999852875376-2301101000037777


Q ss_pred             -----CCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCC-CCCCCC----CCCCCCCCCCCCCCCEEEEECCCCCCCC--
Q ss_conf             -----2100001233332111223333320111012211-000001----2233222111233322574146544322--
Q gi|254780602|r  175 -----NPSGVVYSQNRLRALADVLVRNPHVHIISDDIYE-HIVYRN----CQFSNIVNVEPSLYERTLVVNGVSKAYA--  242 (400)
Q Consensus       175 -----NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~-~l~~~~----~~~~s~~~~~~~~~~~~i~~~S~SK~~~--  242 (400)
                           |=+|       -+.|+++|++ +|+++|.   || |.+|||    ....+...-+   .-|=+-+++-||..|  
T Consensus        82 ~AyavNa~A-------~~~lA~~A~~-~Ga~~vh---~STDYVFDGdfGG~~~~PY~e~D---~~nPlnvYG~SK~~GE~  147 (317)
T TIGR01214        82 KAYAVNALA-------PQNLARAAAR-VGARLVH---ISTDYVFDGDFGGEGKRPYREDD---ETNPLNVYGQSKLAGEQ  147 (317)
T ss_pred             HHHHHHHHH-------HHHHHHHHHH-CCCEEEE---EEECEEECCCCCCCCCCCCCCCC---CCCCCCCCCHHHHHHHH
T ss_conf             876574078-------9999999986-6915999---86342344755788866887646---87984312111568999


Q ss_pred             -----CC--C---CCCCCCCC--H---HHHHHHHHHHC
Q ss_conf             -----34--4---54442211--0---12268753100
Q gi|254780602|r  243 -----MT--G---LRIGYAAG--A---LSLIKSMIVLQ  265 (400)
Q Consensus       243 -----~~--G---~RiG~~v~--~---~~li~~l~~~~  265 (400)
                           ++  -   +|+.|+.+  .   .++++.|.++.
T Consensus       148 a~~~~~~~e~~lIvRTsWlY~~~g~~g~NF~~tMlrLa  185 (317)
T TIGR01214       148 AVRAAGPDENALIVRTSWLYGAGGGSGRNFVKTMLRLA  185 (317)
T ss_pred             HHHHHCCCCCEEEEEEEEEECCCCCCCCCHHHHHHHHC
T ss_conf             99983799857889852134489988421799999853


No 397
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin.  Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=44.47  E-value=5.4  Score=20.02  Aligned_cols=25  Identities=4%  Similarity=-0.047  Sum_probs=12.6

Q ss_pred             HHHHHHHHHHHHHCCCCEEECCCCC
Q ss_conf             9999999999998699726656589
Q gi|254780602|r   16 TLVAAQRVRDLRSKGIDVLCLTAGE   40 (400)
Q Consensus        16 ~~~~~~~~~~~~~~g~~ii~l~~G~   40 (400)
                      .-.|.+....|..-...++++.+-+
T Consensus        17 ~~~ik~~id~ma~~KlN~lH~HltD   41 (357)
T cd06563          17 VDEVKRFIDLMALYKLNVFHWHLTD   41 (357)
T ss_pred             HHHHHHHHHHHHHHCCCEEEEEEEC
T ss_conf             9999999999998189478897754


No 398
>KOG1256 consensus
Probab=44.20  E-value=25  Score=16.00  Aligned_cols=93  Identities=20%  Similarity=0.369  Sum_probs=45.8

Q ss_pred             CEEECCC--CCCCCCCCCCCCCCCCCCC---CCCCCCCEEEC-CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCC
Q ss_conf             0121135--4210000123333211122---33333201110-1221100000122332221112333225741465443
Q gi|254780602|r  167 WLFLNSP--SNPSGVVYSQNRLRALADV---LVRNPHVHIIS-DDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKA  240 (400)
Q Consensus       167 ~i~l~nP--~NPTG~v~s~~~l~~i~~~---~a~~~~i~ii~-De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~  240 (400)
                      .|+.++-  .||-|..+|...+-..+..   +.+........ ||+|          .|++.+. .+++|++....+   
T Consensus       259 tI~yTSGTTG~PKGVMLTH~Niv~~v~~~~~~~~~~~~~~~~~~dv~----------lSyLPLA-Hi~er~~~~~~~---  324 (691)
T KOG1256         259 TICYTSGTTGNPKGVMLTHRNIVSDVAGIFFLSAAENAKATVGDDVY----------LSYLPLA-HIFERVVELYTF---  324 (691)
T ss_pred             EEEECCCCCCCCCEEEEECCCEEEHHHHHHHHHHCCCCCCCCCCCEE----------EEECCHH-HHHHHHHHHHHH---
T ss_conf             99974799889855897633211002334443321420126667158----------9807499-999999998664---


Q ss_pred             CCCCCCCCCCCCCHH-HHHHHHHHHCCCCCCCCCCC
Q ss_conf             223445444221101-22687531001222332222
Q gi|254780602|r  241 YAMTGLRIGYAAGAL-SLIKSMIVLQGQQTSGACSI  275 (400)
Q Consensus       241 ~~~~G~RiG~~v~~~-~li~~l~~~~~~~~~~~~~~  275 (400)
                        .-|-+|||.-++. .+.+.+..++-....++|.+
T Consensus       325 --~~G~~IgF~~gD~~~l~~dlk~lkPT~f~~VPRV  358 (691)
T KOG1256         325 --YIGAKIGFARGDILKLTDDLKELKPTVFPGVPRV  358 (691)
T ss_pred             --HCCCEEEEECCCHHHHHHHHHHHCCCEEECCHHH
T ss_conf             --1044899962876777899997589477232668


No 399
>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee
Probab=44.07  E-value=25  Score=15.99  Aligned_cols=50  Identities=16%  Similarity=0.232  Sum_probs=33.9

Q ss_pred             HHHHHHHHHCCEEEEC-CCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHC
Q ss_conf             9999999873979983-50228997289996299999999999999999860
Q gi|254780602|r  349 DFVNGLLEIEKVAVVQ-GSSFGHGPSIRISYAVSDAILEEACVRIKRFCHSL  399 (400)
Q Consensus       349 ~~~~~Ll~~~gV~v~p-G~~Fg~~~~iRis~~~~~e~l~~al~rl~~~l~~l  399 (400)
                      .++..| .+.||.|-= -...+.++...|+|+.+.+++++|++.|++..+.|
T Consensus        18 ~iF~~L-a~~~InVDmIvQ~~~~~~~~disFTv~~~dl~~a~~vl~~~~~~l   68 (75)
T cd04913          18 KIFGAL-AEANINVDMIVQNVSRDGTTDISFTVPKSDLKKALAVLEKLKKEL   68 (75)
T ss_pred             HHHHHH-HHCCCCEEEEEECCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHC
T ss_conf             999999-985984799986167899458999904999999999999999864


No 400
>TIGR01591 Fdh-alpha formate dehydrogenase, alpha subunit; InterPro: IPR006478   This group of sequences describe a subset of formate dehydrogenase alpha chains found mainly in the archaea but also in alpha and gamma proteobacteria and a small number of Gram-positive bacteria. The alpha chain contains domains for molybdopterin dinucleotide binding and molybdopterin oxidoreductase. The holo-enzyme also contains beta and gamma subunits. The enzyme catalyzes the oxidation of formate (produced from pyruvate during anaerobic growth) to carbon dioxide with the concomitant release of two electrons and two protons. The enzyme's purpose is to allow growth on formate in some circumstances  and, in the case of FdhH in gamma proteobacteria, to pass electrons to hydrogenase (by which process acid is neutralized) . The alpha subunit of a version of nitrate reductase is closely related.; GO: 0008863 formate dehydrogenase activity, 0015942 formate metabolic process, 0009326 formate dehydrogenase complex.
Probab=43.87  E-value=12  Score=17.98  Aligned_cols=56  Identities=18%  Similarity=0.401  Sum_probs=33.9

Q ss_pred             CCCCCCCCCCHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECC
Q ss_conf             22222322210333100012212201211354210000123333211122333332011101
Q gi|254780602|r  143 DTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISD  204 (400)
Q Consensus       143 ~~~~~~~~~~d~~~l~~~i~~~~k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~D  204 (400)
                      +|+.+.|+.+ +|.++++...+.|++|+.+ -||   ++|..+..++.+.+ ++-+++|+-|
T Consensus       378 ~L~~~~GL~I-pe~~da~~~G~~kalYI~G-Edp---~~sDp~~~~V~~aL-~~lellVVqD  433 (694)
T TIGR01591       378 KLPAEPGLRI-PEMIDAALDGDLKALYIVG-EDP---VISDPDTKKVRKAL-EKLELLVVQD  433 (694)
T ss_pred             CCCCCCCCCC-HHHHHHHHCCCEEEEEEEC-CCC---EEECCCHHHHHHHH-HCCCEEEEEC
T ss_conf             1866889732-2378998549716999835-850---22379858999897-5386379707


No 401
>TIGR02397 dnaX_nterm DNA polymerase III, subunits gamma and tau; InterPro: IPR012763    This entry represents the well-conserved first N-terminal domain of DnaX, approx. 365 aa. The full-length product of the dnaX gene in Escherichia coli encodes the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the extreme thermophile Thermus thermophilis.; GO: 0003887 DNA-directed DNA polymerase activity, 0005524 ATP binding, 0006260 DNA replication, 0009360 DNA polymerase III complex.
Probab=42.57  E-value=9.9  Score=18.41  Aligned_cols=39  Identities=18%  Similarity=0.379  Sum_probs=22.3

Q ss_pred             HHHHHHHHHHHHCCC--CCC--CCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf             999999999983887--569--98778989999999986421013
Q gi|254780602|r   47 ENVKYAVVRAMERGE--TKY--TAVAGISPLREAIVEKFRRDNDL   87 (400)
Q Consensus        47 ~~i~~a~~~al~~~~--~~Y--~~~~G~~~lR~aia~~~~~~~g~   87 (400)
                      ++|+++++.|+..+.  |.|  +.++|.=  +..+|+-+.+-.+.
T Consensus        20 ~~iv~tL~NAi~~~ri~HAYLF~GpRGtG--KTS~ARIfAKaLNC   62 (363)
T TIGR02397        20 EHIVKTLKNAIKNGRIAHAYLFSGPRGTG--KTSIARIFAKALNC   62 (363)
T ss_pred             HHHHHHHHHHHHHCCCCCEEEECCCCCCC--HHHHHHHHHHHHCC
T ss_conf             79999999999718966234502859976--35589999998658


No 402
>TIGR01991 HscA Fe-S protein assembly chaperone HscA; InterPro: IPR010236   Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron. These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] . FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems.   The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins , . It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly .   The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA . SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA , acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets.   In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins . Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen .   This entry represents the HscA chaperone protein from the SUF system. HscA (or Hsc66) is a specialised bacterial Hsp70-class molecular chaperone that participates in the assembly of iron-sulphur cluster proteins. HscA resembles DnaK, but belongs to a separate clade. HscA interacts with IscU, which is believed to serve as a template for Fe-S cluster formation. The HscA-IscU interaction is facilitated by the J-type co-chaperone protein HscB (or Hsc20), which binds to both HscA and IscU, bringing them into contact with each other. HscA recognises a conserved LPPVK sequence motif at positions 99-103 of IscU .; GO: 0005524 ATP binding, 0016887 ATPase activity, 0051082 unfolded protein binding, 0016226 iron-sulfur cluster assembly.
Probab=40.87  E-value=28  Score=15.69  Aligned_cols=26  Identities=27%  Similarity=0.520  Sum_probs=12.8

Q ss_pred             CHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf             98999999998642101333322332
Q gi|254780602|r   70 ISPLREAIVEKFRRDNDLHYTSDQII   95 (400)
Q Consensus        70 ~~~lR~aia~~~~~~~g~~~~~e~I~   95 (400)
                      .|..|++|+.++.+.-=.+++||+|+
T Consensus       352 vp~Vr~~VaelFg~~PL~~ldPD~VV  377 (628)
T TIGR01991       352 VPKVREAVAELFGREPLTDLDPDKVV  377 (628)
T ss_pred             HHHHHHHHHHHHCCCCCCCCCCCHHH
T ss_conf             16799999886377878888751424


No 403
>PRK09375 quinolinate synthetase; Provisional
Probab=40.73  E-value=28  Score=15.67  Aligned_cols=50  Identities=14%  Similarity=0.181  Sum_probs=27.8

Q ss_pred             HHHHHHHHHHHHHHCCC-----CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             89999999986421013-----3332233233454333322222223322322223333
Q gi|254780602|r   71 SPLREAIVEKFRRDNDL-----HYTSDQIIVGTGAKHVIFNALMATVNMGDEVLIPRPY  124 (400)
Q Consensus        71 ~~lR~aia~~~~~~~g~-----~~~~e~I~it~G~~~~l~~~~~~~~~~Gd~Vlv~~P~  124 (400)
                      ||. +.+|++....+.+     +.+ .++++..|..- +.-. ..+++|+.+|++|+|.
T Consensus        46 ~eI-q~iAD~vGDSl~La~~A~~~~-a~~IVfcGV~F-MAEt-AkIL~P~k~VllPd~~  100 (323)
T PRK09375         46 PEI-QDLADFTGDSLELARFAAETD-ADTIVFCGVHF-MAET-AKILSPEKTVLLPDLE  100 (323)
T ss_pred             HHH-HHHHHHHCCHHHHHHHHHHCC-CCEEEEECCEE-HHHH-HHHHCCCCCEECCCCC
T ss_conf             899-999886365899999997589-99899957443-3866-8872999815557867


No 404
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of  the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin.  Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=40.25  E-value=6.2  Score=19.65  Aligned_cols=26  Identities=12%  Similarity=0.202  Sum_probs=14.0

Q ss_pred             HHHHHHHHHHHHHHCCCCEEECCCCC
Q ss_conf             89999999999998699726656589
Q gi|254780602|r   15 ATLVAAQRVRDLRSKGIDVLCLTAGE   40 (400)
Q Consensus        15 ~~~~~~~~~~~~~~~g~~ii~l~~G~   40 (400)
                      +.-.|.+.+..|......++++.+-+
T Consensus        16 ~~~~ik~~iD~ma~~KlN~lH~HltD   41 (311)
T cd06570          16 PVAVIKRQLDAMASVKLNVFHWHLTD   41 (311)
T ss_pred             CHHHHHHHHHHHHHHCCCEEEEEEEC
T ss_conf             89999999999998289578885864


No 405
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides.  These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase.  The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=39.14  E-value=6.6  Score=19.47  Aligned_cols=26  Identities=8%  Similarity=-0.013  Sum_probs=13.3

