HHsearch results for GI: 254780603 and protein with PDBid: 3nk6_A
>3nk6_A 23S rRNA methyltransferase; nosiheptide, nosiheptide-resistance methyltransferase, 23S R methyltransferase; 2.00A {Streptomyces actuosus} PDB: 3nk7_A* 3gyq_A*
Probab=100.00 E-value=0 Score=405.57 Aligned_cols=254 Identities=15% Similarity=0.209 Sum_probs=218.0
Q ss_pred CCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEEHHHHHHHHHCCCEEEEEEEECCCCCC-CCCHHHHHHCCCCEEEECHHH
Q ss_conf 0222376567776543112211128819998578899999789818999997378433-543455432699699976899
Q gi|254780603|r 22 KLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA-RLDWDANLPHPFPVKTVPPQT 100 (282)
Q Consensus 22 k~~~~n~~~k~~~~l~~k~k~R~~~~~~iIeG~~~V~eaL~~~~~~i~~i~~te~~~~-~~~~~~~l~~~~~I~~v~~~~ 100 (282)
..++.||.+|++.++. +++|++.+.|++||.++|.|||+++.. +..+|++++... ..........+++++.++.+.
T Consensus 10 ItS~~Np~ik~l~~L~--kk~R~~~~~~lveG~~~v~eal~~g~~-~~~l~~~~~~~~~~~l~~l~~~~~i~v~~v~~~~ 86 (277)
T 3nk6_A 10 ITNASDPAVQRIIDVT--KHSRASIKTTLIEDTEPLMECIRAGVQ-FIEVYGSSGTPLDPALLDLCRQREIPVRLIDVSI 86 (277)
T ss_dssp TSBCSSCSHHHHHHHH--HTC----CEEEEESHHHHHHHHHTTCC-EEEEEEETTSCCCHHHHHHHHHTTCCEEEECHHH
T ss_pred EECCCCHHHHHHHHHH--HCCHHHCCEEEEEEHHHHHHHHHCCCC-EEEEEEECCCCCCHHHHHHHHHCCCCEEEECHHH
T ss_conf 6289998999999876--505525395999807999999977999-3699997898778899999996799589978999
Q ss_pred HHHHHCCCCCCCCCCEEEECCCCCCHHHC-CCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCC-CCCCCCCHHHHHH
Q ss_conf 87752477777744202411555540112-665068872343206889999999864200110013-6863200000134
Q gi|254780603|r 101 IDKIVGKEAVHQGLALETAPLLSPTLDAV-RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT-KRYSPSESAVLAK 178 (282)
Q Consensus 101 l~~i~~~~~~hqGi~a~~~~~~~~~l~~~-~~~~~~i~ld~i~dp~NlG~I~Rta~a~g~~~vil~-~~~~~~~~~~~~r 178 (282)
|+++++.+ +|||+++.+.......++++ ..++++|+||+||||||+|+|+|||+|||+++|+++ ++++|+|+++++|
T Consensus 87 l~~ls~~~-~~qgv~a~~~~~~~~~l~~~~~~~~~ilvLD~IqDPgNlGaIiRta~afG~~~vil~~~~~~~~~~~kv~R 165 (277)
T 3nk6_A 87 VNQLFKAE-RKAKVFGIARVPRPARLADIAERGGDVVVLDGVKIVGNIGAIVRTSLALGAAGIVLVDSDLATIADRRLLR 165 (277)
T ss_dssp HTTCC------CCEEEEEECCCCCCHHHHHHHCSCEEEEESCCCHHHHHHHHHHHHHTTCSEEEEESCCCSCTTCHHHHH
T ss_pred HHHHHCCC-CCCEEEEEECCCCCCCHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCC
T ss_conf 99986589-97559999846885558777404986999947887745899999999708857996257855234731243
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCC-CCCCCEEEEECCCCCCCCHHHHHHCCCEEEECCC
Q ss_conf 443333211012223221122222221000000012333221122-3689889997586789877999858939992789
Q gi|254780603|r 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE-IKNDKIALILGAEGKGLRPKTQETATSMAHLHMP 257 (282)
Q Consensus 179 as~Ga~~~l~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~lv~G~E~~Gl~~~~~~~~d~~v~Ip~~ 257 (282)
+|+|++|++|++.. ++.+++++++++||++++++.+++.+++++ +++++++||||||++||++++++.||..|+|||.
T Consensus 166 aS~Ga~~~~p~~~~-~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~lv~G~E~~Gls~~~~~~~d~~v~IPm~ 244 (277)
T 3nk6_A 166 ASRGYVFSLPVVLA-DREEAVSFLRDNDIALMVLDTDGDLGVKDLGDRADRMALVFGSEKGGPSGLFQEASAGTVSIPML 244 (277)
T ss_dssp HTTTCTTTSCEEEC-CHHHHHHHHHHTTCCEEEECTTCSEEGGGGGGCCSCCEEEEEBTTTBSCHHHHHHCSCEEECCCS
T ss_pred CCCCCEEECCEEEC-CCCHHHHHHHHCCCEEEEEEECCCCCEECCCCCCCCEEEEECCCCCCCCHHHHHHCCEEEEECCC
T ss_conf 25663342120220-32034677763586179998437644000114788889998776678889999738949997298
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 68743789999999999998761
Q gi|254780603|r 258 GIIKALNVSNAAAVALYITQNHF 280 (282)
Q Consensus 258 ~~~~SLNvs~a~ai~l~~~~~~~ 280 (282)
|.+||||||+|+||+|||..||+
T Consensus 245 g~~eSLNvsvA~~I~lyE~~rq~ 267 (277)
T 3nk6_A 245 SSTESLNVSVSVGIALHERSARN 267 (277)
T ss_dssp STTCCCCHHHHHHHHHHHTHHHH
T ss_pred CCCCEEEHHHHHHHHHHHHHHHC
T ss_conf 99972159999999999999713