HHsearch alignment of GI: 254780603 and MMDB domain: 2yy8_A_
>2yy8_A (A:) ATRM56, UPF0106 protein PH0461; DEEP trefoil knot, structural genomics, NPPSFA; HET: SAM MTA; 2.48A {Pyrococcus horikoshii}
Probab=96.72 E-value=0.0042 Score=36.84 Aligned_cols=125 Identities=21% Similarity=0.142 Sum_probs=79.8
Q ss_pred CCHHHHHHHHHHHHHHHCCCCCCCCCCCC--CCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCC-
Q ss_conf 20688999999986420011001368632--000001344433332110122232211222222210000000123332-
Q gi|254780603|r 142 NDPHNIGAILRSAVAFSCDGIITTKRYSP--SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK- 218 (282)
Q Consensus 142 ~dp~NlG~I~Rta~a~g~~~vil~~~~~~--~~~~~~~ras~Ga~~~l~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~- 218 (282)
+|-.=.--+.=||-|||+++++++...-. .-+-.-+-..=|.-|.+.+ . .++.+.+++.+-.++-+++-|..
T Consensus 13 RDkRiTTHV~LtARAfGA~~iil~~e~D~~v~esv~dV~~rwGG~F~ie~--~---~~w~~~ik~~kG~VVHLTMYG~~i 87 (201)
T 2yy8_A 13 RDKRVTTHVALTARAFGADGIIIASEEDEKVKESVEDVVKRWGGPFFIEF--N---RNWRKVMKEFTGVKVHLTMYGLHV 87 (201)
T ss_dssp -CTHHHHHHHHHHHHTTCSEEEESSSCCHHHHHHHHHHHHHHCSCCBCCB--C---SCHHHHHHHCCSEEEEEEEEEEEH
T ss_pred CCCCHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHCCCCEEEEE--C---CCHHHHHHHCCCEEEEEEECCCCC
T ss_conf 67632458889998726875897478772588899999985199669997--4---588999985499799997458751
Q ss_pred --CCCCC----CCCCCEEEEECCCCCCCCHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf --21122----368988999758678987799985893999278968743789999999999998
Q gi|254780603|r 219 --PLEQE----IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277 (282)
Q Consensus 219 --~~~~~----~~~~~~~lv~G~E~~Gl~~~~~~~~d~~v~Ip~~~~~~SLNvs~a~ai~l~~~~ 277 (282)
-+.++ .-.++..+|+|.|- +|.++.+.+|+.|.|--...-| ..|.||+|..++
T Consensus 88 ~dvi~~Ir~~~~~~~~ilvVVGaeK--VP~evYelADyNVaVgnQPHSE----VAALAiFLDrl~ 146 (201)
T 2yy8_A 88 DDVIEELKEKLKKGEDFMIIVGAEK--VPREVYELADYNVAIGNQPHSE----VAALAVLLDRLL 146 (201)
T ss_dssp HHHHHHHHHHHHTTCCEEEEECSSC--CCHHHHHHCSEEEESSSSCCCH----HHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCCCCEEEEECCCC--CCHHHHHHCCCCEEECCCCCHH----HHHHHHHHHHHH
T ss_conf 1567888763345897899988885--9989984356425527887089----999999999870