HHsearch results for GI: 254780603 and protein with PDBid: 1vhk_A

>1vhk_A Hypothetical protein YQEU; structural genomics, unknown function; 2.60A {Bacillus subtilis} SCOP: b.122.1.2 c.116.1.5
Probab=91.98  E-value=0.094  Score=28.20  Aligned_cols=141  Identities=13%  Similarity=0.221  Sum_probs=75.3

Q ss_pred             EEEEECCCCCHHHHHHHHHHHHHHHCCCC--CCCCCCCCCC------------HHHHHHHHHHH-HHHHC-CCCCCCCCC
Q ss_conf             68872343206889999999864200110--0136863200------------00013444333-32110-122232211
Q gi|254780603|r  134 LLMVLDHVNDPHNIGAILRSAVAFSCDGI--ITTKRYSPSE------------SAVLAKSASGA-LEHIP-YIRISNLTD  197 (282)
Q Consensus       134 ~~i~ld~i~dp~NlG~I~Rta~a~g~~~v--il~~~~~~~~------------~~~~~ras~Ga-~~~l~-~~~~~~~~~  197 (282)
                      .+.++-.+-.|.++--|++.|.-.|++.+  +.++++...+            ...++.|+.=+ -.++| +....++.+
T Consensus        82 ~i~L~~~l~k~~~~e~ii~katELGV~~I~p~~sers~~~~~~~~~~~k~eR~~~ii~eA~eQsgr~~lP~I~~~~~l~~  161 (268)
T 1vhk_A           82 KVYIASGLPKGDKLEWIIQKGTELGAHAFIPFQAARSVVKLDDKKAKKKRERWTKIAKEAAEQSYRNEVPRVMDVHSFQQ  161 (268)
T ss_dssp             EEEEEEECCSTTHHHHHHHHHHHTTCCEEEEECCTTCCCC---------HHHHHHHHHHHHHHTTCSSCCEECCCBCHHH
T ss_pred             CEEEEEEEECCCHHHHHHHHHHHHCCCEEEEEHHCEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHH
T ss_conf             25799842167528889988783272567810103012212220556409999999999999719998767974369999


Q ss_pred             CCCCCCCCCCHHHHCCCCCCC--------CCCCCCCCCCEEEEECCCCCCCCHHHHHH---CCCEEEECCCCC---CCHH
Q ss_conf             222222210000000123332--------21122368988999758678987799985---893999278968---7437
Q gi|254780603|r  198 ALQKMHSWGFQTIGLSSDSKK--------PLEQEIKNDKIALILGAEGKGLRPKTQET---ATSMAHLHMPGI---IKAL  263 (282)
Q Consensus       198 ~l~~~~~~~~~i~~~~~~~~~--------~~~~~~~~~~~~lv~G~E~~Gl~~~~~~~---~d~~v~Ip~~~~---~~SL  263 (282)
                      +++........++..+.....        ...+..-.+++++++|.|| |.++.-++.   +. ...+.+..+   +|. 
T Consensus       162 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~IGPEG-Gfs~~Ei~~l~~~g-~~~v~LG~~ILR~ET-  238 (268)
T 1vhk_A          162 LLQRMQDFDKCVVAYEESSKQGEISAFSAIVSSLPKGSSLLIVFGPEG-GLTEAEVERLTEQD-GVTCGLGPRILRTET-  238 (268)
T ss_dssp             HHHHGGGSSEEEEECC--------CHHHHHHHTCCTTCEEEEEECCTT-CCCHHHHHHHHHTT-CEEECCCSSCCCTTT-
T ss_pred             HHHHCCCCCCEEEECCCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCC-CCCHHHHHHHHHCC-CEEEECCCCCCHHHH-
T ss_conf             997286679489974200234424678888764347981999983898-89999999999789-999778998145774-


Q ss_pred             HHHHHHHHHHHHHH
Q ss_conf             89999999999998
Q gi|254780603|r  264 NVSNAAAVALYITQ  277 (282)
Q Consensus       264 Nvs~a~ai~l~~~~  277 (282)
                      =+-+|.++++|+.-
T Consensus       239 A~i~als~i~~~~~  252 (268)
T 1vhk_A          239 APLYALSAISYQTE  252 (268)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
T ss_conf             99999999999988