RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780602|ref|YP_003065015.1| aspartate aminotransferase
[Candidatus Liberibacter asiaticus str. psy62]
(400 letters)
>gnl|CDD|30785 COG0436, COG0436, Aspartate/tyrosine/aromatic aminotransferase
[Amino acid transport and metabolism].
Length = 393
Score = 356 bits (916), Expect = 4e-99
Identities = 164/395 (41%), Positives = 226/395 (57%), Gaps = 23/395 (5%)
Query: 15 ATLVAAQRVRDLRSKGIDVLCLTAGEPDFDMPENVKYAVVRAMERGETKYTAVAGISPLR 74
A L A+ +L+ K DV+ L+ GEPDF PE++ A + A+E G T YT AGI LR
Sbjct: 13 AVLAEAKAAAELKGK-EDVIDLSIGEPDFPTPEHIIEAAIEALEEGGTHYTPSAGIPELR 71
Query: 75 EAIVEKFRRDNDLHYTSDQ-IIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDMVA 133
EAI EK++R L ++ IIV GAK +F A +A +N GDEVLIP P + SY V
Sbjct: 72 EAIAEKYKRRYGLDVDPEEEIIVTAGAKEALFLAFLALLNPGDEVLIPDPGYPSYEAAVK 131
Query: 134 LCGGIPVFVDTQ-QDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALADV 192
L GG PV V +++ F+ E LE AITPKTK + LNSP+NP+G VYS+ L+A+ ++
Sbjct: 132 LAGGKPVPVPLDEEENGFKPDLEDLEAAITPKTKAIILNSPNNPTGAVYSKEELKAIVEL 191
Query: 193 LVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTGLRIGYAA 252
+ + IISD+IYE +VY + +I+ + +RT+ +N SK Y MTG RIG+
Sbjct: 192 AREH-DIIIISDEIYEELVYDGAEHPSILELAG-ARDRTITINSFSKTYGMTGWRIGWVV 249
Query: 253 GALS-LIKSMIVLQGQQTSGACSIAQWAAVEALNGPQ--DFVVNNRKIFEYRRDLCVAQL 309
G LI ++ L+ TS A + AQ+AA+ ALNGPQ + V R+ + RRDL V L
Sbjct: 250 GPPEELIAALRKLKSYLTSCAPTPAQYAAIAALNGPQSDEVVEEMREEYRERRDLLVEAL 309
Query: 310 QGVPGI-RYMIPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSF 368
+ G+ P+GAFYL+P +L+ +F LLE VAVV GS F
Sbjct: 310 NEIGGLSVVKPPEGAFYLFPKIPELL-----------DSEEFAKKLLEEAGVAVVPGSGF 358
Query: 369 GHGPS---IRISYAVSDAILEEACVRIKRFCHSLQ 400
G P +R+S A S+ LEEA R+ RF +
Sbjct: 359 GEPPGEGYVRLSLATSEETLEEALRRLARFLAEYR 393
>gnl|CDD|99734 cd00609, AAT_like, Aspartate aminotransferase family. This family
belongs to pyridoxal phosphate (PLP)-dependent aspartate
aminotransferase superfamily (fold I). Pyridoxal
phosphate combines with an alpha-amino acid to form a
compound called a Schiff base or aldimine intermediate,
which depending on the reaction, is the substrate in
four kinds of reactions (1) transamination (movement of
amino groups), (2) racemization (redistribution of
enantiomers), (3) decarboxylation (removing COOH
groups), and (4) various side-chain reactions depending
on the enzyme involved. Pyridoxal phosphate (PLP)
dependent enzymes were previously classified into alpha,
beta and gamma classes, based on the chemical
characteristics (carbon atom involved) of the reaction
they catalyzed. The availability of several structures
allowed a comprehensive analysis of the evolutionary
classification of PLP dependent enzymes, and it was
found that the functional classification did not always
agree with the evolutionary history of these enzymes.
The major groups in this CD corresponds to Aspartate
aminotransferase a, b and c, Tyrosine, Alanine,
Aromatic-amino-acid, Glutamine phenylpyruvate,
1-Aminocyclopropane-1-carboxylate synthase,
Histidinol-phosphate, gene products of malY and cobC,
Valine-pyruvate aminotransferase and Rhizopine
catabolism regulatory protein..
Length = 350
Score = 286 bits (734), Expect = 7e-78
Identities = 120/363 (33%), Positives = 180/363 (49%), Gaps = 19/363 (5%)
Query: 36 LTAGEPDFDMPENVKYAVVRAMER-GETKYTAVAGISPLREAIVEKFRRDNDLHYTSDQI 94
L+ GEPDF P V A+ A R G Y G+ LREAI E R + ++I
Sbjct: 3 LSIGEPDFPPPPEVLEALAAAALRAGLLGYYPDPGLPELREAIAEWLGRRGGVDVPPEEI 62
Query: 95 IVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNFQVSP 154
+V GA+ + L A +N GDEVL+P P + Y L G V V ++ F +
Sbjct: 63 VVTNGAQEALSLLLRALLNPGDEVLVPDPTYPGYEAAARLAGAEVVPVPLDEEGGFLLDL 122
Query: 155 EKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRN 214
E LE A TPKTK L+LN+P+NP+G V S+ L LA+ L + + IISD+ Y +VY
Sbjct: 123 ELLEAAKTPKTKLLYLNNPNNPTGAVLSEEELEELAE-LAKKHGILIISDEAYAELVYDG 181
Query: 215 CQFSNIVNVEPSLYERTLVVNGVSKAYAMTGLRIGYAAG-ALSLIKSMIVLQGQQTSGAC 273
+ ++ YER +V+ SK + + GLRIGY L++ + L TSG
Sbjct: 182 EPPPALALLD--AYERVIVLRSFSKTFGLPGLRIGYLIAPPEELLERLKKLLPYTTSGPS 239
Query: 274 SIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQGVPGIRYMIPDGAFYLYPSCQDL 333
+++Q AA AL+ ++ + R+ + RRD + L+ + + + P G F+L+ +
Sbjct: 240 TLSQAAAAAALDDGEEHLEELRERYRRRRDALLEALKELGPLVVVKPSGGFFLWLDLPEG 299
Query: 334 IGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGHGPS--IRISYAVSDAILEEACVR 391
D +F+ LL V V GS+FG G +R+S+A + LEEA R
Sbjct: 300 ------------DDEEFLERLLLEAGVVVRPGSAFGEGGEGFVRLSFATPEEELEEALER 347
Query: 392 IKR 394
+
Sbjct: 348 LAE 350
>gnl|CDD|35478 KOG0257, KOG0257, KOG0257, Kynurenine aminotransferase, glutamine
transaminase K [Amino acid transport and metabolism].
