HHsearch results for GI: 254780603 and protein with PDBid: 2qwv_A
>2qwv_A UPF0217 protein VC_A1059; unknown function, structural genomics, PSI- 2, protein structure initiative; 2.60A {Vibrio cholerae o1 biovar eltor str} SCOP: c.116.1.7
Probab=96.02 E-value=0.0037 Score=36.29 Aligned_cols=129 Identities=12% Similarity=0.054 Sum_probs=82.1
Q ss_pred CCCEEEEECCCC-------CHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 650688723432-------0688999999986420011001368632000001344433332110122232211222222
Q gi|254780603|r 131 NSQLLMVLDHVN-------DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203 (282)
Q Consensus 131 ~~~~~i~ld~i~-------dp~NlG~I~Rta~a~g~~~vil~~~~~~~~~~~~~ras~Ga~~~l~~~~~~~~~~~l~~~~ 203 (282)
+++..|-+++-. |-.+++..++.|..-... +.......++.|- ++...++.+.++.+.
T Consensus 67 ~p~r~I~f~G~~l~~l~p~dErsia~~I~kaL~~~~~----------~~~~~~~e~~pGi-----~v~~~~fe~~l~e~~ 131 (208)
T 2qwv_A 67 DYSRTITVEANEISDVGGFHEAALIALLVKALDASVG----------MGKEQTRVVQPGL-----TVRTISFEALLGELA 131 (208)
T ss_dssp SSCEEEEEETTTC----CCSHHHHHHHHHHHHHHTTT----------CCTTCEEEEETTE-----EEECCCHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCC----------CCCCCEEEECCCE-----EEECCCHHHHHHHHH
T ss_conf 9975899955534788965089999999998746468----------8876327857998-----994889999999986
Q ss_pred CCCCHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHCC----CEEEECCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 2100000001233322112236898899975867898779998589----399927896874378999999999999876
Q gi|254780603|r 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT----SMAHLHMPGIIKALNVSNAAAVALYITQNH 279 (282)
Q Consensus 204 ~~~~~i~~~~~~~~~~~~~~~~~~~~~lv~G~E~~Gl~~~~~~~~d----~~v~Ip~~~~~~SLNvs~a~ai~l~~~~~~ 279 (282)
.++++|-++.+|. ++.+..++.+.+||+| -..|++++-.+... ..|++ +-.+|=.+++.+|+-|++.||
T Consensus 132 -e~~~i~~Lde~G~-~i~~~~~~~~~~FILg-Dh~~l~~~e~~~L~~~~~~~iSl----Gp~~L~a~hcI~ivh~~LDr~ 204 (208)
T 2qwv_A 132 -EHHSLYMMDKKGD-SIRDIKIGPNPCFILT-DHIPMPKKSGNSMKRLGVEKISL----GPKMLFASQCVTLIHNEIDHQ 204 (208)
T ss_dssp -TTSEEEEEEEEEE-ETTTSCCCSSEEEEEC-C----------CTTTTTCEEEEC----CSSCCCHHHHHHHHHHHHHHH
T ss_pred -CCCCEEEECCCCC-CHHHCCCCCCCEEEEE-CCCCCCHHHHHHHHHCCCCEEEE----CCHHHHHHHHHHHHHHHHHCC
T ss_conf -4797899878998-3422568999879970-89998978999998718823754----708888778999999987202
Q ss_pred HC
Q ss_conf 14
Q gi|254780603|r 280 FA 281 (282)
Q Consensus 280 ~~ 281 (282)
-+
T Consensus 205 ~~ 206 (208)
T 2qwv_A 205 EA 206 (208)
T ss_dssp HH
T ss_pred CC
T ss_conf 03