Q ss_pred             CHHHHHHHHHHHHHHCCCCEEECCCC
Q ss_conf             58999999999999869972665658
Q gi|254780602|r   14 SATLVAAQRVRDLRSKGIDVLCLTAG   39 (400)
Q Consensus        14 s~~~~~~~~~~~~~~~g~~ii~l~~G   39 (400)
                      .+.-.+.+..+.|..-...++++.+-
T Consensus        13 ~~~~~ik~~id~ma~~K~N~lh~Hlt   38 (303)
T cd02742          13 LSVESIKRTIDVLARYKINTFHWHLT   38 (303)
T ss_pred             CCHHHHHHHHHHHHHHCCCEEEEEEE
T ss_conf             38999999999999828977889887


No 406
>TIGR02727 MTHFS_bact 5,10-methenyltetrahydrofolate synthetase; InterPro: IPR002698 5-formyltetrahydrofolate cyclo-ligase or methenyl-THF synthetase 6.3.3.2 from EC catalyses the interchange of 5-formyltetrahydrofolate (5-FTHF) to 5-10-methenyltetrahydrofolate, this requires ATP and Mg^2+ . 5-FTHF is used in chemotherapy where it is clinically known as Leucovorin .; GO: 0005524 ATP binding, 0030272 5-formyltetrahydrofolate cyclo-ligase activity, 0009396 folic acid and derivative biosynthetic process.
Probab=39.01  E-value=21  Score=16.38  Aligned_cols=10  Identities=50%  Similarity=1.195  Sum_probs=4.6

Q ss_pred             CCCCCCCCCC
Q ss_conf             4454442211
Q gi|254780602|r  244 TGLRIGYAAG  253 (400)
Q Consensus       244 ~G~RiG~~v~  253 (400)
                      -|.|+||--|
T Consensus       129 ~G~RlGyGgG  138 (183)
T TIGR02727       129 RGYRLGYGGG  138 (183)
T ss_pred             CCCEEECCCC
T ss_conf             8867405687


No 407
>PRK04210 phosphoenolpyruvate carboxykinase; Provisional
Probab=38.85  E-value=26  Score=15.87  Aligned_cols=22  Identities=14%  Similarity=0.099  Sum_probs=11.7

Q ss_pred             EECCHHHHHHHHHHHHHHHHHC
Q ss_conf             6299999999999999999860
Q gi|254780602|r  378 YAVSDAILEEACVRIKRFCHSL  399 (400)
Q Consensus       378 ~~~~~e~l~~al~rl~~~l~~l  399 (400)
                      |+.+.+...+-+++++++++++
T Consensus       568 ~~vd~~~w~~e~~~~~~~~~~~  589 (610)
T PRK04210        568 FSVDVDEWLAELELIEELFEKL  589 (610)
T ss_pred             HCCCHHHHHHHHHHHHHHHHHH
T ss_conf             1968899999999999999973


No 408
>PRK08265 short chain dehydrogenase; Provisional
Probab=37.89  E-value=0.72  Score=25.33  Aligned_cols=143  Identities=19%  Similarity=0.171  Sum_probs=63.8

Q ss_pred             CCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCC---C---C
Q ss_conf             233233454333322-22222332232222333323222222222222222222222322210333100012---2---1
Q gi|254780602|r   92 DQIIVGTGAKHVIFN-ALMATVNMGDEVLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQAIT---P---K  164 (400)
Q Consensus        92 e~I~it~G~~~~l~~-~~~~~~~~Gd~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~---~---~  164 (400)
                      +.+++-+|++++|-. +...+.+.|-.|++.+=.=..-....+..|.+...+.+|-.     |.+++++.+.   +   +
T Consensus         6 gKvalVTGgs~GIG~aia~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~~~~~~Dv~-----~~~~i~~~~~~~~~~fG~   80 (261)
T PRK08265          6 GKVAIVTGGATLIGAAVARALVAAGACVAILDIDADNGAAVAASLGERARFIATDIT-----DDAAIERAVATAVARFGG   80 (261)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHCCCEEEEECCCC-----CHHHHHHHHHHHHHHHCC
T ss_conf             998999487768999999999987998999979889999999981997289981389-----999999999999998199


Q ss_pred             CCCEEECCCC--CCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCC
Q ss_conf             2201211354--21000012333321112233333201110122110000012233222111233322574146544322
Q gi|254780602|r  165 TKWLFLNSPS--NPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYA  242 (400)
Q Consensus       165 ~k~i~l~nP~--NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~  242 (400)
                      .. +++||-.  .+.+.-.+.+++++..++-..  ..+.+.-++..          .+..  .  ..++|.+.|.+=..+
T Consensus        81 iD-iLVNNAg~~~~~~~~~~~e~w~~~~~vNl~--~~~~~~q~~~~----------~m~~--~--~G~IInisS~~~~~~  143 (261)
T PRK08265         81 LD-ILVNLACTYVDDGLASSRADWLAALDVNLV--SAAMLAQAAHP----------HLKR--G--GGAIVNFTSISAKVA  143 (261)
T ss_pred             CC-EEEECCCCCCCCCCCCCHHHHHHHHHHHHH--HHHHHHHHHHH----------HHHH--C--CCEEEEEEECCCCCC
T ss_conf             87-899857557887343999999999999839--99999999999----------9987--6--977999965330457


Q ss_pred             CCCCCCCCCCCHHHH
Q ss_conf             344544422110122
Q gi|254780602|r  243 MTGLRIGYAAGALSL  257 (400)
Q Consensus       243 ~~G~RiG~~v~~~~l  257 (400)
                      .++ +..|..+...+
T Consensus       144 ~~~-~~~Y~asKaal  157 (261)
T PRK08265        144 QTG-RWLYPASKAAI  157 (261)
T ss_pred             CCC-CCHHHHHHHHH
T ss_conf             888-50679999999


No 409
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway.  The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=37.83  E-value=8.6  Score=18.77  Aligned_cols=26  Identities=8%  Similarity=0.059  Sum_probs=14.9

Q ss_pred             HHHHHHHHHHHHHHCCCCEEECCCCC
Q ss_conf             89999999999998699726656589
Q gi|254780602|r   15 ATLVAAQRVRDLRSKGIDVLCLTAGE   40 (400)
Q Consensus        15 ~~~~~~~~~~~~~~~g~~ii~l~~G~   40 (400)
                      +.-.|.+.++.|......++++.+-+
T Consensus        15 s~~~ik~~ID~Ma~~KlN~lH~HLtD   40 (326)
T cd06564          15 SMDFLKDIIKTMSWYKMNDLQLHLND   40 (326)
T ss_pred             CHHHHHHHHHHHHHCCCCEEEEEEEC
T ss_conf             89999999999998099878888867


No 410
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=37.33  E-value=11  Score=18.05  Aligned_cols=57  Identities=16%  Similarity=0.302  Sum_probs=33.8

Q ss_pred             CCCHHHHHHCCCCC-CCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE-CCCCC
Q ss_conf             22103331000122-122012113542100001233332111223333320111-01221
Q gi|254780602|r  150 FQVSPEKLEQAITP-KTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHII-SDDIY  207 (400)
Q Consensus       150 ~~~d~~~l~~~i~~-~~k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii-~De~Y  207 (400)
                      ...+.+.|.+.+.+ ++..|++--|.|..|+.- +...+.+++.+.+..++.|+ .||-|
T Consensus        36 ~~~~~~~l~~~i~~~~~~~iviG~P~~~~g~~~-~~~~~~f~~~l~~~~~i~v~~~DEr~   94 (99)
T smart00732       36 KEADAARLKKLIKKYQPDLIVIGLPLNMNGTAS-RETEEAFAELLKERFNLPVVLVDERL   94 (99)
T ss_pred             CHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCC-HHHHHHHHHHHHHCCCCCEEEEECCC
T ss_conf             269999999999984998899747524899819-99999999998517899889995897


No 411
>PRK05340 UDP-2,3-diacylglucosamine hydrolase; Provisional
Probab=37.25  E-value=27  Score=15.72  Aligned_cols=91  Identities=12%  Similarity=0.148  Sum_probs=46.8

Q ss_pred             CCEEECCCCCCCCCC-CHHHHHHHHHHHHCCC-CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             972665658974988-9999999999983887-56998778989999999986421013333223323345433332222
Q gi|254780602|r   31 IDVLCLTAGEPDFDM-PENVKYAVVRAMERGE-TKYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFNAL  108 (400)
Q Consensus        31 ~~ii~l~~G~p~~~~-p~~i~~a~~~al~~~~-~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l~~~~  108 (400)
                      -|++++|+|+-..++ ...|..++.+..+.|. .-|-+.- +..+   +.+++.+..|..+=+|..+++.++.-      
T Consensus        40 GDifD~W~g~~~~~~~~~~v~~~L~~l~~~G~~V~yi~GN-HDfl---lg~~f~~~~g~~~~~~~~~~~~~g~r------  109 (240)
T PRK05340         40 GDLFEAWIGDDDPSPFAAEIAAALKALSDSGVPCYFMHGN-RDFL---LGKRFAKAAGMTLLPDPTVIDLYGQK------  109 (240)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEECC-CCHH---HHHHHHHHHCCEECCCCEEEEECCEE------
T ss_conf             4577576067867879999999999998569869999168-7255---35689998299882675799889959------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             222332232222333323222222
Q gi|254780602|r  109 MATVNMGDEVLIPRPYWVSYPDMV  132 (400)
Q Consensus       109 ~~~~~~Gd~Vlv~~P~y~~y~~~~  132 (400)
                       .++-.||.+-..+..|..+....
T Consensus       110 -~lv~HGD~lc~~D~~Y~~~r~~~  132 (240)
T PRK05340        110 -VLLLHGDTLCTDDKAYQRFRRKV  132 (240)
T ss_pred             -EEEECCCCCCCCCHHHHHHHHHH
T ss_conf             -99987983677978999999996


No 412
>PRK13113 consensus
Probab=36.79  E-value=32  Score=15.30  Aligned_cols=82  Identities=10%  Similarity=0.174  Sum_probs=36.6

Q ss_pred             CCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCC
Q ss_conf             12201211354210000123333211122333332011101221100000122332221112333225741465443223
Q gi|254780602|r  164 KTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAM  243 (400)
Q Consensus       164 ~~k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~~  243 (400)
                      +...|.+++|+.      +.++++++++. +. .-++.++=   ...  .|.+-    ....+..+.+-.+.+.++   .
T Consensus       147 ~l~~I~lvaPtt------~~~Ri~~i~~~-a~-gFiY~Vs~---~Gv--TG~~~----~~~~~~~~~i~~ik~~t~---~  206 (263)
T PRK13113        147 GLNFIRLATPTT------DDRRLPKVLQN-TS-GFVYYVSI---TGI--TGAAA----AQAADVAPEVARIKAATD---L  206 (263)
T ss_pred             CCCEEEEECCCC------CHHHHHHHHHC-CC-CCEEEEEC---CCC--CCCCC----CCHHHHHHHHHHHHHCCC---C
T ss_conf             986799947999------99999999833-89-84899834---556--68775----543779999999985479---9


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf             44544422110122687531001
Q gi|254780602|r  244 TGLRIGYAAGALSLIKSMIVLQG  266 (400)
Q Consensus       244 ~G~RiG~~v~~~~li~~l~~~~~  266 (400)
                      | .=+||-+..++.++.+....+
T Consensus       207 P-v~vGFGI~~~e~~~~~~~~AD  228 (263)
T PRK13113        207 P-VIVGFGITTPEAAQAIAGVAD  228 (263)
T ss_pred             C-EEEECCCCCHHHHHHHHCCCC
T ss_conf             8-899837899899999973399


No 413
>PRK11761 cysM cysteine synthase B; Provisional
Probab=36.63  E-value=24  Score=16.11  Aligned_cols=111  Identities=17%  Similarity=0.184  Sum_probs=55.5

Q ss_pred             CCCCCCCCHHHHHHHHHHHHH-HCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CC-CCCCCCCCCCCC
Q ss_conf             699877898999999998642-1013333223-3233454333322222223322322223333-23-222222222222
Q gi|254780602|r   63 KYTAVAGISPLREAIVEKFRR-DNDLHYTSDQ-IIVGTGAKHVIFNALMATVNMGDEVLIPRPY-WV-SYPDMVALCGGI  138 (400)
Q Consensus        63 ~Y~~~~G~~~lR~aia~~~~~-~~g~~~~~e~-I~it~G~~~~l~~~~~~~~~~Gd~Vlv~~P~-y~-~y~~~~~~~g~~  138 (400)
                      .+..+.|....|-|..-.... ..| .+.|.. |+-.+++..|+.++..+-. .|=++++.-|. .+ .-....+.+|++
T Consensus        34 E~~nptGS~KdR~A~~~i~~a~~~G-~l~~g~~vveaSSGN~g~alA~~a~~-~G~~~~iv~p~~~s~~k~~~l~~~GAe  111 (296)
T PRK11761         34 EGNNPAGSVKDRPALSMIVQAEKRG-EIKPGDTLIEATSGNTGIALAMAAAI-KGYRMKLIMPENMSQERRAAMRAYGAE  111 (296)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHCC-CCCCCCEEEEECCCCHHHHHHHHHHH-CCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf             2579745829999999999999749-98999879993788679999999998-197479967865788999999974995


Q ss_pred             CCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEEC---CCCCCCC
Q ss_conf             222222222322210333100012212201211---3542100
Q gi|254780602|r  139 PVFVDTQQDDNFQVSPEKLEQAITPKTKWLFLN---SPSNPSG  178 (400)
Q Consensus       139 ~~~v~~~~~~~~~~d~~~l~~~i~~~~k~i~l~---nP~NPTG  178 (400)
                      ++.+|-+  .++.--. ++.+.+......++++   ||.||-.
T Consensus       112 Vi~~~~~--~~~~~ar-~~a~~l~~~~~~~~~~Q~~N~~N~~a  151 (296)
T PRK11761        112 LILVPKE--QGMEGAR-DLALQMQAEGKGKVLDQFNNPDNPYA  151 (296)
T ss_pred             EEEECCC--CCHHHHH-HHHHHHHHCCCCEECCCCCCHHHHHH
T ss_conf             5741777--4568999-99999987349784367788566777


No 414
>TIGR02102 pullulan_Gpos pullulanase, extracellular; InterPro: IPR011838    Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterised members of this family include a surface-located pullulanase from Streptococcus pneumoniae  and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity ..
Probab=36.45  E-value=17  Score=16.96  Aligned_cols=36  Identities=17%  Similarity=0.461  Sum_probs=16.0