Length = 420
Score = 233 bits (596), Expect = 5e-62
Identities = 106/388 (27%), Positives = 181/388 (46%), Gaps = 21/388 (5%)
Query: 9 RRVQPSATLVAAQRVRDLRSKGIDVLCLTAGEPDFDMPENVKYAVVRAM-ERGETKYTAV 67
R + S V + + L ++ L G PDF P+ V A A E +YT
Sbjct: 10 RNLSTSKPYVWTE-INRLAAEHKVPNPLGQGFPDFPPPKFVTEAAKNAAKEPSTNQYTRG 68
Query: 68 AGISPLREAIVEKFRRD-NDLHYTSDQIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWV 126
G+ LR+A+ + + L D+++V GA I +AL+ +N GDEV++ P++
Sbjct: 69 YGLPQLRKALAKAYSEFYGGLLDPDDEVLVTAGANEAISSALLGLLNPGDEVIVFEPFFD 128
Query: 127 SYPDMVALCGGIPVFVDTQQD------DNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVV 180
Y V + GG PVFV + ++ + PE+LE IT KTK + LN+P NP+G V
Sbjct: 129 CYIPQVVMAGGTPVFVPLKPKEGNVSSSDWTLDPEELESKITEKTKAIILNTPHNPTGKV 188
Query: 181 YSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKA 240
+S+ L +A++ ++ + +ISD++YE +VY + I + P +YERT+ V K
Sbjct: 189 FSREELERIAELCKKHG-LLVISDEVYEWLVYDGNKHIRIAS-LPGMYERTITVGSFGKT 246
Query: 241 YAMTGLRIGYAAGALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGPQDFVVNNRKIFEY 300
+ +TG R+G+A G L ++ + + Q A+ A + F
Sbjct: 247 FGVTGWRLGWAIGPKHLYSALFPVHQNFVFTCPTPIQEASAAAFALELACLQPGGSYFIT 306
Query: 301 --------RRDLCVAQLQGVPGIRYMIPDGAFYLYPSCQDLIGKKSPSGDVIRT-DLDFV 351
+RD+ L+ + G++ P+GA+YL+ + + D FV
Sbjct: 307 ELVKEYKEKRDILAKALEEL-GLKVTGPEGAYYLWADFSLAKSWPFFEEILEKPDDFKFV 365
Query: 352 NGLLEIEKVAVVQGSSFGHGPSIRISYA 379
L++ V V+ S+FG I+++
Sbjct: 366 RWLIKEGGVVVIPPSAFGSREHIKVAER 393
>gnl|CDD|143923 pfam00155, Aminotran_1_2, Aminotransferase class I and II.
Length = 351
Score = 230 bits (588), Expect = 7e-61
Identities = 95/369 (25%), Positives = 147/369 (39%), Gaps = 25/369 (6%)
Query: 31 IDVLCLTAGEPDFDMPENVKYAVVRAME-RGETKYTAVAGISPLREAIVEKFRRDNDLHY 89
D + L + E D V A A+ Y G+ LREA+ + R L
Sbjct: 1 TDKINLGSNEYLGDTLPAVAKAEKDALAGGTRNLYGPTDGLPELREALAKFLGRSPVLKL 60
Query: 90 T-SDQIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDMVALCGGIPVFVDTQQDD 148
++ G+GA I + N GD +L+P P + SY + L GG V +
Sbjct: 61 DREAAVVFGSGAGANIEALIFLLANPGDAILVPAPTYASYIRIARLAGGEVVRYPLYDSN 120
Query: 149 NFQVSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYE 208
+F + + LE A+ K K + SP NP+G V L L D+ + ++ ++ D+ Y
Sbjct: 121 DFHLDFDALEAALKEKPKVVLHESPHNPTGTVAPLEELEKLLDLAKEH-NILLLVDEAYA 179
Query: 209 HIVYRNCQF-SNIVNVEPSLYERTLVVNGVSKAYAMTGLRIGYAAGALSLIKSMIVLQGQ 267
V+ + + + LVV SKA+ + G R+GY G ++I + L
Sbjct: 180 GFVFGSPDAVATRALLAEGPN--LLVVGSFSKAFGLAGWRVGYILGNAAVISQLRKLARP 237
Query: 268 QTSGACSIAQWAAVEALNGPQ---DFVVNNRKIFEYRRDLCVAQLQGVPGIRYMIPDGAF 324
S + Q AA AL+ P + R+ + RRD L+ G+ + F
Sbjct: 238 FYS--STHLQAAAAAALSDPLLVASELEEMRQRIKERRDYLRDGLEAA-GLSVLPSQAGF 294
Query: 325 YLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGHGPSIRISYA-VSDA 383
+L P T + LLE V V GSS G +RI+ A ++
Sbjct: 295 FLLTGL-------DPE-----TAKELAQVLLEEVGVYVTPGSSPGVPGWLRITVAGGTEE 342
Query: 384 ILEEACVRI 392
LEE I
Sbjct: 343 ELEELLEAI 351
>gnl|CDD|35480 KOG0259, KOG0259, KOG0259, Tyrosine aminotransferase [Amino acid
transport and metabolism].
Length = 447
Score = 156 bits (396), Expect = 1e-38
Identities = 103/388 (26%), Positives = 177/388 (45%), Gaps = 35/388 (9%)
Query: 29 KGIDVLCLTAGEPD----FDMPENVKYAVVRAMERGE-TKYTAVAGISPLREAIVEKFRR 83
K +L L G+P F + + AVV A+ G+ Y GI P R A+ E R
Sbjct: 59 KKKPILPLGHGDPSVYPCFRTSQEAEQAVVDALRSGKGNGYAPSVGILPARRAVAEYLNR 118
Query: 84 DNDLHYTSDQIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDMVALCGGIPVFVD 143
D T+D +++ +G I A+ + N G +L+PRP + Y G + D
Sbjct: 119 DLPNKLTADDVVLTSGCSQAIELAISSLANPGANILLPRPGFPLYDTRAIYSGLEVRYYD 178
Query: 144 TQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIIS 203
+ ++++ + +E T + + +P+NP G VYS++ L+ +A+ + + +I+
Sbjct: 179 LLPEKDWEIDLDGVEALADENTVAIVVINPNNPCGNVYSEDHLKKIAE-TAKKLGIMVIA 237
Query: 204 DDIYEHIVYRNC------QFSNIVNVEPSLYERTLVVNGVSKAYAMTGLRIGYAA--GAL 255
D++Y H V+ + +FS+IV V + + G+SK + + G R+G+ A
Sbjct: 238 DEVYGHTVFGDKPFVPMGKFSSIVPV--------ITLGGISKRWIVPGWRLGWIALHDPR 289
Query: 256 SLIKSMIVLQG-----QQTSGACSIAQWAAVEAL-NGPQDFVVNNRKIFEYRRDLCVAQL 309
+ + V+QG G +I Q A + L P++F + DLC ++L
Sbjct: 290 GVFRDTKVVQGIKNFLDIIPGPATIIQGALPDILEKTPEEFFDKKLSFLKSNADLCYSRL 349
Query: 310 QGVPGIR-YMIPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSF 368
+ +P + + P+G YL ++ I D+DF L E V + G +F
Sbjct: 350 KDIPCLTCPVKPEGCMYL------MVKLNLSLFPDIEDDVDFCQKLAREESVICLPGQAF 403
Query: 369 GHGPSIRISYAVSDAILEEACVRIKRFC 396
G +RI V + +LEEA RIK FC
Sbjct: 404 GLKNWLRIVITVEEEMLEEAFSRIKEFC 431
>gnl|CDD|31362 COG1168, MalY, Bifunctional PLP-dependent enzyme with
beta-cystathionase and maltose regulon repressor
activities [Amino acid transport and metabolism].
