HHSEARCH alignment of GI: 254780603 and SCOP domain: d2qmma1

Alignment
>d2qmma1 c.116.1.7 (A:95-288) Uncharacterized protein AF1056 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=93.62  E-value=0.018  Score=30.91  Aligned_cols=124  Identities=16%  Similarity=0.260  Sum_probs=77.6

Q ss_pred             CCCEEEEECCC------CCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf             65068872343------206889999999864200110013686320000013444333321101222322112222222
Q gi|254780603|r  131 NSQLLMVLDHV------NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS  204 (282)
Q Consensus       131 ~~~~~i~ld~i------~dp~NlG~I~Rta~a~g~~~vil~~~~~~~~~~~~~ras~Ga~~~l~~~~~~~~~~~l~~~~~  204 (282)
                      .++..|.+++-      -|=.+++..++.|..--.      .+..       ..++.|-     +....++.++++++.+
T Consensus        59 ~p~r~I~f~G~~lk~l~pdErSia~~I~kaL~~~~------~~~~-------~e~~pGI-----~vs~~~~e~~l~e~~~  120 (194)
T d2qmma1          59 SPPKSILIKGDEVRRMSPDERNVAGHIKKALAVEC------GKSW-------KKVHSGV-----YVSRKGLEELIEELSE  120 (194)
T ss_dssp             SCCEEEEEETTTCCSCCSSHHHHHHHHHHHHHSCC------CSSC-------EEEETTE-----EEECCCHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCC------CCCC-------EEECCCE-----EEECCCHHHHHHHHHC
T ss_conf             99735898463245678117889999999836788------8873-------1305898-----9918889999999864


Q ss_pred             CCCHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHH----CCCEEEECCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             1000000012333221122368988999758678987799985----89399927896874378999999999999876
Q gi|254780603|r  205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET----ATSMAHLHMPGIIKALNVSNAAAVALYITQNH  279 (282)
Q Consensus       205 ~~~~i~~~~~~~~~~~~~~~~~~~~~lv~G~E~~Gl~~~~~~~----~d~~v~Ip~~~~~~SLNvs~a~ai~l~~~~~~  279 (282)
                       +..+|-++.+|. ++++..++.+.++|+| -..|++++-.+.    ....+++    +-.+|=.+++.+|+-|++.|-
T Consensus       121 -~~~~~~Ld~~G~-~i~~~~~~~~~~FILs-Dh~~l~~~e~~~L~~~~~~~iSL----Gp~~L~a~hcI~ivh~~LDr~  192 (194)
T d2qmma1         121 -KYSIIYLKEDGV-DISNAQLPPNPLFVIG-DHEGLTEEQEKVVERYAALKLSL----SPLSLLAEQCVVIAHHHLDRL  192 (194)
T ss_dssp             -HSEEEEEEEEEE-EGGGSCCCSSEEEEEE-CTTCCCHHHHHHHHTTCSEEEEC----CSSCCCHHHHHHHHHHHHHHH
T ss_pred             -CCCEEEECCCCC-CCCCCCCCCCCEEEEE-CCCCCCHHHHHHHHHCCCEEEEC----CCCCCCHHHHHHHHHHHHHHC
T ss_conf             -696899889898-6222336999869975-89998867888776427714753----654225346696999988650


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: alpha/beta knot
superfamily: alpha/beta knot
family: AF1056-like
domain: Uncharacterized protein AF1056
species: Archaeoglobus fulgidus [TaxId: 2234]