Q ss_pred             EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCC
Q ss_conf             1211354210000123333211122333332011101221
Q gi|254780602|r  168 LFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIY  207 (400)
Q Consensus       168 i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y  207 (400)
                      +|=.+|.||.-.+   +|++.|++- ..+.++=+|.|=+|
T Consensus       561 MYS~~P~dP~~RI---~EfK~Li~e-IHkRgMGviLDVVY  596 (1164)
T TIGR02102       561 MYSEDPKDPELRI---AEFKNLINE-IHKRGMGVILDVVY  596 (1164)
T ss_pred             CCCCCCCCHHHHH---HHHHHHHHH-HCCCCCEEEEEEEE
T ss_conf             3467788878999---998877777-51589717998773


No 415
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=35.77  E-value=18  Score=16.79  Aligned_cols=112  Identities=17%  Similarity=0.173  Sum_probs=53.4

Q ss_pred             CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCC-CC-CCCCCCCCCCCCCCCC
Q ss_conf             8778989999999986421013333223323--345433332222222332232222333-32-3222222222222222
Q gi|254780602|r   66 AVAGISPLREAIVEKFRRDNDLHYTSDQIIV--GTGAKHVIFNALMATVNMGDEVLIPRP-YW-VSYPDMVALCGGIPVF  141 (400)
Q Consensus        66 ~~~G~~~lR~aia~~~~~~~g~~~~~e~I~i--t~G~~~~l~~~~~~~~~~Gd~Vlv~~P-~y-~~y~~~~~~~g~~~~~  141 (400)
                      .+.|.-.-|-++.-.......-.+.|...++  |+| +-||.+++.+-. .|=++++.-| +. .....+.+.+|++++.
T Consensus        36 NP~gSvKDR~A~~mI~~Ae~~G~l~pG~tIVE~TSG-NTGIaLA~vaa~-~Gy~~~ivmP~~~S~er~~~l~a~GAevi~  113 (300)
T COG0031          36 NPGGSVKDRIALYMIEDAEKRGLLKPGGTIVEATSG-NTGIALAMVAAA-KGYRLIIVMPETMSQERRKLLRALGAEVIL  113 (300)
T ss_pred             CCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEECCC-HHHHHHHHHHHH-CCCCEEEEECCCCCHHHHHHHHHCCCEEEE
T ss_conf             987762577999999999984987999989970897-279999999998-199289995898999999999982998998


Q ss_pred             CCCCCCCCCCCHHHHHHCCCCCCCC-CEEE---CCCCCCCCCC
Q ss_conf             2222223222103331000122122-0121---1354210000
Q gi|254780602|r  142 VDTQQDDNFQVSPEKLEQAITPKTK-WLFL---NSPSNPSGVV  180 (400)
Q Consensus       142 v~~~~~~~~~~d~~~l~~~i~~~~k-~i~l---~nP~NPTG~v  180 (400)
                      +|-.+ +.+.=-.+.+++...+.+. ++++   .||.||-..-
T Consensus       114 t~~~~-g~~~~a~~~a~el~~~~p~~~~~~~Qf~NpaN~~aH~  155 (300)
T COG0031         114 TPGAP-GNMKGAIERAKELAAEIPGYAVWLNQFENPANPEAHY  155 (300)
T ss_pred             CCCCC-CCHHHHHHHHHHHHHHCCCCEECHHHCCCCCCHHHHH
T ss_conf             37987-7459999999999974988367553438964789897


No 416
>PRK05872 short chain dehydrogenase; Provisional
Probab=34.44  E-value=1.1  Score=24.34  Aligned_cols=140  Identities=15%  Similarity=0.134  Sum_probs=61.3

Q ss_pred             CCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCC---CCC-C
Q ss_conf             2332334543333222-2222332232222333323222222222222222222222322210333100012---212-2
Q gi|254780602|r   92 DQIIVGTGAKHVIFNA-LMATVNMGDEVLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQAIT---PKT-K  166 (400)
Q Consensus        92 e~I~it~G~~~~l~~~-~~~~~~~Gd~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~---~~~-k  166 (400)
                      ..+++-+|++.||-.. ...+.+.|.+|++.+-.-..-.......|.+...+.+|-     -|.+++++.+.   ++- +
T Consensus         9 gKvalITGassGIG~aiA~~la~~Ga~Vvl~dr~~~~l~~~~~~lg~~~~~~~~DV-----td~~~v~~~v~~i~~~~G~   83 (296)
T PRK05872          9 GKVVFVTGAARGVGAELARRLHARGAKVALVDLEEAELAALAAELGDRVLTVVADV-----TDLAAMQAAAEEAVERFGG   83 (296)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHCCCEEEEEEEC-----CCHHHHHHHHHHHHHHHCC
T ss_conf             98799927105899999999998799899998999999999998388738999827-----9999999999999997199


Q ss_pred             C-EEECCCC-CCCCCC--CCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCC
Q ss_conf             0-1211354-210000--12333321112233333201110122110000012233222111233322574146544322
Q gi|254780602|r  167 W-LFLNSPS-NPSGVV--YSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYA  242 (400)
Q Consensus       167 ~-i~l~nP~-NPTG~v--~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~  242 (400)
                      . +++||-. ++.|.+  ++.++++++.++=.  .+.+.+.-.+          .+.+..  .  ..++|.++|.+-..+
T Consensus        84 iDiLVnNAGi~~~~~~~~~~~e~~~~v~dVNl--~G~~~~~ra~----------lp~m~~--~--~G~IVnisS~ag~~~  147 (296)
T PRK05872         84 IDVVVANAGIASYGSVLQVDPAAFRRVIDVNL--LGVFHTVRAT----------LPAVIE--R--RGYVLQVSSLAAFAA  147 (296)
T ss_pred             CCEEEECCCCCCCCCHHHCCHHHHHHHHHHHH--HHHHHHHHHH----------HHHHHH--C--CCEEEEEECHHHHCC
T ss_conf             87876556257997642199899725842445--9999999999----------999997--7--998999960543245


Q ss_pred             CCCCCCCCCCC
Q ss_conf             34454442211
Q gi|254780602|r  243 MTGLRIGYAAG  253 (400)
Q Consensus       243 ~~G~RiG~~v~  253 (400)
                      .||. ..|..+
T Consensus       148 ~p~~-~aY~AS  157 (296)
T PRK05872        148 APGM-APYCAS  157 (296)
T ss_pred             CCCC-CHHHHH
T ss_conf             8998-079999


No 417
>TIGR00289 TIGR00289 conserved hypothetical protein TIGR00289; InterPro: IPR005237   This family of conserved hypothetical proteins has no known function. Homologous proteins related to MJ0570 of Methanococcus jannaschii include both the apparent orthologs in the family, the much longer protein YLR143W from Saccharomyces cerevisiae (Baker's yeast), and second homologous proteins from Archaeoglobus fulgidus and Pyrococcus horikoshii that appear to represent a second orthologous group..
Probab=33.97  E-value=17  Score=16.96  Aligned_cols=97  Identities=14%  Similarity=0.200  Sum_probs=40.2

Q ss_pred             HHHHHHCCCC---C-CCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             0333100012---2-12201211354210000123333211122333332011101221100000122332221112333
Q gi|254780602|r  153 SPEKLEQAIT---P-KTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLY  228 (400)
Q Consensus       153 d~~~l~~~i~---~-~~k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~  228 (400)
                      ..|+|...+.   + .+.+|+       ||.+.|.=+..++=++| |+-++-.|     +.|...++ .--+.......+
T Consensus        74 EVedLag~l~~lderGvea~~-------~Ga~~S~YQK~Rid~vC-relGlks~-----APLW~~dP-le~~~~~V~e~F  139 (227)
T TIGR00289        74 EVEDLAGQLEELDERGVEAVV-------IGAIESEYQKSRIDKVC-RELGLKSI-----APLWHKDP-LEYLLEEVAEKF  139 (227)
T ss_pred             HHHHHHHHHHHHHHCCCCEEE-------ECCEECCHHHHHHHHHH-HHHCCHHC-----CCCCCCCH-HHHHHHHHHCCC
T ss_conf             176662155445530545478-------85341011233577887-77141002-----76013481-799999862336


Q ss_pred             CEE---EEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf             225---741465443223445444221101226875310012223
Q gi|254780602|r  229 ERT---LVVNGVSKAYAMTGLRIGYAAGALSLIKSMIVLQGQQTS  270 (400)
Q Consensus       229 ~~~---i~~~S~SK~~~~~G~RiG~~v~~~~li~~l~~~~~~~~~  270 (400)
                      +..   +.-.++.|.|-  |-||     +++.|+.+.++..-...
T Consensus       140 ~v~iv~V~A~GLdeswL--Grri-----dke~Id~L~~l~EkYgi  177 (227)
T TIGR00289       140 EVIIVSVSAEGLDESWL--GRRI-----DKECIDDLKDLSEKYGI  177 (227)
T ss_pred             EEEEEEEEEECCCCCCC--CCEE-----CHHHHHHHHHHHHHHCC
T ss_conf             08999998411782236--6200-----66678988632233067


No 418
>PRK10481 hypothetical protein; Provisional
Probab=32.30  E-value=38  Score=14.85  Aligned_cols=28  Identities=11%  Similarity=0.145  Sum_probs=16.9

Q ss_pred             EECCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf             41465443223445444221101226875
Q gi|254780602|r  233 VVNGVSKAYAMTGLRIGYAAGALSLIKSM  261 (400)
Q Consensus       233 ~~~S~SK~~~~~G~RiG~~v~~~~li~~l  261 (400)
                      ++..+-+++. +|.|+|.++--++.++..
T Consensus       117 il~~lV~ai~-~~~~lGVvvP~~eQ~~~~  144 (224)
T PRK10481        117 ILPPLVAAIV-DGHQLGVIVPVEEQLALQ  144 (224)
T ss_pred             HHHHHHHHHC-CCCEEEEEECCHHHHHHH
T ss_conf             6689999856-898699996278999999


No 419
>cd06569 GH20_Sm-chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=32.20  E-value=10  Score=18.27  Aligned_cols=27  Identities=7%  Similarity=0.113  Sum_probs=15.9

Q ss_pred             CHHHHHHHHHHHHHHCCCCEEECCCCC
Q ss_conf             589999999999998699726656589
Q gi|254780602|r   14 SATLVAAQRVRDLRSKGIDVLCLTAGE   40 (400)
Q Consensus        14 s~~~~~~~~~~~~~~~g~~ii~l~~G~   40 (400)
                      .+.-.|.+.+..|......++++.+-+
T Consensus        19 ~~v~~Ik~~iD~Ma~~KlN~lHwHLtD   45 (445)
T cd06569          19 HSKETVLKLLDQMAAYKLNKLHLHLTD   45 (445)
T ss_pred             CCHHHHHHHHHHHHHHCCCEEEEEEEC
T ss_conf             689999999999998388646872763


No 420
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=31.46  E-value=39  Score=14.77  Aligned_cols=70  Identities=21%  Similarity=0.302  Sum_probs=38.3

Q ss_pred             HHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCC-CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf             9999999869972665658974988999999999998388756998-778989999999986421013333223323345
Q gi|254780602|r   21 QRVRDLRSKGIDVLCLTAGEPDFDMPENVKYAVVRAMERGETKYTA-VAGISPLREAIVEKFRRDNDLHYTSDQIIVGTG   99 (400)
Q Consensus        21 ~~~~~~~~~g~~ii~l~~G~p~~~~p~~i~~a~~~al~~~~~~Y~~-~~G~~~lR~aia~~~~~~~g~~~~~e~I~it~G   99 (400)
                      --++.++.+|.+|++++.    +.+|+.+.+++.+. +-..-+-+. ..++.++-+.+.+.+++. |.    ++|.+..|
T Consensus        18 iva~~l~d~GfeVi~lG~----~~s~eeiv~~A~~e-~ad~IglSsL~g~h~~~~~~l~~~L~e~-G~----~di~v~vG   87 (122)
T cd02071          18 VIARALRDAGFEVIYTGL----RQTPEEIVEAAIQE-DVDVIGLSSLSGGHMTLFPEVIELLREL-GA----GDILVVGG   87 (122)
T ss_pred             HHHHHHHHCCCEEEECCC----CCCHHHHHHHHHHC-CCCEEEEECCCCCHHHHHHHHHHHHHHC-CC----CCCEEEEE
T ss_conf             999999978976996799----88999999999973-9989999646554478999999999976-99----98469994


Q ss_pred             C
Q ss_conf             4
Q gi|254780602|r  100 A  100 (400)
Q Consensus       100 ~  100 (400)
                      +
T Consensus        88 G   88 (122)
T cd02071          88 G   88 (122)
T ss_pred             C
T ss_conf             5


No 421
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster.  Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=31.37  E-value=39  Score=14.76  Aligned_cols=43  Identities=23%  Similarity=0.232  Sum_probs=25.8

Q ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             9877898999999998642101333322332334543333222222233223222233
Q gi|254780602|r   65 TAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFNALMATVNMGDEVLIPR  122 (400)
Q Consensus        65 ~~~~G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l~~~~~~~~~~Gd~Vlv~~  122 (400)
                      .++.|+.+||++|++++    |.+...+      |     ...+.-+=+.||.|++.+
T Consensus        18 ~~s~~~~~L~~~V~~rL----g~d~~~~------~-----~~~L~Y~DDEgD~VliTs   60 (86)
T cd06409          18 RPSESLEELRTLISQRL----GDDDFET------H-----LYALSYVDDEGDIVLITS   60 (86)
T ss_pred             CCCCCHHHHHHHHHHHH----CCCCCCC------C-----CCEEEEECCCCCEEEEEE
T ss_conf             57689999999999984----8850016------7-----612788748999899940


No 422
>KOG0604 consensus
Probab=30.43  E-value=29  Score=15.61  Aligned_cols=17  Identities=12%  Similarity=0.102  Sum_probs=6.7

Q ss_pred             CCCCCCCCCCCCCCCCC
Q ss_conf             22233332322222222
Q gi|254780602|r  118 VLIPRPYWVSYPDMVAL  134 (400)
Q Consensus       118 Vlv~~P~y~~y~~~~~~  134 (400)
                      ..+.+|+|..|....+.
T Consensus       218 ~~L~TPc~TPyYvaPev  234 (400)
T KOG0604         218 GDLMTPCFTPYYVAPEV  234 (400)
T ss_pred             CCCCCCCCCCCCCCHHH
T ss_conf             64247766664158777


No 423
>cd01563 Thr-synth_1 Threonine synthase is a pyridoxal phosphate (PLP) dependent enzyme that catalyses the last reaction in the synthesis of  threonine from aspartate. It proceeds by converting O-phospho-L-homoserine (OPH) into threonine and inorganic phosphate. In plants, OPH is an intermediate between the methionine and threonine/isoleucine pathways. Thus threonine synthase competes for OPH with cystathionine-gamma-synthase, the first enzyme in the methionine pathway. These enzymes are in general dimers. Members of this CD, Thr-synth_1, are widely distributed in bacteria, archaea and higher plants.
Probab=29.87  E-value=29  Score=15.54  Aligned_cols=135  Identities=14%  Similarity=0.146  Sum_probs=67.6