Length = 388
Score = 125 bits (316), Expect = 2e-29
Identities = 89/370 (24%), Positives = 165/370 (44%), Gaps = 20/370 (5%)
Query: 32 DVLCLTAGEPDFDMPENVKYAVVRAMERGETKYTAVAGISPLREAIVEKFRRDNDLHYTS 91
DVL + + DF P + A+ ++ G Y + L AI F++ +
Sbjct: 26 DVLPMWVADMDFPTPPEIIEALRERVDHGVFGYPYGSD--ELYAAIAHWFKQRHQWEIKP 83
Query: 92 DQIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDMVALCGGIPVFVD-TQQDDNF 150
+ I+ G I A+ A GD V+I P + + + + L G + + D +
Sbjct: 84 EWIVFVPGVVPGISLAIRALTKPGDGVVIQTPVYPPFYNAIKLNGRKVIENPLVEDDGRY 143
Query: 151 QVSPEKLEQAI-TPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEH 209
++ + LE+A + K L +P NP+G V+++ LR +A++ +R+ V +ISD+I+
Sbjct: 144 EIDFDALEKAFVDERVKLFILCNPHNPTGRVWTKEELRKIAELCLRH-GVRVISDEIHAD 202
Query: 210 IVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTGLRIGYA--AGALSLIKSMIVLQGQ 267
+V + ++ + ++ + SK + + GL+ Y + K + L+
Sbjct: 203 LVLGGHKHIPFASLSERFADNSITLTSASKTFNLAGLKCAYIIISNRELRAKFLKRLKRN 262
Query: 268 QTSGACSIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQL-QGVPGIRYMIPDGAFYL 326
G ++ A A N + ++ + + RD L + +PG++ P G +
Sbjct: 263 GLHGPSALGIIATEAAYNQGEPWLDELLEYLKDNRDYVADFLNKHLPGVKVTEPQGTYLA 322
Query: 327 YPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGHGPS--IRISYAVSDAI 384
+ C++L D + LLE KVA+ GS+FG S +R+++A AI
Sbjct: 323 WLDCREL----------GLDDSELAEFLLEEAKVALSPGSTFGEEGSGFVRLNFACPRAI 372
Query: 385 LEEACVRIKR 394
LEEA R+KR
Sbjct: 373 LEEALERLKR 382
>gnl|CDD|31361 COG1167, ARO8, Transcriptional regulators containing a DNA-binding
HTH domain and an aminotransferase domain (MocR family)
and their eukaryotic orthologs [Transcription / Amino
acid transport and metabolism].
Length = 459
Score = 120 bits (301), Expect = 1e-27
Identities = 98/425 (23%), Positives = 164/425 (38%), Gaps = 53/425 (12%)
Query: 3 FISNILRRVQPSATLV----AAQRVRDLRSKGIDVLCLTAGEPDFDMP--ENVKYAVVRA 56
+I + PS V +L V+ G PD + E ++ A+ R
Sbjct: 57 YIESRPGSAPPSGRPVRLELLKPSDPELLEDDPSVIDFAGGLPDPSLFPLEALRRALARV 116
Query: 57 M----ERGETKYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFNALMATV 112
+ +Y AG+ LREAI + +QI++ +GA+ + L +
Sbjct: 117 LRNYGASLALQYGPTAGLPELREAIAAYLLARRGISCEPEQIVITSGAQQALDLLLRLLL 176
Query: 113 NMGDEVLIPRPYWVSYPDMVAL-------CGGIPVFVDTQQDDNFQVSPEKLEQAI-TPK 164
+ GD VL+ P +YP + +PV D + PE LE+A+ K
Sbjct: 177 DPGDTVLVEDP---TYPGALQALEALGARVIPVPV-------DEDGIDPEALEEALAQWK 226
Query: 165 TKWLFLN-SPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNV 223
K +++ + NP+GV S R +AL L V II DD Y + Y + +
Sbjct: 227 PKAVYVTPTFQNPTGVTMSLERRKALLA-LAEKYDVLIIEDDYYGELRYDGPPPPPLKAL 285
Query: 224 EPSLYERTLVVNGVSKAYAMTGLRIGYAAGALSLIKSMIVLQGQQTSGACSIAQWAAVEA 283
+ R + + SK A GLR+GY LI+ ++ L+ G S++Q A
Sbjct: 286 DAP--GRVIYLGSFSKTLA-PGLRLGYVVAPPELIEKLLRLKQAADLGPSSLSQAALAAF 342
Query: 284 L-NGPQDFVVNN-RKIFEYRRDLCVAQLQGV--PGIRYMIPDGAFYLYPSCQDLIGKKSP 339
L +G D + R+ + RRD + L + P+G +L+ + I
Sbjct: 343 LLSGHYDRHLRRLRREYARRRDALLEALAEYLPELATWTRPEGGLFLWLELPEGI----- 397
Query: 340 SGDVIRTDLDFVNGLLEIEKVAVVQGSSFGHGPS----IRISYA-VSDAILEEACVRIKR 394
+ + LE V GS+F +R+S++ S+ +EE R+
Sbjct: 398 ------DARELLAAALEKGVVVTPLGSAFSADGDPRNGLRLSFSSPSEEEIEEGIKRLAA 451
Query: 395 FCHSL 399
Sbjct: 452 LLREA 456
>gnl|CDD|30428 COG0079, HisC, Histidinol-phosphate/aromatic aminotransferase and
cobyric acid decarboxylase [Amino acid transport and
metabolism].
Length = 356
Score = 101 bits (253), Expect = 3e-22
Identities = 88/348 (25%), Positives = 151/348 (43%), Gaps = 38/348 (10%)
Query: 32 DVLCLTAGEPDFDMPENVKYAVVRAMERGETKYTAVAGISPLREAIVEKFRRDNDLHYTS 91
++ L++ E + P V A+ A+++ +Y LR A+ E +
Sbjct: 23 GIIKLSSNENPYGPPPKVIEAIRAALDKL-NRYPDPDYRE-LRAALAEYYGVV-----DP 75
Query: 92 DQIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNFQ 151
+ ++VG G+ +I + A V GD VLIP P + Y L G V V F+
Sbjct: 76 ENVLVGNGSDELIELLVRAFVEPGDTVLIPEPTFSMYEIAAQLAGAEVVKVPL---KEFR 132
Query: 152 VSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIV 211
+ + + AI KTK +FL +P+NP+G + + LRAL + L ++ D+ Y
Sbjct: 133 LDLDAILAAIRDKTKLVFLCNPNNPTGTLLPREELRALLEAL--PEGGLVVIDEAY---- 186
Query: 212 YRNCQFSNIVNVEPSLYERTLVV-NGVSKAYAMTGLRIGYAAGALSLIKSMIVLQGQQTS 270
+FS ++E Y L+V SKA+ + GLR+GYA LI ++ ++
Sbjct: 187 ---IEFSPESSLELLKYPPNLIVLRTFSKAFGLAGLRVGYAIANPELIAALNKVRPPFN- 242
Query: 271 GACSIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQGVPGIRYMIPDGAFYLYPSC 330
S A AA+ AL D++ + + R+ A L+ + G+ + P A ++
Sbjct: 243 -VSSPALAAAIAALR-DADYLEESVERIREERERLYAALKAL-GLFGVFPSQANFV---- 295
Query: 331 QDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGHGPS-IRIS 377
L+ V + + L + + V SS G P +RI+
Sbjct: 296 --LV-------RVPDAEAAALAEALLKKGILVRDCSSVGLLPGYLRIT 334
>gnl|CDD|35477 KOG0256, KOG0256, KOG0256, 1-aminocyclopropane-1-carboxylate
synthase, and related proteins [Signal transduction
mechanisms].
Length = 471
Score = 89.2 bits (221), Expect = 2e-18
Identities = 84/352 (23%), Positives = 155/352 (44%), Gaps = 40/352 (11%)
Query: 69 GISPLREAIVE--KFRRDNDLHYTSDQIIVGTGAKHVIFNALMATV-NMGDEVLIPRPYW 125
G+ R+A+ E + R N + + ++++V GA LM + + GD L+P PY+
Sbjct: 122 GLPSFRQAVAEFMERARGNRVKFDPERVVVTNGATSA-NETLMFCLADPGDAFLVPTPYY 180
Query: 126 VSYPDMVALCGG---IPVFVDTQQDDNFQVSPEKLEQAITP------KTKWLFLNSPSNP 176
+ + G +PV + + FQ++ E LE A+ K K + + +PSNP
Sbjct: 181 PGFDRDLRWRTGVEIVPVHCSSS--NGFQITVEALEAALNQARKLGLKVKGVLITNPSNP 238
Query: 177 SGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLY---ERTLV 233
G S L +L + R ++H+ISD+IY V+ +F +++ V + +R +
Sbjct: 239 LGTTLSPEELISLLNFASRK-NIHVISDEIYAGSVFDKSEFRSVLEVRKDPHLDPDRVHI 297
Query: 234 VNGVSKAYAMTGLRIG----YAAGALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGP-- 287
V +SK + + G R+G +S M S Q+ L+
Sbjct: 298 VYSLSKDFGLPGFRVGVIYSNNEDVVSAATKM-----SSFGLVSSQTQYLLASLLSDEEF 352
Query: 288 -QDFVVNNRKIFEYRRDLCVAQLQGVPGIRYMIPDGAFYLYPSCQDLIGKKSPSGDVIRT 346
++++ N K R V L+ + GI + + + + + L+ + G
Sbjct: 353 TREYLRENNKRLRIRHRYIVEGLKAL-GIPCLKSNAGLFCWVDLRKLLTSLTFEG----- 406
Query: 347 DLDFVNGLLEIEKVAVVQGSSFG-HGPS-IRISYA-VSDAILEEACVRIKRF 395
+L+ +L+ K+ + GSS H P R+ +A +S+ LE A R+K+F
Sbjct: 407 ELELWERILDNVKLNLSPGSSCHCHEPGWFRVCFANMSEETLEVAMRRLKQF 458
>gnl|CDD|35853 KOG0634, KOG0634, KOG0634, Aromatic amino acid aminotransferase and
related proteins [Amino acid transport and metabolism].
