HHsearch alignment of GI: 254780603 and MMDB domain: 2yy8_A_

>2yy8_A (A:) ATRM56, UPF0106 protein PH0461; DEEP trefoil knot, structural genomics, NPPSFA; HET: SAM MTA; 2.48A {Pyrococcus horikoshii}
Probab=96.72  E-value=0.0042  Score=36.84  Aligned_cols=125  Identities=21%  Similarity=0.142  Sum_probs=79.8

Q ss_pred             CCHHHHHHHHHHHHHHHCCCCCCCCCCCC--CCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCC-
Q ss_conf             20688999999986420011001368632--000001344433332110122232211222222210000000123332-
Q gi|254780603|r  142 NDPHNIGAILRSAVAFSCDGIITTKRYSP--SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK-  218 (282)
Q Consensus       142 ~dp~NlG~I~Rta~a~g~~~vil~~~~~~--~~~~~~~ras~Ga~~~l~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~-  218 (282)
                      +|-.=.--+.=||-|||+++++++...-.  .-+-.-+-..=|.-|.+.+  .   .++.+.+++.+-.++-+++-|.. 
T Consensus        13 RDkRiTTHV~LtARAfGA~~iil~~e~D~~v~esv~dV~~rwGG~F~ie~--~---~~w~~~ik~~kG~VVHLTMYG~~i   87 (201)
T 2yy8_A           13 RDKRVTTHVALTARAFGADGIIIASEEDEKVKESVEDVVKRWGGPFFIEF--N---RNWRKVMKEFTGVKVHLTMYGLHV   87 (201)
T ss_dssp             -CTHHHHHHHHHHHHTTCSEEEESSSCCHHHHHHHHHHHHHHCSCCBCCB--C---SCHHHHHHHCCSEEEEEEEEEEEH
T ss_pred             CCCCHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHCCCCEEEEE--C---CCHHHHHHHCCCEEEEEEECCCCC
T ss_conf             67632458889998726875897478772588899999985199669997--4---588999985499799997458751


Q ss_pred             --CCCCC----CCCCCEEEEECCCCCCCCHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             --21122----368988999758678987799985893999278968743789999999999998
Q gi|254780603|r  219 --PLEQE----IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ  277 (282)
Q Consensus       219 --~~~~~----~~~~~~~lv~G~E~~Gl~~~~~~~~d~~v~Ip~~~~~~SLNvs~a~ai~l~~~~  277 (282)
                        -+.++    .-.++..+|+|.|-  +|.++.+.+|+.|.|--...-|    ..|.||+|..++
T Consensus        88 ~dvi~~Ir~~~~~~~~ilvVVGaeK--VP~evYelADyNVaVgnQPHSE----VAALAiFLDrl~  146 (201)
T 2yy8_A           88 DDVIEELKEKLKKGEDFMIIVGAEK--VPREVYELADYNVAIGNQPHSE----VAALAVLLDRLL  146 (201)
T ss_dssp             HHHHHHHHHHHHTTCCEEEEECSSC--CCHHHHHHCSEEEESSSSCCCH----HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHCCCCCCEEEEECCCC--CCHHHHHHCCCCEEECCCCCHH----HHHHHHHHHHHH
T ss_conf             1567888763345897899988885--9989984356425527887089----999999999870