Q ss_pred             CCCCEEECCCCCCCCCCCHHHHHHHHHHHHCC-C---CCCCCCCCCHHHHHHHHHHHH-HHCCCCCCCCCCCCCCCCCCC
Q ss_conf             69972665658974988999999999998388-7---569987789899999999864-210133332233233454333
Q gi|254780602|r   29 KGIDVLCLTAGEPDFDMPENVKYAVVRAMERG-E---TKYTAVAGISPLREAIVEKFR-RDNDLHYTSDQIIVGTGAKHV  103 (400)
Q Consensus        29 ~g~~ii~l~~G~p~~~~p~~i~~a~~~al~~~-~---~~Y~~~~G~~~lR~aia~~~~-~~~g~~~~~e~I~it~G~~~~  103 (400)
                      .+++++.++.|+    ||-.-.+.+.+.+... .   ..+..+.|....|-+...-.. ...|    .+.|+..+++..|
T Consensus        11 ~~~~~~~~g~Gn----TPLi~l~~Ls~~lg~~~i~~K~E~~nptGSfK~RgA~~~i~~a~~~g----~~~vv~~SsGN~G   82 (324)
T cd01563          11 TEDDIVSLGEGN----TPLVRAPRLGERLGGKNLYVKDEGLNPTGSFKDRGMTVAVSKAKELG----VKAVACASTGNTS   82 (324)
T ss_pred             CCCCCCCCCCCC----CCEEEHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHCC----CCEEEEECCHHHH
T ss_conf             999866689898----80546666788709987999863689777869999999999999759----9979997833999


Q ss_pred             CCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEECCCCCCC
Q ss_conf             322222223-32232222333323222222222222222222222322210333100012212201211354210
Q gi|254780602|r  104 IFNALMATV-NMGDEVLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNPS  177 (400)
Q Consensus       104 l~~~~~~~~-~~Gd~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~k~i~l~nP~NPT  177 (400)
                      +.++..+-. .-.-.|++|.-+-+.-....+.+|++++.++.+.+     +..+..+.+.+.. ..++.++.||-
T Consensus        83 ~alA~~a~~~G~k~~Iv~p~~~~~~k~~~i~~~GAeVv~v~~~~~-----~~~~~a~~~~~~~-~~~~~~~~n~~  151 (324)
T cd01563          83 ASLAAYAARAGIKCVVFLPAGKALGKLAQALAYGATVLAVEGNFD-----DALRLVRELAEEN-WIYLSNSLNPY  151 (324)
T ss_pred             HHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHCCCEEEECCCCHH-----HHHHHHHHHHHHC-CCEECCCCCCH
T ss_conf             999999998599657655764389999999955998997589999-----9999999977745-83110456825


No 424
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=29.64  E-value=42  Score=14.58  Aligned_cols=21  Identities=19%  Similarity=0.064  Sum_probs=8.5

Q ss_pred             HHHHHHHHHHCCCCEEECCCC
Q ss_conf             999999999869972665658
Q gi|254780602|r   19 AAQRVRDLRSKGIDVLCLTAG   39 (400)
Q Consensus        19 ~~~~~~~~~~~g~~ii~l~~G   39 (400)
                      +...+.++...|---+-+|-|
T Consensus        30 mlPi~e~lD~~G~~slE~WGG   50 (472)
T COG5016          30 MLPIAEALDKVGYWSLEVWGG   50 (472)
T ss_pred             HHHHHHHHHHCCEEEEEECCC
T ss_conf             579999987518057874177


No 425
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General    function prediction only]
Probab=29.41  E-value=17  Score=17.00  Aligned_cols=11  Identities=36%  Similarity=0.688  Sum_probs=5.2

Q ss_pred             CCCCCCCCCHH
Q ss_conf             45444221101
Q gi|254780602|r  245 GLRIGYAAGAL  255 (400)
Q Consensus       245 G~RiG~~v~~~  255 (400)
                      |--+||+-+.+
T Consensus       289 G~dIGfLPG~e  299 (436)
T COG1875         289 GEDIGFLPGTE  299 (436)
T ss_pred             CCCCCCCCCCH
T ss_conf             53137688843


No 426
>KOG0736 consensus
Probab=29.35  E-value=43  Score=14.55  Aligned_cols=20  Identities=20%  Similarity=0.439  Sum_probs=10.2

Q ss_pred             CCCCCCCCCCCEEECCCCCC
Q ss_conf             11223333320111012211
Q gi|254780602|r  189 LADVLVRNPHVHIISDDIYE  208 (400)
Q Consensus       189 i~~~~a~~~~i~ii~De~Y~  208 (400)
                      +++..|++-++.+++=++|+
T Consensus       447 ~V~~vas~lg~h~~evdc~e  466 (953)
T KOG0736         447 VVRAVASELGLHLLEVDCYE  466 (953)
T ss_pred             HHHHHHHHHCCCEEECCHHH
T ss_conf             99999998387257013898


No 427
>PRK10333 putative ligase; Provisional
Probab=29.25  E-value=32  Score=15.32  Aligned_cols=13  Identities=31%  Similarity=0.703  Sum_probs=8.2

Q ss_pred             CCCCCCCCCCCCC
Q ss_conf             2234454442211
Q gi|254780602|r  241 YAMTGLRIGYAAG  253 (400)
Q Consensus       241 ~~~~G~RiG~~v~  253 (400)
                      |..-|.|+||--|
T Consensus       136 FD~~G~RLGyGgG  148 (198)
T PRK10333        136 FDEYGQRLGMGGG  148 (198)
T ss_pred             ECCCCCEEECCCC
T ss_conf             6588816366874


No 428
>cd01561 CBS_like CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase. CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis.  This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine.
Probab=29.08  E-value=30  Score=15.50  Aligned_cols=80  Identities=15%  Similarity=0.121  Sum_probs=38.4

Q ss_pred             CCCCHHHHHHHHHHHH-HHCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             7789899999999864-21013333223323-34543333222222233223--22223333232222222222222222
Q gi|254780602|r   67 VAGISPLREAIVEKFR-RDNDLHYTSDQIIV-GTGAKHVIFNALMATVNMGD--EVLIPRPYWVSYPDMVALCGGIPVFV  142 (400)
Q Consensus        67 ~~G~~~lR~aia~~~~-~~~g~~~~~e~I~i-t~G~~~~l~~~~~~~~~~Gd--~Vlv~~P~y~~y~~~~~~~g~~~~~v  142 (400)
                      +.|....|-+...-.. ...| ...+..+++ .+.+..|..++..+-. -|=  .|++|.=.=+.-...++.+|++++.+
T Consensus        28 ptGSfK~Rga~~~i~~a~~~g-~~~~~~~vv~aSsGN~g~alA~~a~~-~Gi~~~I~~p~~~~~~k~~~i~~~GA~Vv~v  105 (291)
T cd01561          28 PGGSVKDRIALYMIEDAEKRG-LLKPGTTIIEPTSGNTGIGLAMVAAA-KGYRFIIVMPETMSEEKRKLLRALGAEVILT  105 (291)
T ss_pred             CCCCCHHHHHHHHHHHHHHCC-CCCCCCEEEEECCCCHHHHHHHHHHH-CCCCEEEECCCCCHHHHHHHHHHCCCEEEEE
T ss_conf             777869999999999999819-98899789980898479999999998-0998389647630699999999669889997


Q ss_pred             CCCCCC
Q ss_conf             222223
Q gi|254780602|r  143 DTQQDD  148 (400)
Q Consensus       143 ~~~~~~  148 (400)
                      +...+.
T Consensus       106 ~~~~~~  111 (291)
T cd01561         106 PEAEAD  111 (291)
T ss_pred             CCCCCC
T ss_conf             798887


No 429
>cd06306 PBP1_TorT-like TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. The Tor respiratory system is consists of three proteins (TorC, TorA, and TorD) and is induced in the presence of TMAO. The TMAO control is tightly regulated by three proteins: TorS, TorT, and TorR. Thus, the disruption of any of these proteins can abolish the Tor respiratory induction. TorT shares homology with the sugar-binding domain of the type I periplasmic binding proteins. The members of TorT-like family bind TMAO or related compounds and are predicted to be involved in signal transduction and/or substrate transport.
Probab=28.95  E-value=11  Score=18.04  Aligned_cols=73  Identities=16%  Similarity=0.272  Sum_probs=39.7

Q ss_pred             CCCCCCCC----CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             33332322----22222222222222222223222103331000122122012113542100001233332111223333
Q gi|254780602|r  121 PRPYWVSY----PDMVALCGGIPVFVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRN  196 (400)
Q Consensus       121 ~~P~y~~y----~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~  196 (400)
                      .+|+|...    ...++..|.++..+....+++-.--.+.++.+++.++.+|++ +|.+|.+..       .+.+. +. 
T Consensus        10 ~npfw~~~~~Ga~~aA~e~G~~v~~~~~~~~~d~~~Qi~~ie~~i~~gvDaIii-~p~d~~al~-------~~~~a-~~-   79 (268)
T cd06306          10 KDAYWLSVNYGMVEEAKRLGVSLKLLEAGGYPNLAKQIAQLEDCAAWGADAILL-GAVSPDGLN-------EILQQ-VA-   79 (268)
T ss_pred             CCHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEE-CCCCHHHHH-------HHHHH-HH-
T ss_conf             987999999999999999699799995899999999999999999839999998-679867778-------99999-98-


Q ss_pred             CCCEEEC
Q ss_conf             3201110
Q gi|254780602|r  197 PHVHIIS  203 (400)
Q Consensus       197 ~~i~ii~  203 (400)
                      .++.||.
T Consensus        80 agIPVV~   86 (268)
T cd06306          80 ASIPVIA   86 (268)
T ss_pred             CCCEEEE
T ss_conf             6982999


No 430
>cd06568 GH20_SpHex_like A subgroup of  the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex).  SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=28.79  E-value=13  Score=17.62  Aligned_cols=25  Identities=16%  Similarity=0.114  Sum_probs=11.9

Q ss_pred             HHHHHHHHHHHHHCCCCEEECCCCC
Q ss_conf             9999999999998699726656589
Q gi|254780602|r   16 TLVAAQRVRDLRSKGIDVLCLTAGE   40 (400)
Q Consensus        16 ~~~~~~~~~~~~~~g~~ii~l~~G~   40 (400)
                      .-.|.+.++.|......++++.+-+
T Consensus        17 ~~~ik~~id~ma~~KlN~lH~HltD   41 (329)
T cd06568          17 VAEVKRYIDLLALYKLNVLHLHLTD   41 (329)
T ss_pred             HHHHHHHHHHHHHHCCCEEEEEEEC
T ss_conf             9999999999998388556888862


No 431
>pfam04704 Zfx_Zfy_act Zfx / Zfy transcription activation region. Zfx and Zfy are transcription factors implicated in mammalian sex determination. This region is found N terminal to multiple copies of a C2H2 Zinc finger (pfam00096). This region has been shown to activate transcription when fused to a GAL4 DNA binding domain.
Probab=28.73  E-value=27  Score=15.72  Aligned_cols=54  Identities=15%  Similarity=0.218  Sum_probs=33.1

Q ss_pred             CCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             20111012211000001223322211123332257414654432234454442211012268753
Q gi|254780602|r  198 HVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTGLRIGYAAGALSLIKSMI  262 (400)
Q Consensus       198 ~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~v~~~~li~~l~  262 (400)
                      ++-=|.||+|.+.+-++....+       ..++.+--.+++|+|. |   +.|.++-......+.
T Consensus       239 ~~aeiaDevymeVIVGeEda~~-------~he~q~ed~~~nktf~-P---vaWaAAYGnn~d~~E  292 (330)
T pfam04704       239 NCAEIADEVYMEVIVGEEDAAP-------EHEQQMEDSEVNKTFV-P---VAWAAAYGNNSDGIE  292 (330)
T ss_pred             CCHHCCCCEEEEEEECCCCCCC-------CCCCCCCCCCCCCCCC-H---HHHHHHHCCCCCHHH
T ss_conf             5012055301799953656776-------4333110112110232-3---335766378741211


No 432
>cd01539 PBP1_GGBP Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. GGBP is a member of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic GGBP is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=28.71  E-value=9.5  Score=18.53  Aligned_cols=40  Identities=13%  Similarity=0.327  Sum_probs=19.1

Q ss_pred             HHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf             3331000122122012113542100001233332111223333320111
Q gi|254780602|r  154 PEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHII  202 (400)
Q Consensus       154 ~~~l~~~i~~~~k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii  202 (400)
                      .+.++..|+.++.+|++ +|.++++..       ..++-+ +..+|.||
T Consensus        47 ~~~Ie~~I~qgvD~Iii-~p~d~~~~~-------~~i~~A-~~agIPVI   86 (303)
T cd01539          47 NEQIDTALAKGVDLLAV-NLVDPTAAQ-------TVINKA-KQKNIPVI   86 (303)
T ss_pred             HHHHHHHHHCCCCEEEE-ECCCHHHHH-------HHHHHH-HHCCCEEE
T ss_conf             99999999759999999-468733489-------999999-96698499


No 433
>PRK05717 oxidoreductase; Validated
Probab=28.51  E-value=5.1  Score=20.18  Aligned_cols=141  Identities=11%  Similarity=0.063  Sum_probs=62.8

Q ss_pred             CCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCC------CC
Q ss_conf             33233454333322-222223322322223333232222222222222222222223222103331000122------12
Q gi|254780602|r   93 QIIVGTGAKHVIFN-ALMATVNMGDEVLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQAITP------KT  165 (400)
Q Consensus        93 ~I~it~G~~~~l~~-~~~~~~~~Gd~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~------~~  165 (400)
                      .+++-+|++.+|-. +...|.+.|-.|++.+-.=.......+..|.+...+.++-.     |.+++++.+..      +.
T Consensus        11 KvalITG~s~GIG~aia~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~~~~~~Dvt-----~~~~v~~~i~~~~~~~G~i   85 (255)
T PRK05717         11 RVALVTGAARGIGLGIAAWLIAEGWQVVLADLDRERGAKVAKALGENAWFIAMDVA-----DEAQVAAGVAEVLGQFGRL   85 (255)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHCCCEEEEEEECC-----CHHHHHHHHHHHHHHHCCC
T ss_conf             88999587888999999999987998999969889999999984897589993079-----9999999999999982999