Length = 472
Score = 70.4 bits (172), Expect = 8e-13
Identities = 80/388 (20%), Positives = 134/388 (34%), Gaps = 67/388 (17%)
Query: 63 KYTAVAGISPLREAIVEKFR-RDNDLHYTSDQIIVGTGAKHVIFNALMATVNMGDEVLIP 121
+Y +GI L I + R + Y + II+ G +F L +N GD VLI
Sbjct: 95 QYGQSSGIPELLLFIKDHNRPTIHAPPYKNWDIIITNGNTDGLFKVLRTLINRGDHVLIE 154
Query: 122 RPYWVSYPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQAITPKTKWLF--LNSP------ 173
+YP + + V + + D + PE LE+ + W P
Sbjct: 155 EY---TYPSALQSMEALGVKIIPVKMDQDGIDPESLEE---ILSNWKPGSYKKPKPHVLY 208
Query: 174 -----SNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNC--------QFSNI 220
NP+G S R + + L R I+ DD Y + +
Sbjct: 209 TIPTGQNPTGNTLSLERRKKIYQ-LARKYDFLIVEDDPYYFLQMNTYNPSLELESPAHSS 267
Query: 221 VNVEPSLYE---------RTLVVNGVSKAYAMTGLRIGYAAGALSLIKSMIVLQGQQTSG 271
SL R + + SK A GLR+G+ G +K ++ L TSG
Sbjct: 268 SMFLKSLVPSFLSLDTDGRVIRNDSFSKIIA-PGLRLGWITGNSLFLKRILDLAEVATSG 326
Query: 272 ACSIAQ---------WAAVEALNGPQDFVVNNRKIFEYRRDLCVAQL-QGVPG--IRYMI 319
+Q W G ++ + R + RR+ ++ L + +P Y
Sbjct: 327 PSGFSQGIVYAMLKRWGQ----EGFLRWIQHLRSSYTERRNALLSALDKYLPKSVCEYHP 382
Query: 320 PDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGHGPS------ 373
P +++ + S + I + + V +V GS F P
Sbjct: 383 PKAGMFIWVEIPYINFDTKKSINQIE---EIIFIKAVKNGVKLVCGSWFMVDPESSWSKI 439
Query: 374 -IRISYAVSDAILEEACVRIKRFCHSLQ 400
R+S A ++ E+ I+RF ++
Sbjct: 440 FFRLSIAFAE--PEKLDEGIERFGSVIK 465
>gnl|CDD|99740 cd00616, AHBA_syn, 3-amino-5-hydroxybenzoic acid synthase family
(AHBA_syn). AHBA_syn family belongs to pyridoxal
phosphate (PLP)-dependent aspartate aminotransferase
superfamily (fold I). The members of this CD are
involved in various biosynthetic pathways for secondary
metabolites. Some well studied proteins in this CD are
AHBA_synthase, protein product of pleiotropic regulatory
gene degT, Arnb aminotransferase and pilin
glycosylation protein. The prototype of this family, the
AHBA_synthase, is a dimeric PLP dependent enzyme.
AHBA_syn is the terminal enzyme of
3-amino-5-hydroxybenzoic acid (AHBA) formation which is
involved in the biosynthesis of ansamycin antibiotics,
including rifamycin B. Some members of this CD are
involved in 4-amino-6-deoxy-monosaccharide D-perosamine
synthesis. Perosamine is an important element in the
glycosylation of several cell products, such as
antibiotics and lipopolysaccharides of gram-positive and
gram-negative bacteria. The pilin glycosylation protein
encoded by gene pglA, is a galactosyltransferase
involved in pilin glycosylation. Additionally, this CD
consists of ArnB (PmrH) aminotransferase, a
4-amino-4-deoxy-L-arabinose lipopolysaccharide-modifying
enzyme. This CD also consists of several predicted
pyridoxal phosphate-dependent enzymes apparently
involved in regulation of cell wall biogenesis. The
catalytic lysine which is present in all characterized
PLP dependent enzymes is replaced by histidine in some
members of this CD..
Length = 352
Score = 64.1 bits (157), Expect = 7e-11
Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 13/80 (16%)
Query: 98 TGAKHVI-FN--------ALMAT-VNMGDEVLIPRPY-WVSYPDMVALCGGIPVFVDTQQ 146
G K+ + + AL A + GDEV++P + +V+ + + L G PVFVD
Sbjct: 31 LGVKYAVAVSSGTAALHLALRALGIGPGDEVIVP-SFTFVATANAILLLGATPVFVDIDP 89
Query: 147 DDNFQVSPEKLEQAITPKTK 166
D + + PE +E AITP+TK
Sbjct: 90 DT-YNIDPELIEAAITPRTK 108
>gnl|CDD|30748 COG0399, WecE, Predicted pyridoxal phosphate-dependent enzyme
apparently involved in regulation of cell wall
biogenesis [Cell envelope biogenesis, outer membrane].
Length = 374
Score = 63.3 bits (154), Expect = 1e-10
Identities = 36/108 (33%), Positives = 54/108 (50%), Gaps = 10/108 (9%)
Query: 97 GTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNFQVSPEK 156
GT A H+ AL + GDEV++P +V+ + V L G PVFVD D + P+
Sbjct: 58 GTAALHLALLAL--AIGPGDEVIVPSFTFVATANAVLLVGAKPVFVDIDPDT-LNIDPDL 114
Query: 157 LEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISD 204
+E AITP+TK + P + +G + + ALA + +I D
Sbjct: 115 IEAAITPRTKAII---PVHLAGQPCDMDAIMALAK----RHGLPVIED 155
>gnl|CDD|144581 pfam01041, DegT_DnrJ_EryC1, DegT/DnrJ/EryC1/StrS aminotransferase
family. The members of this family are probably all
pyridoxal-phosphate-dependent aminotransferase enzymes
with a variety of molecular functions. The family
includes StsA, StsC, and StsS. The aminotransferase
activity was demonstrated for purified StsC protein as
the L-glutamine:scyllo-inosose aminotransferase
EC:2.6.1.50, which catalyses the first amino transfer in
the biosynthesis of the streptidine subunit of
streptomycin.
Length = 363
Score = 63.0 bits (154), Expect = 1e-10
Identities = 29/71 (40%), Positives = 40/71 (56%), Gaps = 5/71 (7%)
Query: 97 GTGAKHVIFNALMAT-VNMGDEVLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNFQVSPE 155
GT A H+ AL A + GDEV++P +V+ + V G PVFVD D + + P
Sbjct: 49 GTAALHL---ALRALGIGPGDEVIVPSFTFVATANAVLYLGAKPVFVDI-DPDTYNIDPA 104
Query: 156 KLEQAITPKTK 166
+E AITP+TK
Sbjct: 105 AIEAAITPRTK 115
>gnl|CDD|35852 KOG0633, KOG0633, KOG0633, Histidinol phosphate aminotransferase
[Amino acid transport and metabolism].
