HHsearch alignment for GI: 254780603 and conserved domain: COG4080

>COG4080 SpoU rRNA Methylase family enzyme [General function prediction only].
Probab=97.93  E-value=7.7e-05  Score=47.13  Aligned_cols=141  Identities=19%  Similarity=0.273  Sum_probs=96.5

Q ss_pred             CEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCC--CC-HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf             06887234320688999999986420011001368632--00-0001344433332110122232211222222210000
Q gi|254780603|r  133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP--SE-SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT  209 (282)
Q Consensus       133 ~~~i~ld~i~dp~NlG~I~Rta~a~g~~~vil~~~~~~--~~-~~~~~ras~Ga~~~l~~~~~~~~~~~l~~~~~~~~~i  209 (282)
T Consensus         2 ev~vvlHN~~S~~rv~e~ariaygfg~k~lV~tka~g~AAQsGIp~~~kla~k~--G~~vlvf~dL~DAlevL~P~v~ll   79 (147)
T COG4080           2 EVIVVLHNVSSVQRVLEFARIAYGFGAKRLVLTKAKGSAAQSGIPEVLKLAFKL--GKPVLVFPDLDDALEVLRPDVTLL   79 (147)
T ss_pred             CEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHCCHHHHHHHHHH--CCCEEEEHHHHHHHHHCCCCEEEE
T ss_conf             079999427755899999999713685389997125476663568899999983--994798522778997459756998


Q ss_pred             HHCCCCCCCCCCCCC-CCCCEEEEECCCCCCCCHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             000123332211223-6898899975867898779998589399927896874378999999999999876
Q gi|254780603|r  210 IGLSSDSKKPLEQEI-KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH  279 (282)
Q Consensus       210 ~~~~~~~~~~~~~~~-~~~~~~lv~G~E~~Gl~~~~~~~~d~~v~Ip~~~~~~SLNvs~a~ai~l~~~~~~  279 (282)
T Consensus        80 ~~~~~~~ek~~dp~e~ie~~vliVf~ga~~gl~k~El~lg~~~~y~-ve~~VG~~---g~lAi~Lyell~~  146 (147)
T COG4080          80 VGSASEGEKKLDPNEKIEGRVLIVFSGAEPGLTKRELELGADLRYI-VEADVGEL---GALAIFLYELLKA  146 (147)
T ss_pred             ECCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCHHHCCCCCCEEEE-EECCCHHH---HHHHHHHHHHHCC
T ss_conf             1476443234794312463379999268877586660567727999-84464178---8899999998704