Q ss_pred             CCEEECC-----CCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCC
Q ss_conf             2012113-----54210000123333211122333332011101221100000122332221112333225741465443
Q gi|254780602|r  166 KWLFLNS-----PSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKA  240 (400)
Q Consensus       166 k~i~l~n-----P~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~  240 (400)
                      .. +++|     |++++-.-++.++++++.++-..  +.+.+.-.+           .+...   .-..+.|.+.|.+=.
T Consensus        86 d~-lvnNAg~~~~~~~~l~~~~~~~w~~~~~vNl~--g~f~~~k~~-----------~~~m~---~~~G~IInisS~~~~  148 (255)
T PRK05717         86 DA-LVCNAAIANPHNTTLESLSLAQWNRVLAVNLG--GPMLLAKHC-----------APYLR---AHNGAIVNLASTRAR  148 (255)
T ss_pred             CE-EEECCCCCCCCCCCHHHCCHHHHHHHHHHHHH--HHHHHHHHC-----------HHHHH---HCCCCEEEEEECCCC
T ss_conf             89-99877305789998355999999999998604--265776643-----------19887---479986999760145


Q ss_pred             CCCCCCCCCCCCCHHH
Q ss_conf             2234454442211012
Q gi|254780602|r  241 YAMTGLRIGYAAGALS  256 (400)
Q Consensus       241 ~~~~G~RiG~~v~~~~  256 (400)
                      .+.|| +..|.++-..
T Consensus       149 ~~~~~-~~~Y~asKaa  163 (255)
T PRK05717        149 QSEPD-TEAYAASKGG  163 (255)
T ss_pred             CCCCC-CHHHHHHHHH
T ss_conf             47898-3767999999


No 434
>cd01740 GATase1_FGAR_AT Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase. Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase (FGAR-AT). FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, Pi, and glutamate in the fourth step of the purine biosynthetic pathway. FGAR-AT is a glutamine amidotransferase. Glutamine amidotransferase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. FGAR-AT belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site
Probab=28.41  E-value=37  Score=14.91  Aligned_cols=60  Identities=17%  Similarity=0.203  Sum_probs=30.7

Q ss_pred             CCCCCCCC-CCCCCCCCHHHHHHCCCCCCCCC--------EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf             22222222-22232221033310001221220--------12113542100001233332111223333320111
Q gi|254780602|r  137 GIPVFVDT-QQDDNFQVSPEKLEQAITPKTKW--------LFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHII  202 (400)
Q Consensus       137 ~~~~~v~~-~~~~~~~~d~~~l~~~i~~~~k~--------i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii  202 (400)
                      ..++++|. .-|++|..+-+.+.+....+--+        .-...|.||.|+..+      |+-+|.+...++-+
T Consensus       140 g~~l~ipvaHgEGr~~~~~~~l~~l~~~~~i~~~~~~~~~~~~~yP~NPNGS~~~------IAGI~s~~Grvlgm  208 (238)
T cd01740         140 GEVLRIPVAHGEGRFYADDETLAELEENGQIAQYVDDDGNVTERYPANPNGSLDG------IAGICNEDGRVLGM  208 (238)
T ss_pred             CCEEEEEEECCCEEEECCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCHHC------EEEEECCCCCEEEE
T ss_conf             9888888753723597182878999867956999957998022688899888202------12788799999997


No 435
>TIGR01368 CPSaseIIsmall carbamoyl-phosphate synthase, small subunit; InterPro: IPR006274   Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates , . CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate . The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC).   Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain . CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites . The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain.   Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein . The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP . There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia . CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains .    This entry represents the small subunit of the glutamine-dependent form (6.3.5.5 from EC) of carbamoyl phosphate synthase, CPSase II. The small subunit catalyses the hydrolysis of glutamine to ammonia, which in turn used by the large chain to synthesize carbamoyl phosphate. The C-terminal domain of the small subunit of CPSase has glutamine amidotransferase activity. Note that the sequence from the mammalian urea cycle form has lost the active site Cys, resulting in an ammonia-dependent form, CPSase I (6.3.4.16 from EC). CPSases of pyrimidine biosynthesis, arginine biosynthesis, and the urea cycle may be encoded by one or by several genes, depending on the species. ; GO: 0004086 carbamoyl-phosphate synthase activity, 0006807 nitrogen compound metabolic process.
Probab=28.05  E-value=16  Score=17.16  Aligned_cols=24  Identities=21%  Similarity=0.199  Sum_probs=15.8

Q ss_pred             EEEEEE-CCH-HHHHHHHHHHHHHHH
Q ss_conf             899962-999-999999999999998
Q gi|254780602|r  374 IRISYA-VSD-AILEEACVRIKRFCH  397 (400)
Q Consensus       374 iRis~~-~~~-e~l~~al~rl~~~l~  397 (400)
                      |=||=+ -++ +.++.+++.++++++
T Consensus       241 iflSNGPGDPH~~~~~~i~~~~~l~~  266 (383)
T TIGR01368       241 IFLSNGPGDPHAAVEPAIETVRELLE  266 (383)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHHH
T ss_conf             99908798805678999999999984


No 436
>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate  to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehy
Probab=27.92  E-value=39  Score=14.81  Aligned_cols=77  Identities=19%  Similarity=0.115  Sum_probs=39.7

Q ss_pred             CCCCHHHHHHHHHHHH-HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             7789899999999864-2101333322332334543333222222233223--222233332322222222222222222
Q gi|254780602|r   67 VAGISPLREAIVEKFR-RDNDLHYTSDQIIVGTGAKHVIFNALMATVNMGD--EVLIPRPYWVSYPDMVALCGGIPVFVD  143 (400)
Q Consensus        67 ~~G~~~lR~aia~~~~-~~~g~~~~~e~I~it~G~~~~l~~~~~~~~~~Gd--~Vlv~~P~y~~y~~~~~~~g~~~~~v~  143 (400)
                      +.|....|-+...-.. ...+.. ....|+..+++..|+.++..+-. .|=  .|++|.-.-+.-....+.+|++++.++
T Consensus        26 ptgSfK~Rga~~~v~~a~~~~~~-~~~~vv~aSsGN~g~a~A~~a~~-~G~~~~i~~p~~~~~~k~~~~~~~GA~vi~~~  103 (244)
T cd00640          26 PTGSFKDRGALNLILLAEEEGKL-PKGVIIESTGGNTGIALAAAAAR-LGLKCTIVMPEGASPEKVAQMRALGAEVVLVP  103 (244)
T ss_pred             CCCCHHHHHHHHHHHHHHHHCCC-CCCEEEEECCCHHHHHHHHHHHH-CCCCCEEEECCHHHHHHHHHHHHCCCEEEEEC
T ss_conf             88880999999999999984886-69889992785789999998874-69663377675156789998870797799989


Q ss_pred             CC
Q ss_conf             22
Q gi|254780602|r  144 TQ  145 (400)
Q Consensus       144 ~~  145 (400)
                      .+
T Consensus       104 ~~  105 (244)
T cd00640         104 GD  105 (244)
T ss_pred             CC
T ss_conf             95


No 437
>PRK09701 D-allose transporter subunit; Provisional
Probab=27.57  E-value=12  Score=17.95  Aligned_cols=24  Identities=13%  Similarity=0.122  Sum_probs=12.4

Q ss_pred             HHHHHCCCCCCCCCEEECCCCCCCC
Q ss_conf             3331000122122012113542100
Q gi|254780602|r  154 PEKLEQAITPKTKWLFLNSPSNPSG  178 (400)
Q Consensus       154 ~~~l~~~i~~~~k~i~l~nP~NPTG  178 (400)
                      .+.++..|+.++.+|++ +|.+|++
T Consensus        72 i~~Ie~~I~~gvdaIii-~p~d~~a   95 (311)
T PRK09701         72 LQLFEDLSNKNYKGIAF-APLSSVN   95 (311)
T ss_pred             HHHHHHHHHCCCCEEEE-ECCCHHH
T ss_conf             99999999759999999-1898778


No 438
>KOG2192 consensus
Probab=27.43  E-value=42  Score=14.56  Aligned_cols=23  Identities=13%  Similarity=0.186  Sum_probs=10.4

Q ss_pred             HHHHHCCCCCCCCCEEECCCCCC
Q ss_conf             33310001221220121135421
Q gi|254780602|r  154 PEKLEQAITPKTKWLFLNSPSNP  176 (400)
Q Consensus       154 ~~~l~~~i~~~~k~i~l~nP~NP  176 (400)
                      +.+|.++.+.+-|.+-=|-||--
T Consensus       145 ikelrekcsarlkift~c~p~st  167 (390)
T KOG2192         145 IKELREKCSARLKIFTECCPHST  167 (390)
T ss_pred             HHHHHHHHHHHHHHHCCCCCCCC
T ss_conf             78888764255543114489976


No 439
>cd04751 Commd3 COMM_Domain containing protein 3. The COMM Domain is found at the C-terminus of a variety of proteins; presumably all COMM_Domain containing proteins are located in the nucleus and the COMM domain plays a role in protein-protein interactions. Several family members have been shown to bind and inhibit NF-kappaB.
Probab=27.35  E-value=46  Score=14.33  Aligned_cols=26  Identities=12%  Similarity=0.303  Sum_probs=21.4

Q ss_pred             EEEEECCHHHHHHHHHHHHHHHHHCC
Q ss_conf             99962999999999999999998609
Q gi|254780602|r  375 RISYAVSDAILEEACVRIKRFCHSLQ  400 (400)
Q Consensus       375 Ris~~~~~e~l~~al~rl~~~l~~l~  400 (400)
                      ++.|+++.|+|..-+.+||++.++++
T Consensus        66 ~i~F~Cs~EqLQdLv~kLKdA~k~~E   91 (95)
T cd04751          66 DINFTCTLEQLQDLVNKLKDAAKNIE   91 (95)
T ss_pred             CEEEEECHHHHHHHHHHHHHHHHHHH
T ss_conf             54688669999999999999999998


No 440
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase; InterPro: IPR011895   The oxidative decarboxylation of pyruvate to acetyl-CoA, a central step in energy metabolism, can occur by two different mechanisms . In mitochondria and aerobic bacteria this reaction is catalysed by the multienzyme complex pyruvate dehydrogenase using NAD as electron acceptor. In anaerobic organisms, however, this reaction is reversibly catalysed by a single enzyme using either ferrodoxin or flavodoxin as the electron acceptor.   Pyruvate:ferrodoxin/flavodoxin reductases (PFORs) in this entry occur in both obligately and facultatively anaerobic bacteria and also some eukaryotic microorganisms. These proteins are single-chain enzymes containing a thiamin pyrophosphate cofactor for the cleavage of carbon-carbon bonds next to a carbonyl group, and iron-sulphur clusters for electron transfer. The Desulfovibrio africanus enzyme is currently the only PFOR whose three dimensional structure is known , . It is a homodimer where each subunit contains one thiamin pyrophosphate cofactor and two ferrodoxin-like 4Fe-S clusters and an atypical 4Fe-S cluster. Each monomer is composed of seven domains - domains I, II and VI make intersubunit contacts, while domains III, IV and V are located at the suface of the dimer, and domain VII forms a long arm extending over the other subunit. The cofactor is bound at the interface of domains I and VI and is proximal to the atypical 4Fe-S bound by domain VI, while the ferrodoxin-like 4Fe-S clusters are bound by domain V. Comparison of this enzyme with the multi-chain PFORs shows a correspondance between the domains in this enzyme and the subunits of the multi-chain enzymes.; GO: 0005506 iron ion binding, 0016903 oxidoreductase activity acting on the aldehyde or oxo group of donors, 0006118 electron transport.
Probab=27.10  E-value=47  Score=14.30  Aligned_cols=116  Identities=17%  Similarity=0.163  Sum_probs=60.4

Q ss_pred             CCEEECCCCCCC--C-----------CCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf             972665658974--9-----------889999999999983887569987789899999999864210133332233233
Q gi|254780602|r   31 IDVLCLTAGEPD--F-----------DMPENVKYAVVRAMERGETKYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVG   97 (400)
Q Consensus        31 ~~ii~l~~G~p~--~-----------~~p~~i~~a~~~al~~~~~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~e~I~it   97 (400)
                      ++.++=+.=|||  |           ..|..|++.|.+..+=.-..|....           |    +|- -|+|+|+|+
T Consensus       208 ~P~vRGTaQNPDIYFQ~REa~N~YY~a~P~IVq~yM~~~a~lTGR~Y~Lfd-----------Y----YGa-pdAE~vIi~  271 (1194)
T TIGR02176       208 HPEVRGTAQNPDIYFQGREAVNKYYEAVPEIVQKYMDKIAKLTGRSYHLFD-----------Y----YGA-PDAERVIIA  271 (1194)
T ss_pred             CCEEECCCCCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHCCCCCCCCCC-----------C----CCC-CCCCCEEEE
T ss_conf             775403465877120454143712101335899999887630576567523-----------3----787-020310440


Q ss_pred             CCCC-CCCCCCCCCCCCCCCCCCC-----CCCCCCCC--CCCCCCCCCCCCCC-C-CCC-CCCCCCHHHHHHCCCCCC
Q ss_conf             4543-3332222222332232222-----33332322--22222222222222-2-222-232221033310001221
Q gi|254780602|r   98 TGAK-HVIFNALMATVNMGDEVLI-----PRPYWVSY--PDMVALCGGIPVFV-D-TQQ-DDNFQVSPEKLEQAITPK  164 (400)
Q Consensus        98 ~G~~-~~l~~~~~~~~~~Gd~Vlv-----~~P~y~~y--~~~~~~~g~~~~~v-~-~~~-~~~~~~d~~~l~~~i~~~  164 (400)
                      =||. +.+.-++.-|-++|.+|-+     -.|+=..+  ..+.+  -++.+-| + ++| .....|-..++..++-+.
T Consensus       272 MGSvaeTieEtvdyL~~kG~KvGllkVrLYRPF~~~~F~~~lP~--svK~IAVLDRtKEPGa~GEPLYLDV~~A~~e~  347 (1194)
T TIGR02176       272 MGSVAETIEETVDYLRSKGEKVGLLKVRLYRPFSAETFLAALPK--SVKRIAVLDRTKEPGAAGEPLYLDVRSAFYEM  347 (1194)
T ss_pred             CCCHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCHHHHHHHCCC--CCCEEEEECCCCCCCCCCCCHHHHHHHHHHCC
T ss_conf             58566789999999972893276888751279858999984241--10122212355688655684488899886304