Length = 375
Score = 55.8 bits (134), Expect = 2e-08
Identities = 68/292 (23%), Positives = 123/292 (42%), Gaps = 35/292 (11%)
Query: 30 GIDVLCLTAGE-PDFDMPENVKYAVVRAMERGETKYTAVAGISPLREAIVEKFRRDNDLH 88
G D++ L A E P + PE +++ V R + A+A PL
Sbjct: 40 GRDIVKLDANENPRYPDPEQMEFKYVYPDPRNKRLSDALAQDKPL--------------- 84
Query: 89 YTSDQIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDMVALCGGIPVFVDTQQDD 148
TSD I VG G+ +I + + G E ++ P S + A V V +
Sbjct: 85 -TSDNICVGVGSDELIDLIIRCVCDPGKEKILDCPPTYSMYVVDAAINDAEV-VKVPLNP 142
Query: 149 NFQVSPEKLEQAIT--PKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDI 206
+F ++ + + + + K K +FL SP NP+G + ++ + +L + ++ D+
Sbjct: 143 DFSLNVDAIAEVLELDSKIKCIFLTSPGNPTGSIIKEDDIL---KILEMPDNGLVVVDEA 199
Query: 207 YEHIVYRNCQFSNIVNVEPSL--YERTLVVNGVSKAYAMTGLRIGYAAGALSLIKSMIVL 264
Y FS + + + Y +V+ +SK++ + G+R+GY A LS+ + +
Sbjct: 200 Y-------IDFSGVESRMKLVKKYPNLIVLQTLSKSFGLAGIRVGYGAFPLSIAEILNRA 252
Query: 265 -QGQQTSGACSIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQGVPGI 315
S A S+A AA+ NG + + R R+ +L VP +
Sbjct: 253 KAPYNISVAGSVAALAALSDSNG--KKMEDVRDAIVRERERLFKELTEVPFL 302
>gnl|CDD|35479 KOG0258, KOG0258, KOG0258, Alanine aminotransferase [Amino acid
transport and metabolism].
Length = 475
Score = 54.9 bits (132), Expect = 4e-08
Identities = 81/369 (21%), Positives = 137/369 (37%), Gaps = 51/369 (13%)
Query: 64 YTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFNALMATVN-MGDEVLIPR 122
Y+ G+ +R+ + E R + + + I + TGA I + L + VLIP
Sbjct: 109 YSDSQGVPGVRKHVAEFIERRDGIPADPEDIFLTTGASPAIRSILSLLIAGKKTGVLIPI 168
Query: 123 PYWVSYPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQA-------ITPKTKWLFLNSPSN 175
P + Y ++L GG V ++ N+ + +LE++ I P+ L + +P N
Sbjct: 169 PQYPLYSATISLLGGTQVPYYLDEESNWSLDVAELERSVDEARKGINPRA--LVVINPGN 226
Query: 176 PSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRN-CQFSNIVNVEPSLYE----- 229
P+G V S+ + + + +++D++Y+ VY +F + V +
Sbjct: 227 PTGQVLSEENIEGIICFAAEE-GLVLLADEVYQDNVYTTGSKFHSFKKVLHEMGNPYPDN 285
Query: 230 -RTLVVNGVSKAYAM-TGLRIGY-------AAGALSLIKSMIVLQGQQTSGACSIAQWAA 280
+ VSK Y G R GY + K + Q SG
Sbjct: 286 VSLASFHSVSKGYMGECGQRGGYMESLNRDPRVKQQIKKLASIKLCPQVSGQ------KL 339
Query: 281 VEALNGPQDFVVNNRKIFEYRRDLCVAQLQ-----------GVPGIRYMIPDGAFYLYPS 329
V+ + P + +F +D ++ L+ + GI GA YL+P
Sbjct: 340 VDLVVNPPKPGDPSYDLFSSEKDGILSSLRSRAKLTEDAFNSLEGISCNPVQGAMYLFPQ 399
Query: 330 C---QDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGHGPSIRISYAVSDAILE 386
I G I D + LLE + VV GS FG +Y IL
Sbjct: 400 ISLPPKAIEAAKALG--IAPDEFYCLKLLEATGICVVPGSGFGQKEG---TYHFRTTILP 454
Query: 387 EACVRIKRF 395
I++F
Sbjct: 455 PGLEIIEKF 463
>gnl|CDD|33757 COG3977, COG3977, Alanine-alpha-ketoisovalerate (or
valine-pyruvate) aminotransferase [Amino acid transport
and metabolism].
Length = 417
Score = 53.0 bits (127), Expect = 1e-07
Identities = 75/358 (20%), Positives = 140/358 (39%), Gaps = 47/358 (13%)
Query: 62 TKYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHV---IFNALMATVNMGDE- 117
Y G + L +A+ + RR+ + T+ I + G++ +FN + G E
Sbjct: 68 CNYDGPQGKAVLIDALAKMLRREYGWNITAQNIALTNGSQSAFFYLFNLFAGRRSDGTEK 127
Query: 118 -VLIP-RPYWVSYPDMVALCGGIPVF----VDTQQDDNFQVSPEKLEQAITPKTKWLFLN 171
+L+P P ++ Y D L + V ++ F+ + I T + ++
Sbjct: 128 KILLPLAPEYIGYAD-AGLEEDLFVSAKPNIELLPAGQFKYHVDFEHLHIGESTGAICVS 186
Query: 172 SPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIV--NVEPSLYE 229
P+NP+G V + L L D L R + +I D+ Y F I+ + P E
Sbjct: 187 RPTNPTGNVLTDEELAKL-DALARQHGIPLIIDNAY------GVPFPGIIFSDATPLWNE 239
Query: 230 RTLVVNGVSKAYAMTGLRIGYAAGALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGPQD 289
++ +SK + G R G +I+++ + G + + A E +
Sbjct: 240 NIILCMSLSKL-GLPGSRCGIIIANEKVIQAITNMNGIISLAPGRMGPAIAAEMIESGDL 298
Query: 290 FVVNNRKI--FEYRR-DLCVAQLQG-VPGIRYMI--PDGAFYLYPSCQDLIGKKSPSGDV 343
++ + I F R +A L+ +P R +I P+GA +L+ +DL P
Sbjct: 299 LRLSEQVIRPFYRNRVQTTIAILRRYLPEYRCLIHKPEGAIFLWLWFKDL-----P---- 349
Query: 344 IRTDLDFVNGLLEIEKVAVVQGSSFGHG---------PSIRISYAVSDAILEEACVRI 392
I T+ + L+ V +V G F G +R++Y +E+ +
Sbjct: 350 ITTEELY--QRLKARGVLMVPGHYFFPGLDKEWPHTHQCMRMNYVPEPEKIEKGVAIL 405
>gnl|CDD|144590 pfam01053, Cys_Met_Meta_PP, Cys/Met metabolism PLP-dependent
enzyme. This family includes enzymes involved in
cysteine and methionine metabolism. The following are
members: Cystathionine gamma-lyase, Cystathionine
gamma-synthase, Cystathionine beta-lyase, Methionine
gamma-lyase, OAH/OAS sulfhydrylase, O-succinylhomoserine
sulfhydrylase All of these members participate is
slightly different reactions. All these enzymes use PLP
(pyridoxal-5'-phosphate) as a cofactor.
