HHsearch alignment for GI: 254780602 and conserved domain: pfam03841

Probab=98.85  E-value=1.4e-09  Score=78.34  Aligned_cols=263  Identities=19%  Similarity=0.150  Sum_probs=153.1

Q ss_pred             EEECCCCCCCCCCCHHHHHHHHHHHHCC-CCCCCCCCCCHHHHHH-HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             2665658974988999999999998388-7569987789899999-9998642101333322332334543333222222
Q gi|254780602|r   33 VLCLTAGEPDFDMPENVKYAVVRAMERG-ETKYTAVAGISPLREA-IVEKFRRDNDLHYTSDQIIVGTGAKHVIFNALMA  110 (400)
Q Consensus        33 ii~l~~G~p~~~~p~~i~~a~~~al~~~-~~~Y~~~~G~~~lR~a-ia~~~~~~~g~~~~~e~I~it~G~~~~l~~~~~~  110 (400)
T Consensus         8 vlHTnLGRa--~l~~~a~~a~~~~~~~y~nLE~dl~~g~RG~R~~~~~~ll~~lt----gaE~a~vVNnnAaAv~L~l~~   81 (367)
T pfam03841         8 VLHTNLGRA--LLSEEAVEAAKEAARHYSNLEYDLESGKRGSRDSHLEELLCELT----GAEDALVVNNNAAAVLLVLNT   81 (367)
T ss_pred             EECCCCCCC--CCCHHHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHHHHHH----CCCEEEEECCCHHHHHHHHHH
T ss_conf             653678777--89999999999986177203666741776635789999999863----986599987838999999998


Q ss_pred             CCCCCCCCCCCCC------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEECCCCCCCCCCCCC-
Q ss_conf             2332232222333------323222222222222222222222322210333100012212201211354210000123-
Q gi|254780602|r  111 TVNMGDEVLIPRP------YWVSYPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQ-  183 (400)
Q Consensus       111 ~~~~Gd~Vlv~~P------~y~~y~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~k~i~l~nP~NPTG~v~s~-  183 (400)
T Consensus        82 la-~g~evivSRGelVeiGgsfRiPdim~~sGa~LvEVGtTNr----T~l~DYe~AI~e~Ta~llkVH~SN~~i~GFt~~  156 (367)
T pfam03841        82 LA-QGKEVIISRGELVEIGGSFRIPDIMKQSGARLVEVGTTNR----THLKDYEQAINENTALLMKVHTSNYRIQGFTKE  156 (367)
T ss_pred             HH-CCCCEEEECCEEECCCCCCCCHHHHHHCCCEEEEECCCCC----CCHHHHHHHCCCCCEEEEEEECCCCEECCCCCC
T ss_conf             75-4890577555451238754408999965978998256688----898999987082461899994265122374677


Q ss_pred             CCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCC-----CCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf             333211122333332011101221100000122-----332221112333225741465443223445444221101226
Q gi|254780602|r  184 NRLRALADVLVRNPHVHIISDDIYEHIVYRNCQ-----FSNIVNVEPSLYERTLVVNGVSKAYAMTGLRIGYAAGALSLI  258 (400)
Q Consensus       184 ~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~-----~~s~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~v~~~~li  258 (400)
T Consensus       157 v~~~el~~l-a~~~~ip~i~DlGSG~l~-d~~~~gl~~Ep~v~~~l~--~GaDlV~FSGDKLLG--GPQAGII~Gkk~lI  230 (367)
T pfam03841       157 VSLAELVAL-GKEHGLPVYYDLGSGSLV-DLSQYGLPKEPTVQELLA--LGVDLVSFSGDKLLG--GPQAGIIVGKKELI  230 (367)
T ss_pred             CCHHHHHHH-HHHCCCCEEEECCCCCEE-CCCCCCCCCCCCHHHHHH--CCCCEEEEECCCCCC--CCCCCEEEECHHHH
T ss_conf             999999999-987699679975866311-220017999998999997--399889986764568--98532476459999


Q ss_pred             HHHHHHCCCCCCCCCCCCCCCCCCCCCC---CCC---------CCCCCCCCCCCCCCCHHHHHHCC
Q ss_conf             8753100122233222222222222346---764---------32222221100000002455304
Q gi|254780602|r  259 KSMIVLQGQQTSGACSIAQWAAVEALNG---PQD---------FVVNNRKIFEYRRDLCVAQLQGV  312 (400)
Q Consensus       259 ~~l~~~~~~~~~~~~~~~q~a~~~~l~~---~~~---------~~~~~~~~~~~~r~~~~~~L~~~  312 (400)
T Consensus       231 ~~ikknPL~RAlRvDKltLaaLeatL~~Yl~~~~~~~~IP~l~mL~~~~~~L~~rA~~l~~~l~~~  296 (367)
T pfam03841       231 ERLKKNPLKRALRVDKLTLAALEATLRLYLNPEKLYEKIPTLRLLTQPLKELRAKAERLQKLLKAR  296 (367)
T ss_pred             HHHHHCCHHHHHCCCHHHHHHHHHHHHHHHCCCCHHCCCHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_conf             974647444544458899999999999984900000116589986399999999999999997675