No 441
>cd07564 nitrilases_CHs Nitrilases, cyanide hydratase (CH)s, and similar proteins (class 1 nitrilases). Nitrilases (nitrile aminohydrolases, EC:3.5.5.1) hydrolyze nitriles (RCN) to ammonia and the corresponding carboxylic acid. Most nitrilases prefer aromatic nitriles, some prefer arylacetonitriles and others aliphatic nitriles. This group includes the nitrilase cyanide dihydratase (CDH), which hydrolyzes inorganic cyanide (HCN) to produce formate. It also includes cyanide hydratase (CH), which hydrolyzes HCN to formamide. This group includes four Arabidopsis thaliana nitrilases (Ath)NIT1-4. AthNIT1-3 have a strong substrate preference for phenylpropionitrile (PPN) and other nitriles which may originate from the breakdown of glucosinolates. The product of PPN hydrolysis, phenylacetic acid has auxin activity. AthNIT1-3 can also convert indoacetonitrile to indole-3-acetic acid (IAA, auxin), but with a lower affinity and velocity. From their expression patterns, it has been speculated that
Probab=26.50  E-value=29  Score=15.57  Aligned_cols=19  Identities=11%  Similarity=0.336  Sum_probs=13.2

Q ss_pred             HHHHHHHHHHHCCCCEEEC
Q ss_conf             9999999999869972665
Q gi|254780602|r   18 VAAQRVRDLRSKGIDVLCL   36 (400)
Q Consensus        18 ~~~~~~~~~~~~g~~ii~l   36 (400)
                      .+.+.++++.++|.|+|-|
T Consensus        21 ~~~~~i~~Aa~~ga~lvvf   39 (297)
T cd07564          21 KACRLIEEAAANGAQLVVF   39 (297)
T ss_pred             HHHHHHHHHHHCCCEEEEC
T ss_conf             9999999999889959995


No 442
>COG2057 AtoA Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit [Lipid metabolism]
Probab=26.45  E-value=48  Score=14.23  Aligned_cols=13  Identities=31%  Similarity=0.327  Sum_probs=7.2

Q ss_pred             CCCEEECCCCCCC
Q ss_conf             9972665658974
Q gi|254780602|r   30 GIDVLCLTAGEPD   42 (400)
Q Consensus        30 g~~ii~l~~G~p~   42 (400)
                      +.+++++++|-|.
T Consensus        21 dG~~VnlGIGlPt   33 (225)
T COG2057          21 DGDYVNLGIGLPT   33 (225)
T ss_pred             CCCEEEECCCCHH
T ss_conf             9988985578317


No 443
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional  chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli  do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=26.28  E-value=48  Score=14.21  Aligned_cols=57  Identities=25%  Similarity=0.284  Sum_probs=35.3

Q ss_pred             EEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCC----CCCCEEEEEEECCHHHHHHHHHHHHH
Q ss_conf             9862641023321133224898999999998739799835022----89972899962999999999999999
Q gi|254780602|r  326 LYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSF----GHGPSIRISYAVSDAILEEACVRIKR  394 (400)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~F----g~~~~iRis~~~~~e~l~~al~rl~~  394 (400)
                      +++++++-.+.-          .+ ...+|.+.||.+..-.--    +..|-+|++|. ++++.++|.+.|++
T Consensus         4 l~vdVpD~pG~I----------a~-vt~~L~~~~IsI~nI~Il~~RE~~~GvLri~F~-~~~d~~~A~~~L~~   64 (69)
T cd04909           4 LYVDVPDEPGVI----------AE-VTQILGDAGISIKNIEILEIREGIGGILRISFK-TQEDRERAKEILKE   64 (69)
T ss_pred             EEEECCCCCCHH----------HH-HHHHHHHCCCCEEEEEEEEEECCCCCEEEEEEC-CHHHHHHHHHHHHH
T ss_conf             999679999869----------99-999999879874724876851478847999968-98999999999998


No 444
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=26.19  E-value=49  Score=14.20  Aligned_cols=60  Identities=20%  Similarity=0.264  Sum_probs=40.2

Q ss_pred             HHHHCCCCEEECCCCCCCCCCC-------HHHHHHHHHHHHCCCC------CCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             9998699726656589749889-------9999999999838875------6998778989999999986421
Q gi|254780602|r   25 DLRSKGIDVLCLTAGEPDFDMP-------ENVKYAVVRAMERGET------KYTAVAGISPLREAIVEKFRRD   84 (400)
Q Consensus        25 ~~~~~g~~ii~l~~G~p~~~~p-------~~i~~a~~~al~~~~~------~Y~~~~G~~~lR~aia~~~~~~   84 (400)
                      ++.+.|..+=-|+.|-+.+|.-       +.+.+.+..+++.|.+      .|....+.+.+++|++++++..
T Consensus         5 ~~~k~g~~~s~lgfG~MRlp~~~~~~id~~~~~~~i~~aie~GiNyidTA~~Yh~g~sE~~lgkaL~~~~Rek   77 (391)
T COG1453           5 KFPKTGDELSILGFGCMRLPLKEQGSIDEENANETIDYAIEHGINYIDTAWPYHGGESEEFLGKALKDGYREK   77 (391)
T ss_pred             HCCCCCCCCCEECCCEEECCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHCCCCE
T ss_conf             1488876232011222302234678744999999999999728764762032458874699999864215113


No 445
>pfam04002 DUF2466 Protein of unknown function (DUF2466). This family was named initially with reference to the E. coli radC102 mutation which suggested that RadC was involved in repair of DNA lesions. However the relevant mutation has subsequently been shown to be in recG, where radC is in fact an allele of recG. In addition, a personal communication from Claverys, J-P, et al, indicates a total failure of all attempts to characterize a radiation-related function for RadC in Streptococcus pneumoniae, suggesting that it is not involved in repair of DNA lesions, in recombination during transformation, in gene conversion, nor in mismatch repair.
Probab=25.80  E-value=18  Score=16.85  Aligned_cols=58  Identities=17%  Similarity=0.305  Sum_probs=29.8

Q ss_pred             HHHCCCCCCCCCEEECCCCCCCCCCCC-CCCC---CCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCC
Q ss_conf             310001221220121135421000012-3333---2111223333320111012211000001223322
Q gi|254780602|r  156 KLEQAITPKTKWLFLNSPSNPSGVVYS-QNRL---RALADVLVRNPHVHIISDDIYEHIVYRNCQFSNI  220 (400)
Q Consensus       156 ~l~~~i~~~~k~i~l~nP~NPTG~v~s-~~~l---~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~  220 (400)
                      -++.++..+...+++++ |.|+|..-+ .+++   ++|.+.+ +--++.++ |    +++..+..+.|+
T Consensus        56 I~~~Al~~~A~~iIl~H-NHPSG~~~PS~~D~~~T~~l~~a~-~~l~I~ll-D----HiIv~~~~~~S~  117 (123)
T pfam04002        56 IFKRALRLNAAAVILAH-NHPSGDPTPSQADIELTKRLKEAG-ELLGIRLL-D----HIIIGDGGYFSF  117 (123)
T ss_pred             HHHHHHHCCCCEEEEEE-CCCCCCCCCCHHHHHHHHHHHHHH-HHCCCEEE-E----EEEEECCCEEEH
T ss_conf             99999983898699983-189998995887999999999999-76898797-3----899969939985


No 446
>COG0061 nadF NAD kinase [Coenzyme metabolism]
Probab=25.70  E-value=17  Score=16.93  Aligned_cols=26  Identities=15%  Similarity=0.230  Sum_probs=14.0

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             32233233454333322222223322
Q gi|254780602|r   90 TSDQIIVGTGAKHVIFNALMATVNMG  115 (400)
Q Consensus        90 ~~e~I~it~G~~~~l~~~~~~~~~~G  115 (400)
                      +...++++-|+-.-+..+.+.+.+.+
T Consensus        54 ~~~d~ivvlGGDGtlL~~~~~~~~~~   79 (281)
T COG0061          54 EKADLIVVLGGDGTLLRAARLLARLD   79 (281)
T ss_pred             CCCEEEEEECCCHHHHHHHHHHCCCC
T ss_conf             77649999899689999999745569


No 447
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=25.56  E-value=44  Score=14.48  Aligned_cols=25  Identities=12%  Similarity=0.259  Sum_probs=9.8

Q ss_pred             HHHHHHHHHHHHHC--CCC-EEECCCCC
Q ss_conf             99999999999986--997-26656589
Q gi|254780602|r   16 TLVAAQRVRDLRSK--GID-VLCLTAGE   40 (400)
Q Consensus        16 ~~~~~~~~~~~~~~--g~~-ii~l~~G~   40 (400)
                      .-.+..++..|...  ++. ||--|.||
T Consensus       434 ~~a~ldR~~rmv~RDKNHPSII~WSLGN  461 (1027)
T PRK09525        434 LPAMSERVTRMVQRDRNHPSIIIWSLGN  461 (1027)
T ss_pred             HHHHHHHHHHHHHHHCCCCEEEEEEECC
T ss_conf             9999999999988515886389996045


No 448
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ; InterPro: IPR012802   Members of this family represent the alpha subunit of the multifunctional enzyme complex of the fatty acid degradation cycle, which plays a minor role in aerobic beta-oxidation of fatty acids. The FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (4.2.1.17 from EC), 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC), and 3-hydroxybutyryl-CoA epimerase (5.1.2.3 from EC). A representative is the Escherichia coli FadJ protein (also named YfcX) (P77399 from SWISSPROT). This entry excludes FadB of IPR012799 from INTERPRO.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0004300 enoyl-CoA hydratase activity, 0008692 3-hydroxybutyryl-CoA epimerase activity, 0051287 NAD binding, 0006635 fatty acid beta-oxidation, 0016507 fatty acid beta-oxidation multienzyme complex.
Probab=25.34  E-value=50  Score=14.11  Aligned_cols=29  Identities=17%  Similarity=0.390  Sum_probs=15.0

Q ss_pred             CCCCCCCCCCCCCCCCCCCC----CCCCCCCCCC
Q ss_conf             33233454333322222223----3223222233
Q gi|254780602|r   93 QIIVGTGAKHVIFNALMATV----NMGDEVLIPR  122 (400)
Q Consensus        93 ~I~it~G~~~~l~~~~~~~~----~~Gd~Vlv~~  122 (400)
                      ++++|+- ++||-.+|.+.+    ++|..=..|.
T Consensus       273 EL~m~~~-S~ALRSiFFAtT~~KKe~Gs~GA~p~  305 (732)
T TIGR02440       273 ELVMSPE-SAALRSIFFATTEMKKETGSDGATPR  305 (732)
T ss_pred             CCCCCHH-HHHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf             4223602-46778788863003467787777632


No 449
>TIGR01873 cas_CT1978 CRISPR-associated protein Cas2; InterPro: IPR010152   This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas proteins are found adjacent to a characteristic short, palindromic repeat cluster termed CRISPR, a probable mobile DNA element..
Probab=24.01  E-value=53  Score=13.95  Aligned_cols=69  Identities=9%  Similarity=0.031  Sum_probs=46.0

Q ss_pred             CCHHHHHHHHHHHHCCCC-CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCC
Q ss_conf             899999999999838875-6998778989999999986421013333223323345433332-222222332
Q gi|254780602|r   45 MPENVKYAVVRAMERGET-KYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIF-NALMATVNM  114 (400)
Q Consensus        45 ~p~~i~~a~~~al~~~~~-~Y~~~~G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l~-~~~~~~~~~  114 (400)
                      .||.++=.++-.+-+-.- =|-.+.=...+|+.|-+++.+.|| .++..++++|..+.-.-- ..|.++-++
T Consensus         9 ~ppr~RGrL~~wl~E~rAgVYv~P~~~~~vr~~iwd~l~q~yG-~~~~g~~v~~wa~~t~~GG~~~~~lG~~   79 (91)
T TIGR01873         9 VPPRLRGRLALWLLEVRAGVYVGPRVSAKVRERIWDELAQLYG-CLEKGSIVITWASNTESGGFEFATLGEN   79 (91)
T ss_pred             CCCCHHHHHHHHHHHHCCCCEECCCCCHHHHHHHHHHHCCCCC-CCCCCCEEEEECCCCCCCCCEEEECCCC
T ss_conf             9900125788888751788223576263678888886512225-3475877887448788867123305855


No 450
>KOG1252 consensus
Probab=23.93  E-value=11  Score=18.02  Aligned_cols=99  Identities=16%  Similarity=0.164  Sum_probs=49.3

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCC---HHHHHHCCCCCCCCCEE--
Q ss_conf             345433332222222332232222333323222--22222222222222222232221---03331000122122012--
Q gi|254780602|r   97 GTGAKHVIFNALMATVNMGDEVLIPRPYWVSYP--DMVALCGGIPVFVDTQQDDNFQV---SPEKLEQAITPKTKWLF--  169 (400)
Q Consensus        97 t~G~~~~l~~~~~~~~~~Gd~Vlv~~P~y~~y~--~~~~~~g~~~~~v~~~~~~~~~~---d~~~l~~~i~~~~k~i~--  169 (400)
                      |+| .-|+.+++.+-+ .|=++++.-|..-.-+  ..++.+|++++..|...  ++.-   -.+.-+...++-+.+++  
T Consensus       111 TSG-NtGigLA~~~a~-~Gyk~i~tmP~~ms~Ek~~~l~a~Gaeii~tp~a~--~~~~~e~ai~~a~~l~~~~pna~~l~  186 (362)
T KOG1252         111 TSG-NTGIGLAYMAAL-RGYKCIITMPEKMSKEKRILLRALGAEIILTPPAA--GMKGPESAIGKAEELLNKTPNAYILD  186 (362)
T ss_pred             CCC-CHHHHHHHHHHH-CCCEEEEEECHHHHHHHHHHHHHCCCEEEECCHHH--CCCCHHHHHHHHHHHHHHCCCHHHHH
T ss_conf             998-538999999997-39639999042451789999997188799568687--24771889999999998688738788


Q ss_pred             -ECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf             -11354210000123333211122333332011
Q gi|254780602|r  170 -LNSPSNPSGVVYSQNRLRALADVLVRNPHVHI  201 (400)
Q Consensus       170 -l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~i  201 (400)
                       ++||.||. . .....-.+|..-+..+-|+++
T Consensus       187 Qf~np~Np~-~-hy~ttg~EI~~q~~g~vDi~V  217 (362)
T KOG1252         187 QFHNPGNPL-A-HYETTGPEIWRQLDGKVDIFV  217 (362)
T ss_pred             HHCCCCCCC-C-CCCCCCHHHHHHHCCCCCEEE
T ss_conf             742888853-0-125642899998269977899


No 451
>pfam07302 AroM AroM protein. This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL. The function of this family is unknown.
Probab=23.76  E-value=54  Score=13.92  Aligned_cols=28  Identities=11%  Similarity=0.167  Sum_probs=17.0

