HHsearch alignment of GI: 254780603 and MMDB domain: 1ipa_A_109-274
>1ipa_A (A:109-274) RRMH, RNA 2'-O-ribose methyltransferase; DEEP trefoil knot, rossmann fold, EL30-like fold, riken structural genomics/proteomics initiative; 2.40A {Thermus thermophilus}
Probab=100.00 E-value=1e-42 Score=263.73 Aligned_cols=150 Identities=22% Similarity=0.315 Sum_probs=140.7
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 66506887234320688999999986420011001368632000001344433332110122232211222222210000
Q gi|254780603|r 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209 (282)
Q Consensus 130 ~~~~~~i~ld~i~dp~NlG~I~Rta~a~g~~~vil~~~~~~~~~~~~~ras~Ga~~~l~~~~~~~~~~~l~~~~~~~~~i 209 (282)
+..+++++||+++||+|+|+|+|||++||++.+++.+. .+++++++.|+|+|+++++|+.++++ .+.+.++++.++++
T Consensus 5 ~~~~~~ivl~~~~~p~NiG~i~Rta~afG~~~i~~~~~-~~~~~~~~~r~s~ga~~~~~~~~~~~-~~~~~~~~~~~~~i 82 (166)
T 1ipa_A 5 SPDALILVAVGLEKPGNLGAVLRSADAAGAEAVLVAGG-VDLYSPQVIRNSTGVVFSLRTLAASE-SEVLDWIKQHNLPL 82 (166)
T ss_dssp CTTCEEEEEESCCCHHHHHHHHHHHHHHTCSEEEEESC-CCTTCHHHHHHTTTGGGTSCEEEECH-HHHHHHHHHTTCCE
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHCCCCEEEECCC-CCCCCCHHEECCCCEEEEEEEEECCH-HHHHHHHHHCCEEE
T ss_conf 68978999967978617999999999739978996288-33345211012443068999996157-88888765123001
Q ss_pred HHCCCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 000123332211223689889997586789877999858939992789687437899999999999987614
Q gi|254780603|r 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 (282)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~lv~G~E~~Gl~~~~~~~~d~~v~Ip~~~~~~SLNvs~a~ai~l~~~~~~~~ 281 (282)
++++..+..++.+++++++.+||||+|++|||+++++.||.+++|||.|.++|||||+|++|+|||+.||+.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~lv~G~E~~Gls~~~l~~~d~~v~IP~~g~~~SLNva~A~~I~lye~~rq~~ 154 (166)
T 1ipa_A 83 VATTPHAEALYWEANLRPPVAIAVGPEHEGLRAAWLEAAQTQVRIPMQGQADSLNVSVSAALLLYEALRQRL 154 (166)
T ss_dssp EEECTTCSSBGGGSCCCSSEEEEECCTTSCCCHHHHHHCSEEEBCCCCSSCCCCCHHHHHHHHHHHHHHHHT
T ss_pred ECCCCCCCCCCEEECCCCCCEEEECCCCCCCCHHHHHHCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 011135653220102477738998677788899999748979997799999700499999999999998587