HHsearch alignment of GI: 254780603 and MMDB domain: 1ipa_A_1-108
>1ipa_A (A:1-108) RRMH, RNA 2'-O-ribose methyltransferase; DEEP trefoil knot, rossmann fold, EL30-like fold, riken structural genomics/proteomics initiative; 2.40A {Thermus thermophilus}
Probab=99.38 E-value=2.2e-12 Score=90.01 Aligned_cols=99 Identities=13% Similarity=0.125 Sum_probs=75.9
Q ss_pred CCCCCHHHHHHHHHHHCCCCCCCCCEEEEEEHHHHHHHHHCCCEEEEEEEECCCCCCCC--CHHH--HHHCCCCEEEECH
Q ss_conf 22237656777654311221112881999857889999978981899999737843354--3455--4326996999768
Q gi|254780603|r 23 LRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL--DWDA--NLPHPFPVKTVPP 98 (282)
Q Consensus 23 ~~~~n~~~k~~~~l~~k~k~R~~~~~~iIeG~~~V~eaL~~~~~~i~~i~~te~~~~~~--~~~~--~l~~~~~I~~v~~ 98 (282)
.++.|+.+|++.++..+ ++|+++|.|++||.|+|.|||+++.... .++++++..... .... ....+++++.++.
T Consensus 4 tS~~n~~ik~~~~L~~~-~~R~~~g~fiieG~~~v~eal~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~ 81 (108)
T 1ipa_A 4 TSTANPRIKELARLLER-KHRDSQRRFLIEGAREIERALQAGIELE-QALVWEGGLNPEEQQVYAALGRVGRLALLEVSE 81 (108)
T ss_dssp CCTTSHHHHHHHGGGSH-HHHHHHTEEEEESHHHHHHHHHTTCCEE-EEEEETTCCCHHHHHHHHCC-----CEEEEECH
T ss_pred CCCCCHHHHHHHHHHCC-CCHHHHCEEEEEEHHHHHHHHHCCCCCE-EEEEECCCCCCHHHHHHHHHHHHCCCCEEEECH
T ss_conf 27999799999875026-6413619899984899999996799825-999982765513679999988748974999399
Q ss_pred HHHHHHHCCCCCCCCCCEEEECCCCC
Q ss_conf 99877524777777442024115555
Q gi|254780603|r 99 QTIDKIVGKEAVHQGLALETAPLLSP 124 (282)
Q Consensus 99 ~~l~~i~~~~~~hqGi~a~~~~~~~~ 124 (282)
+.|+++++.. +|||+++.+.+...+
T Consensus 82 ~~l~~ls~~~-~~qGv~Av~~~~~~~ 106 (108)
T 1ipa_A 82 AVLKKLSVRD-NPAGLIALARMPERT 106 (108)
T ss_dssp HHHHHHCCSS-SCCSEEEEEECCCCC
T ss_pred HHHHHHCCCC-CCCEEEEEEECCCCC
T ss_conf 9997660589-976299997157676