Length = 381
Score = 47.2 bits (113), Expect = 8e-06
Identities = 32/88 (36%), Positives = 40/88 (45%), Gaps = 22/88 (25%)
Query: 97 GTGAKHVIFNALMATVNMGDEVLIPRP-YWVSYPDMVALC------GGIPV-FVDTQQDD 148
G A IF AL+A + GD V+ Y +Y L GI V FVD D
Sbjct: 76 GMAA---IFAALLALLKAGDHVVATDDLYGGTY----RLFEKVLPRFGIEVTFVDP--SD 126
Query: 149 NFQVSPEKLEQAITPKTKWLFLNSPSNP 176
+ LE AI P TK +FL +P+NP
Sbjct: 127 -----LDALEAAIKPNTKAVFLETPTNP 149
>gnl|CDD|99738 cd00614, CGS_like, CGS_like: Cystathionine gamma-synthase is a PLP
dependent enzyme and catalyzes the committed step of
methionine biosynthesis. This pathway is unique to
microorganisms and plants, rendering the enzyme an
attractive target for the development of antimicrobials
and herbicides. This subgroup also includes
cystathionine gamma-lyases (CGL), O-acetylhomoserine
sulfhydrylases and O-acetylhomoserine thiol lyases.
CGL's are very similar to CGS's. Members of this group
are widely distributed among all three forms of life..
Length = 369
Score = 43.0 bits (102), Expect = 2e-04
Identities = 32/100 (32%), Positives = 48/100 (48%), Gaps = 17/100 (17%)
Query: 97 GTGAKHVIFNALMATVNMGDEVLIPRPYW---VSYPDMVALCGGIPV-FVDTQQDDNFQV 152
G A I L+A + GD V+ + + + GI V FVD DD
Sbjct: 64 GMAA---ISTVLLALLKAGDHVVASDDLYGGTYRLFERLLPKLGIEVTFVDP--DD---- 114
Query: 153 SPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALADV 192
PE LE AI P+TK +++ SP+NP+ V + A+A++
Sbjct: 115 -PEALEAAIKPETKLVYVESPTNPTLKVVD---IEAIAEL 150
>gnl|CDD|30971 COG0626, MetC, Cystathionine beta-lyases/cystathionine
gamma-synthases [Amino acid transport and metabolism].
Length = 396
Score = 41.0 bits (96), Expect = 6e-04
Identities = 27/92 (29%), Positives = 38/92 (41%), Gaps = 10/92 (10%)
Query: 104 IFNALMATVNMGDEVLIPRPYWVS---YPDMVALCGGIPV-FVDTQQDDNFQVSPEKLEQ 159
I AL+A + GD VL+P + + + G+ V FVD D+
Sbjct: 91 ISTALLALLKAGDHVLLPDDLYGGTYRLFEKILQKFGVEVTFVDPGDDEAL------EAA 144
Query: 160 AITPKTKWLFLNSPSNPSGVVYSQNRLRALAD 191
P TK +FL +PSNP V + LA
Sbjct: 145 IKEPNTKLVFLETPSNPLLEVPDIPAIARLAK 176
>gnl|CDD|99739 cd00615, Orn_deC_like, Ornithine decarboxylase family. This family
belongs to pyridoxal phosphate (PLP)-dependent aspartate
aminotransferase superfamily (fold I). The major groups
in this CD corresponds to ornithine decarboxylase (ODC),
arginine decarboxylase (ADC) and lysine decarboxylase
(LDC). ODC is a dodecamer composed of six homodimers and
catalyzes the decarboxylation of tryptophan. ADC
catalyzes the decarboxylation of arginine and LDC
catalyzes the decarboxylation of lysine. Members of this
family are widely found in all three forms of life..
Length = 294
Score = 40.7 bits (96), Expect = 8e-04
Identities = 31/132 (23%), Positives = 54/132 (40%), Gaps = 23/132 (17%)
Query: 99 GAKHVIFN----------ALMATVNMGDEVLIPRPYWVSYPDMVALCGGIPVFVDTQQDD 148
GAKH F ++A GD++LI R S + + L G +PV++ +++
Sbjct: 73 GAKHTFFLVNGTSSSNKAVILAVCGPGDKILIDRNCHKSVINGLVLSGAVPVYLKPERNP 132
Query: 149 NFQ----VSPEKLEQAIT--PKTKWLFLNSPSNPSGVVYSQNRLRALAD-----VLVRNP 197
+ + PE ++A+ P K + +P G+ Y+ ++ A VLV
Sbjct: 133 YYGIAGGIPPETFKKALIEHPDAKAAVITNP-TYYGICYNLRKIVEEAHHRGLPVLVDEA 191
Query: 198 HV-HIISDDIYE 208
H H I
Sbjct: 192 HGAHFRFHPILP 203
>gnl|CDD|30866 COG0520, CsdB, Selenocysteine lyase [Amino acid transport and
metabolism].
Length = 405
Score = 39.2 bits (91), Expect = 0.002
Identities = 41/171 (23%), Positives = 69/171 (40%), Gaps = 17/171 (9%)
Query: 45 MPENVKYAVVRAMER-----GETKYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTG 99
P+ V AV R +T + L EA E R + +SD+I+ G
Sbjct: 34 KPQAVLDAVAEYYRRYNANVHRGAHTLAEEATDLYEAAREAVARFLNAD-SSDEIVFTRG 92
Query: 100 AKHVIF---NALMATVNMGDEVLIPR--PYWVSYP-DMVALCGGIPVFVDTQQDDNFQVS 153
+ L ++ GDE+++ + P +A G DD+ +
Sbjct: 93 TTEALNLVARGLGRSLKPGDEIVVSDLEHHSNIVPWQELAKRTGA-KVRVIPLDDDGLLD 151
Query: 154 PEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISD 204
+ LE+ ITPKTK + L+ SN +G V N ++ +A+ L ++ D
Sbjct: 152 LDALEKLITPKTKLVALSHVSNVTGTV---NPVKEIAE-LAHEHGALVLVD 198
>gnl|CDD|35276 KOG0053, KOG0053, KOG0053, Cystathionine beta-lyases/cystathionine
gamma-synthases [Amino acid transport and metabolism].
Length = 409
Score = 38.7 bits (90), Expect = 0.003
Identities = 34/140 (24%), Positives = 54/140 (38%), Gaps = 25/140 (17%)
Query: 104 IFNALMATVNMGDEVLIPR-PYWVSYPDM---VALCGGIPVFVDTQQDDNFQVSPEKLEQ 159
I AL+ + GD ++ Y + + + GG FVD +K+ +
Sbjct: 105 ITVALLHLLPAGDHIVATGDVYGGTLRILRKFLPKFGGEGDFVDV-------DDLKKILK 157
Query: 160 AITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSN 219
AI TK +FL SPSNP V +L LA ++ D+ F +
Sbjct: 158 AIKENTKAVFLESPSNPLLKVPDIEKLARLAH----KYGFLVVVDN----------TFGS 203
Query: 220 IVNVEPSLYERTLVVNGVSK 239
N +P +VV+ +K
Sbjct: 204 PYNQDPLPLGADIVVHSATK 223
>gnl|CDD|32165 COG1982, LdcC, Arginine/lysine/ornithine decarboxylases [Amino acid
transport and metabolism].
Length = 557
Score = 34.5 bits (79), Expect = 0.050
Identities = 13/59 (22%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Query: 107 ALMATVNMGDEVLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNF----QVSPEKLEQAI 161
+ A + GD+VL+ R S + L G PV+++ ++ + + E ++A+
Sbjct: 102 VINAVLTPGDKVLVDRNCHKSIHHGLILAGATPVYLEPSRNPLYGIIGGIPLETFKEAL 160
>gnl|CDD|144011 pfam00266, Aminotran_5, Aminotransferase class-V. This domain is
found in amino transferases, and other enzymes including
cysteine desulphurase EC:4.4.1.-.
