HHsearch alignment of GI: 254780603 and MMDB domain: 2ha8_A_

>2ha8_A (A:) TAR (HIV-1) RNA loop binding protein; methyltransferase, structural genomics, structural genomics consortium, SGC, RNA binding protein; HET: SAH; 1.60A {Homo sapiens}
Probab=100.00  E-value=2.3e-42  Score=261.75  Aligned_cols=171  Identities=20%  Similarity=0.302  Sum_probs=149.4

Q ss_pred             CCCCCCEEEECCCCCCHHH--CCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             7774420241155554011--26650688723432068899999998642001100136863200000134443333211
Q gi|254780603|r  110 VHQGLALETAPLLSPTLDA--VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI  187 (282)
Q Consensus       110 ~hqGi~a~~~~~~~~~l~~--~~~~~~~i~ld~i~dp~NlG~I~Rta~a~g~~~vil~~~~~~~~~~~~~ras~Ga~~~l  187 (282)
                      +|||.++.+.+......+.  ....+++|+||+++||+|+|+|+|||++||++.+++.+. .++++++++|+|+|+.+++
T Consensus         1 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~NiG~i~Rta~afG~~~i~~~~~-~~~~~~~~~r~s~g~~~~~   79 (184)
T 2ha8_A            1 NSRVSDLDLELLFQDRAARLGKSISRLIVVASLIDKPTNLGGLCRTCEVFGASVLVVGSL-QCISDKQFQHLSVSAEQWL   79 (184)
T ss_dssp             -------------------CCCCCCCCEEECTTCCCHHHHHHHHHHHHHTTCSEEEESCG-GGGGSHHHHHHHTTGGGTS
T ss_pred             CCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCEEECCC-CCCCCHHHHEEEECCEEEE
T ss_conf             985220308888777998835767888999816868630889999999629970664255-5567856620000010010


Q ss_pred             CCCCC--CCCCCCCCCCCCCCCHHHHCCCC-CCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHCCCEEEECCCCCCCHHH
Q ss_conf             01222--32211222222210000000123-3322112236898899975867898779998589399927896874378
Q gi|254780603|r  188 PYIRI--SNLTDALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN  264 (282)
Q Consensus       188 ~~~~~--~~~~~~l~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~lv~G~E~~Gl~~~~~~~~d~~v~Ip~~~~~~SLN  264 (282)
                      ++..+  .++.++++.++..|+++++++.. ...++.+++++.+++||||+|+.||++++++.||.+|+|||.+.++|||
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~G~E~~Gls~~~l~~~d~~v~IP~~g~~~SLN  159 (184)
T 2ha8_A           80 PLVEVKPPQLIDYLQQKKTEGYTIIGVEQTAKSLDLTQYCFPEKSLLLLGNEREGIPANLIQQLDVCVEIPQQGIIRSLN  159 (184)
T ss_dssp             CEEECCGGGHHHHHHHHHHTTCEEEEECCCTTCEEGGGCCCCSSEEEEECBTTTBSCHHHHTTCSEEEECCCCSSSSCCC
T ss_pred             CHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCHHHHHHCCEEEEECCCCCCCCEE
T ss_conf             10102322444455542012222223322222333210003578558855555799999998689899962958997025


Q ss_pred             HHHHHHHHHHHHHHHHC
Q ss_conf             99999999999987614
Q gi|254780603|r  265 VSNAAAVALYITQNHFA  281 (282)
Q Consensus       265 vs~a~ai~l~~~~~~~~  281 (282)
                      ||+|++|+|||+.||+.
T Consensus       160 vs~A~~I~l~e~~r~~~  176 (184)
T 2ha8_A          160 VHVSGALLIWEYTRQQL  176 (184)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
T ss_conf             99999999999998550