HHsearch alignment for GI: 254780603 and conserved domain: PRK11713
>PRK11713 16S rRNA m3U1498 methyltransferase; Provisional.
Probab=94.46 E-value=0.29 Score=26.65 Aligned_cols=138 Identities=20% Similarity=0.271 Sum_probs=74.2
Q ss_pred EEEECCCCCHHHHHHHHHHHHHHHCCCC--CCCCCCCCCCHH-----H---HHHHHHHHH-----HHHC-CCCCCCCCCC
Q ss_conf 8872343206889999999864200110--013686320000-----0---134443333-----2110-1222322112
Q gi|254780603|r 135 LMVLDHVNDPHNIGAILRSAVAFSCDGI--ITTKRYSPSESA-----V---LAKSASGAL-----EHIP-YIRISNLTDA 198 (282)
Q Consensus 135 ~i~ld~i~dp~NlG~I~Rta~a~g~~~v--il~~~~~~~~~~-----~---~~ras~Ga~-----~~l~-~~~~~~~~~~ 198 (282)
T Consensus 78 i~L~~al~K~~~~e~il~k~tElGV~~i~p~~s~rs~~~~~~~~~~~k~eR~~~i~~eA~eQs~r~~lP~i~~~~~l~~~ 157 (243)
T PRK11713 78 LTLAQALPKGDRLELIIQKATELGVSAIIPLITERSVVKLDGERADKKLERWQKIAIEAAEQSGRTRIPEIRPPVSLKEL 157 (243)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCHHHH
T ss_conf 79999600755899999999872877799997000545212105666699999999999997099828776576799999
Q ss_pred CCCCCCCCCHHHHCCCCCCCC--CCCCCCCCCEEEEECCCCCCCCHHHHHHCCC--EEEECCCCCCCHHHHHH----HHH
Q ss_conf 222222100000001233322--1122368988999758678987799985893--99927896874378999----999
Q gi|254780603|r 199 LQKMHSWGFQTIGLSSDSKKP--LEQEIKNDKIALILGAEGKGLRPKTQETATS--MAHLHMPGIIKALNVSN----AAA 270 (282)
Q Consensus 199 l~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~lv~G~E~~Gl~~~~~~~~d~--~v~Ip~~~~~~SLNvs~----a~a 270 (282)
T Consensus 158 l~~~~~~~~~~i-~~~~~~~~~~~~~~~~~~~i~i~IGPEG-Gfs~~E~~~l~~~g~~~vsLG~~I--LR~ETA~i~als 233 (243)
T PRK11713 158 LEALADGDLRLV-LHPEANLAAALKSLKPAGKVLLLIGPEG-GFSPEEIELLREAGFTPVSLGPRI--LRTETAALAALA 233 (243)
T ss_pred HHHCCCCCCEEE-ECCCCCCCCCCCCCCCCCCEEEEECCCC-CCCHHHHHHHHHCCCEEEECCCCC--CHHHHHHHHHHH
T ss_conf 953867782899-8688775432011257885899987888-999999999998898898679991--357749999999
Q ss_pred HHHHHH
Q ss_conf 999999
Q gi|254780603|r 271 VALYIT 276 (282)
Q Consensus 271 i~l~~~ 276 (282)
T Consensus 234 ~l~~~~ 239 (243)
T PRK11713 234 ALQALL 239 (243)
T ss_pred HHHHHH
T ss_conf 999985