Length = 371
Score = 33.4 bits (77), Expect = 0.12
Identities = 27/105 (25%), Positives = 45/105 (42%), Gaps = 25/105 (23%)
Query: 91 SDQIIV---GTGAKHVIFNALMATVNMGDEVLIP-------RPYWVSYPDMVALCGG--- 137
++II T A +++ +L + GDE+L+ W +A G
Sbjct: 61 DEEIIFTSGTTEAINLVAISLGRRLKPGDEILVTEMEHHANLVPWQ----ELAKRTGATV 116
Query: 138 --IPVFVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVV 180
IPV D N + + LE+ +TP+TK + + SN +G V
Sbjct: 117 RVIPV------DPNGLLDLDALEKLLTPRTKLVAITHVSNVTGTV 155
>gnl|CDD|29747 cd01144, BtuF, Cobalamin binding protein BtuF. These proteins have
been shown to function as initial receptors in ABC
transport of vitamin B12 (cobalamin) in eubacterial and
some archaeal species. They belong to the TroA
superfamily of helical backbone metal receptor proteins
that share a distinct fold and ligand binding mechanism.
A typical TroA protein is comprised of two globular
subdomains connected by a single helix and can bind the
metal ion in the cleft between these domains. In
addition, these proteins sometimes have a low complexity
region containing a metal-binding histidine-rich motif
(repetitive HDH sequence)..
Length = 245
Score = 32.9 bits (75), Expect = 0.17
Identities = 22/92 (23%), Positives = 35/92 (38%), Gaps = 8/92 (8%)
Query: 121 PRPYWVS----YPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNP 176
P + P+++AL GG+ VF D + QVS E + A P + L+
Sbjct: 143 IDPLMTAGGDWVPELIALAGGVNVFADAGERS-PQVSWEDVLAA-NPDV--IVLSPCGFG 198
Query: 177 SGVVYSQNRLRALADVLVRNPHVHIISDDIYE 208
+ A VRN V+ + + Y
Sbjct: 199 FTPAILRKEPAWQALPAVRNGRVYAVDGNWYF 230
>gnl|CDD|32700 COG2873, MET17, O-acetylhomoserine sulfhydrylase [Amino acid
transport and metabolism].
Length = 426
Score = 32.5 bits (74), Expect = 0.21
Identities = 17/45 (37%), Positives = 19/45 (42%), Gaps = 8/45 (17%)
Query: 137 GIPV-FVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVV 180
GI V FVD PE E AI TK +F + NP V
Sbjct: 126 GIEVRFVD-------PDDPENFEAAIDENTKAVFAETIGNPGLDV 163
>gnl|CDD|144757 pfam01276, OKR_DC_1, Orn/Lys/Arg decarboxylase, major domain.
Length = 417
Score = 31.7 bits (72), Expect = 0.38
Identities = 25/121 (20%), Positives = 49/121 (40%), Gaps = 19/121 (15%)
Query: 89 YTSDQ---IIVGT-GAKHVIFNALMATVNMGDEVLIPRPYWVSYPDMVALCGGIPVFVDT 144
+ +D+ ++ GT GA + A+ GD VLI R S + + G PV+++
Sbjct: 79 FGADKSYFVVNGTSGANKTVGMAVCTP---GDTVLIDRNCHKSIHHALMMSGATPVYLEP 135
Query: 145 QQD--------DNFQVSPEKLEQAIT--PKTKWLFLNSPSNPS--GVVYSQNRLRALADV 192
++ + E +++A+ P K L +N + G +Y+ +
Sbjct: 136 TRNAYGIIGGIPLHEFQEETIKEALAEVPPAKGPRLAVITNGTYDGTIYNAKEIVDTLGH 195
Query: 193 L 193
L
Sbjct: 196 L 196
>gnl|CDD|173942 cd08183, Fe-ADH2, Iron-containing alcohol dehydrogenases-like.
Iron-containing alcohol dehydrogenases (Fe-ADH).
Alcohol dehydrogenase catalyzes the reduction of
acetaldehyde to alcohol with NADP as cofactor. Its
activity requires iron ions. The protein structure
represents a dehydroquinate synthase-like fold and is a
member of the iron-activated alcohol dehydrogenase-like
family. They are distinct from other alcohol
dehydrogenases which contains different protein domain.
Proteins of this family have not been characterized.
Their specific function is unknown. They are mainly
found in bacteria.
Length = 374
Score = 30.2 bits (69), Expect = 0.89
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Query: 14 SATLVAAQRVRDLRSKGIDV-LCLTAGEPDFDMPENVKYAVVRAMERGETKYTAVAGISP 72
+++L AA + LR+ GI+V + AGEP E V AV A G A+ G S
Sbjct: 31 ASSLRAAWLIEALRAAGIEVTHVVVAGEPS---VELVDAAVAEARNAGCDVVIAIGGGSV 87
Query: 73 L 73
+
Sbjct: 88 I 88
>gnl|CDD|35567 KOG0346, KOG0346, KOG0346, RNA helicase [RNA processing and
modification].
Length = 569
Score = 29.9 bits (67), Expect = 1.2
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 6/62 (9%)
Query: 28 SKGIDVLCLTAGEPDFDMPENVKYAVVRA--MERGETKYTAVAGISPLREAI---VEKFR 82
S+GID + + +FD PE V + R RG K TA++ +SP E +E
Sbjct: 364 SRGIDFHHV-SNVLNFDFPETVTSYIHRVGRTARGNNKGTALSFVSPKEEFGKESLESIL 422
Query: 83 RD 84
+D
Sbjct: 423 KD 424
>gnl|CDD|30959 COG0614, FepB, ABC-type Fe3+-hydroxamate transport system,
periplasmic component [Inorganic ion transport and
metabolism].
Length = 319
Score = 29.8 bits (66), Expect = 1.2
Identities = 19/81 (23%), Positives = 35/81 (43%), Gaps = 5/81 (6%)
Query: 129 PDMVALCGGIPVFVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRA 188
D++ L GG + D + QVSPE++ A + L + + +
Sbjct: 215 GDILELAGGKNIAADEEGPGGAQVSPEQILAA---DPDVIILTGSGGSDPELADELKNNP 271
Query: 189 LADVL--VRNPHVHIISDDIY 207
L L V+N V+++ DD++
Sbjct: 272 LWKNLKAVKNGRVYVLPDDVW 292
>gnl|CDD|31441 COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex,
dihydrolipoamide dehydrogenase (E3) component, and
related enzymes [Energy production and conversion].
Length = 454
Score = 29.8 bits (67), Expect = 1.5
Identities = 25/105 (23%), Positives = 41/105 (39%), Gaps = 14/105 (13%)
Query: 13 PSATLVAAQRVRDLRSKGIDVLCLTAGEPDFDMPENV--KYAVVRAMERGETKYTAVAGI 70
PS L+ A V + ++A P D + + K VVR + G G+
Sbjct: 50 PSKALLHAAEVIEEARHAAKEYGISAEVPKIDFEKLLARKDKVVRLLTGGVEGLLKKNGV 109
Query: 71 SPLR-EAIVEKFRRDNDLH--------YTSDQIIVGTGAKHVIFN 106
+R EA +F + + T+D II+ TG++ I
Sbjct: 110 DVIRGEA---RFVDPHTVEVTGEDKETITADNIIIATGSRPRIPP 151
>gnl|CDD|99746 cd06453, SufS_like, Cysteine desulfurase (SufS)-like. This family
belongs to the pyridoxal phosphate (PLP)-dependent
aspartate aminotransferase superfamily (fold I). The
major groups in this CD correspond to cysteine
desulfurase (SufS) and selenocysteine lyase. SufS
catalyzes the removal of elemental sulfur and selenium
atoms from L-cysteine, L-cystine, L-selenocysteine, and
L-selenocystine to produce L-alanine; and selenocysteine
lyase catalyzes the decomposition of L-selenocysteine..
