HHsearch alignment of GI: 254780603 and MMDB domain: 3gyq_A_113-272
>3gyq_A (A:113-272) RRNA (adenosine-2'-O-)-methyltransferase; rRNA methyltransferase, spout mtases, SAM, trefoil knot, antibiotic resistance; HET: SAM; 2.45A {Streptomyces cyaneus}
Probab=100.00 E-value=4.5e-41 Score=254.34 Aligned_cols=152 Identities=25% Similarity=0.325 Sum_probs=130.5
Q ss_pred CCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCC-CCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 266506887234320688999999986420011001368-6320000013444333321101222322112222222100
Q gi|254780603|r 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR-YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207 (282)
Q Consensus 129 ~~~~~~~i~ld~i~dp~NlG~I~Rta~a~g~~~vil~~~-~~~~~~~~~~ras~Ga~~~l~~~~~~~~~~~l~~~~~~~~ 207 (282)
..+.+++++||+|+||+|+|+|+|||++||+++|++.+. +.+++++.+.+++.|+++..++.. .+..+.+..+++.++
T Consensus 3 ~~~~~~~ivL~~v~~p~NiGai~Rta~a~G~~~i~l~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 81 (160)
T 3gyq_A 3 ASRRGDVVVLDGVKIVGNIGAIVRTSLALGASGIILVDSDITSIADRRLQRASRGYVFSLPVVL-SGREEAIAFIRDSGM 81 (160)
T ss_dssp HHSCSCEEEEESCCCHHHHHHHHHHHHHTTCSEEEEESCCCSCTTCHHHHHHTTTGGGSSCEEE-ECHHHHHHHHHTTTC
T ss_pred HCCCCEEEEEECCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHCCCC-CCCHHHHHHHHCCCH
T ss_conf 1358739999676227789999999983446646302454221111100145521112001222-321145666630000
Q ss_pred HHHHCCCC-CCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 00000123-332211223689889997586789877999858939992789687437899999999999987614
Q gi|254780603|r 208 QTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 (282)
Q Consensus 208 ~i~~~~~~-~~~~~~~~~~~~~~~lv~G~E~~Gl~~~~~~~~d~~v~Ip~~~~~~SLNvs~a~ai~l~~~~~~~~ 281 (282)
++++++.. +..++.+.+++++.+||||+|++||++++++.||.+++|||.+.++|||||+|+||+|||+.||+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~lvlG~E~~Gls~e~l~~~d~~v~IP~~~~~~SLNvs~A~~I~lye~~~q~~ 156 (160)
T 3gyq_A 82 QLMTLKADGDISVKELGDNPDRLALLFGSEKGGPSDLFEEASSASVSIPMMSQTESLNVSVSLGIALHERIDRNL 156 (160)
T ss_dssp EEEEECTTCSEEGGGGGGCCSCEEEEEESSTTCSCGGGTTTCCEEEECCCSCTTSCCCHHHHHHHHHHTTHHHHS
T ss_pred HEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHCCEEEEECCCCCCCEEEHHHHHHHHHHHHHHHHH
T ss_conf 011001234432221335888648997688888799999748938993698998753199999999999996256