Q ss_pred             EECCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf             41465443223445444221101226875
Q gi|254780602|r  233 VVNGVSKAYAMTGLRIGYAAGALSLIKSM  261 (400)
Q Consensus       233 ~~~S~SK~~~~~G~RiG~~v~~~~li~~l  261 (400)
                      ++.++-+++. +|-|+|.++--++.++..
T Consensus       114 il~~lV~a~~-~~~~lGVvvP~~eQ~~~~  141 (221)
T pfam07302       114 ILPPLVASIV-DGHQLGVIVPLPEQISQQ  141 (221)
T ss_pred             HHHHHHHHHC-CCCEEEEEECCHHHHHHH
T ss_conf             6789999867-898599995579999999


No 452
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein; InterPro: IPR011918    This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins ..
Probab=23.29  E-value=45  Score=14.41  Aligned_cols=10  Identities=30%  Similarity=0.600  Sum_probs=5.3

Q ss_pred             CHHHHHHCCC
Q ss_conf             1033310001
Q gi|254780602|r  152 VSPEKLEQAI  161 (400)
Q Consensus       152 ~d~~~l~~~i  161 (400)
                      .||+++.+.+
T Consensus       407 ~dP~~lR~~~  416 (576)
T TIGR02204       407 LDPADLRARI  416 (576)
T ss_pred             CCCHHHHHHC
T ss_conf             6808788344


No 453
>PRK10717 cysteine synthase A; Provisional
Probab=23.22  E-value=53  Score=13.95  Aligned_cols=80  Identities=20%  Similarity=0.145  Sum_probs=41.4

Q ss_pred             CCCCCCCHHHHHHHHHHHHH-HCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             99877898999999998642-1013333223-32334543333222222233223--22223333232222222222222
Q gi|254780602|r   64 YTAVAGISPLREAIVEKFRR-DNDLHYTSDQ-IIVGTGAKHVIFNALMATVNMGD--EVLIPRPYWVSYPDMVALCGGIP  139 (400)
Q Consensus        64 Y~~~~G~~~lR~aia~~~~~-~~g~~~~~e~-I~it~G~~~~l~~~~~~~~~~Gd--~Vlv~~P~y~~y~~~~~~~g~~~  139 (400)
                      +-.+.|....|-|..--... +.| .+.|.. |+-.+++..|+.++..+-. .|=  .|++|.=.=..-...++.+|+++
T Consensus        36 ~~nptGS~KdR~A~~~i~~a~~~G-~l~~g~~vveaSSGN~g~alA~~a~~-~G~~~~iv~p~~~~~~k~~~i~~~GAeV  113 (334)
T PRK10717         36 FLNPGGSVKDRAALNIIRDAEKRG-LLKPGGTIVEGTAGNTGIGLALVAAA-RGYKTVIVMPETQSQEKKDLLRALGAEL  113 (334)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHCC-CCCCCCEEEEECCCCHHHHHHHHHHH-CCCCEEEEECCCCHHHHHHHHHHCCCEE
T ss_conf             589756819999999999999839-98899889982797389999999998-0996599956854599999999759839


Q ss_pred             CCCCCC
Q ss_conf             222222
Q gi|254780602|r  140 VFVDTQ  145 (400)
Q Consensus       140 ~~v~~~  145 (400)
                      +.++..
T Consensus       114 i~v~~~  119 (334)
T PRK10717        114 VEVPAV  119 (334)
T ss_pred             EECCCC
T ss_conf             976885


No 454
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=23.14  E-value=55  Score=13.85  Aligned_cols=49  Identities=14%  Similarity=0.049  Sum_probs=22.6

Q ss_pred             CHHHHHHHHHHHHHHCCCC--CC---C--CCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             9899999999864210133--33---2--23323345433332222222332232222
Q gi|254780602|r   70 ISPLREAIVEKFRRDNDLH--YT---S--DQIIVGTGAKHVIFNALMATVNMGDEVLI  120 (400)
Q Consensus        70 ~~~lR~aia~~~~~~~g~~--~~---~--e~I~it~G~~~~l~~~~~~~~~~Gd~Vlv  120 (400)
                      .-.|...|+++.... ||.  +.   +  ..|.|--++-.||..+ .-|...|-.|-|
T Consensus       283 Ig~LERfi~D~a~~~-g~~p~~~~~~~~gkKVAVIGsGPAGLaaA-~~Lar~G~~VTV  338 (639)
T PRK12809        283 IGNLERYITDTALAM-GWRPDVSKVVPRSEKVAVIGAGPAGLGCA-DILARAGVQVDV  338 (639)
T ss_pred             ECHHHHHHHHHHHHH-CCCCCCCCCCCCCCEEEEECCCHHHHHHH-HHHHHCCCCEEE
T ss_conf             888999999999983-99888777688899899989758999999-999975990699


No 455
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein; InterPro: IPR012693   ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs.   ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain .    The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , .   The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , .   Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1).     Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.; GO: 0005524 ATP binding, 0015416 phosphonate transmembrane-transporting ATPase activity, 0015716 phosphonate transport, 0016020 membrane.
Probab=23.02  E-value=25  Score=15.93  Aligned_cols=25  Identities=24%  Similarity=0.339  Sum_probs=10.8

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             54333322222223322322223333
Q gi|254780602|r   99 GAKHVIFNALMATVNMGDEVLIPRPY  124 (400)
Q Consensus        99 G~~~~l~~~~~~~~~~Gd~Vlv~~P~  124 (400)
                      ++.++|.. +..-++||+=|.+-.|+
T Consensus        13 ~g~~~LK~-inl~i~~GE~~~~IG~S   37 (253)
T TIGR02315        13 NGKQALKN-INLEINPGEFVAVIGPS   37 (253)
T ss_pred             CCCEEEEE-ECCEEECCEEEEEECCC
T ss_conf             98378853-11434165179997378


No 456
>TIGR00715 precor6x_red precorrin-6x reductase; InterPro: IPR003723   Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase . In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase .    There are at least two distinct cobalamin biosynthetic pathways in bacteria :  Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway ; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis ; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii shermanii.     Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) . There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans.   This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y , .; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process.
Probab=22.85  E-value=28  Score=15.68  Aligned_cols=13  Identities=15%  Similarity=0.256  Sum_probs=8.3

Q ss_pred             HHHHHHHHHHHCC
Q ss_conf             9999999998609
Q gi|254780602|r  388 ACVRIKRFCHSLQ  400 (400)
Q Consensus       388 al~rl~~~l~~l~  400 (400)
                      -++++.+|+.+|+
T Consensus       247 ~~~~~~~~v~~~~  259 (260)
T TIGR00715       247 DIDELAKFVAKLL  259 (260)
T ss_pred             CHHHHHHHHHHCC
T ss_conf             7799999996148


No 457
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, 
Probab=22.63  E-value=28  Score=15.69  Aligned_cols=40  Identities=13%  Similarity=0.154  Sum_probs=13.7

Q ss_pred             HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             99999999864210133332233233454333322222223
Q gi|254780602|r   72 PLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFNALMATV  112 (400)
Q Consensus        72 ~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l~~~~~~~~  112 (400)
                      ...+.+.+|+....+.+--.+.+.+-.| .+++..++...+
T Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~Av~HLfrVas  101 (311)
T cd05213          62 KLADELEELLAELLNEPELREYLYVGRG-QDAVRHLFRVAS  101 (311)
T ss_pred             HHHHHHHHHHHHCCCHHHHCCCEEEECC-HHHHHHHHHHHH
T ss_conf             3899999998730880332043578647-899999999872


No 458
>TIGR00877 purD phosphoribosylamine--glycine ligase; InterPro: IPR000115   Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase)  catalyzes the second step in the de novo biosynthesis of purine:  ATP + 5-phosphoribosylamine + glycine = ADP + P_i + 5'-phosphoribosylglycinamide  In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART.; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process.
Probab=22.44  E-value=57  Score=13.76  Aligned_cols=26  Identities=23%  Similarity=0.207  Sum_probs=17.5

Q ss_pred             EE-EEECCHHHHHHHHHHHHHHHHHCC
Q ss_conf             99-962999999999999999998609
Q gi|254780602|r  375 RI-SYAVSDAILEEACVRIKRFCHSLQ  400 (400)
Q Consensus       375 Ri-s~~~~~e~l~~al~rl~~~l~~l~  400 (400)
                      |+ +.+..-++|.+|-++=.+.++.++
T Consensus       417 RVL~V~a~g~~l~eA~~~Ay~a~~~i~  443 (459)
T TIGR00877       417 RVLAVVALGKDLEEARERAYEAVEKIK  443 (459)
T ss_pred             EEEEEEECCCCHHHHHHHHHHHHHHHC
T ss_conf             399998326257899999999887513


No 459
>COG3458 Acetyl esterase (deacetylase) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=22.08  E-value=35  Score=15.03  Aligned_cols=10  Identities=50%  Similarity=0.624  Sum_probs=4.6

Q ss_pred             CEEEEECCCCC
Q ss_conf             22574146544
Q gi|254780602|r  229 ERTLVVNGVSK  239 (400)
Q Consensus       229 ~~~i~~~S~SK  239 (400)
                      +| |.+++-|-
T Consensus       176 ~R-i~v~G~Sq  185 (321)
T COG3458         176 ER-IGVTGGSQ  185 (321)
T ss_pred             HH-EEEECCCC
T ss_conf             14-67733666


No 460
>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family; InterPro: IPR011896    A number of anaerobic and microaerophilic species lack pyruvate dehydrogenase and have instead a four subunit, oxygen-sensitive pyruvate oxidoreductase, with either ferredoxins or flavodoxins used as the acceptor. Several related four-subunit enzymes may exist in the same species. This entry describes the beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes..
Probab=21.72  E-value=59  Score=13.67  Aligned_cols=60  Identities=20%  Similarity=0.275  Sum_probs=36.5

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             69987789899999999864210133332233233454333322222223322322223333232222222222222222
Q gi|254780602|r   63 KYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDMVALCGGIPVFV  142 (400)
Q Consensus        63 ~Y~~~~G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l~~~~~~~~~~Gd~Vlv~~P~y~~y~~~~~~~g~~~~~v  142 (400)
                      ..||..|..--++|+.+=+..   ++++|+||+|.+|    |-.+.++            |.|.+-..+..++| +.+++
T Consensus         2 ~WCPGCGDFGIL~AL~~AL~E---L~LdP~qvvVVSG----IGCS~kt------------PhY~n~~g~h~LHG-RA~P~   61 (302)
T TIGR02177         2 DWCPGCGDFGILSALQKALAE---LNLDPEQVVVVSG----IGCSAKT------------PHYVNVNGFHGLHG-RALPV   61 (302)
T ss_pred             CCCCCCCCHHHHHHHHHHHHH---HCCCCCCEEEEEC----CCCCCCC------------CCCCCCCCCCCCCC-CCCHH
T ss_conf             868898867789999999986---2889852799813----1311347------------73001366452335-63101


No 461
>PRK12564 carbamoyl phosphate synthase small subunit; Reviewed
Probab=21.63  E-value=28  Score=15.69  Aligned_cols=11  Identities=36%  Similarity=0.893  Sum_probs=3.8

Q ss_pred             CEEECC-CCCCC
Q ss_conf             012113-54210
Q gi|254780602|r  167 WLFLNS-PSNPS  177 (400)
Q Consensus       167 ~i~l~n-P~NPT  177 (400)
                      +|+|+| |.||.
T Consensus       215 GIflSNGPGDP~  226 (355)
T PRK12564        215 GVFLSNGPGDPA  226 (355)
T ss_pred             EEEECCCCCCHH
T ss_conf             899679999968


No 462
>KOG3220 consensus
Probab=21.52  E-value=6.5  Score=19.50  Aligned_cols=79  Identities=16%  Similarity=0.323  Sum_probs=43.2

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCC-C-CCCCCEE--ECCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             233332322222222222222222222232221033310001-2-2122012--11354210000123333211122333
Q gi|254780602|r  120 IPRPYWVSYPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQAI-T-PKTKWLF--LNSPSNPSGVVYSQNRLRALADVLVR  195 (400)
Q Consensus       120 v~~P~y~~y~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i-~-~~~k~i~--l~nP~NPTG~v~s~~~l~~i~~~~a~  195 (400)
                      +..|++|.|..+.+..|-++    +.+++  .++.+.|-+.+ + ++-+.++  +++|      .+..+-++++....++
T Consensus        38 vv~PG~p~~~~ive~FG~ei----Ll~~G--~inR~~LG~~vF~~~~~r~~Ln~IthP------~Ir~em~ke~~~~~l~  105 (225)
T KOG3220          38 VVEPGTPAYRRIVEAFGTEI----LLEDG--EINRKVLGKRVFSDPKKRQALNKITHP------AIRKEMFKEILKLLLR  105 (225)
T ss_pred             HHCCCCHHHHHHHHHHCCEE----ECCCC--CCCHHHHHHHHHCCHHHHHHHHHCCCH------HHHHHHHHHHHHHHHC
T ss_conf             85599807899999848400----05688--416899867870898899998731338------9999999999999966


Q ss_pred             CCCCEEECCCCCCCCCCCC
Q ss_conf             3320111012211000001
Q gi|254780602|r  196 NPHVHIISDDIYEHIVYRN  214 (400)
Q Consensus       196 ~~~i~ii~De~Y~~l~~~~  214 (400)
                      -+ -++|.|-+   +.|+.
T Consensus       106 G~-r~ivlDiP---LLFE~  120 (225)
T KOG3220         106 GY-RVIVLDIP---LLFEA  120 (225)
T ss_pred             CC-EEEEEECH---HHHHH
T ss_conf             88-28999226---88887


No 463
>TIGR01737 FGAM_synth_I phosphoribosylformylglycinamidine synthase I; InterPro: IPR010075   In some species, phosphoribosylformylglycinamidine synthase is composed of a single polypeptide chain. This entry describes the PurQ protein of Bacillus subtilis (where PurL, PurQ, and PurS are required for phosphoribosylformylglycinamidine synthase activity) and functionally equivalent proteins from other bacteria and archaea.; GO: 0004642 phosphoribosylformylglycinamidine synthase activity, 0006189 'de novo' IMP biosynthetic process, 0005737 cytoplasm.
Probab=21.47  E-value=60  Score=13.64  Aligned_cols=136  Identities=16%  Similarity=0.217  Sum_probs=69.8

