HHsearch results for GI: 254780603 and protein with PDBid: 3n4j_A
>3n4j_A RNA methyltransferase; center for structural genomics of INF diseases, csgid; 1.47A {Yersinia pestis} PDB: 3n4k_A* 1mxi_A* 1j85_A*
Probab=100.00 E-value=2.1e-38 Score=238.14 Aligned_cols=150 Identities=17% Similarity=0.169 Sum_probs=134.1
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCC---CCCCCCCCH
Q ss_conf 50688723432068899999998642001100136863200000134443333211012223221122---222221000
Q gi|254780603|r 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL---QKMHSWGFQ 208 (282)
Q Consensus 132 ~~~~i~ld~i~dp~NlG~I~Rta~a~g~~~vil~~~~~~~~~~~~~ras~Ga~~~l~~~~~~~~~~~l---~~~~~~~~~ 208 (282)
.-+-|+|++++||+|+|+|+|||++||++++++.+.+.++.++.+.++++|..+.+++....+...+. +.....+++
T Consensus 3 ~~l~ivL~~p~~P~NlGaI~Rta~afGv~~viv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (165)
T 3n4j_A 3 AMLNIVLFEPEIPPNTGNIIRLCANTGCQLHLIKPLGFTWDDKRLRRAGLDYHEFADIKHHHDYQAFLDSEKLDSTQPAR 82 (165)
T ss_dssp CCEEEEEESCCCHHHHHHHHHHHHHHTCEEEEESCCSSCCCHHHHHHTTCCHHHHTTCEEESSHHHHHHHTTCCSSSCTT
T ss_pred CCEEEEEECCCCCCCHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHCCHHHHCCHHHHHHHHHHHHHHHHHCCCCEE
T ss_conf 63699996899998199999999976997894168654025189998837336532112100388888999873356427
Q ss_pred HHHCCCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHCC--CEEEECCCCCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 00001233322112236898899975867898779998589--39992789687437899999999999987614
Q gi|254780603|r 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT--SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281 (282)
Q Consensus 209 i~~~~~~~~~~~~~~~~~~~~~lv~G~E~~Gl~~~~~~~~d--~~v~Ip~~~~~~SLNvs~a~ai~l~~~~~~~~ 281 (282)
+++++..+...+++++++.+.+||||+|++|||+++++.|| ++|+|||.+.++|||||+|+||+|||+.||++
T Consensus 83 i~~~~~~~~~~~~~~~~~~~~alv~GnE~~Gls~~~l~~~d~~~~v~IP~~g~~~SLNvsvA~aI~lye~~RQ~~ 157 (165)
T 3n4j_A 83 LFALTTKGTPAHSAVSYQANDYLLFGPETRGLPAYILDALPAQQKIRIPMQADSRSMNLSNAVSVVVYEAWRQLG 157 (165)
T ss_dssp EEEECTTCSSBTTTSCCCTTEEEEECCTTTCSCHHHHTTSCGGGEEBCCCCTTCCCCCHHHHHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHCCCCCCEEEECCCCCCCCHHHHHHCCCCEEEEECCCCCCCEEEHHHHHHHHHHHHHHHCC
T ss_conf 886313221036663257661699735667899999985887639980499999865899999999999998049