HHsearch alignment of GI: 254780603 and MMDB domain: 3ilk_A_1-174
>3ilk_A (A:1-174) Uncharacterized tRNA/RRNA methyltransferase HI0380; APC63004, methylase family protein, haemophilus influenzae RD KW20; 2.01A {Haemophilus influenzae}
Probab=100.00 E-value=5.4e-40 Score=248.18 Aligned_cols=150 Identities=17% Similarity=0.129 Sum_probs=136.7
Q ss_pred CCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCH
Q ss_conf 26650688723432068899999998642001100136863200000134443333211012223221122222221000
Q gi|254780603|r 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208 (282)
Q Consensus 129 ~~~~~~~i~ld~i~dp~NlG~I~Rta~a~g~~~vil~~~~~~~~~~~~~ras~Ga~~~l~~~~~~~~~~~l~~~~~~~~~ 208 (282)
...++++|+||+|+||+|+|+|+|||++||+++|++.+ .+++++++.|+|+|+.+++|+.++.++.+++..+++.++.
T Consensus 3 ~~~~~~~vvl~~v~~~~NiG~i~Rsa~~fG~~~i~~~~--~~~~~~~~~~~s~ga~~~~~~~~~~~~~~~~~~l~~~~~~ 80 (174)
T 3ilk_A 3 AXLENIRIVLIETSHSGNIGSAARAXKTXGLTQLCLVS--PKSVDEQSYALSAGAENIVKNARVVDSFDEAVDDCSLVIG 80 (174)
T ss_dssp CSSTTEEEEEESCCSHHHHHHHHHHHHHHTCCEEEEES--CSCCSHHHHHTTTTCHHHHHHCEEESSHHHHTTTCSEEEE
T ss_pred CCHHCCEEEECCCCCCCHHHHHHHHHHHCCCCEEEEEC--CCCCCHHHHHHHCCCCCCCCEEEEEEHHHHHHHHHHHHHH
T ss_conf 23338789980898987099999999974998899958--9999989988633412234317994206566665556666
Q ss_pred HHHCCC--------CCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 000012--------333221122368988999758678987799985893999278968743789999999999998761
Q gi|254780603|r 209 TIGLSS--------DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280 (282)
Q Consensus 209 i~~~~~--------~~~~~~~~~~~~~~~~lv~G~E~~Gl~~~~~~~~d~~v~Ip~~~~~~SLNvs~a~ai~l~~~~~~~ 280 (282)
+.+... .+..++.+++++++.+||||+|+.||++++++.||.+|+|||.+.++|||||+|+||+|||+.+|+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~G~E~~Gls~e~l~~~d~~v~IP~~~~~~SLNvs~A~aI~l~e~~~q~ 160 (174)
T 3ilk_A 81 TSARLRHLQNTLIEPRECAEKVVAYKGKIAIVFGRERIGLTNEELLKCHYHLNIPANPDYSSLNLAXAVQLVSYELRXAF 160 (174)
T ss_dssp ECCCCGGGTTTEECHHHHHHHHHHCSSCEEEEECBTTTBCCHHHHHTCSEEECCCCCTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCCCCCCCCCHHHHCCCCCCEEEEECCCCCCCCCHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 66542034311014420000001478866886066668998122201001354126898522538999999999999976