Length = 373
Score = 29.4 bits (67), Expect = 1.7
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 147 DDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVV 180
DD+ Q+ E LE+ +T +TK + + SN G +
Sbjct: 122 DDDGQLDLEALEKLLTERTKLVAVTHVSNVLGTI 155
>gnl|CDD|146551 pfam03972, MmgE_PrpD, MmgE/PrpD family. This family includes
2-methylcitrate dehydratase EC:4.2.1.79 (PrpD) that is
required for propionate catabolism. It catalyses the
third step of the 2-methylcitric acid cycle.
Length = 445
Score = 28.4 bits (64), Expect = 3.5
Identities = 17/82 (20%), Positives = 28/82 (34%), Gaps = 15/82 (18%)
Query: 21 QRVRDLRSKGIDVLCLTAGEPDFD-MPENVKYAVVRAMERGETKYTAVAGISPL------ 73
R+ L K I++ +P+FD + ++ G A P
Sbjct: 348 PRIDALADK-IEL----REDPEFDAAYPAKRPIARVVLDDGGRVEEAEV-DYPKGHPRNP 401
Query: 74 --REAIVEKFRRDNDLHYTSDQ 93
R+ +VEKFRR +
Sbjct: 402 LSRDDLVEKFRRLLPGLVDPVK 423
>gnl|CDD|38962 KOG3758, KOG3758, KOG3758, Uncharacterized conserved protein
[Function unknown].
Length = 655
Score = 27.6 bits (61), Expect = 6.5
Identities = 16/64 (25%), Positives = 25/64 (39%), Gaps = 2/64 (3%)
Query: 73 LREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDMV 132
LR+A V R Y D+ VGT + ++ + G +PRP + D +
Sbjct: 227 LRKAFVFLSSRPVLFKYLIDE--VGTARSQSLLRQFISALTRGGPGGMPRPIELHAHDPL 284
Query: 133 ALCG 136
G
Sbjct: 285 RYIG 288
>gnl|CDD|36626 KOG1412, KOG1412, KOG1412, Aspartate aminotransferase/Glutamic
oxaloacetic transaminase AAT2/GOT1 [Amino acid transport
and metabolism].
Length = 410
Score = 27.7 bits (61), Expect = 6.5
Identities = 27/145 (18%), Positives = 52/145 (35%), Gaps = 10/145 (6%)
Query: 63 KYTAVAGISPLREAIVE-KFRRDNDL----HYTSDQIIVGTGAKHVIFNALMATVNMGDE 117
+Y + G+ +A E D+ Q + GTGA + + L N +
Sbjct: 69 EYLPILGLPTFTKAATELLLGADSPAIKEDRVFGVQSLSGTGALRIAADFLATFYNK-NT 127
Query: 118 VLIPRPYWVSYPDMVALCGGIPVFVDTQQD-DNFQVSPEKLEQAI---TPKTKWLFLNSP 173
V + P W ++ + G V D +N V E + + +
Sbjct: 128 VYVSNPTWENHHAIFEKAGFTTVATYPYWDAENKCVDLEGFLSDLESAPEGSIIILHACA 187
Query: 174 SNPSGVVYSQNRLRALADVLVRNPH 198
NP+G+ ++ + + +ADV+
Sbjct: 188 HNPTGMDPTREQWKQIADVIKSKNL 212
>gnl|CDD|133053 cd06431, GT8_LARGE_C, LARGE catalytic domain has closest homology
to GT8 glycosyltransferase involved in
lipooligosaccharide synthesis. The catalytic domain of
LARGE is a putative glycosyltransferase. Mutations of
LARGE in mouse and human cause dystroglycanopathies, a
disease associated with hypoglycosylation of the
membrane protein alpha-dystroglycan (alpha-DG) and
consequent loss of extracellular ligand binding. LARGE
needs to both physically interact with
alpha-dystroglycan and function as a glycosyltransferase
in order to stimulate alpha-dystroglycan
hyperglycosylation. LARGE localizes to the Golgi
apparatus and contains three conserved DxD motifs. While
two of the motifs are indispensible for glycosylation
function, one is important for localization of th
eenzyme. LARGE was originally named because it covers
approximately large trunck of genomic DNA, more than
600bp long. The predicted protein structure contains an
N-terminal cytoplasmic domain, a transmembrane region, a
coiled-coil motif, and two putative catalytic domains.
This catalytic domain has closest homology to GT8
glycosyltransferase involved in lipooligosaccharide
synthesis.
Length = 280
Score = 27.4 bits (61), Expect = 6.6
Identities = 30/106 (28%), Positives = 43/106 (40%), Gaps = 13/106 (12%)
Query: 195 RNP-HVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGV--------SKAYAMTG 245
RNP H H+I+D+I I+ Q + VE S Y + + V S Y +
Sbjct: 28 RNPLHFHLITDEIARRILATLFQTWMVPAVEVSFYNAEELKSRVSWIPNKHYSGIYGLMK 87
Query: 246 LRIGYAAGALSLIKSMIVLQGQQTSGACSIAQ-WAAVEALNGPQDF 290
L + A S ++ +IVL T A IA+ W G Q
Sbjct: 88 LVLTEALP--SDLEKVIVLDTDITF-ATDIAELWKIFHKFTGQQVL 130
>gnl|CDD|36690 KOG1477, KOG1477, KOG1477, SPRY domain-containing proteins [General
function prediction only].
Length = 469
Score = 27.3 bits (60), Expect = 7.1
Identities = 17/58 (29%), Positives = 25/58 (43%)
Query: 316 RYMIPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGHGPS 373
Y DG F+L L G +GDVI +++ +NG K G +F P+
Sbjct: 2 GYHGDDGNFFLKSGDGQLYGPVFTTGDVIPCEVNTINGSDFFTKNGPDMGIAFYTPPA 59
>gnl|CDD|33771 COG4012, COG4012, Uncharacterized protein conserved in archaea
[Function unknown].
Length = 342
Score = 27.2 bits (60), Expect = 8.2
Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 4/61 (6%)
Query: 4 ISNILRRVQPSATLVAAQRVRDLRSKGIDVLCLTAGEPDFDMPENVKYAVVRAMERGETK 63
N LR V PS T AQR+R + +G + G P P AV R +++G
Sbjct: 22 PENSLRMVMPSPTSTLAQRLRFMLREGPYL--ALIGVPMGGGP--TTRAVRRHLKKGTRV 77
Query: 64 Y 64
Y
Sbjct: 78 Y 78
>gnl|CDD|35946 KOG0727, KOG0727, KOG0727, 26S proteasome regulatory complex,
ATPase RPT3 [Posttranslational modification, protein
turnover, chaperones].
Length = 408
Score = 26.9 bits (59), Expect = 9.1
Identities = 26/97 (26%), Positives = 44/97 (45%), Gaps = 20/97 (20%)
Query: 43 FDMPENVKYAVVRAMERGETKYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKH 102
FD NVK V+ A R +T L A++ R D + + + K
Sbjct: 289 FDQTTNVK--VIMATNRADT----------LDPALLRPGRLDRKIEFP----LPDRRQKR 332
Query: 103 VIFNALMATVNMGDEV----LIPRPYWVSYPDMVALC 135
++F+ + + +N+ DEV L+ RP +S D+ A+C
Sbjct: 333 LVFSTITSKMNLSDEVDLEDLVARPDKISGADINAIC 369
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.322 0.137 0.406
Gapped
Lambda K H
0.267 0.0732 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 4,946,671
Number of extensions: 270007
Number of successful extensions: 711
Number of sequences better than 10.0: 1
Number of HSP's gapped: 658
Number of HSP's successfully gapped: 43
Length of query: 400
Length of database: 6,263,737
Length adjustment: 96
Effective length of query: 304
Effective length of database: 4,189,273
Effective search space: 1273538992
Effective search space used: 1273538992
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.1 bits)