HHsearch alignment of GI: 254780603 and MMDB domain: 2ha8_A_
>2ha8_A (A:) TAR (HIV-1) RNA loop binding protein; methyltransferase, structural genomics, structural genomics consortium, SGC, RNA binding protein; HET: SAH; 1.60A {Homo sapiens}
Probab=100.00 E-value=2.3e-42 Score=261.75 Aligned_cols=171 Identities=20% Similarity=0.302 Sum_probs=149.4
Q ss_pred CCCCCCEEEECCCCCCHHH--CCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 7774420241155554011--26650688723432068899999998642001100136863200000134443333211
Q gi|254780603|r 110 VHQGLALETAPLLSPTLDA--VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187 (282)
Q Consensus 110 ~hqGi~a~~~~~~~~~l~~--~~~~~~~i~ld~i~dp~NlG~I~Rta~a~g~~~vil~~~~~~~~~~~~~ras~Ga~~~l 187 (282)
+|||.++.+.+......+. ....+++|+||+++||+|+|+|+|||++||++.+++.+. .++++++++|+|+|+.+++
T Consensus 1 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~NiG~i~Rta~afG~~~i~~~~~-~~~~~~~~~r~s~g~~~~~ 79 (184)
T 2ha8_A 1 NSRVSDLDLELLFQDRAARLGKSISRLIVVASLIDKPTNLGGLCRTCEVFGASVLVVGSL-QCISDKQFQHLSVSAEQWL 79 (184)
T ss_dssp -------------------CCCCCCCCEEECTTCCCHHHHHHHHHHHHHTTCSEEEESCG-GGGGSHHHHHHHTTGGGTS
T ss_pred CCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCEEECCC-CCCCCHHHHEEEECCEEEE
T ss_conf 985220308888777998835767888999816868630889999999629970664255-5567856620000010010
Q ss_pred CCCCC--CCCCCCCCCCCCCCCHHHHCCCC-CCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHCCCEEEECCCCCCCHHH
Q ss_conf 01222--32211222222210000000123-3322112236898899975867898779998589399927896874378
Q gi|254780603|r 188 PYIRI--SNLTDALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264 (282)
Q Consensus 188 ~~~~~--~~~~~~l~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~lv~G~E~~Gl~~~~~~~~d~~v~Ip~~~~~~SLN 264 (282)
++..+ .++.++++.++..|+++++++.. ...++.+++++.+++||||+|+.||++++++.||.+|+|||.+.++|||
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~G~E~~Gls~~~l~~~d~~v~IP~~g~~~SLN 159 (184)
T 2ha8_A 80 PLVEVKPPQLIDYLQQKKTEGYTIIGVEQTAKSLDLTQYCFPEKSLLLLGNEREGIPANLIQQLDVCVEIPQQGIIRSLN 159 (184)
T ss_dssp CEEECCGGGHHHHHHHHHHTTCEEEEECCCTTCEEGGGCCCCSSEEEEECBTTTBSCHHHHTTCSEEEECCCCSSSSCCC
T ss_pred CHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCHHHHHHCCEEEEECCCCCCCCEE
T ss_conf 10102322444455542012222223322222333210003578558855555799999998689899962958997025
Q ss_pred HHHHHHHHHHHHHHHHC
Q ss_conf 99999999999987614
Q gi|254780603|r 265 VSNAAAVALYITQNHFA 281 (282)
Q Consensus 265 vs~a~ai~l~~~~~~~~ 281 (282)
||+|++|+|||+.||+.
T Consensus 160 vs~A~~I~l~e~~r~~~ 176 (184)
T 2ha8_A 160 VHVSGALLIWEYTRQQL 176 (184)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
T ss_conf 99999999999998550