HHSEARCH alignment of GI: 254780603 and SCOP domain: d2qwva1

Alignment

Probab=95.60  E-value=0.0021  Score=36.26  Aligned_cols=83  Identities=11%  Similarity=0.029  Sum_probs=63.8

Q ss_pred             CCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHC----CCEEEECCCCCCCHHHHHH
Q ss_conf             232211222222210000000123332211223689889997586789877999858----9399927896874378999
Q gi|254780603|r  192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA----TSMAHLHMPGIIKALNVSN  267 (282)
Q Consensus       192 ~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~lv~G~E~~Gl~~~~~~~~----d~~v~Ip~~~~~~SLNvs~  267 (282)
                      ..++.++++.+. .++++|-++.+|. ++.+..++.+.+||+| -..|++++-.+..    +..+++    +-.+|=.++
T Consensus       113 ~~~~e~~l~e~~-e~~~~~~Lde~G~-~i~~~~~~~~~~FILs-Dh~~~~~~e~~~L~~~g~~~iSL----Gp~~L~ash  185 (201)
T d2qwva1         113 TISFEALLGELA-EHHSLYMMDKKGD-SIRDIKIGPNPCFILT-DHIPMPKKSGNSMKRLGVEKISL----GPKMLFASQ  185 (201)
T ss_dssp             CCCHHHHHHHHH-TTSEEEEEEEEEE-ETTTSCCCSSEEEEEC-C----------CTTTTTCEEEEC----CSSCCCHHH
T ss_pred             CCCHHHHHHHHH-CCCCEEEECCCCC-CHHHCCCCCCCEEEEE-CCCCCCHHHHHHHHHCCCEEEEE----CCHHHHHHH
T ss_conf             889999999985-4896899889999-6633668899879970-89998978999887528704765----607887758


Q ss_pred             HHHHHHHHHHHHHC
Q ss_conf             99999999987614
Q gi|254780603|r  268 AAAVALYITQNHFA  281 (282)
Q Consensus       268 a~ai~l~~~~~~~~  281 (282)
                      +.+|+-|++.||-.
T Consensus       186 cI~ivH~~LDr~~~  199 (201)
T d2qwva1         186 CVTLIHNEIDHQEA  199 (201)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHC
T ss_conf             99999998620001

SCOP domain information

class: Alpha and beta proteins (a/b)
fold: alpha/beta knot
superfamily: alpha/beta knot
family: AF1056-like
domain: Uncharacterized protein VCA1059
species: Vibrio cholerae [TaxId: 666]