HHsearch results for GI: 254780603 and protein with PDBid: 3ilk_A

>3ilk_A Uncharacterized tRNA/RRNA methyltransferase HI0380; APC63004, methylase family protein, haemophilus influenzae RD KW20; 2.01A {Haemophilus influenzae}
Probab=100.00  E-value=1.7e-34  Score=215.75  Aligned_cols=143  Identities=18%  Similarity=0.194  Sum_probs=113.8

Q ss_pred             CCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCC-CCCCCCCCCCCCCCCHHH
Q ss_conf             5068872343206889999999864200110013686320000013444333321101222-322112222222100000
Q gi|254780603|r  132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI-SNLTDALQKMHSWGFQTI  210 (282)
Q Consensus       132 ~~~~i~ld~i~dp~NlG~I~Rta~a~g~~~vil~~~~~~~~~~~~~ras~Ga~~~l~~~~~-~~~~~~l~~~~~~~~~i~  210 (282)
                      ..+.|||+++|+|+|+|+|+|||++||++++++...+  +++++++++|+|+.+.++...+ .++.+++..+...    +
T Consensus         6 ~~i~iVL~~p~~p~NiGai~Rs~~~fG~~~L~lV~p~--~~~~~a~~~a~ga~~~l~~~~~~~~~~~~~~~~~~~----~   79 (244)
T 3ilk_A            6 ENIRIVLIETSHSGNIGSAARAMKTMGLTQLCLVSPK--SVDEQSYALSAGAENIVKNARVVDSFDEAVDDCSLV----I   79 (244)
T ss_dssp             TTEEEEEESCCSHHHHHHHHHHHHHHTCCEEEEESCS--CCSHHHHHTTTTCHHHHHHCEEESSHHHHTTTCSEE----E
T ss_pred             HCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCC--CCCHHHHHHHCCCCCCCCCEEEEECHHHHHHHHHHH----H
T ss_conf             3989999489886769999999998099979993899--989799997475411237579984066666667788----8


Q ss_pred             HCCCC-----------CCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             00123-----------3322112236898899975867898779998589399927896874378999999999999876
Q gi|254780603|r  211 GLSSD-----------SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH  279 (282)
Q Consensus       211 ~~~~~-----------~~~~~~~~~~~~~~~lv~G~E~~Gl~~~~~~~~d~~v~Ip~~~~~~SLNvs~a~ai~l~~~~~~  279 (282)
                      +++..           .+.......++++++||||+|+.||+.+.++.||..|+|||.+.++|||||+|++|+|||++++
T Consensus        80 ~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ialvfG~E~~GLs~~~l~~~d~~v~IP~~~~~~SLNls~AvaIvlYEl~~~  159 (244)
T 3ilk_A           80 GTSARLRHLQNTLIEPRECAEKVVAYKGKIAIVFGRERIGLTNEELLKCHYHLNIPANPDYSSLNLAMAVQLVSYELRMA  159 (244)
T ss_dssp             EECCCCGGGTTTEECHHHHHHHHHHCSSCEEEEECBTTTBCCHHHHHTCSEEECCCCCTTSCCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCCCCCCHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHCCCEEEEECCCCCCCCEEHHHHHHHHHHHHHHH
T ss_conf             99876422564436878742232036886488616666899768761556069855899983232899999999999998


Q ss_pred             H
Q ss_conf             1
Q gi|254780603|r  280 F  280 (282)
Q Consensus       280 ~  280 (282)
                      .
T Consensus       160 ~  160 (244)
T 3ilk_A          160 F  160 (244)
T ss_dssp             H
T ss_pred             H
T ss_conf             7