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCC-CCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCC--CCCCCCCCH
Q ss_conf             0001233332111223333320111012211000-0012233222111233322574146544322344--544422110
Q gi|254780602|r  178 GVVYSQNRLRALADVLVRNPHVHIISDDIYEHIV-YRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTG--LRIGYAAGA  254 (400)
Q Consensus       178 G~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~-~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~~~G--~RiG~~v~~  254 (400)
                      |+.-+.+...++.+++=.+ -.+|-.-.=|.+.. +++.+  |...     +|-||.=++||     .|  +|+|.+.+-
T Consensus        10 GtNCd~D~~~A~~k~~Gv~-~~~Vhikqw~~D~~r~~~~r--svfD-----~D~VvlPGGFS-----yGDYLRaGAIAa~   76 (264)
T TIGR01737        10 GTNCDRDTVYALEKLLGVD-AEIVHIKQWYEDKSRLSDQR--SVFD-----YDAVVLPGGFS-----YGDYLRAGAIAAL   76 (264)
T ss_pred             CCCCHHHHHHHHHHHCCCC-EEEEEEEECHHHHCCCCCCC--EEEE-----EEEEEECCCCC-----HHHHHHHHHHHHH
T ss_conf             9984089999999714998-37998652100004787664--1787-----33488668777-----2357779999987


Q ss_pred             ---HHHHHHHHHHCC--CCCCCCCCCCCCCCCCCCCCC--------------------CCCCCCCCC-CCCCCCCCHHHH
Q ss_conf             ---122687531001--222332222222222223467--------------------643222222-110000000245
Q gi|254780602|r  255 ---LSLIKSMIVLQG--QQTSGACSIAQWAAVEALNGP--------------------QDFVVNNRK-IFEYRRDLCVAQ  308 (400)
Q Consensus       255 ---~~li~~l~~~~~--~~~~~~~~~~q~a~~~~l~~~--------------------~~~~~~~~~-~~~~~r~~~~~~  308 (400)
                         ..+++.+.....  ....|.+.=.|..+..-|-.+                    ..++-+... +...++..+++.
T Consensus        77 rvk~p~~~~V~~~A~~G~pVLGiCNGFQIL~E~GLLpGfDeDkPlaekPemAL~~N~~~rFisr~v~LrV~n~~T~FT~~  156 (264)
T TIGR01737        77 RVKSPIMQEVREFAEKGKPVLGICNGFQILVEAGLLPGFDEDKPLAEKPEMALLPNASLRFISRWVYLRVENADTAFTKK  156 (264)
T ss_pred             HCCHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCCCCCCCCCCCHHHHHCCCCCCCEEEEEEEEEEECCCHHHHC
T ss_conf             50308899999999559828997664799999762489887887435712244205889745320368998567836635


Q ss_pred             HHCCC--CCEEEECCCCEEE
Q ss_conf             53047--7603302740899
Q gi|254780602|r  309 LQGVP--GIRYMIPDGAFYL  326 (400)
Q Consensus       309 L~~~~--g~~~~~p~g~~y~  326 (400)
                      +++=.  -+.+-+-||-||+
T Consensus       157 y~kGev~~~PiAHgEGrYy~  176 (264)
T TIGR01737       157 YKKGEVIRVPIAHGEGRYYA  176 (264)
T ss_pred             CCCCCEEEEEEEECCCCEEC
T ss_conf             79887887654425872662


No 464
>KOG2928 consensus
Probab=21.09  E-value=36  Score=15.01  Aligned_cols=53  Identities=17%  Similarity=0.358  Sum_probs=35.4

Q ss_pred             CCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE--CCCCCCCCCCCCCCCCC
Q ss_conf             22012113542100001233332111223333320111--01221100000122332
Q gi|254780602|r  165 TKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHII--SDDIYEHIVYRNCQFSN  219 (400)
Q Consensus       165 ~k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii--~De~Y~~l~~~~~~~~s  219 (400)
                      .++++++  ||=-|-.+-.+..++++..++.-++|.||  .|-+|..|.+|.....+
T Consensus       327 ~kl~LvV--hNiDg~~Lr~~~~Q~~L~~Lss~~nI~liASvDHInapllWD~~~~ss  381 (518)
T KOG2928         327 QKLILVV--HNIDGPMLRDEKFQAILARLSSIDNIALIASVDHINAPLLWDDVKLSS  381 (518)
T ss_pred             CEEEEEE--ECCCCHHHCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEECCHHHHCC
T ss_conf             4189999--626824322617999999863577537998603347621203234234


No 465
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=20.88  E-value=22  Score=16.33  Aligned_cols=31  Identities=19%  Similarity=0.279  Sum_probs=25.3

Q ss_pred             CCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC
Q ss_conf             23333211122333332011101221100000
Q gi|254780602|r  182 SQNRLRALADVLVRNPHVHIISDDIYEHIVYR  213 (400)
Q Consensus       182 s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~  213 (400)
                      ++++++++++.| .+.+|-||.|=+|.+|.-+
T Consensus       212 tPedfk~fVD~a-H~~GIgViLD~V~~HF~~d  242 (628)
T COG0296         212 TPEDFKALVDAA-HQAGIGVILDWVPNHFPPD  242 (628)
T ss_pred             CHHHHHHHHHHH-HHCCCEEEEEECCCCCCCC
T ss_conf             989999999999-8769989997557768987


No 466
>pfam02662 FlpD Methyl-viologen-reducing hydrogenase, delta subunit. This family consist of methyl-viologen-reducing hydrogenase, delta subunit / heterodisulphide reductase. No specific functions have been assigned to this subunit. The aligned region corresponds to almost the entire delta chain sequence and contains 4 conserved cysteine residues. However, in two Archaeoglobus sequences this region corresponds to only the C-terminus of these proteins.
Probab=20.78  E-value=19  Score=16.71  Aligned_cols=40  Identities=15%  Similarity=0.279  Sum_probs=17.3

Q ss_pred             CHHHHHHCCCCCCCCCEEE--CCC---CCCCCCCCCCCCCCCCCC
Q ss_conf             1033310001221220121--135---421000012333321112
Q gi|254780602|r  152 VSPEKLEQAITPKTKWLFL--NSP---SNPSGVVYSQNRLRALAD  191 (400)
Q Consensus       152 ~d~~~l~~~i~~~~k~i~l--~nP---~NPTG~v~s~~~l~~i~~  191 (400)
                      ++++.+.+++......+++  |.|   |+.+|..+.++++..+-+
T Consensus        40 v~~~~il~A~~~GADGV~V~GC~~GdChy~~Gn~~a~~Rv~~~~~   84 (124)
T pfam02662        40 VNPSLILKALEKGADGVLVLGCHPGDCHYLKGNEKARRRVEKVKE   84 (124)
T ss_pred             CCHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf             499999999986999799947888887672646999999999999


No 467
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=20.53  E-value=39  Score=14.77  Aligned_cols=12  Identities=8%  Similarity=0.138  Sum_probs=6.4

Q ss_pred             CCCCCCCEEECC
Q ss_conf             122122012113
Q gi|254780602|r  161 ITPKTKWLFLNS  172 (400)
Q Consensus       161 i~~~~k~i~l~n  172 (400)
                      +.++-++.+++|
T Consensus       125 L~~~y~L~iITN  136 (238)
T PRK10748        125 LAKKWPLVAITN  136 (238)
T ss_pred             HHHCCEEEEEEC
T ss_conf             973471899957


No 468
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=20.41  E-value=63  Score=13.51  Aligned_cols=83  Identities=12%  Similarity=0.196  Sum_probs=38.3

Q ss_pred             CCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCC
Q ss_conf             21220121135421000012333321112233333201110122110000012233222111233322574146544322
Q gi|254780602|r  163 PKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYA  242 (400)
Q Consensus       163 ~~~k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~  242 (400)
                      .+...|+|+.|+      -+.++++++++. ++ .-++.++=.   ..  .|.+-. ...   ...+.+=.+..++.   
T Consensus       146 ~gi~~I~lvaPt------t~~~rl~~i~~~-a~-GFiY~vs~~---Gv--TG~~~~-~~~---~~~~~v~~vr~~~~---  205 (265)
T COG0159         146 HGIDPIFLVAPT------TPDERLKKIAEA-AS-GFIYYVSRM---GV--TGARNP-VSA---DVKELVKRVRKYTD---  205 (265)
T ss_pred             CCCCEEEEECCC------CCHHHHHHHHHH-CC-CCEEEEECC---CC--CCCCCC-CCH---HHHHHHHHHHHHCC---
T ss_conf             698679886999------998999999974-79-858999666---66--677765-304---69999999997448---


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf             344544422110122687531001
Q gi|254780602|r  243 MTGLRIGYAAGALSLIKSMIVLQG  266 (400)
Q Consensus       243 ~~G~RiG~~v~~~~li~~l~~~~~  266 (400)
                      .| .=+||-+.+++-++++....+
T Consensus       206 ~P-v~vGFGIs~~e~~~~v~~~AD  228 (265)
T COG0159         206 VP-VLVGFGISSPEQAAQVAEAAD  228 (265)
T ss_pred             CC-EEEECCCCCHHHHHHHHHHCC
T ss_conf             97-387448699999999997688


No 469
>pfam00728 Glyco_hydro_20 Glycosyl hydrolase family 20, catalytic domain. This domain has a TIM barrel fold.
Probab=20.31  E-value=23  Score=16.21  Aligned_cols=25  Identities=8%  Similarity=0.025  Sum_probs=14.0

Q ss_pred             HHHHHHHHHHHHHHCCCCEEECCCC
Q ss_conf             8999999999999869972665658
Q gi|254780602|r   15 ATLVAAQRVRDLRSKGIDVLCLTAG   39 (400)
Q Consensus        15 ~~~~~~~~~~~~~~~g~~ii~l~~G   39 (400)
                      +.-.+.+.++.|..-...++++.+-
T Consensus        16 ~~~~lk~~id~ma~~K~N~lhlHlt   40 (335)
T pfam00728        16 SVDTIKRLIDAMAFYKLNVLHWHLT   40 (335)
T ss_pred             CHHHHHHHHHHHHHHCCCEEEEEEE
T ss_conf             9999999999999828967999985


No 470
>TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase; InterPro: IPR004631 4-aminobutyrate aminotransferase eukaryotic (2.6.1.19 from EC) is a class III pyridoxal-phosphate-dependent aminotransferase. The enzyme catalyses the conversion of 4-aminobutanoate and 2-oxoglutarate into succinate semialdehyde and L-glutamate. The degree of sequence difference between this set and known bacterial examples is greater than the distance between either set the most similar enzyme with distinct function, and so the prokaryotic and eukaryotic sets have been placed into separate families. This family describes known eukaryotic examples of the enzyme. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.; GO: 0003867 4-aminobutyrate transaminase activity, 0009448 gamma-aminobutyric acid metabolic process.
Probab=20.07  E-value=20  Score=16.59  Aligned_cols=176  Identities=17%  Similarity=0.183  Sum_probs=85.7

Q ss_pred             CCCCCCCC---CCC--CCHHHHHHCCCCC-----CCCCEEECCC-CCCCC-CCCCCCCCCCCCCCCCCCCCCEEECCCCC
Q ss_conf             22222222---322--2103331000122-----1220121135-42100-00123333211122333332011101221
Q gi|254780602|r  140 VFVDTQQD---DNF--QVSPEKLEQAITP-----KTKWLFLNSP-SNPSG-VVYSQNRLRALADVLVRNPHVHIISDDIY  207 (400)
Q Consensus       140 ~~v~~~~~---~~~--~~d~~~l~~~i~~-----~~k~i~l~nP-~NPTG-~v~s~~~l~~i~~~~a~~~~i~ii~De~Y  207 (400)
                      ..|||+|-   |.=  .--++++|+++..     ||-+-+++=| +-=-| .--|++.+++|-+++ ++||+..|+||+=
T Consensus       221 LkYPLeE~~~~N~~Ee~rCL~~vE~L~~~~~~pkrtVaA~IvEPIQSEGGDNHAS~~Ff~KLr~i~-~k~~v~FivDEVQ  299 (469)
T TIGR00699       221 LKYPLEEHVEENAKEEQRCLEEVEDLIKKWHKPKRTVAAIIVEPIQSEGGDNHASPDFFRKLRDIT-KKHNVAFIVDEVQ  299 (469)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHH-HHCCCEEEEEEEE
T ss_conf             678702325754558889999999999731798615888886243478885343378889999999-8859568996455


Q ss_pred             CCCCCCCCCCCCCCCCCCCCC--CEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCC-CC-CCCCCCCCCCCC
Q ss_conf             100000122332221112333--22574146544322344544422110122687531001222-33-222222222222
Q gi|254780602|r  208 EHIVYRNCQFSNIVNVEPSLY--ERTLVVNGVSKAYAMTGLRIGYAAGALSLIKSMIVLQGQQT-SG-ACSIAQWAAVEA  283 (400)
Q Consensus       208 ~~l~~~~~~~~s~~~~~~~~~--~~~i~~~S~SK~~~~~G~RiG~~v~~~~li~~l~~~~~~~~-~~-~~~~~q~a~~~~  283 (400)
                      -...=.|    .+++-+  .+  +.=.=+-||||-+- +|   ||--.++++.= =.-+++..+ .| |+.-.+.  ...
T Consensus       300 TGvGaTG----klWAHe--~W~L~~P~D~vtFSKK~q-tA---GyFFH~~~lrP-n~pYr~FNTW~GdP~r~l~~--~~i  366 (469)
T TIGR00699       300 TGVGATG----KLWAHE--HWNLDDPPDMVTFSKKFQ-TA---GYFFHDPALRP-NKPYRQFNTWMGDPSRALIL--REI  366 (469)
T ss_pred             ECCCCCC----CCCCCC--CCCCCCCCCCEEECHHHH-CC---CCCCCCCCCCC-CCCCCCCCCCCCCHHHHHHH--HHH
T ss_conf             0878863----312300--274111385022045641-27---64236735688-84400035445778899999--988


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCHHHHHHCC----CC-CEEEE--CCCCEEEEEECCC
Q ss_conf             34676432222221100000002455304----77-60330--2740899862641
Q gi|254780602|r  284 LNGPQDFVVNNRKIFEYRRDLCVAQLQGV----PG-IRYMI--PDGAFYLYPSCQD  332 (400)
Q Consensus       284 l~~~~~~~~~~~~~~~~~r~~~~~~L~~~----~g-~~~~~--p~g~~y~~~~~~~  332 (400)
                      ++.=+  -+++.+...+.-++|+.+|.++    |+ +.-.+  .+|||-.| |+++
T Consensus       367 ~~eI~--~~~L~~n~~~~Gd~Ly~GLe~L~~~YP~~~~nlRGKGrGTFiaw-D~p~  419 (469)
T TIGR00699       367 IQEIK--RKDLLNNVAAVGDYLYTGLEDLQKKYPEKVQNLRGKGRGTFIAW-DTPD  419 (469)
T ss_pred             HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCEEEC-CCCC
T ss_conf             87642--25778889987678899899999750134403446764215740-4988


Done!