HHsearch results for GI: 254780603 and protein with PDBid: 1vhk_A
>1vhk_A Hypothetical protein YQEU; structural genomics, unknown function; 2.60A {Bacillus subtilis} SCOP: b.122.1.2 c.116.1.5
Probab=91.98 E-value=0.094 Score=28.20 Aligned_cols=141 Identities=13% Similarity=0.221 Sum_probs=75.3
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCCC--CCCCCCCCCC------------HHHHHHHHHHH-HHHHC-CCCCCCCCC
Q ss_conf 68872343206889999999864200110--0136863200------------00013444333-32110-122232211
Q gi|254780603|r 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGI--ITTKRYSPSE------------SAVLAKSASGA-LEHIP-YIRISNLTD 197 (282)
Q Consensus 134 ~~i~ld~i~dp~NlG~I~Rta~a~g~~~v--il~~~~~~~~------------~~~~~ras~Ga-~~~l~-~~~~~~~~~ 197 (282)
.+.++-.+-.|.++--|++.|.-.|++.+ +.++++...+ ...++.|+.=+ -.++| +....++.+
T Consensus 82 ~i~L~~~l~k~~~~e~ii~katELGV~~I~p~~sers~~~~~~~~~~~k~eR~~~ii~eA~eQsgr~~lP~I~~~~~l~~ 161 (268)
T 1vhk_A 82 KVYIASGLPKGDKLEWIIQKGTELGAHAFIPFQAARSVVKLDDKKAKKKRERWTKIAKEAAEQSYRNEVPRVMDVHSFQQ 161 (268)
T ss_dssp EEEEEEECCSTTHHHHHHHHHHHTTCCEEEEECCTTCCCC---------HHHHHHHHHHHHHHTTCSSCCEECCCBCHHH
T ss_pred CEEEEEEEECCCHHHHHHHHHHHHCCCEEEEEHHCEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHH
T ss_conf 25799842167528889988783272567810103012212220556409999999999999719998767974369999
Q ss_pred CCCCCCCCCCHHHHCCCCCCC--------CCCCCCCCCCEEEEECCCCCCCCHHHHHH---CCCEEEECCCCC---CCHH
Q ss_conf 222222210000000123332--------21122368988999758678987799985---893999278968---7437
Q gi|254780603|r 198 ALQKMHSWGFQTIGLSSDSKK--------PLEQEIKNDKIALILGAEGKGLRPKTQET---ATSMAHLHMPGI---IKAL 263 (282)
Q Consensus 198 ~l~~~~~~~~~i~~~~~~~~~--------~~~~~~~~~~~~lv~G~E~~Gl~~~~~~~---~d~~v~Ip~~~~---~~SL 263 (282)
+++........++..+..... ...+..-.+++++++|.|| |.++.-++. +. ...+.+..+ +|.
T Consensus 162 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~IGPEG-Gfs~~Ei~~l~~~g-~~~v~LG~~ILR~ET- 238 (268)
T 1vhk_A 162 LLQRMQDFDKCVVAYEESSKQGEISAFSAIVSSLPKGSSLLIVFGPEG-GLTEAEVERLTEQD-GVTCGLGPRILRTET- 238 (268)
T ss_dssp HHHHGGGSSEEEEECC--------CHHHHHHHTCCTTCEEEEEECCTT-CCCHHHHHHHHHTT-CEEECCCSSCCCTTT-
T ss_pred HHHHCCCCCCEEEECCCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCC-CCCHHHHHHHHHCC-CEEEECCCCCCHHHH-
T ss_conf 997286679489974200234424678888764347981999983898-89999999999789-999778998145774-
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 89999999999998
Q gi|254780603|r 264 NVSNAAAVALYITQ 277 (282)
Q Consensus 264 Nvs~a~ai~l~~~~ 277 (282)
=+-+|.++++|+.-
T Consensus 239 A~i~als~i~~~~~ 252 (268)
T 1vhk_A 239 APLYALSAISYQTE 252 (268)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
T ss_conf 99999999999988