HHsearch alignment for GI: 254780603 and conserved domain: COG4080
>COG4080 SpoU rRNA Methylase family enzyme [General function prediction only].
Probab=97.93 E-value=7.7e-05 Score=47.13 Aligned_cols=141 Identities=19% Similarity=0.273 Sum_probs=96.5
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCC--CC-HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 06887234320688999999986420011001368632--00-0001344433332110122232211222222210000
Q gi|254780603|r 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP--SE-SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 (282)
Q Consensus 133 ~~~i~ld~i~dp~NlG~I~Rta~a~g~~~vil~~~~~~--~~-~~~~~ras~Ga~~~l~~~~~~~~~~~l~~~~~~~~~i 209 (282)
T Consensus 2 ev~vvlHN~~S~~rv~e~ariaygfg~k~lV~tka~g~AAQsGIp~~~kla~k~--G~~vlvf~dL~DAlevL~P~v~ll 79 (147)
T COG4080 2 EVIVVLHNVSSVQRVLEFARIAYGFGAKRLVLTKAKGSAAQSGIPEVLKLAFKL--GKPVLVFPDLDDALEVLRPDVTLL 79 (147)
T ss_pred CEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHCCHHHHHHHHHH--CCCEEEEHHHHHHHHHCCCCEEEE
T ss_conf 079999427755899999999713685389997125476663568899999983--994798522778997459756998
Q ss_pred HHCCCCCCCCCCCCC-CCCCEEEEECCCCCCCCHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 000123332211223-6898899975867898779998589399927896874378999999999999876
Q gi|254780603|r 210 IGLSSDSKKPLEQEI-KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279 (282)
Q Consensus 210 ~~~~~~~~~~~~~~~-~~~~~~lv~G~E~~Gl~~~~~~~~d~~v~Ip~~~~~~SLNvs~a~ai~l~~~~~~ 279 (282)
T Consensus 80 ~~~~~~~ek~~dp~e~ie~~vliVf~ga~~gl~k~El~lg~~~~y~-ve~~VG~~---g~lAi~Lyell~~ 146 (147)
T COG4080 80 VGSASEGEKKLDPNEKIEGRVLIVFSGAEPGLTKRELELGADLRYI-VEADVGEL---GALAIFLYELLKA 146 (147)
T ss_pred ECCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCHHHCCCCCCEEEE-EECCCHHH---HHHHHHHHHHHCC
T ss_conf 1476443234794312463379999268877586660567727999-84464178---8899999998704