HHsearch alignment for GI: 254780603 and conserved domain: COG0565
>COG0565 LasT rRNA methylase [Translation, ribosomal structure and biogenesis].
Probab=99.87 E-value=4.6e-22 Score=145.81 Aligned_cols=141 Identities=22% Similarity=0.319 Sum_probs=113.9
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC-CCCCCCCCCCCCCCCCCHHHH
Q ss_conf 0688723432068899999998642001100136863200000134443333211012-223221122222221000000
Q gi|254780603|r 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI-RISNLTDALQKMHSWGFQTIG 211 (282)
Q Consensus 133 ~~~i~ld~i~dp~NlG~I~Rta~a~g~~~vil~~~~~~~~~~~~~ras~Ga~~~l~~~-~~~~~~~~l~~~~~~~~~i~~ 211 (282)
T Consensus 4 ~i~iVLVep~~~gNIG~vARaMKNfGl~eL~LV~Pr~~-~~eeA~a~A~gA~dile~A~i~~tL~eAl~d~~----~v~a 78 (242)
T COG0565 4 NIRIVLVEPSHPGNIGSVARAMKNFGLSELRLVNPRAG-LDEEARALAAGARDILENAKIVDTLEEALADCD----LVVA 78 (242)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHCCCCEEEEECCCCC-CCHHHHHHHCCCHHHHCCCEEECCHHHHHCCCC----EEEE
T ss_conf 61799975888752799999998679664899789889-889999986466666506766467999960788----7998
Q ss_pred CCCCCC---CC----------C-CCCCCCCCEEEEECCCCCCCCHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 012333---22----------1-122368988999758678987799985893999278968743789999999999998
Q gi|254780603|r 212 LSSDSK---KP----------L-EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 (282)
Q Consensus 212 ~~~~~~---~~----------~-~~~~~~~~~~lv~G~E~~Gl~~~~~~~~d~~v~Ip~~~~~~SLNvs~a~ai~l~~~~ 277 (282)
T Consensus 79 Ttar~r~~~~~~~~P~e~~~~l~~~~~-~~~vAlvFGRE~~GLtNeEl~~c~~~v~IP~~p~Y~sLNLa~AV~ii~YEl~ 157 (242)
T COG0565 79 TTARSRDLLRPLRTPREAAPELLEKAK-GGKVALVFGRERVGLTNEELALCDVLVTIPANPDYPSLNLAQAVQVILYELR 157 (242)
T ss_pred ECCCCCCCCCCCCCHHHHHHHHHHHHC-CCCEEEEECCCCCCCCHHHHHHHHEEEECCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 056667665565687878999998714-8976999788668978899985027873679986543659999999999999
Q ss_pred HH
Q ss_conf 76
Q gi|254780603|r 278 NH 279 (282)
Q Consensus 278 ~~ 279 (282)
T Consensus 158 ~~ 159 (242)
T COG0565 158 KA 159 (242)
T ss_pred HH
T ss_conf 86