HHsearch alignment for GI: 254780603 and conserved domain: COG1385
>COG1385 Uncharacterized protein conserved in bacteria [Function unknown].
Probab=94.66 E-value=0.27 Score=26.85 Aligned_cols=138 Identities=20% Similarity=0.268 Sum_probs=76.2
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHHCCCC--CCCCCCCCCCHHH-------HHHHHHHHHHH-----HCCC-CCCCCC
Q ss_conf 5068872343206889999999864200110--0136863200000-------13444333321-----1012-223221
Q gi|254780603|r 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGI--ITTKRYSPSESAV-------LAKSASGALEH-----IPYI-RISNLT 196 (282)
Q Consensus 132 ~~~~i~ld~i~dp~NlG~I~Rta~a~g~~~v--il~~~~~~~~~~~-------~~ras~Ga~~~-----l~~~-~~~~~~ 196 (282)
T Consensus 77 ~~~i~l~~~~~kg~k~d~iiqkatELGv~~i~p~~ter~~~k~~~~~~~kler~~ki~ieAaEQs~R~~vP~I~~~~~~~ 156 (246)
T COG1385 77 PLKITLAQAIPKGDKLELIIQKATELGVSKIIPLITERSVVKLDGKKAAKLERWQKIAIEAAEQSGRNVVPEIKPPESLK 156 (246)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHCCCEEEEEEECEEEEEHHCCHHHHHHHHHHHHHHHHHHCCCCCCCEEECHHHHH
T ss_conf 86079999627518899999999871801179885012677200110368999999999999864998698262313099
Q ss_pred CCCCCCCCCCCHHHHCCCCCCCCCC-----CCCCCCCEEEEECCCCCCCCHHHHHHCCC--EEEECCCCCCCHHHHHHHH
Q ss_conf 1222222210000000123332211-----22368988999758678987799985893--9992789687437899999
Q gi|254780603|r 197 DALQKMHSWGFQTIGLSSDSKKPLE-----QEIKNDKIALILGAEGKGLRPKTQETATS--MAHLHMPGIIKALNVSNAA 269 (282)
Q Consensus 197 ~~l~~~~~~~~~i~~~~~~~~~~~~-----~~~~~~~~~lv~G~E~~Gl~~~~~~~~d~--~v~Ip~~~~~~SLNvs~a~ 269 (282)
T Consensus 157 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iiIGPEG-Gfs~~Ei~~l~~~g~~~v~LGprI--LRtETA~ 233 (246)
T COG1385 157 ELLKEIDDEDALKLIYEEKAKEGLLALPLLEALPEGKVLLIIGPEG-GFSEDEIELLREAGFTPVSLGPRI--LRTETAA 233 (246)
T ss_pred HHHHHCCCHHHHHHEECCCCCCCCCCCHHHHCCCCCCEEEEECCCC-CCCHHHHHHHHHCCCEEECCCCCE--EEHHHHH
T ss_conf 9998546300133222544544543330120156773899988998-999899999997798581378972--0077899
Q ss_pred HHH
Q ss_conf 999
Q gi|254780603|r 270 AVA 272 (282)
Q Consensus 270 ai~ 272 (282)
T Consensus 234 l~a 236 (246)
T COG1385 234 LAA 236 (246)
T ss_pred HHH
T ss_conf 999